RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7560
(507 letters)
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 177 bits (449), Expect = 2e-50
Identities = 80/319 (25%), Positives = 137/319 (42%), Gaps = 20/319 (6%)
Query: 184 IVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKI 243
I ES + I++K I +VV+ + IE+ +P + + + A+++A+ D+
Sbjct: 3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ 62
Query: 244 ALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLG 303
A +D D G+P K++ GL T +G ++ ++E++ +L+G
Sbjct: 63 A--KDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIG 120
Query: 304 NTNIPELL-WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNR 362
N+ E + + ++ NP++ G SSGG A V+A L LG+D GGS R
Sbjct: 121 KLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIR 180
Query: 363 IPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDL---------LPYS 413
PA YCGV G K T G V+ G+ S+ GP+ ++ +D +
Sbjct: 181 QPAAYCGVVGMKPTYGRVSRFGLVAF----ASSLDQIGPLTRNVKDNAIVLEAISGADVN 236
Query: 414 KCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHS 473
P + + D+ LKV +E V+ D+ +A++ V LK +
Sbjct: 237 DSTSAPVDDVDFTSEIGKDIKGLKVALPKEYLGEGVAD---DVKEAVQNAVETLKSLGAV 293
Query: 474 -EPEDLSHIKQFRLGYDVW 491
E L + K Y V
Sbjct: 294 VEEVSLPNTKFGIPSYYVI 312
Score = 43.3 bits (101), Expect = 6e-05
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 31 ELLGDNGVLVFPAAPESAPYHYATFFRPY----NFTYWALFNILDFPVTNVPVGLDGKGL 86
++ + V+V P AP +A P N N+ P +VP G G
Sbjct: 391 KVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NGR 449
Query: 87 PLG 89
P+G
Sbjct: 450 PIG 452
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 152 bits (384), Expect = 3e-41
Identities = 73/310 (23%), Positives = 131/310 (42%), Gaps = 26/310 (8%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
I + ++ ++ Q +E I++++P++ A + R ++E+
Sbjct: 7 RKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG---------- 56
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
+ G+P K++ G+ T + ++ DA +V+++K AG +++G N+
Sbjct: 57 -----KFWGIPVAIKDNILTLGMRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANL 111
Query: 308 PELLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPAL 366
E S + + NP++L R G SSGG A VSA V LG+D GGS R PA
Sbjct: 112 DEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPAS 171
Query: 367 YCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYN 426
CGV G+K T G V+ G+ S+ GPI K D + + D+ A
Sbjct: 172 LCGVVGYKPTYGLVSRYGLVAF----ASSLDQIGPITKTVRDAAILMEIISGRDENDATT 227
Query: 427 FDKSVD-----LAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHS-EPEDLSH 480
++ VD + P ++ + + + + + + L+ + E + H
Sbjct: 228 VNRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPH 287
Query: 481 IKQFRLGYDV 490
IK Y V
Sbjct: 288 IKYSVATYYV 297
Score = 42.5 bits (99), Expect = 8e-05
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 16 QWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYH---YATFFRPYNFTYWALFNILDF 72
A + + +L E+L ++ P +P +A + N+
Sbjct: 361 NKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGL 420
Query: 73 PVTNVPVGLDGKGLPLG 89
P +VP G LP+G
Sbjct: 421 PAISVPFGFS-NNLPVG 436
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 129 bits (323), Expect = 1e-32
Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 12/247 (4%)
Query: 176 PLPPVKNKIVLE-SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALE 234
P + ++ +L Q+ +K+++ ++ V ++ + +VN N + +
Sbjct: 29 QNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQ 88
Query: 235 EAKAADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERV 294
++A Q GVP + KE + KG +TLGL +G +++D +V+ +
Sbjct: 89 LSQAPRQ----------GLLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVL 138
Query: 295 KTAGGILLGNTNIPELLWSESR-NMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGL 353
K G + +TN+P+ + S N ++GQ+ NP+ ++ G SSGGE L+ + GS LGL
Sbjct: 139 KLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGL 198
Query: 354 GTDLGGSNRIPALYCGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYS 413
GTD+GGS R P+ +CG+ G K T ++ G+ G + L+ GP+ + E L
Sbjct: 199 GTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCL 258
Query: 414 KCLILPD 420
K L+
Sbjct: 259 KALLCEH 265
Score = 39.3 bits (90), Expect = 9e-04
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 3/99 (3%)
Query: 16 QWAKEHTEILKTKLTELLGDNG--VLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFP 73
+ E+ + + VL+ P A +Y L+N LDFP
Sbjct: 409 WKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLG-PALDLNTPGRATGAISYTVLYNCLDFP 467
Query: 74 VTNVPVGLDGKGLPLGDRVFFSTAGTVTGVRLDSIPEQA 112
VPV ++ G + + L + +
Sbjct: 468 AGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNS 506
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 119 bits (297), Expect = 2e-29
Identities = 68/335 (20%), Positives = 123/335 (36%), Gaps = 19/335 (5%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIE---QVNPYLNAMVDTRYTEALEEAKAADQKIA 244
+ ++ + S + QA+++RI + P L A+++ +AL+EA D++
Sbjct: 8 DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNP-DALKEAAERDRERR 66
Query: 245 LEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGN 304
P G+P K++ ++ + G LA + DAY+V R++ AG ++LG
Sbjct: 67 DGRLRG--PLHGIPLLLKDNINAAPMATSAGSLALQ-GFRPDDAYLVRRLRDAGAVVLGK 123
Query: 305 TNIPELL------WSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLG 358
TN+ E + GQ+ NPY + + SS G A V+A + + +GT+
Sbjct: 124 TNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETD 183
Query: 359 GSNRIPALYCGVYGHKLTTGSVNSRGIYGRD------GKEGKSMLAAGPIVKHAEDLLPY 412
GS PA GV G K T G V+ GI G +S+ A ++
Sbjct: 184 GSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDA 243
Query: 413 SKCLILPDKLPAYNFDKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSH 472
Y++ +D L+ + + +
Sbjct: 244 DPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVV 303
Query: 473 SEPEDLSHIKQFRLGYDVWRYWVSKEKDDFFSDHY 507
E + + Y + +F+ H
Sbjct: 304 VPVELPNQGAWAEAERTLLLYEFKAGLERYFNTHR 338
Score = 40.1 bits (92), Expect = 5e-04
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 38 VLVFPAAPESAPYHYATFFRPYNFTYWALFNILDFPVTNVPVGLDGKGLPLG 89
LV P + P + ++ + +P VP+G GLP+G
Sbjct: 408 ALVAPTTGVAWPIRSEG--DDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVG 456
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 90.9 bits (224), Expect = 3e-20
Identities = 60/320 (18%), Positives = 107/320 (33%), Gaps = 29/320 (9%)
Query: 188 SATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAKAADQKIALEE 247
S + ++I ++ + IE ++A + + A+A
Sbjct: 3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHA-----FVRHDKSARAQA------- 50
Query: 248 DISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTAGGILLGNTNI 307
P G+ K+ + +G +G + +DA +V +K A G T I
Sbjct: 51 ---SGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRA-----GATII 102
Query: 308 PELLWSESRNMVYGQSNNPYNLCRTTGASSGGEACLVSACGSVLGLGTDLGGSNRIPALY 367
+ + + + NP+N + G SS G A V A L LGT GGS PA Y
Sbjct: 103 GKTTTTAFASRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAY 162
Query: 368 CGVYGHKLTTGSVNSRGIYGRDGKEGKSMLAAGPIVKHAEDLLPYSKCLILPDKLPAYNF 427
CG K + ++ G AEDL + + F
Sbjct: 163 CGTAAIKPS----FRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSE-----F 213
Query: 428 DKSVDLAKLKVFYVEEPGDMKVSPMSKDMIQAIRKCVNALKVVSHSEPEDLSHIKQFRLG 487
V ++ V + V P ++ +QA K + + + +R+
Sbjct: 214 SGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIH 273
Query: 488 YDVWRYWVSKEKDDFFSDHY 507
+ + + FS+H+
Sbjct: 274 PIIQDFEAHRALAWEFSEHH 293
Score = 44.3 bits (103), Expect = 2e-05
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 9 CRMVPSDQWAKEHTEILKTKLTELLGDNGVLVFPAAPESAPYHYATFFRPYNFTYWALFN 68
A+ + +L E+ VL+ +AP +AP + Y L+
Sbjct: 309 GLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALA--STGDPRYNRLWT 366
Query: 69 ILDFPVTNVPVGLDGKGLPLG 89
++ P NVPV G GLP+G
Sbjct: 367 LMGNPCVNVPVLKVG-GLPIG 386
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
[TaxId: 9606]}
Length = 187
Score = 28.7 bits (64), Expect = 1.4
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 116 FWSKKCEDALRGMCLR-------SFWETLFSSFSKRWFKGIRRVMTGFGDGQRWFKGIRR 168
F ALR + + +F++R+ V +
Sbjct: 74 FTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIM 133
Query: 169 VMTDEAFPLPPVKNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQ 216
+ TD P V++K+ LE + + I E+++ + I
Sbjct: 134 LNTD--LHNPNVRDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 179
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 28.1 bits (62), Expect = 1.5
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 181 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTE 231
+ AT IA +IR K+ + + +N A+ + +
Sbjct: 18 SGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 68
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 26.5 bits (58), Expect = 5.3
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 181 KNKIVLESATQIAKKIRNKNITSVEVVQAFIERIEQVN 218
K + AT++A+++R K+ + I +N
Sbjct: 21 TGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLN 58
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal
domains {Red sea bream (Chrysophrys major) [TaxId:
143350]}
Length = 101
Score = 25.4 bits (56), Expect = 7.2
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 68 NILDFPVTNVPVGLDGKGLPLGDRVFFSTA----GTVTGVRLDSIPEQA 112
N L P+ L+G GL ++ + A G V+ V+L P +
Sbjct: 26 NPLPVPLKGGVFTLEGAGLLSATQIHVNGAVAPSGKVS-VKLSFSPMRT 73
>d2ebfx1 a.296.1.1 (X:575-874) Dermonecrotic toxin, ToxA
{Pasteurella multocida [TaxId: 747]}
Length = 300
Score = 26.5 bits (58), Expect = 7.5
Identities = 24/151 (15%), Positives = 43/151 (28%), Gaps = 33/151 (21%)
Query: 180 VKNKIVLESATQIAKKIR--NKNITSVEVVQAFIERIEQVNPYLNAMVDTRYTEALEEAK 237
V K + ES +I K++ + + E E +E ++ Y + + A E
Sbjct: 28 VIGKPIGESYKRILAKLQRIHNSNILDERQGLMHELMELIDLYEESQPSSERLNAFRE-- 85
Query: 238 AADQKIALEEDISDKPYLGVPFTSKESTACKGLSNTLGLLARKGKKADADAYIVERVKTA 297
L + YL K+ + + KG A + A
Sbjct: 86 -------LRTQLEKALYLPEMEALKKQ---------ILQIPNKGSGAARFLLRTAMNEMA 129
Query: 298 GGILLGNTNIPELLWSESRNMVYGQSN-NPY 327
G SES + + +
Sbjct: 130 GK------------TSESTADLIRFALQDTV 148
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,968,108
Number of extensions: 94107
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 16
Length of query: 507
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 418
Effective length of database: 1,185,626
Effective search space: 495591668
Effective search space used: 495591668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)