BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7562
(582 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 13/196 (6%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMA-RDQ 400
S+ D+ +KV YSI A +P +FRI++ +G + V +PLDRE ++L+ A +
Sbjct: 32 SNKDRFNKVYYSITGQGADNP-PQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSEN 90
Query: 401 GTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHG---EN 457
G+P + ++INV+D ND+ P+F + +G V E GT ++ V ATD D N
Sbjct: 91 GSPVEEPM-EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLN 149
Query: 458 GVVTYSIASGN----IGNVFTMDPILGTIQ-TARPLDLSLMSEYMLLVKATDQGAPPLAA 512
GV++YSI + I N+FT++ G I LD EY L V+ATD L+
Sbjct: 150 GVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSV 209
Query: 513 TVPVQIIVVMADNDPP 528
I + A+++ P
Sbjct: 210 EGKAIIQITDANDNAP 225
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVL-----YSI--H 357
+ + V+D N++RP TQ ++ ++ E V G++++ V+A+D D L YSI
Sbjct: 100 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 159
Query: 358 HAQSPLSAALFRIDFHSGALS-VAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVL 416
+ P+ LF I+ +G +S + LDRE + LT+ A D + I +
Sbjct: 160 DPEEPI-PNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 218
Query: 417 DSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDH----GENGVVTYSIASGNIGNV 472
D+ND+ P F V E + +G + ++ TD D V + G N+
Sbjct: 219 DANDNAPIFDPKTYTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 277
Query: 473 FTMDPI--LGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVP 515
T DP G + TA+ LD L +Y+L + T + A P + +P
Sbjct: 278 -TTDPESNQGILTTAKGLDFELRKQYVLQI--TVENAEPFSVPLP 319
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 50/267 (18%)
Query: 200 LDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVP-TF 258
LD E P VQ TDL L+ + K I+++TD ND P F Y + LVP
Sbjct: 185 LDREKFPEYTLTVQATDLEGAGLSVE--GKAIIQITDANDNAPIFDPKTY--TALVPENE 240
Query: 259 TNVAVLQFS------------QDVYNVSILVPTFTNVAV-LQLNSG----ETNCSHQWSS 301
V + S Q VY + + F N+ + N G +
Sbjct: 241 IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRK 300
Query: 302 RIWLHVTVV---------------------DVNEHRPILTQSLYETNISESVPVGSEILK 340
+ L +TV DVNE P ++ ++SE + G +I+
Sbjct: 301 QYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIIS 359
Query: 341 VAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESL----SHHLLTIM 396
+ A D D++ S P A ++ +G ++ LDRES + + + ++
Sbjct: 360 LVAQDPDKQQIQKLSYFIGNDP--ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 417
Query: 397 ARDQGTPAKRNFARVSINVLDSNDHPP 423
D G + ++VLD ND+ P
Sbjct: 418 VTDDGVSVGTGTGTLILHVLDVNDNGP 444
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 460 VTYSIASGNIGN----VFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVP 515
V YSI N VF ++ G + RPLD +Y+L A + P+ +
Sbjct: 40 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 99
Query: 516 VQIIVVMADNDPPRXXXXXXXXXXXXXXPPGTVVRHIEARSTSS--------LVFEIIRG 567
+ I V+ +++ P+ PGT V + A L + I++
Sbjct: 100 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 159
Query: 568 DSDD----MFSINK 577
D ++ +F+IN+
Sbjct: 160 DPEEPIPNLFTINR 173
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 329 SESVPVGSEILKVAASDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRE 386
+E P ++++ S+ D+ +KV YSI A +P +FRI++ +G + V +PLDRE
Sbjct: 167 NERGPFPKRLVQIK-SNKDRFNKVYYSITGQGADNP-PQGVFRIEWETGWMLVTRPLDRE 224
Query: 387 SLSHHLLTIMA-RDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIV 445
++L+ A + G+P + ++INV+D ND+ P+F + +G V E GT ++
Sbjct: 225 EYDKYVLSSHAVSENGSPVEEPM-EITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVM 283
Query: 446 QVVATDRDHG---ENGVVTYSIASGN----IGNVFTMDPILGTIQ-TARPLDLSLMSEYM 497
V ATD D NGV++YSI + I N+FT++ G I LD EY
Sbjct: 284 AVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYT 343
Query: 498 LLVKATDQGAPPLAATVPVQIIVVMADNDPP 528
L V+ATD L+ I + A+++ P
Sbjct: 344 LTVQATDLEGAGLSVEGKAIIQITDANDNAP 374
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVL-----YSI--H 357
+ + V+D N++RP TQ ++ ++ E V G++++ V+A+D D L YSI
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308
Query: 358 HAQSPLSAALFRIDFHSGALS-VAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVL 416
+ P+ LF I+ +G +S + LDRE + LT+ A D + I +
Sbjct: 309 DPEEPI-PNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 367
Query: 417 DSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDH----GENGVVTYSIASGNIGNV 472
D+ND+ P F V E + +G + ++ TD D V + G N+
Sbjct: 368 DANDNAPIFDPKTYTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 426
Query: 473 FTMDPI--LGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVP 515
T DP G + TA+ LD L +Y+L + T + A P + +P
Sbjct: 427 -TTDPESNQGILTTAKGLDFELRKQYVLQI--TVENAEPFSVPLP 468
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 50/267 (18%)
Query: 200 LDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVP-TF 258
LD E P VQ TDL L+ + K I+++TD ND P F Y + LVP
Sbjct: 334 LDREKFPEYTLTVQATDLEGAGLSVE--GKAIIQITDANDNAPIFDPKTY--TALVPENE 389
Query: 259 TNVAVLQFS------------QDVYNVSILVPTFTNVAV-LQLNSG----ETNCSHQWSS 301
V + S Q VY + + F N+ + N G +
Sbjct: 390 IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRK 449
Query: 302 RIWLHVTVV---------------------DVNEHRPILTQSLYETNISESVPVGSEILK 340
+ L +TV DVNE P ++ ++SE + G +I+
Sbjct: 450 QYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIIS 508
Query: 341 VAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESL----SHHLLTIM 396
+ A D D++ S P A ++ +G ++ LDRES + + + ++
Sbjct: 509 LVAQDPDKQQIQKLSYFIGNDP--ARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566
Query: 397 ARDQGTPAKRNFARVSINVLDSNDHPP 423
D G + ++VLD ND+ P
Sbjct: 567 VTDDGVSVGTGTGTLILHVLDVNDNGP 593
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 16/134 (11%)
Query: 460 VTYSIASGNIGN----VFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVP 515
V YSI N VF ++ G + RPLD +Y+L A + P+ +
Sbjct: 189 VYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME 248
Query: 516 VQIIVVMADNDPPRXXXXXXXXXXXXXXPPGTVVRHIEARSTSS--------LVFEIIRG 567
+ I V+ +++ P+ PGT V + A L + I++
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308
Query: 568 DSDD----MFSINK 577
D ++ +F+IN+
Sbjct: 309 DPEEPIPNLFTINR 322
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 24/233 (10%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSD-----QESKVLYSIHHAQS 361
+ V D+N++ P Y + E +G+ + V A+D+D +K++YSI Q
Sbjct: 94 IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ- 152
Query: 362 PLSAALFRIDFHSGALSVAQP-LDRESLSHHLLTIMARDQG--TPAKRNFARVSINVLDS 418
F I+ + + A P +DRE+ +L+ I A+D G + +++ + D
Sbjct: 153 ----PYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDV 208
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPI 478
ND+PP+FA SL V E +GT I +V A D+D GEN +Y I G+ +F +
Sbjct: 209 NDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSD 268
Query: 479 L----GTIQTARPLDLSLMSEYMLLVKATD-------QGAPPLAATVPVQIIV 520
G I+ +PLD Y L V+A + P T V+I+V
Sbjct: 269 AQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 14/224 (6%)
Query: 364 SAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRN-FARVSINVLDSNDHP 422
+ +F+I+ +G + + LDRE + + LT A D T + I V D ND+
Sbjct: 44 AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNA 103
Query: 423 PEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENGVVTYSIASGNIGNVFTMDPIL 479
PEF V E S +GT++ V ATD D +G + + YSI G F+++P
Sbjct: 104 PEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPET 161
Query: 480 GTIQTARP-LDLSLMSEYMLLVKATDQG--APPLAATVPVQIIVVMADNDPPRXXXXXXX 536
I+TA P +D EY+++++A D G + L+ T + + + +++PP+
Sbjct: 162 AIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYH 221
Query: 537 XXXXXXXPPGTVVRHIEAR-----STSSLVFEIIRGDSDDMFSI 575
GT + ++A + ++II GD +F I
Sbjct: 222 FSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEI 265
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 124/309 (40%), Gaps = 82/309 (26%)
Query: 130 DPDGDTLWYRIVDGDPNST-FSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGR 188
DP + Y I+ GD T F I + G++ +R+D E +A+YTL
Sbjct: 29 DPGSKKIKY-ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTL-------------- 73
Query: 189 HRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDV 248
T +D E+ +E ++ I++V D ND P+F
Sbjct: 74 -------TAQAVDFETNKPLE----------------PPSEFIIKVQDINDNAPEFLNGP 110
Query: 249 YN-----VSILVPTFTNVAVLQFSQDVY-NVSILV-------PTFT---NVAVLQ--LNS 290
Y+ +SIL + TNV VY N + LV P F+ A+++ L +
Sbjct: 111 YHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPN 170
Query: 291 GETNCSHQW----------------SSRIWLHVTVVDVNEHRPILTQSLYETNISESVPV 334
+ ++ S L VT+ DVN++ P QSLY ++ E V +
Sbjct: 171 MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVL 230
Query: 335 GSEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRI----DFHSGALSVAQPLDRESL 388
G+ I +V A+D D + ++ Y I ALF I G + + +PLD E+
Sbjct: 231 GTAIGRVKANDQDIGENAQSSYDIIDGD---GTALFEITSDAQAQDGVIRLRKPLDFETK 287
Query: 389 SHHLLTIMA 397
+ L + A
Sbjct: 288 KSYTLKVEA 296
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 17 VRATDHGSPNQSSTARVSIQVVR-LPDESKNPPT--IKS--PDQRVEVTENDAVGFLVAL 71
V ATD P ++A++ ++ P S P T IK+ P+ E E +LV +
Sbjct: 128 VTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPNMDREAKEE----YLV-V 182
Query: 72 IQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDP 131
IQA D G + L D + NPP V E+ +G + ++A+D
Sbjct: 183 IQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQ 242
Query: 132 D-GDTLW--YRIVDGDPNSTFSIGNDK----GNVLLARRVDWETQAQYTLNISVSDGIH 183
D G+ Y I+DGD + F I +D G + L + +D+ET+ YTL + ++ IH
Sbjct: 243 DIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAAN-IH 300
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 12/195 (6%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIVV-MADNDP 527
I V + DN P
Sbjct: 205 AKAVITVKDINDNAP 219
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 103/211 (48%), Gaps = 13/211 (6%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PLS-AALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSN 419
L +F ++ +G +SV LDRES + L + A D A+ I V D N
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDIN 215
Query: 420 DHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGV--VTYSIASG-NIGNVFTMD 476
D+ P F S +G+V E + V I + TD D Y++ + + V D
Sbjct: 216 DNAPVFNPSTYQGQVPE-NEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTD 274
Query: 477 PIL--GTIQTARPLDLSLMSEYMLLVKATDQ 505
P G ++TA+ LD +Y+L V+ ++
Sbjct: 275 PTTNDGILKTAKGLDFEAKQQYILHVRVENE 305
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/335 (20%), Positives = 127/335 (37%), Gaps = 63/335 (18%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSILV---- 277
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVS 152
Query: 278 --------------------------------PTFTNVAVLQLNSGETNCSHQWSSRIWL 305
PT+T V GE S+
Sbjct: 153 QDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEG-----LSTTAKA 207
Query: 306 HVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQES----KVLYSIHHAQS 361
+TV D+N++ P+ S Y+ + E+ V + I + +D D + K +Y++ +
Sbjct: 208 VITVKDINDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPD 266
Query: 362 PLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNF---ARVSINVLDS 418
+ + G L A+ LD E+ ++L + ++ P + + +
Sbjct: 267 QQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENE-EPFEGSLVPSTATVTVDVVD 325
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPI 478
+ P F + + V E VG I A + D + +TY I + N ++P
Sbjct: 326 VNEAPIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWR-DTANWLEINPE 384
Query: 479 LGTIQTARPLDLS-----LMSEYMLLVKATDQGAP 508
G I T +D S Y+ L+ ATD G+P
Sbjct: 385 TGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSP 419
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 87/251 (34%), Gaps = 57/251 (22%)
Query: 200 LDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVY---------N 250
LD ES P VQ DL L+ T AK ++ V D ND P F+ Y N
Sbjct: 179 LDRESYPTYTLVVQAADLQGEGLS--TTAKAVITVKDINDNAPVFNPSTYQGQVPENEVN 236
Query: 251 VSIL-----------VPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNCSHQW 299
I P + V + D V + PT TN +L+ G +
Sbjct: 237 ARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPT-TNDGILKTAKG---LDFEA 292
Query: 300 SSRIWLHVTVVD--------------------VNEHRPILTQSLYETNISESVPVGSEIL 339
+ LHV V + PI + + E VG EI
Sbjct: 293 KQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQEIT 352
Query: 340 KVAASDSD--QESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSH-----HL 392
A + D + K+ Y I +A I+ +GA+ +DRE H ++
Sbjct: 353 SYTAREPDTFMDQKITYRIWRD----TANWLEINPETGAIFTRAEMDREDAEHVKNSTYV 408
Query: 393 LTIMARDQGTP 403
I+A D G+P
Sbjct: 409 ALIIATDDGSP 419
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 12/195 (6%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 28 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 86
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 87 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 146
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 147 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 206
Query: 514 VPVQIIVV-MADNDP 527
I V + DN P
Sbjct: 207 AKAVITVKDINDNAP 221
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 7/129 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 157
Query: 362 PLS-AALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSN 419
L +F ++ +G +SV LDRES + L + A D A+ I V D N
Sbjct: 158 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDIN 217
Query: 420 DHPPEFATS 428
D+ P F S
Sbjct: 218 DNAPVFNPS 226
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 200 LDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFS 245
LD ES P VQ DL L+ T AK ++ V D ND P F+
Sbjct: 181 LDRESYPTYTLVVQAADLQGEGLS--TTAKAVITVKDINDNAPVFN 224
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 148
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 25 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 83
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 84 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 143
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 144 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 203
Query: 514 VPVQIIV 520
I V
Sbjct: 204 AKAVITV 210
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 95 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 154
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 155 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 212
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 92 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 145
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVDTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 23/153 (15%)
Query: 443 NIVQVVATDRDHGENGVVTYSIASGNIGN----VFTMDPILGTIQTARPLDLSLMSEYML 498
N+VQ+ ++RD V YSI VF ++ G ++ +PLD +++Y+L
Sbjct: 20 NLVQI-KSNRDKETK--VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYIL 76
Query: 499 LVKATDQGAPPLAATVPVQIIVVMAD--NDPPRXXXXXXXXXXXXXXPPGTVVRHIEARS 556
A A P++I++ + D ++ P PGT V + A
Sbjct: 77 YSHAVSSNGE--AVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATD 134
Query: 557 T--------SSLVFEIIRGDSD----DMFSINK 577
+++ + I+ D + +MF++N+
Sbjct: 135 ADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNR 167
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 28 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 86
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 87 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 146
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 147 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 206
Query: 514 VPVQIIV 520
I V
Sbjct: 207 AKAVITV 213
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 157
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 158 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 215
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 148
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 27 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 85
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 86 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 145
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 146 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 205
Query: 514 VPVQIIV 520
I V
Sbjct: 206 AKAVITV 212
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 97 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 156
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSN 419
L +F ++ +G +SV LDRES + L + A D A+ I V D N
Sbjct: 157 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDIN 216
Query: 420 DH 421
D+
Sbjct: 217 DN 218
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 94 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 147
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 93/187 (49%), Gaps = 11/187 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 26 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + +G V E + GT++++V ATD D + N
Sbjct: 85 GEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPPLAAT 513
+ Y+I S + N+FT++ G I LD Y L+V+A D L+ T
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT 204
Query: 514 VPVQIIV 520
I V
Sbjct: 205 AKAVITV 211
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDP 155
Query: 362 PL-SAALFRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 156 ELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 19/151 (12%)
Query: 443 NIVQVVATDRDHGENGVVTYSIASGNIGN----VFTMDPILGTIQTARPLDLSLMSEYML 498
N+VQ+ ++RD V YSI VF ++ G ++ +PLD +++Y+L
Sbjct: 20 NLVQI-KSNRDKETK--VFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYIL 76
Query: 499 LVKATDQGAPPLAATVPVQIIVVMADNDPPRXXXXXXXXXXXXXXPPGTVVRHIEARST- 557
A +A + + I V +++ P PGT V + A
Sbjct: 77 YSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 136
Query: 558 -------SSLVFEIIRGDSD----DMFSINK 577
+++ + I+ D + +MF++N+
Sbjct: 137 DDVNTYNAAIAYTIVSQDPELPHKNMFTVNR 167
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S+ +V++ S + YN +I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 100/214 (46%), Gaps = 13/214 (6%)
Query: 317 PILTQSLYETN--ISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHS 374
P T ++T ISE PVGS + ++ A D D + +++ + ++ + F ++ +
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND-PLVFGVSGEEA---SRFFAVEPDT 61
Query: 375 GALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRV 434
G + + QPLDRE+ S + D R +V+I V D ND+ P F R+
Sbjct: 62 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQPYSVRI 118
Query: 435 FETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMS 494
E + VGT I V ATD D G G V YS + F +D G + + LD +
Sbjct: 119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQ 176
Query: 495 EYMLLVKATDQGAP-PLAATVPVQIIVV-MADND 526
Y L V ATDQ PL+ + II+ M D D
Sbjct: 177 AYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 297 HQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLY 354
HQ +++ V DVN++ P Y I E+ PVG+ I V A+D D VLY
Sbjct: 87 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 146
Query: 355 SIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQ-GTPAKRNFARVSI 413
S Q P + F ID G ++V Q LD E + LT+ A DQ T A ++I
Sbjct: 147 SF---QPP--SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAI 201
Query: 414 NVLDSND 420
+ D D
Sbjct: 202 IITDMQD 208
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 96 DESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPD---GDTLWYRIVDGDPNSTFSIG 152
D + N PT + V + EN VG + ++ A+DPD G ++ Y P+ F+I
Sbjct: 101 DVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAID 158
Query: 153 NDKGNVLLARRVDWETQAQYTLNISVSD 180
+ +G V + + +D+E Y L ++ +D
Sbjct: 159 SARGIVTVIQELDYEVTQAYQLTVNATD 186
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 108 DQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWE 167
D + ++E+ VG V + A D D D L + + + + F++ D G V L + +D E
Sbjct: 14 DTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 73
Query: 168 TQAQYTLNISVSD 180
T++++T+ SVSD
Sbjct: 74 TKSEFTVEFSVSD 86
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 71
EF + +DH T +V+IQV D + N PT + V + EN VG + +
Sbjct: 77 EFTVEFSVSDHQG---VITRKVNIQV---GDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 130
Query: 72 IQASDPD---GDTLWY 84
+ A+DPD G ++ Y
Sbjct: 131 VNATDPDLGAGGSVLY 146
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 12/207 (5%)
Query: 317 PILTQSLYETN--ISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHS 374
P T ++T ISE PVGS + ++ A D D + +++ + ++ + F ++ +
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND-PLVFGVSGEEA---SRFFAVEPDT 62
Query: 375 GALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRV 434
G + + QPLDRE+ S + D R +V+I V D ND+ P F R+
Sbjct: 63 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQPYSVRI 119
Query: 435 FETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMS 494
E + VGT I V ATD D G G V YS + F +D G + + LD +
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQ 177
Query: 495 EYMLLVKATDQGAP-PLAATVPVQIIV 520
Y L V ATDQ PL+ + II+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIII 204
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 297 HQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLY 354
HQ +++ V DVN++ P Y I E+ PVG+ I V A+D D VLY
Sbjct: 88 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 355 SIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQ 400
S Q P + F ID G ++V Q LD E + LT+ A DQ
Sbjct: 148 SF---QPP--SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 96 DESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPD---GDTLWYRIVDGDPNSTFSIG 152
D + N PT + V + EN VG + ++ A+DPD G ++ Y P+ F+I
Sbjct: 102 DVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAID 159
Query: 153 NDKGNVLLARRVDWETQAQYTLNISVSD 180
+ +G V + + +D+E Y L ++ +D
Sbjct: 160 SARGIVTVIQELDYEVTQAYQLTVNATD 187
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 108 DQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWE 167
D + ++E+ VG V + A D D D L + + + + F++ D G V L + +D E
Sbjct: 15 DTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 168 TQAQYTLNISVSD 180
T++++T+ SVSD
Sbjct: 75 TKSEFTVEFSVSD 87
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 71
EF + +DH T +V+IQV D + N PT + V + EN VG + +
Sbjct: 78 EFTVEFSVSDHQG---VITRKVNIQV---GDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 131
Query: 72 IQASDPD---GDTLWY 84
+ A+DPD G ++ Y
Sbjct: 132 VNATDPDLGAGGSVLY 147
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 97/207 (46%), Gaps = 12/207 (5%)
Query: 317 PILTQSLYETN--ISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHS 374
P T ++T ISE PVGS + ++ A D D + +++ + ++ + F ++ +
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND-PLVFGVPGEEA---SRFFAVEPDT 62
Query: 375 GALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRV 434
G + + QPLDRE+ S + D R +V+I V D ND+ P F R+
Sbjct: 63 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITR---KVNIQVGDVNDNAPTFHNQPYSVRI 119
Query: 435 FETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMS 494
E + VGT I V ATD D G G V YS + F +D G + + LD +
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQ 177
Query: 495 EYMLLVKATDQGAP-PLAATVPVQIIV 520
Y L V ATDQ PL+ + II+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIII 204
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 297 HQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLY 354
HQ +++ V DVN++ P Y I E+ PVG+ I V A+D D VLY
Sbjct: 88 HQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 355 SIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQ 400
S Q P + F ID G ++V Q LD E + LT+ A DQ
Sbjct: 148 SF---QPP--SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 96 DESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPD---GDTLWYRIVDGDPNSTFSIG 152
D + N PT + V + EN VG + ++ A+DPD G ++ Y P+ F+I
Sbjct: 102 DVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAID 159
Query: 153 NDKGNVLLARRVDWETQAQYTLNISVSD 180
+ +G V + + +D+E Y L ++ +D
Sbjct: 160 SARGIVTVIQELDYEVTQAYQLTVNATD 187
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 108 DQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWE 167
D + ++E+ VG V + A D D D L + + + + F++ D G V L + +D E
Sbjct: 15 DTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 168 TQAQYTLNISVSD 180
T++++T+ SVSD
Sbjct: 75 TKSEFTVEFSVSD 87
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 71
EF + +DH T +V+IQV D + N PT + V + EN VG + +
Sbjct: 78 EFTVEFSVSDHQG---VITRKVNIQV---GDVNDNAPTFHNQPYSVRIPENTPVGTPIFI 131
Query: 72 IQASDPD---GDTLWY 84
+ A+DPD G ++ Y
Sbjct: 132 VNATDPDLGAGGSVLY 147
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E KV YSI A +P +F I+ +G L V +PLDRE ++ + L A
Sbjct: 26 SNKDKEGKVFYSITGQGADTP-PVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSN 84
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENG 458
A + + I V D ND+ PEF + KG V E + GT++++V ATD D + N
Sbjct: 85 GNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNA 144
Query: 459 VVTYSIASGNI----GNVFTMDPILGTIQTARP-LDLSLMSEYMLLVKATD-QG 506
+ Y+I S + N+FT++ G I LD Y L+V+A D QG
Sbjct: 145 AIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQG 198
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHAQS 361
+TV D N+++P TQ +++ ++ E G+ +++V A+D+D + + + Y+I
Sbjct: 96 ITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDP 155
Query: 362 PL-SAALFRIDFHSGALSVAQP-LDRESLSHHLLTIMARD-QG 401
L +F I+ ++G +SV LDRES + L + A D QG
Sbjct: 156 ELPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQG 198
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQ-------DVYNVSI 275
++++ VTD ND P+F+Q+V+ S++ +V++ + + YN +I
Sbjct: 93 EILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAI 146
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 96/207 (46%), Gaps = 12/207 (5%)
Query: 317 PILTQSLYETN--ISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHS 374
P T ++T ISE PVGS + ++ A D D + +++ + ++ + F ++ +
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND-PLVFGVSGEEA---SRFFAVEPDT 62
Query: 375 GALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRV 434
G + + QPLDRE+ S + D R +V+I V ND+ P F R+
Sbjct: 63 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITR---KVNIQVGGVNDNAPTFHNQPYSVRI 119
Query: 435 FETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMS 494
E + VGT I V ATD D G G V YS + F +D G + + LD +
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQ 177
Query: 495 EYMLLVKATDQGAP-PLAATVPVQIIV 520
Y L V ATDQ PL+ + II+
Sbjct: 178 AYQLTVNATDQDKTRPLSTLANLAIII 204
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 297 HQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLY 354
HQ +++ V VN++ P Y I E+ PVG+ I V A+D D VLY
Sbjct: 88 HQGVITRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLY 147
Query: 355 SIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQ 400
S Q P + F ID G ++V Q LD E + LT+ A DQ
Sbjct: 148 SF---QPP--SPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQ 188
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPD---GDTLWYRIVDGDPNSTFSIGNDKG 156
N PT + V + EN VG + ++ A+DPD G ++ Y P+ F+I + +G
Sbjct: 106 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF--QPPSPFFAIDSARG 163
Query: 157 NVLLARRVDWETQAQYTLNISVSD 180
V + + +D+E Y L ++ +D
Sbjct: 164 IVTVIQELDYEVTQAYQLTVNATD 187
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 108 DQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWE 167
D + ++E+ VG V + A D D D L + + + + F++ D G V L + +D E
Sbjct: 15 DTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 168 TQAQYTLNISVSD 180
T++++T+ SVSD
Sbjct: 75 TKSEFTVEFSVSD 87
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 71
EF + +DH T +V+IQV + D N PT + V + EN VG + +
Sbjct: 78 EFTVEFSVSDH---QGVITRKVNIQVGGVND---NAPTFHNQPYSVRIPENTPVGTPIFI 131
Query: 72 IQASDPD---GDTLWY 84
+ A+DPD G ++ Y
Sbjct: 132 VNATDPDLGAGGSVLY 147
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 103/209 (49%), Gaps = 14/209 (6%)
Query: 333 PVGSEILKVAASDSDQESKVLYSIHH--AQSPLSAALFRIDFHSGALSVAQPLDRESLSH 390
P E++++ SD D+ + YS+ A P +F I+ SG LSV +PLDRE ++
Sbjct: 16 PFPQELVRIR-SDRDKNLSLRYSVTGPGADQP-PTGIFIINPISGQLSVTKPLDRELIAR 73
Query: 391 HLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVAT 450
L A D N + INV+D ND+ PEF + G V E S GT ++ V A
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 451 DRD--HGENGVVTYSIASGNIG----NVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKAT 503
D D + NG++ Y I S N+FT++ G I T A LD + +Y L+++AT
Sbjct: 134 DADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
Query: 504 DQGAPP---LAATVPVQIIVVMADNDPPR 529
D P L+ T I V +++PP
Sbjct: 194 DMEGNPTYGLSNTATAVITVTDVNDNPPE 222
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 16/225 (7%)
Query: 296 SHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESK---- 351
+Q + I + + V+D+N++RP ++ ++ E G+ ++ V A D+D +
Sbjct: 85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGM 144
Query: 352 VLYSI-HHAQSPLSAALFRIDFHSG-ALSVAQPLDRESLSHHLLTIMARD-QGTP--AKR 406
+ Y I A S S +F I+ +G ++VA LDRE + + L I A D +G P
Sbjct: 145 LRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204
Query: 407 NFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD--HGENGVVTYSI 464
N A I V D ND+PPEF G V E + V + + TD+D H Y I
Sbjct: 205 NTATAVITVTDVNDNPPEFTAMTFYGEVPE-NRVDVIVANLTVTDKDQPHTPAWNAAYRI 263
Query: 465 ASGNIGNVFTM--DPIL--GTIQTARPLDLSLMSEYMLLVKATDQ 505
+ G+ F + DP G + +P+D ++L V A +Q
Sbjct: 264 SGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQ 308
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 18/260 (6%)
Query: 285 VLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAAS 344
++Q E N ++ S+ +TV DVN++ P T + + E+ V + + +
Sbjct: 189 IIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVT 247
Query: 345 DSDQESKVLYSIHHAQS---PLS--AALFRIDFHSGALSVAQPLDRESLSHHLLTIMARD 399
D DQ ++ + S P A L + + G ++V +P+D E+ +LT+ A +
Sbjct: 248 DKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAEN 307
Query: 400 QGTPAK------RNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD 453
Q AK ++ A VS+ V+D N++P FA + R E GT + + A D D
Sbjct: 308 QVPLAKGIQHPPQSTATVSVTVIDVNENP-YFAPNPKIIRQEEGLHAGTMLTTLTAQDPD 366
Query: 454 HGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLS----LMSEYMLLVKATDQGAPP 509
+ Y+ S + N +DP+ G I T LD + Y A+D G PP
Sbjct: 367 RYMQQNIRYTKLS-DPANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPP 425
Query: 510 LAATVPVQIIVVMADNDPPR 529
++ T +QI ++ +++ P+
Sbjct: 426 MSGTGTLQIYLLDINDNAPQ 445
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 85/355 (23%), Positives = 135/355 (38%), Gaps = 92/355 (25%)
Query: 123 VALIQASDPDG--DTLWYRIVDGDPNS----TFSIGNDKGNVL-LARRVDWETQAQYTLN 175
V I A DP+ L YRI+ P++ F+I N+ G+++ +A +D E QYTL
Sbjct: 130 VTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLI 189
Query: 176 ISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDL-GRPRLTSDTLAKVIVEV 234
I Q TD+ G P A ++ V
Sbjct: 190 I------------------------------------QATDMEGNPTYGLSNTATAVITV 213
Query: 235 TDTNDCPPQFSQDVY-------NVSILVPTFTNVAVLQFSQDVYNVS------------- 274
TD ND PP+F+ + V ++V T Q +N +
Sbjct: 214 TDVNDNPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFA 273
Query: 275 ILVPTFTN---VAVLQLNSGETN------------------CSHQWSSRIWLHVTVVDVN 313
IL +N V V++ ETN H S + VTV+DVN
Sbjct: 274 ILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVN 333
Query: 314 EHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFH 373
E+ P + E + G+ + + A D D+ + +I + + A +ID
Sbjct: 334 EN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQ--QNIRYTKLSDPANWLKIDPV 390
Query: 374 SGALSVAQPLDRES--LSHHLL--TIMARDQGTPAKRNFARVSINVLDSNDHPPE 424
+G ++ LDRES + +++ T +A D G P + I +LD ND+ P+
Sbjct: 391 NGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQ 445
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 61/206 (29%)
Query: 3 NIIVFVAG------QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQR 56
+II AG Q++ L+++ATD + + V+ + D + NPP +
Sbjct: 170 DIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFY 229
Query: 57 VEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTEN 116
EV EN V +VA + +D D + + W
Sbjct: 230 GEVPEN-RVDVIVANLTVTDKD------QPHTPAWNAA---------------------- 260
Query: 117 DAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGND----KGNVLLARRVDWETQAQY 172
YRI GDP F+I D G V + + +D+ET +
Sbjct: 261 ---------------------YRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMF 299
Query: 173 TLNISVSDGIHEWTG-RHRPSAIRTV 197
L ++ + + G +H P + TV
Sbjct: 300 VLTVAAENQVPLAKGIQHPPQSTATV 325
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Query: 333 PVGSEILKVAASDSDQESKVLYSIHH--AQSPLSAALFRIDFHSGALSVAQPLDRESLSH 390
P E++++ SD D+ + YS+ A P +F I+ SG LSV +PLDRE ++
Sbjct: 16 PFPQELVRIR-SDRDKNLSLRYSVTGPGADQP-PTGIFIINPISGQLSVTKPLDRELIAR 73
Query: 391 HLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVAT 450
L A D N + INV+D ND+ PEF + G V E S GT ++ V A
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 451 DRD--HGENGVVTYSIASGNIG----NVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKAT 503
D D + NG++ Y I S N+FT++ G I T A LD + +Y L+++AT
Sbjct: 134 DADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
Query: 504 D-QGAP 508
D +G P
Sbjct: 194 DMEGNP 199
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 296 SHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQ----ESK 351
+Q + I + + V+D+N++RP ++ ++ E G+ ++ V A D+D
Sbjct: 85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGM 144
Query: 352 VLYSI-HHAQSPLSAALFRIDFHSG-ALSVAQPLDRESLSHHLLTIMARD-QGTP--AKR 406
+ Y I A S S +F I+ +G ++VA LDRE + + L I A D +G P
Sbjct: 145 LRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204
Query: 407 NFARVSINVLD 417
N A I V D
Sbjct: 205 NTATAVITVTD 215
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 472 VFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVV-MADNDP 527
+F ++PI G + +PLD L++ + L A D + + + I V+ M DN P
Sbjct: 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Query: 333 PVGSEILKVAASDSDQESKVLYSIHH--AQSPLSAALFRIDFHSGALSVAQPLDRESLSH 390
P E++++ SD D+ + YS+ A P +F I+ SG LSV +PLDRE ++
Sbjct: 16 PFPQELVRIR-SDRDKNLSLRYSVTGPGADQP-PTGIFIINPISGQLSVTKPLDRELIAR 73
Query: 391 HLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVAT 450
L A D N + INV+D ND+ PEF + G V E S GT ++ V A
Sbjct: 74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 451 DRD--HGENGVVTYSIASGNIG----NVFTMDPILGTIQT-ARPLDLSLMSEYMLLVKAT 503
D D + NG++ Y I S N+FT++ G I T A LD + +Y L+++AT
Sbjct: 134 DADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQAT 193
Query: 504 D-QGAP 508
D +G P
Sbjct: 194 DMEGNP 199
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Query: 296 SHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQ----ESK 351
+Q + I + + V+D+N++RP ++ ++ E G+ ++ V A D+D
Sbjct: 85 GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGM 144
Query: 352 VLYSI-HHAQSPLSAALFRIDFHSG-ALSVAQPLDRESLSHHLLTIMARD-QGTP--AKR 406
+ Y I A S S +F I+ +G ++VA LDRE + + L I A D +G P
Sbjct: 145 LRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLS 204
Query: 407 NFARVSINVLD 417
N A I V D
Sbjct: 205 NTATAVITVTD 215
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 472 VFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVV-MADNDP 527
+F ++PI G + +PLD L++ + L A D + + + I V+ M DN P
Sbjct: 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 106
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 9/168 (5%)
Query: 364 SAALFRIDFHSGALSVAQPLDRESLSHHLLTIMA--RDQGTPAKRNFARVSINVLDSNDH 421
+ +F ID SG + + LDRE + + L A RD P + + + V D ND+
Sbjct: 45 AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPP-SEFIVKVQDINDN 103
Query: 422 PPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENGVVTYSIASGNIGNVFTMDPI 478
PPEF + V E S VGT+++QV A+D D +G + + YSI G F+++
Sbjct: 104 PPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQ 161
Query: 479 LGTIQTARP-LDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADN 525
G I+TA P +D EY ++++A D G + ++ + + D+
Sbjct: 162 TGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDD 209
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSD-----QESKVLYSIHHAQS 361
V V D+N++ P +Y N+ E VG+ +++V ASD+D +K++YSI Q
Sbjct: 95 VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ- 153
Query: 362 PLSAALFRIDFHSGALSVAQP-LDRESLSHHLLTIMARDQG 401
F ++ +G + A P +DRE+ + + I A+D G
Sbjct: 154 ----PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMG 190
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 40/142 (28%)
Query: 122 LVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDK-GNVLLARRVDWETQAQYTLNISVSD 180
LV + + GD I+ G+ T + +DK GN+ + +D E +AQYTL D
Sbjct: 21 LVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD 80
Query: 181 GIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDC 240
D RP + ++ IV+V D ND
Sbjct: 81 ----------------------------------RDTNRPL---EPPSEFIVKVQDINDN 103
Query: 241 PPQFSQDVYNVSILVPTFTNVA 262
PP+F ++Y+ + VP +NV
Sbjct: 104 PPEFLHEIYHAN--VPERSNVG 123
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 28 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 86
Query: 402 TPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD 453
A + + I V D ND+ PEF + +G V E + GT++++V ATD D
Sbjct: 87 GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE 349
+TV D N++RP TQ ++E +++E G+ ++KV+A+D+D +
Sbjct: 98 ITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD 140
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFS 267
++++ VTD ND P+F+Q+V+ S+ +V++ S
Sbjct: 95 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVS 133
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAASDSDQ--ESKVLYSIHHAQSPLSAALFRI 370
N++ P +S+YE +++E+ G+ IL++ A+D D ++ Y + A + L R+
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEY-VFGAATESVRRLLRL 66
Query: 371 DFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPP 423
D SG LSV +DRE ++ T+MARD+G P K + A V +N+ D ND+ P
Sbjct: 67 DETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTY--SIASGNIGNVFTMD 476
ND+ P F S+ + + E SA GT I+Q+ A D D G NG + Y A+ ++ + +D
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 477 PILGTIQTARPLDLSLMSEYMLLVKATDQGAPP 509
G + +D +++ V A D+G PP
Sbjct: 68 ETSGWLSVLHRIDREEVNQLRFTVMARDRGQPP 100
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 333 PVGSEILKVAASDSDQESKVLYSIHHA-QSPLSAALFRIDFHSGALSVAQPLDRESLSHH 391
P + KV S+ + +K S Q P +FRI+ SG +SV +PLDRE+++++
Sbjct: 16 PFPRSVGKVIRSEGTEGAKFRLSGKGVDQDP--KGIFRINEISGDVSVTRPLDREAIANY 73
Query: 392 LLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATD 451
L + D R+ I+V+D ND+ P F G V E S GT ++++ A D
Sbjct: 74 QLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFD 133
Query: 452 RD--HGENGVVTYSI----ASGNIGNVFTMDPILGTIQTARP---LDLSLMS--EYMLLV 500
D +N ++ Y+I + N+F +DP G I T LD M +Y L++
Sbjct: 134 ADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVI 193
Query: 501 KATDQGA 507
+A D G
Sbjct: 194 EAKDMGG 200
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 13/131 (9%)
Query: 283 VAVLQLNSGETNCSHQW-SSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKV 341
+A QL T+ S + + L ++V+D N++RP+ + Y ++ E P G+ ++++
Sbjct: 70 IANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRM 129
Query: 342 AASDSDQESK----VLYSIHHAQSPL--SAALFRIDFHSGAL-SVAQP--LDRESLS--H 390
A D+D S + Y+I Q+P S +F ID G + +V P LDRE++
Sbjct: 130 TAFDADDPSTDNALLRYNILK-QTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPK 188
Query: 391 HLLTIMARDQG 401
+ L I A+D G
Sbjct: 189 YELVIEAKDMG 199
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 136 LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD 180
L + VD DP F I G+V + R +D E A Y L + V+D
Sbjct: 37 LSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTD 81
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%)
Query: 471 NVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRX 530
+F ++ I G + RPLD ++ Y L V+ TD + V + I V+ +++ P
Sbjct: 48 GIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMF 107
Query: 531 XXXXXXXXXXXXXPPGTVVRHIEA 554
P GT V + A
Sbjct: 108 KEGPYVGHVMEGSPTGTTVMRMTA 131
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 200 LDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFT 259
LD E++ + V+VTDL + D ++ + V D ND P F + Y ++ + T
Sbjct: 65 LDREAIANYQLEVEVTDLSGKII--DGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPT 122
Query: 260 NVAVLQFS 267
V++ +
Sbjct: 123 GTTVMRMT 130
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 66/110 (60%), Gaps = 6/110 (5%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRI 370
N++RP+ + E +I E+ PVG+ ++++ A+D+D +++ Y +P + LF +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 371 DFHSGALSVAQPLDRESLSHHLLTIMARD-QGTPAKRNFARVSINVLDSN 419
+ +G ++V + LDRE + H +T++A D TPA+ A V+INV D N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPAR---ATVTINVTDVN 114
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASG---NIGNVFTM 475
ND+ P F V+ + E + VGT+++Q+ ATD D G N + Y + +F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 476 DPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQI 518
+ G I R LD + + + V A+D + P ATV + +
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINV 110
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPD-GDTLWYRIVDG-----DPNSTFSIGN 153
N P K V + EN VG V + A+D D G R + G F++ N
Sbjct: 10 NRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNN 69
Query: 154 DKGNVLLARRVDWETQAQYTLNISVSDG 181
G + + R +D E A + + + SDG
Sbjct: 70 TTGLITVQRSLDREETAIHKVTVLASDG 97
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Query: 367 LFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNF---ARVSINVLDSNDHPP 423
+F++ + G + + LDRE + + LT D+ R+ ++ I V D ND+ P
Sbjct: 45 IFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRN--NRSLEPPSKFIIKVSDINDNAP 102
Query: 424 EFATSLVKGRVFETSAVGTNIVQVVATDRDH---GENGVVTYSIASGNIGNVFTMDPILG 480
F + G V E S +GT++ +V A D D + VTY I GN FT+D G
Sbjct: 103 IFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN--EYFTVDD-SG 159
Query: 481 TIQTARP-LDLSLMSEYMLLVKATD 504
I TAR LD S Y ++VKA D
Sbjct: 160 VIFTARADLDRESQSAYEIIVKAKD 184
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAA 366
+ V D+N++ PI Q ++ ++ E +G+ + KV A D+D + ++ Q
Sbjct: 92 IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNE 151
Query: 367 LFRIDFHSGALSVAQP-LDRESLSHHLLTIMARDQ-GTPAKRNFARVSINVLD 417
F +D SG + A+ LDRES S + + + A+D G + + A V I + D
Sbjct: 152 YFTVD-DSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 200 LDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSI 253
LD E E + D R + + +K I++V+D ND P F Q ++N S+
Sbjct: 61 LDREKKAEYELTAHIIDR-RNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSV 113
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 13/195 (6%)
Query: 335 GSEILKVAASDSDQESKVLYSIHHAQSPLSAA-LFRIDFHSGALSVAQPLDRESLSHHLL 393
GS+ V SDQ+ + S+ + S A LF I+ ++G + + LDRE ++L
Sbjct: 15 GSDYQYVGKLHSDQD-RGDGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYIL 73
Query: 394 TIMA--RDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATD 451
A R G P + + I + D ND+ P F + V E + VGT +VQV ATD
Sbjct: 74 RAQAVNRRTGRPVEPE-SEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATD 132
Query: 452 RD---HGENGVVTYSIASGNIGNVFTMDPILGTIQTA-RPLDLSLMSEYMLLVKATDQGA 507
D +G + V YSI G F+++ G I+TA +D +Y ++++A D G
Sbjct: 133 ADDPTYGNSAKVVYSILQGQ--PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGG 190
Query: 508 P--PLAATVPVQIIV 520
L+ T V I +
Sbjct: 191 QMGGLSGTTTVNITL 205
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSD-----QESKVLYSIHHAQS 361
+ + D+N++ PI T+ +Y + E VG+ +++V A+D+D +KV+YSI Q
Sbjct: 94 IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQ- 152
Query: 362 PLSAALFRIDFHSGALSVA-QPLDRESLSHHLLTIMARDQG 401
F ++ +G + A +DRE+ + + I A+D G
Sbjct: 153 ----PYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMG 189
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 182 IHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTD--LGRPRLTSDTLAKVIVEVTDTND 239
I+E TG I+ LD E P Q + GRP + ++ I+++ D ND
Sbjct: 50 INENTGD-----IQATKRLDREEKPVYILRAQAVNRRTGRP---VEPESEFIIKIHDIND 101
Query: 240 CPPQFSQDVYNVSILVPTFTNVAVL 264
P F++DVY + VP +V
Sbjct: 102 NEPIFTKDVYTAT--VPEMADVGTF 124
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 92/204 (45%), Gaps = 14/204 (6%)
Query: 333 PVGSEILKVAASDSDQESKV-LYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHH 391
P ++ KV SD + SK L Q P FRI+ ++G++SV + LDRE+++ +
Sbjct: 17 PFPRDVGKVVDSDRPEGSKFRLTGKGVDQDP--KGTFRINENTGSVSVTRTLDRETIATY 74
Query: 392 LLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATD 451
L + D + + V+D ND+ P F G V E S GT ++++ A D
Sbjct: 75 QLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFD 134
Query: 452 RDH--GENGVVTYSIASGNIG----NVFTMDPILGTIQTARP---LDLSLMS--EYMLLV 500
D +N ++ Y+I N+F +DP G I T LD + +Y L++
Sbjct: 135 ADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELII 194
Query: 501 KATDQGAPPLAATVPVQIIVVMAD 524
+A D + T +V+ D
Sbjct: 195 EAQDMAGLDVGLTGTATATIVIDD 218
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 283 VAVLQLNSGETNCSHQ-WSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKV 341
+A QL T+ S + + L V V+D N++RPI + Y ++ E P G+ ++++
Sbjct: 71 IATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM 130
Query: 342 AASDSDQESK----VLYSIHHAQSP--LSAALFRIDFHSGAL-SVAQP--LDRESLSH-- 390
A D+D + + Y+I Q+P S +F ID G + +V P LDRE+L +
Sbjct: 131 TAFDADDPATDNALLRYNIRQ-QTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPK 189
Query: 391 HLLTIMARD 399
+ L I A+D
Sbjct: 190 YELIIEAQD 198
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%)
Query: 443 NIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKA 502
++ +VV +DR G +T + F ++ G++ R LD ++ Y L V+
Sbjct: 21 DVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVET 80
Query: 503 TDQGAPPLAATVPVQIIVVMADNDPPRXXXXXXXXXXXXXXPPGTVVRHIEA 554
TD L VP+++IV+ +++ P P GT V + A
Sbjct: 81 TDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTA 132
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 125 LIQASDPDGDT--LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD 180
++ + P+G L + VD DP TF I + G+V + R +D ET A Y L + +D
Sbjct: 25 VVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
Query: 317 PILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGA 376
P YE I E+ S+I+ + A S + ++ Y++ AQ A F I SG
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAK-SFADREIRYTLK-AQGQ-GAGTFNIGPTSGI 273
Query: 377 LSVAQPLDRESLS----HHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKG 432
+ +A+ LD E L + L+ D G + ++I V D ND+ P+F +
Sbjct: 274 VKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS--VDLTIRVTDVNDNAPKFELPDYQA 331
Query: 433 R-VFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLS 491
V E +GT+I++V A D D G N + Y ++ + F +D G I + LD
Sbjct: 332 HNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH----FAVDS-NGIIVNNKQLDAD 386
Query: 492 LMSEYM-LLVKATDQGAPPLAATVPVQI 518
+ Y +V A D+G PP + V++
Sbjct: 387 NNNAYYEFIVTAKDKGEPPKSGVATVRV 414
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 293 TNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYET-NISESVPVGSEILKVAASDSDQESK 351
T S +S+ + L + V DVN++ P Y+ N+ E +P+G+ IL+V A DSD S
Sbjct: 298 TEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSN 357
Query: 352 VLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRE-SLSHHLLTIMARDQGTPAKRNFAR 410
+ +S F +D +G + + LD + + +++ + A+D+G P K A
Sbjct: 358 A-----EIEYLVSDDHFAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVAT 411
Query: 411 VSI 413
V +
Sbjct: 412 VRV 414
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 374 SGALSVAQPLDRESLSHH-------LLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFA 426
+GA+ V + D E L ++T M + G N RV I V D ND PP F
Sbjct: 54 NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDN-QRVIILVKDVNDEPPYFI 112
Query: 427 TS-LVKGRVFETSAV-GTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQT 484
L V + +A T + + A D D N + Y I G F +D G ++T
Sbjct: 113 NRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRT 170
Query: 485 ARPLDL-SLMSEYMLLVKATDQGA 507
R DL L EY+L VKA DQ
Sbjct: 171 -RGTDLFQLDMEYVLYVKAEDQNG 193
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 329 SESVPVGSEILKVAASDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRE 386
+E P ++++ S+ D+E KV YSI A +P +F I+ +G L V +PLDRE
Sbjct: 16 NEKGPFPKNLVQIK-SNKDKEGKVFYSITGQGADTP-PVGVFIIERETGWLKVTEPLDRE 73
Query: 387 SLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDH 421
++ + L A A + + I V D ND+
Sbjct: 74 RIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 105
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG 401
S+ D+E+KV YSI A P +F I+ +G L V QPLDRE+++ ++L A
Sbjct: 30 SNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSN 88
Query: 402 TPAKRNFARVSINVLDS 418
A + + I V D+
Sbjct: 89 GNAVEDPMEIVITVTDA 105
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 333 PVGSEILKVAASDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSH 390
P E++++ S D+ + YS+ A P +F I+ SG LSV +PLDRE ++
Sbjct: 18 PFPQELVRIR-SGRDKNLSLRYSVTGPGADQP-PTGIFIINPISGQLSVTKPLDRELIAR 75
Query: 391 HLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEF 425
L A D N + INV+D ND+ PEF
Sbjct: 76 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 472 VFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVV-MADNDP 527
+F ++PI G + +PLD L++ + L A D + + + I V+ M DN P
Sbjct: 52 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 108
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 25/187 (13%)
Query: 339 LKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHS--------GALSVAQPLDRESLSH 390
++ +D D E K S+ + F+I + GA+ V + D E L
Sbjct: 9 IEFTEADGDTEGK---SVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 391 H-------LLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATS-LVKGRVFETSAV-G 441
++T M + G N RV I V D ND PP F L V + +A
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDN-QRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN 124
Query: 442 TNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDL-SLMSEYMLLV 500
T + + A D D N + Y I G F +D G ++T R DL L EY+L V
Sbjct: 125 TPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRT-RGTDLFQLDMEYVLYV 181
Query: 501 KATDQGA 507
KA DQ
Sbjct: 182 KAEDQNG 188
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLL 393
S+ D+E KV YSI A +P +F I+ +G L V +PLDRE ++ + L
Sbjct: 27 SNKDKEGKVFYSITGQGADTP-PVGVFIIERETGWLKVTEPLDRERIATYTL 77
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLL 393
S+ D+E KV YSI A +P +F I+ +G L V +PLDRE ++ + L
Sbjct: 27 SNKDKEGKVFYSITGQGADTP-PVGVFIIERETGWLKVTEPLDRERIATYTL 77
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 344 SDSDQESKVLYSI--HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLL 393
S+ D+E KV YSI A +P +F I+ +G L V +PLDRE ++ + L
Sbjct: 30 SNKDKEGKVFYSITGQGADTP-PVGVFIIERETGWLKVTEPLDRERIATYTL 80
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 317 PILTQSLYETN--ISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHS 374
P T ++T ISE PVGS + ++ A D D + V ++ F ++ +
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVF----GVSGEEASRFFAVEPDT 62
Query: 375 GALSVAQPLDRESLSHHLLTIMARD-QGTPAKR 406
G + + QPLDRE+ S + D QG ++
Sbjct: 63 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRK 95
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 108 DQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWE 167
D + ++E+ VG V + A D D D L + + + + F++ D G V L + +D E
Sbjct: 15 DTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRE 74
Query: 168 TQAQYTLNISVSD 180
T++++T+ SVSD
Sbjct: 75 TKSEFTVEFSVSD 87
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSE 495
E + VG+++ Q++A D D N + + ++ F ++P G + +PLD SE
Sbjct: 22 EDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSE 78
Query: 496 YMLLVKATDQ 505
+ + +D
Sbjct: 79 FTVEFSVSDH 88
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 333 PVGSEILKVAASDSDQESKV-LYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHH 391
P ++ KV SD + SK L Q P +FRI+ ++G++SV + LDRE ++ +
Sbjct: 16 PFPRDVGKVVDSDRPERSKFRLTGKGVDQEP--KGIFRINENTGSVSVTRTLDREVIAVY 73
Query: 392 LLTIMARDQGTPAKRNFARVSINVLDSNDHPP 423
L + D + + V+D ND+ P
Sbjct: 74 QLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 443 NIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKA 502
++ +VV +DR +T +F ++ G++ R LD +++ Y L V+
Sbjct: 20 DVGKVVDSDRPERSKFRLTGKGVDQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVET 79
Query: 503 TDQGAPPLAATVPVQIIVV-MADNDP 527
TD L VP+++IV+ DN P
Sbjct: 80 TDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%)
Query: 443 NIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKA 502
++ +VV +DR G +T + F ++ G++ R LD ++ Y L V+
Sbjct: 21 DVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVET 80
Query: 503 TDQGAPPLAATVPVQIIVV 521
TD L VP+++IV+
Sbjct: 81 TDASGKTLEGPVPLEVIVI 99
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 125 LIQASDPDGDT--LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD 180
++ + P+G L + VD DP TF I + G+V + R +D ET A Y L + +D
Sbjct: 25 VVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 333 PVGSEILKVAASDSDQESKV-LYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHH 391
P ++ KV SD + SK L Q P FRI+ ++G++SV + LDRE+++ +
Sbjct: 17 PFPRDVGKVVDSDRPEGSKFRLTGKGVDQDP--KGTFRINENTGSVSVTRTLDRETIATY 74
Query: 392 LLTIMARD 399
L + D
Sbjct: 75 QLYVETTD 82
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 329 SESVPVGSEILKVAASDSDQESKV-LYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRES 387
++ +P + +V SD SK+ LY Q P +F+I+ +SG +SV + LDRE+
Sbjct: 12 NQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEP--KGIFKINENSGEVSVTKALDREA 69
Query: 388 LSHHLLTIMARDQ 400
+ + L + D+
Sbjct: 70 IPSYQLQVETTDE 82
>pdb|3K6I|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1
Length = 99
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 333 PVGSEILKVAASDSDQESKVLYSIHHA-QSPLSAALFRIDFHSGALSVAQPLDRESLSHH 391
P + KV S+ + +K S Q P +FRI+ SG +SV +PLDRE+++++
Sbjct: 16 PFPRSVGKVIRSEGTEGAKFRLSGKGVDQDP--KGIFRINEISGDVSVTRPLDREAIANY 73
Query: 392 LLTIMARDQGTPAKRNFARVSINVLD 417
L + D R+ I+V+D
Sbjct: 74 ELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 136 LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD 180
L + VD DP F I G+V + R +D E A Y L + V+D
Sbjct: 37 LSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTD 81
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 408 FARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVV-----ATDRDHGENGVVTY 462
+ V I V D ND+ P F V E + VGT I ATD D G NG + Y
Sbjct: 110 YHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEY 169
Query: 463 SIASG----NIGNVFTMDPIL-GTIQTARPLDLSLMSEYMLLVKATDQG 506
I + F + +L G + + L+ + Y ++++A D+
Sbjct: 170 VIQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQANDRA 218
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 450 TDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQ 505
+D D G+ G + Y ++ G VFT+D G I + LD S+Y L +A D+
Sbjct: 27 SDMDRGD-GSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDR 81
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 360 QSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSN 419
+ P +F D +G L+V LDRE LLT A D + I VLD N
Sbjct: 57 EPPFGIFVFNKD--TGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDIN 114
Query: 420 DHPPEF 425
D+ P F
Sbjct: 115 DNEPVF 120
>pdb|3P0C|A Chain A, Nischarin Px-Domain
pdb|3P0C|B Chain B, Nischarin Px-Domain
Length = 130
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 161 ARRVDWETQAQYTLNI-SVSDGIHEWTGRHRPS 192
AR V E YT+ I V+DG HEWT +HR S
Sbjct: 25 ARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYS 57
>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases
Length = 299
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 166 WETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQV 214
+ T Q N ++ DG W H P I NLD E L EFH++V
Sbjct: 236 FSTLTQSDDNPNIIDGASAWFDIHAPHEI--TFNLDGEPLSGQEFHIEV 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,703,502
Number of Sequences: 62578
Number of extensions: 667436
Number of successful extensions: 1923
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1614
Number of HSP's gapped (non-prelim): 239
length of query: 582
length of database: 14,973,337
effective HSP length: 104
effective length of query: 478
effective length of database: 8,465,225
effective search space: 4046377550
effective search space used: 4046377550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)