RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7562
(582 letters)
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 227 bits (580), Expect = 3e-67
Identities = 109/586 (18%), Positives = 176/586 (30%), Gaps = 164/586 (27%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
F L A D + + I V+ D ND
Sbjct: 72 ARFHLRAHAVDINGNQVENPIDIVINVI---------------DM------ND------- 103
Query: 71 LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
N P V E G V + A D
Sbjct: 104 -----------------------------NRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 134
Query: 131 PDGDT-----LWYRIVDGDPNST----FSIGNDKGNVLLARRVDWETQAQYTLNISVSDG 181
D L YRI+ P++ F+I
Sbjct: 135 ADDPNALNGMLRYRILSQAPSTPSPNMFTI------------------------------ 164
Query: 182 IHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLGRPRLTS-DTLAKVIVEVTDTND 239
+ TG I TV LD E + + +Q TD+ A ++ VTD ND
Sbjct: 165 -NNETG-----DIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVND 218
Query: 240 CPPQFSQDVYNVSI-------LVPTFT-----------NVAVLQFSQDVYNV--SILVPT 279
PP+F+ + + +V T A + S +IL
Sbjct: 219 NPPEFTAMTFYGEVPENRVDVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDP 278
Query: 280 FTNVAVLQLNSG---ETN------------------CSHQWSSRIWLHVTVVDVNEHRPI 318
+N ++ + ETN H S + VTV+DVNE+ P
Sbjct: 279 NSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PY 337
Query: 319 LTQSLYETNISESVPVGSEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRIDFHSGA 376
+ E + G+ + + A D D + + Y+ + +ID +G
Sbjct: 338 FAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANW----LKIDPVNGQ 393
Query: 377 LSVAQPLDRESL----SHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKG 432
++ LDRES + + T +A D G P + I +LD ND+ P+ +
Sbjct: 394 ITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQ--EA 451
Query: 433 RVFETSAVGTNIVQVVATDRDHGENG---VVTYSIASGNIGNVFTMDPILGTI-QTARPL 488
ET N + + A D D N ++ I +T++ + G Q +
Sbjct: 452 ETCETP--EPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKI 509
Query: 489 DLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPPRFAKAE 534
Y + + TD G PP + +++ V D++
Sbjct: 510 KFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHH 555
Score = 224 bits (573), Expect = 4e-66
Identities = 106/542 (19%), Positives = 183/542 (33%), Gaps = 126/542 (23%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD---TLWYRI----VDGDPNSTFSIGNDKGNVLLARR 163
+ + EN F + D D +L Y + D P F I G + + +
Sbjct: 7 INLPENSRGPF-PQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 164 VDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLT 223
+D E A++ L D+ ++
Sbjct: 66 LDRELIARFHLR------------------------------------AHAVDINGNQVE 89
Query: 224 SDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNVAVLQ----------FSQDVY 271
+ +++ V D ND P+F V+N S+ T V + Y
Sbjct: 90 NPID--IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147
Query: 272 NVSILVPTFTNVAVLQLN--SGE----------------------TNCSHQWSSRIWLHV 307
+ P+ + + +N +G+ T+ + +
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTA 207
Query: 308 TVV----DVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE----SKVLYSIHHA 359
T V DVN++ P T + + E+ V + + +D DQ Y I
Sbjct: 208 TAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRI--- 263
Query: 360 QSPLSAALFRI----DFHSGALSVAQPLDRESLSHHLLTIMARDQG------TPAKRNFA 409
F I + + G ++V +P+D E+ +LT+ A +Q ++ A
Sbjct: 264 SGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTA 323
Query: 410 RVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNI 469
VS+ V+D N+ P FA + R E GT + + A D D + Y+ S
Sbjct: 324 TVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDP- 381
Query: 470 GNVFTMDPILGTIQTARPLD----LSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMAD- 524
N +DP+ G I T LD + Y A+D G PP++ T +QI ++ D
Sbjct: 382 ANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLL--DI 439
Query: 525 ND-PPRFAKAELAAELFENEPPGTVVRHIEAR--------STSSLVFEIIRGDSDDMFSI 575
ND P+ E AE E P ++ I A + + ++I
Sbjct: 440 NDNAPQVLPQE--AETCETPEPNSIN--ITALDYDIDPNAGPFAFDLPLSPVTIKRNWTI 495
Query: 576 NK 577
N+
Sbjct: 496 NR 497
Score = 75.1 bits (185), Expect = 2e-14
Identities = 33/265 (12%), Positives = 63/265 (23%), Gaps = 82/265 (30%)
Query: 101 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNS--TFSIGNDKGNV 158
P + + E G ++ + A DPD ++ +D N
Sbjct: 335 NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRY----------MQQNIRYTKLSDPANW 384
Query: 159 LLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRI----EFHVQV 214
L I G I T+ LD ES
Sbjct: 385 L---------------------KIDPVNG-----QITTIAVLDRESPNVKNNIYNATFLA 418
Query: 215 TDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFS------- 267
+D G P ++ + + + D ND PQ + +
Sbjct: 419 SDNGIPPMSGT--GTLQIYLLDINDNAPQVLPQEAETCETPEP----NSINITALDYDID 472
Query: 268 ----QDVYNVSILVPTFTNVAVLQLNSGE---TNCSHQW--------------------S 300
+++ + T + +G+ N ++ S
Sbjct: 473 PNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPPKS 532
Query: 301 SRIWLHVTVVDVNEHRPILTQSLYE 325
+ L V V + + +
Sbjct: 533 NISILRVKVCQCDSNGDCTDVHHHH 557
Score = 65.4 bits (160), Expect = 2e-11
Identities = 28/247 (11%), Positives = 57/247 (23%), Gaps = 94/247 (38%)
Query: 6 VFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAV 65
V ++ A+D+G P S T + I ++ D + N P + + E E
Sbjct: 405 PNVKNNIYNATFLASDNGIPPMSGTGTLQIYLL---DINDNAPQVLPQE--AETCETPEP 459
Query: 66 GFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 125
+ I A D D N
Sbjct: 460 NSIN--ITALDY------------------DIDPNAGPF--------------------- 478
Query: 126 IQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVL-LARRVDWETQAQYTLNISVSDGIHE 184
+ ++I G+ L ++ + Y +
Sbjct: 479 ---------AFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEV---------- 519
Query: 185 WTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQF 244
+ +TD G P ++ + + V+V +
Sbjct: 520 --------------------------PIIITDSGNPPKSNI--SILRVKVCQCDSNGDCT 551
Query: 245 SQDVYNV 251
++
Sbjct: 552 DVHHHHH 558
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 217 bits (555), Expect = 1e-63
Identities = 109/528 (20%), Positives = 163/528 (30%), Gaps = 123/528 (23%)
Query: 71 LIQASDPDG----DTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALI 126
A +G D + I V D++ N P V E G V +
Sbjct: 77 YSHAVSSNGEAVEDPMEIVITVT------DQNDNRPEFTQEVFEGSVAEGAVPGTSVMKV 130
Query: 127 QASDPDGDT------LWYRIVDGDPNST----FSIGNDKGNVLLARRVDWETQAQYTLNI 176
A+D D D + Y IV DP F++
Sbjct: 131 SATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV------------------------- 165
Query: 177 SVSDGIHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVT 235
+ TG I + LD ES P VQ DL L++ AK ++ V
Sbjct: 166 ------NRDTG-----VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT--AKAVITVK 212
Query: 236 DTNDCPPQFSQDVYNVSILVP-TFTNVAVLQFS------------QDVYNV--------S 274
D ND P F+ Y VP N + + VY V
Sbjct: 213 DINDNAPVFNPSTYQGQ--VPENEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFV 270
Query: 275 ILVPTFTNVAVLQLNSG---ETNCSHQ---------------WSSRIWLHVTVVDVNEHR 316
++ TN +L+ G E + S + V VVDVNE
Sbjct: 271 VVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-A 329
Query: 317 PILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRIDFHS 374
PI + + E VG EI A + D + K+ Y I +A I+ +
Sbjct: 330 PIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRD----TANWLEINPET 385
Query: 375 GALSVAQPLDRESLSH-----HLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSL 429
GA+ +DRE H ++ I+A D G+P + + +LD ND+ P
Sbjct: 386 GAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRN 445
Query: 430 VKGRVFETSAVGTNIVQVVATDRDHGENG-VVTYSIASGNIGN-VFTMDPILGTIQTARP 487
++ + + I D D N T + G N + +P
Sbjct: 446 MQ--FCQRNPQPHII---TILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQP 500
Query: 488 LDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADND-PPRFAKAE 534
+ EY + +K D T+ V + KA
Sbjct: 501 RKDLEIGEYKIHLKLADNQNKDQVTTLDVHVCDC---EGTVNNCMKAH 545
Score = 206 bits (527), Expect = 1e-59
Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 23/292 (7%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHA 359
+ +TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 360 QSPLSAA-LFRIDFHSGALSVAQ-PLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Query: 418 SNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENG--VVTYSIASGNIGNVF-T 474
ND+ P F S +G+V E + V I + TD D Y++ +
Sbjct: 214 INDNAPVFNPSTYQGQVPE-NEVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVV 272
Query: 475 MDPI--LGTIQTARPLDLSLMSEYMLLVKATDQG---APPLAATVPVQIIVVMAD-NDPP 528
DP G ++TA+ LD +Y+L V+ ++ + +T V + V D N+ P
Sbjct: 273 TDPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDV--VDVNEAP 330
Query: 529 RFAKAELAAELFENEPPGTVVRHIEAR----STSSLVFEIIRGDSDDMFSIN 576
F AE E+ E+ G + AR + I D+ + IN
Sbjct: 331 IFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEIN 382
Score = 184 bits (468), Expect = 2e-51
Identities = 74/269 (27%), Positives = 118/269 (43%), Gaps = 25/269 (9%)
Query: 327 NISESVPVGSEILKVAASDSD--QESKVLYSIH--HAQSPLSAALFRIDFHSGALSVAQP 382
+ E+ G + S+ +E+KV YSI A P +F I+ +G L V QP
Sbjct: 8 SCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKP-PVGVFIIERETGWLKVTQP 65
Query: 383 LDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGT 442
LDRE+++ ++L A A + + I V D ND+ PEF + +G V E + GT
Sbjct: 66 LDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 443 NIVQVVATDRD---HGENGVVTYSIASGN----IGNVFTMDPILGTIQTA-RPLDLSLMS 494
++++V ATD D + N + Y+I S + N+FT++ G I LD
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP 185
Query: 495 EYMLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFENEPPGTVVRHI 552
Y L+V+A D L+ T I V D ND P F + ++ ENE + +
Sbjct: 186 TYTLVVQAADLQGEGLSTTAKAVITVK--DINDNAPVFNPSTYQGQVPENE-VNARIATL 242
Query: 553 EAR------STSSLVFEIIRGDSDDMFSI 575
+ + + + D D F +
Sbjct: 243 KVTDDDAPNTPAWKAVYTVVNDPDQQFVV 271
Score = 77.8 bits (192), Expect = 3e-15
Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 96/248 (38%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
+ L+V+A D S+TA+ I V D + N P + +V EN V +A
Sbjct: 185 PTYTLVVQAADLQGEGLSTTAKAVITVK---DINDNAPVFNPSTYQGQVPEN-EVNARIA 240
Query: 71 LIQASDPD-GDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQAS 129
++ +D D +T ++
Sbjct: 241 TLKVTDDDAPNTPAWKAV------------------------------------------ 258
Query: 130 DPDGDTLWYRIVDGDPNSTFSIGNDK----GNVLLARRVDWETQAQYTLNISVSDGIHEW 185
Y +V DP+ F + D G + A+ +D+E + QY L++ V +
Sbjct: 259 --------YTVV-NDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILHVRVENE---- 305
Query: 186 TGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFS 245
+ S A V V+V D N+ P F
Sbjct: 306 -----------------------------EPFEGSLVPST--ATVTVDVVDVNE-APIFM 333
Query: 246 QDVYNVSI 253
V +
Sbjct: 334 PAERRVEV 341
Score = 71.6 bits (176), Expect = 3e-13
Identities = 26/150 (17%), Positives = 47/150 (31%), Gaps = 46/150 (30%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD---TLWYRI----VDGDPNSTFSIGNDKGNVLLARR 163
+ EN+ F + + D ++Y I D P F I + G + + +
Sbjct: 7 ISCPENEKGEF-PKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 164 VDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLT 223
+D E A+Y L +
Sbjct: 66 LDREAIAKYILY------------------------------------SHAVSSNGEAVE 89
Query: 224 SDTLAKVIVEVTDTNDCPPQFSQDVYNVSI 253
+++ VTD ND P+F+Q+V+ S+
Sbjct: 90 DPME--IVITVTDQNDNRPEFTQEVFEGSV 117
Score = 68.9 bits (169), Expect = 2e-12
Identities = 39/256 (15%), Positives = 65/256 (25%), Gaps = 70/256 (27%)
Query: 101 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNS--TFSIGNDKGNV 158
P ++RVEV E+ VG + A +P D + T+ I D N
Sbjct: 329 APIFMPAERRVEVPEDFGVGQEITSYTAREP----------DTFMDQKITYRIWRDTANW 378
Query: 159 LLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRI-----EFHVQ 213
L I+ TG AI T +D E + +
Sbjct: 379 L---------------------EINPETG-----AIFTRAEMDREDAEHVKNSTYVALII 412
Query: 214 VTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAV---------- 263
TD G P T +++ + D ND P P + +
Sbjct: 413 ATDDGSPIATGT--GTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHIITILDPDLPPNTS 470
Query: 264 -LQFS-----QDVYNVSILVPTFTNVAVLQLNSGETNC---------SHQWSSRIWLHVT 308
+ + ++ + E + L V
Sbjct: 471 PFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVH 530
Query: 309 VVDVNEHRPILTQSLY 324
V D ++ +
Sbjct: 531 VCDCEGTVNNCMKAHH 546
Score = 66.6 bits (163), Expect = 1e-11
Identities = 27/246 (10%), Positives = 55/246 (22%), Gaps = 99/246 (40%)
Query: 5 IVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDA 64
V + L+ ATD GSP + T + + ++ D + N P + + ++ + +
Sbjct: 399 AEHVKNSTYVALIIATDDGSPIATGTGTLLLVLL---DVNDNAPIPEPRN--MQFCQRNP 453
Query: 65 VGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 124
+I DPD
Sbjct: 454 QP---HIITILDPD---------------------------------------------- 464
Query: 125 LIQASDPDGDTLWYRIVDGDP-NSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIH 183
P+ + G N T + L+ + +Y +
Sbjct: 465 ----LPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKDLEIGEYKI--------- 511
Query: 184 EWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQ 243
H+++ D + V V D
Sbjct: 512 ---------------------------HLKLADNQNKDQV----TTLDVHVCDCEGTVNN 540
Query: 244 FSQDVY 249
+ +
Sbjct: 541 CMKAHH 546
Score = 50.0 bits (120), Expect = 1e-06
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
++ L A + I V D++ N P V E G V
Sbjct: 72 AKYILYSHAVSSNGEAVEDPMEIVITVT---DQNDNRPEFTQEVFEGSVAEGAVPGTSVM 128
Query: 71 LIQASDPD 78
+ A+D D
Sbjct: 129 KVSATDAD 136
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 222 bits (568), Expect = 3e-63
Identities = 97/535 (18%), Positives = 173/535 (32%), Gaps = 88/535 (16%)
Query: 100 NPPTIKSPDQRVEVTE-NDAVGFLVALIQASDPD-GDTLWYRIVDGDPNSTFSIGNDKGN 157
P S + V G + + SD Y + D F + D G
Sbjct: 33 CKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSR----FRVLPD-GT 87
Query: 158 VLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDL 217
VL+ R V ++T++ + GI T V
Sbjct: 88 VLVKRHVKLHKDTKFTISTWDARGIKHST----------------------NIAVASKRH 125
Query: 218 GRPRLTSDTLAKVIVEVTDTNDCPPQFSQ-----DVYNVSILVPTFTNVAVLQFSQDV-- 270
+K+ V + + VS ++Q +
Sbjct: 126 RSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDR 185
Query: 271 -----YNVSILVPTFTNVAVLQLN--SGETNCSH----------------------QWSS 301
Y+++ V ++ +G +
Sbjct: 186 FNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEE 245
Query: 302 RIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSI 356
+ + + V+D N++RP TQ ++ ++ E V G++++ V+A+D D + YSI
Sbjct: 246 PMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI 305
Query: 357 HHAQSPLSAA-LFRIDFHSGALSVA-QPLDRESLSHHLLTIMARDQGTPAKRNFARVSIN 414
LF I+ +G +S+ LDRE + LT+ A D + I
Sbjct: 306 LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQ 365
Query: 415 VLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD-HGENGVVTYSIASGNIGNVF 473
+ D+ND+ P F V E + +G + ++ TD D G N G F
Sbjct: 366 ITDANDNAPIFDPKTYTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFF 424
Query: 474 TMDPIL----GTIQTARPLDLSLMSEYMLLVKATDQ---GAPPLAATVPVQIIVVMAD-N 525
+ G + TA+ LD L +Y+L + + P +T V + V D N
Sbjct: 425 NITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTV--EDVN 482
Query: 526 DPPRFAKAELAAELFENEPPGTVVRHIEAR----STSSLVFEIIRGDSDDMFSIN 576
+ P F A ++ E+ G + + A+ + I D ++N
Sbjct: 483 EAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVN 537
Score = 220 bits (562), Expect = 2e-62
Identities = 103/511 (20%), Positives = 164/511 (32%), Gaps = 117/511 (22%)
Query: 72 IQASDPDG----DTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQ 127
A +G + + I V+ D++ N P R V E G V +
Sbjct: 233 SHAVSENGSPVEEPMEITINVI------DQNDNRPKFTQDVFRGSVREGVQPGTQVMAVS 286
Query: 128 ASDPDGDT------LWYRIVDGDPNS----TFSIGNDKGNVLLARRVDWETQAQYTLNIS 177
A+D D + L Y I+ DP F+I
Sbjct: 287 ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTI-------------------------- 320
Query: 178 VSDGIHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTD 236
+ TG I + LD E P VQ TDL L+ + K I+++TD
Sbjct: 321 -----NRETG-----VISLIGTGLDREKFPEYTLTVQATDLEGAGLSVE--GKAIIQITD 368
Query: 237 TNDCPPQFSQDVYNVSILVP-TFTNVAVLQFS------------QDVYNVS--------I 275
ND P F Y VP V + S Q VY + I
Sbjct: 369 ANDNAPIFDPKTYTAL--VPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNI 426
Query: 276 LVPTFTNVAVLQLNSG---ETNCSHQ---------------WSSRIWLHVTVVDVNEHRP 317
+N +L G E + +S + VTV DVNE P
Sbjct: 427 TTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-AP 485
Query: 318 ILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRIDFHSG 375
++ ++SE + G +I+ + A D D Q K+ Y I + + ++ +G
Sbjct: 486 FFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR----WLTVNKDNG 541
Query: 376 ALSVAQPLDRES----LSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVK 431
++ LDRES + + + ++ D G + ++VLD ND+ P + +
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601
Query: 432 GRVFETSAVGTNIVQVVATDRDHGENGV-VTYSIASGNIGNVFTMDPILGTIQTARPLDL 490
+ +D D N S++ G+ GT P
Sbjct: 602 MCDQNPEPQV-----LTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQ 656
Query: 491 SLMSEYMLLVKATDQGAPPLAATVPVQIIVV 521
+Y + V +D P V +
Sbjct: 657 LKKGDYSIYVLLSDAQNNPQLTVVNATVCSC 687
Score = 214 bits (547), Expect = 2e-60
Identities = 104/607 (17%), Positives = 192/607 (31%), Gaps = 126/607 (20%)
Query: 17 VRATDHGSPN----QSSTARVSI-------QVVRLPDESKNPPTIKSPDQRVEVTENDAV 65
V +D + +R + + TI + D R +
Sbjct: 60 VNFSDCTTRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIA 119
Query: 66 GFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIK----SPDQRVEVTENDAVGF 121
+ + S + + ++ VL P+ K P +V E
Sbjct: 120 --VASKRHRSGEEAHSRSSKLPVLT---FPETHTGLKRKKRDWVIPPIKVSENERGPFPK 174
Query: 122 LVALIQASDPDGDTLWYRI----VDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNIS 177
+ I+++ + ++Y I D P F I + G +L+ R +D E +Y L+
Sbjct: 175 RLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLS-- 232
Query: 178 VSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDT 237
+ + + V D
Sbjct: 233 ----------------------------------SHAVSENGSPVEEPME--ITINVIDQ 256
Query: 238 NDCPPQFSQDVYNVSIL--VPTFTNVAVLQ-----------FSQDVYNVSILVPTFTNVA 284
ND P+F+QDV+ S+ V T V + Y++ P
Sbjct: 257 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 316
Query: 285 VLQLN--SGETNCSHQW-----SSRIWLHVTVVD------------------VNEHRPIL 319
+ +N +G + L V D N++ PI
Sbjct: 317 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIF 376
Query: 320 TQSLYETNISESVPVGSEILKVAASDSDQE----SKVLYSIHHAQSPLSAALFRI----D 371
Y + E+ +G E+ +++ +D D + +Y I F I +
Sbjct: 377 DPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKI----RVNEGGFFNITTDPE 431
Query: 372 FHSGALSVAQPLDRESLSHHLLTIMARDQ---GTPAKRNFARVSINVLDSNDHPPEFATS 428
+ G L+ A+ LD E ++L I + P + A V++ V D N+ P F +
Sbjct: 432 SNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPA 490
Query: 429 LVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPL 488
+ + V E + G I+ +VA D D + ++Y I + + T++ G + L
Sbjct: 491 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN-DPARWLTVNKDNGIVTGNGNL 549
Query: 489 D----LSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFEN 542
D + Y +++ TD G T + + V+ D ND P +
Sbjct: 550 DRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL--DVNDNGPVPSPRVFTMCDQNP 607
Query: 543 EPPGTVV 549
EP +
Sbjct: 608 EPQVLTI 614
Score = 210 bits (535), Expect = 7e-59
Identities = 97/429 (22%), Positives = 158/429 (36%), Gaps = 76/429 (17%)
Query: 214 VTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL---VPTFTNVAVLQF---- 266
+ L + V D + C P FS Y S+ + + + F
Sbjct: 9 ASVWLCGLLCLLQV--VPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT 66
Query: 267 --SQDVYNVSIL---------------------------------VPTFTNVAVLQLNSG 291
+Y+V + TN+AV
Sbjct: 67 TRKHGLYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHR 126
Query: 292 ETNCSHQWSSRIWLHVTVVDVNEHRPILTQS-------LYETNISESVPVGSEILKVAAS 344
+H SS+ + V+ E L + + + +E P ++++ S
Sbjct: 127 SGEEAHSRSSK----LPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIK-S 181
Query: 345 DSDQESKVLYSIH-HAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTP 403
+ D+ +KV YSI +FRI++ +G + V +PLDRE ++L+ A +
Sbjct: 182 NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGS 241
Query: 404 AKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD---HGENGVV 460
++INV+D ND+ P+F + +G V E GT ++ V ATD D NGV+
Sbjct: 242 PVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 301
Query: 461 TYSIASGNI----GNVFTMDPILGTIQTAR-PLDLSLMSEYMLLVKATDQGAPPLAATVP 515
+YSI + N+FT++ G I LD EY L V+ATD L+
Sbjct: 302 SYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGK 361
Query: 516 VQIIVVMAD-ND-PPRFAKAELAAELFENEPPGTVVRHIEAR------STSSLVFEIIRG 567
I + D ND P F A + EN G V+ + + + IR
Sbjct: 362 AIIQIT--DANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV 418
Query: 568 DSDDMFSIN 576
+ F+I
Sbjct: 419 NEGGFFNIT 427
Score = 148 bits (374), Expect = 1e-37
Identities = 56/335 (16%), Positives = 111/335 (33%), Gaps = 53/335 (15%)
Query: 283 VAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISE-SVPVGSEILKV 341
+ +L + + DV+ +P + + Y +++ + G ++ KV
Sbjct: 1 MGSTRLRNASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKV 60
Query: 342 AASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARD-- 399
SD LY + + FR+ G + V + + + ++
Sbjct: 61 NFSDCTTRKHGLYDV-------GDSRFRVL-PDGTVLVKRHVKLHKDTKFTISTWDARGI 112
Query: 400 ------------QGTPAKRNFARVSINVLDSNDHPP-------EFATSLVKGRVFETSAV 440
+ + + + VL + ++ +K E
Sbjct: 113 KHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPF 172
Query: 441 GTNIVQVVATDRDHGENGVVTYSIASGNIG----NVFTMDPILGTIQTARPLDLSLMSEY 496
+VQ+ + V YSI VF ++ G + RPLD +Y
Sbjct: 173 PKRLVQI---KSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKY 229
Query: 497 MLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFENEPPGTVVRHIEA 554
+L A + P+ + + I V+ D ND P+F + + E PGT V + A
Sbjct: 230 VLSSHAVSENGSPVEEPMEITINVI--DQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSA 287
Query: 555 R--------STSSLVFEIIRGD----SDDMFSINK 577
L + I++ D ++F+IN+
Sbjct: 288 TDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINR 322
Score = 81.5 bits (201), Expect = 3e-16
Identities = 45/247 (18%), Positives = 65/247 (26%), Gaps = 94/247 (38%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
E+ L V+ATD S + IQ+ D + N P V EN +GF V
Sbjct: 340 PEYTLTVQATDLEGAGLSVEGKAIIQIT---DANDNAPIFDPKTYTALVPEN-EIGFEVQ 395
Query: 71 LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
+ +D D
Sbjct: 396 RLSVTDLD--------------------------------------------------MP 405
Query: 131 PDGDTLWYRIVDGDPNSTFSIGNDK----GNVLLARRVDWETQAQYTLNISVSDGIHEWT 186
+ + F+I D G + A+ +D+E + QY L I+V +
Sbjct: 406 GTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA----- 460
Query: 187 GRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQ 246
P TS A V V V D N+ P F
Sbjct: 461 ----------------------------EPFSVPLPTST--ATVTVTVEDVNE-APFFVP 489
Query: 247 DVYNVSI 253
V V +
Sbjct: 490 AVSRVDV 496
Score = 66.4 bits (162), Expect = 1e-11
Identities = 40/293 (13%), Positives = 74/293 (25%), Gaps = 29/293 (9%)
Query: 300 SSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQES---KVLYSI 356
+ L + V+DVN++ P+ + ++ P + SD+D S+
Sbjct: 576 TGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSL 630
Query: 357 HHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVL 416
H G + P + + + ++ D + V+ V
Sbjct: 631 SHGSDL---TWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVC 685
Query: 417 DSNDHPPEFATSLVKGRVFET------SAVGTNIVQVVATDRDHGENGVV--TYSIASGN 468
+ LV G S + I+ ++ + V
Sbjct: 686 SCEGKAIKCQEKLVGGFDLPIILVILGSVLALLILFLLLLLFLKRKKVVKEPLLLPEDDT 745
Query: 469 IGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPP 528
N+F G + L P P ++
Sbjct: 746 RDNIFYYGEEGGGEEDQDYDLSQLHRGLDSRPDIMRNDVVPTLMPAPHYRPRPSNPDEIG 805
Query: 529 RFAKAELAAELFENEPPGTVVRHI--------EARSTSSLVFEIIRGDSDDMF 573
F L A + P + EA S SSL + D +
Sbjct: 806 NFIDENLDAADNDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSNSNDEHDYNY 858
Score = 59.1 bits (143), Expect = 3e-09
Identities = 20/176 (11%), Positives = 44/176 (25%), Gaps = 58/176 (32%)
Query: 6 VFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAV 65
+V + +++ TD G + T + + V+ D + N P +
Sbjct: 554 EYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL---DVNDNGPVPSPRVFTMCDQNP--- 607
Query: 66 GFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 125
++ SD D
Sbjct: 608 --EPQVLTISDAD----------------------------------------------- 618
Query: 126 IQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDG 181
P+ + G + + + KG +L + Y++ + +SD
Sbjct: 619 ---IPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 671
Score = 31.8 bits (72), Expect = 0.74
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVV 38
++ + V +D + Q + ++
Sbjct: 660 GDYSIYVLLSDAQNNPQLTVVNATVCSC 687
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 215 bits (550), Expect = 6e-63
Identities = 103/510 (20%), Positives = 164/510 (32%), Gaps = 117/510 (22%)
Query: 71 LIQASDPDG----DTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALI 126
A +G + + I V+ D++ N P R V E G V +
Sbjct: 83 SSHAVSENGSPVEEPMEITINVI------DQNDNRPKFTQDVFRGSVREGVQPGTQVMAV 136
Query: 127 QASDPDGDT------LWYRIVDGDPNST----FSIGNDKGNVLLARRVDWETQAQYTLNI 176
A+D D + L Y I+ DP F+I
Sbjct: 137 SATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTI------------------------- 171
Query: 177 SVSDGIHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVT 235
+ TG I + LD E P VQ TDL L+ + K I+++T
Sbjct: 172 ------NRETG-----VISLIGTGLDREKFPEYTLTVQATDLEGAGLSVE--GKAIIQIT 218
Query: 236 DTNDCPPQFSQDVYNVSILVP-TFTNVAVLQFS------------QDVYNVS-------- 274
D ND P F Y VP V + S Q VY +
Sbjct: 219 DANDNAPIFDPKTYTAL--VPENEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFN 276
Query: 275 ILVPTFTNVAVLQLNSG---ETNCSHQ---------------WSSRIWLHVTVVDVNEHR 316
I +N +L G E + +S + VTV DVNE
Sbjct: 277 ITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-A 335
Query: 317 PILTQSLYETNISESVPVGSEILKVAASDSD--QESKVLYSIHHAQSPLSAALFRIDFHS 374
P ++ ++SE + G +I+ + A D D Q K+ Y I + + ++ +
Sbjct: 336 PFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR----WLTVNKDN 391
Query: 375 GALSVAQPLDRES----LSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLV 430
G ++ LDRES + + + ++ D G + ++VLD ND+ P + +
Sbjct: 392 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 451
Query: 431 KGRVFETSAVGTNIVQVVATDRDHGENGVV-TYSIASGNIGNVFTMDPILGTIQTARPLD 489
+ +D D N S++ G+ GT P
Sbjct: 452 TMCDQNPEP-----QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQ 506
Query: 490 LSLMSEYMLLVKATDQGAPPLAATVPVQII 519
+Y + V +D P V +
Sbjct: 507 QLKKGDYSIYVLLSDAQNNPQLTVVNATVC 536
Score = 207 bits (529), Expect = 5e-60
Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 23/299 (7%)
Query: 298 QWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKV 352
+ + + V+D N++RP TQ ++ ++ E V G++++ V+A+D D +
Sbjct: 93 PVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVL 152
Query: 353 LYSIHHAQSPLSAA-LFRIDFHSGALSVA-QPLDRESLSHHLLTIMARDQGTPAKRNFAR 410
YSI LF I+ +G +S+ LDRE + LT+ A D +
Sbjct: 153 SYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGK 212
Query: 411 VSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD-HGENGVVTYSIASGNI 469
I + D+ND+ P F V E + +G + ++ TD D G N
Sbjct: 213 AIIQITDANDNAPIFDPKTYTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNE 271
Query: 470 GNVFTMDPIL----GTIQTARPLDLSLMSEYMLLVKATDQ---GAPPLAATVPVQIIVVM 522
G F + G + TA+ LD L +Y+L + + P +T V + V
Sbjct: 272 GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTV-- 329
Query: 523 AD-NDPPRFAKAELAAELFENEPPGTVVRHIEAR----STSSLVFEIIRGDSDDMFSIN 576
D N+ P F A ++ E+ G + + A+ + I D ++N
Sbjct: 330 EDVNEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVN 388
Score = 192 bits (491), Expect = 1e-54
Identities = 76/282 (26%), Positives = 122/282 (43%), Gaps = 21/282 (7%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHA-QSPLSAALFRID 371
+ H + + +E P ++++ S+ D+ +KV YSI +FRI+
Sbjct: 2 HHHHHDWVIPPIKVSENERGPFPKRLVQIK-SNKDRFNKVYYSITGQGADNPPQGVFRIE 60
Query: 372 FHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVK 431
+ +G + V +PLDRE ++L+ A + ++INV+D ND+ P+F + +
Sbjct: 61 WETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFR 120
Query: 432 GRVFETSAVGTNIVQVVATDRD---HGENGVVTYSIASGNI----GNVFTMDPILGTIQT 484
G V E GT ++ V ATD D NGV++YSI + N+FT++ G I
Sbjct: 121 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISL 180
Query: 485 AR-PLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFE 541
LD EY L V+ATD L+ I + D ND P F A + E
Sbjct: 181 IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT--DANDNAPIFDPKTYTALVPE 238
Query: 542 NEPPGTVVRHIEAR------STSSLVFEIIRGDSDDMFSINK 577
N G V+ + + + IR + F+I
Sbjct: 239 N-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 279
Score = 80.0 bits (198), Expect = 5e-16
Identities = 45/247 (18%), Positives = 65/247 (26%), Gaps = 94/247 (38%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
E+ L V+ATD S + IQ+ D + N P V EN +GF V
Sbjct: 191 PEYTLTVQATDLEGAGLSVEGKAIIQIT---DANDNAPIFDPKTYTALVPEN-EIGFEVQ 246
Query: 71 LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
+ +D D
Sbjct: 247 RLSVTDLD--------------------------------------------------MP 256
Query: 131 PDGDTLWYRIVDGDPNSTFSIGNDK----GNVLLARRVDWETQAQYTLNISVSDGIHEWT 186
+ + F+I D G + A+ +D+E + QY L I+V +
Sbjct: 257 GTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENA----- 311
Query: 187 GRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQ 246
P TS A V V V D N+ P F
Sbjct: 312 ----------------------------EPFSVPLPTST--ATVTVTVEDVNE-APFFVP 340
Query: 247 DVYNVSI 253
V V +
Sbjct: 341 AVSRVDV 347
Score = 70.4 bits (173), Expect = 6e-13
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 42/157 (26%)
Query: 102 PTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRI----VDGDPNSTFSIGNDKGN 157
P +V E + I+++ + ++Y I D P F I + G
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGW 65
Query: 158 VLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDL 217
+L+ R +D E +Y L+
Sbjct: 66 MLVTRPLDREEYDKYVLS------------------------------------SHAVSE 89
Query: 218 GRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL 254
+ ++ + V D ND P+F+QDV+ S+
Sbjct: 90 NGSPVEEP--MEITINVIDQNDNRPKFTQDVFRGSVR 124
Score = 60.4 bits (147), Expect = 8e-10
Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 58/176 (32%)
Query: 6 VFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAV 65
+V + +++ TD G + T + + V+ D + N P + +
Sbjct: 405 EYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVL---DVNDNGPVPSPRVFTMCDQNPE-- 459
Query: 66 GFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 125
++ SD D
Sbjct: 460 ---PQVLTISDAD----------------------------------------------- 469
Query: 126 IQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDG 181
P+ + G + + + KG +L + Y++ + +SD
Sbjct: 470 ---IPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 522
Score = 30.7 bits (70), Expect = 1.3
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSI 35
++ + V +D + Q + ++
Sbjct: 511 GDYSIYVLLSDAQNNPQLTVVNATV 535
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 209 bits (535), Expect = 4e-62
Identities = 96/460 (20%), Positives = 155/460 (33%), Gaps = 95/460 (20%)
Query: 112 EVTENDAVGFLVALIQASDPDGDT---LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWET 168
VT I+ ++ DGDT +++ TF I +D
Sbjct: 3 RVTRAVRPT---KRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP------------ 47
Query: 169 QAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPR---IEFHVQVT---DLGRPRL 222
E G A+R D+E L I+F V +T +
Sbjct: 48 -----------WVTVETNG-----AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKY 91
Query: 223 TSDTLAKVIVEVTDTNDCPPQFSQDV--YNVSIL--VPTFTNVAVLQ-FSQDV-YNVSIL 276
T +VI+ V D ND PP F + P T V LQ D +N+
Sbjct: 92 TD--NQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHY- 148
Query: 277 VPTFTNVAVLQL-----NSG----------ETNCSHQ------------WSSRIWLHVTV 309
SG + + + R
Sbjct: 149 --FIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEE 206
Query: 310 ---VDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAA 366
+ + P YE I E+ S+I+ + A + ++ Y++ A
Sbjct: 207 RLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA-DREIRYTLKA--QGQGAG 263
Query: 367 LFRIDFHSGALSVAQPLDRESLSH---HLLTIMARDQGTPAKRNFARVSINVLDSNDHPP 423
F I SG + +A+ LD E L + L + A + + ++I V D ND+ P
Sbjct: 264 TFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE-DSGGFSTSVDLTIRVTDVNDNAP 322
Query: 424 EFA-TSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTI 482
+F V E +GT+I++V A D D G N + Y ++ + F +D G I
Sbjct: 323 KFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH----FAVDSN-GII 377
Query: 483 QTARPLDL-SLMSEYMLLVKATDQGAPPLAATVPVQIIVV 521
+ LD + + Y +V A D+G PP + V++
Sbjct: 378 VNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTK 417
Score = 195 bits (498), Expect = 9e-57
Identities = 53/264 (20%), Positives = 102/264 (38%), Gaps = 23/264 (8%)
Query: 305 LHVTVVDVNEHRPILTQS--LYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSP 362
+ + V DVN+ P + + + P + + + A D D + + Y I
Sbjct: 97 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFI---VRD 153
Query: 363 LSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRN----FARVSINVLDS 418
+ F +D SG + + ++L + A DQ ++++
Sbjct: 154 RTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG- 212
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSI-ASGNIGNVFTMDP 477
P+F + + E ++I+ + A + + Y++ A G F + P
Sbjct: 213 GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGP 269
Query: 478 ILGTIQTARPLD---LSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRFAK 532
G ++ A+ LD L Y L+V AT+ + +V + I V D ND P+F
Sbjct: 270 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRV--TDVNDNAPKFEL 326
Query: 533 AE-LAAELFENEPPGTVVRHIEAR 555
+ A + E+ P GT + ++A
Sbjct: 327 PDYQAHNVDEDIPLGTSILRVKAM 350
Score = 183 bits (466), Expect = 4e-52
Identities = 56/274 (20%), Positives = 100/274 (36%), Gaps = 30/274 (10%)
Query: 327 NISESVPVGSEILKVAASDSD--QESKVLYSIHHAQ-----SPLSAALFRIDFHSGALSV 379
++ +V ++ +++D E K ++ + + +GA+ V
Sbjct: 3 RVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Query: 380 AQPLDRESLS------HHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATS--LVK 431
+ D E L ++ + RV I V D ND PP F ++
Sbjct: 60 KKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQ 119
Query: 432 GRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLS 491
V + T + + A D D N + Y I G F +D G ++T
Sbjct: 120 AVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQ 177
Query: 492 LMSEYMLLVKATDQGAPP----LAATVPVQIIVVMADND-PPRFAKAELAAELFENEPPG 546
L EY+L VKA DQ +T ++ +V P+F AE+ EN+
Sbjct: 178 LDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV--GGKRAPQFYMPSYEAEIPENQKKD 235
Query: 547 TVVRHIEARS--TSSLVFEII-RGDSDDMFSINK 577
+ + I+A+S + + + +G F+I
Sbjct: 236 SDIISIKAKSFADREIRYTLKAQGQGAGTFNIGP 269
Score = 142 bits (361), Expect = 2e-37
Identities = 65/359 (18%), Positives = 116/359 (32%), Gaps = 88/359 (24%)
Query: 100 NPPTIKSPDQ--RVEVTENDAVGFLVALIQASDPD-GDTLWYRIVDGDPNSTFSIGNDKG 156
PP + + V N V +QA DPD + Y IV F + G
Sbjct: 107 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSG 166
Query: 157 NVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTD 216
V ++ +Y L + D + + Q T
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQ----------------------NGKVDDRRFQST- 203
Query: 217 LGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNVAVLQ-----FSQD 269
+ + + PQF Y I +++ ++ +
Sbjct: 204 -----------PEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFADREI 251
Query: 270 VYNVSILVP---TFTNVAVLQLNSG----------ETNCSHQW--------------SSR 302
Y + TF + SG E S+
Sbjct: 252 RYTLKAQGQGAGTFN----IGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS 307
Query: 303 IWLHVTVVDVNEHRPILTQSLYET-NISESVPVGSEILKVAASDSDQE--SKVLYSIHHA 359
+ L + V DVN++ P Y+ N+ E +P+G+ IL+V A DSD +++ Y +
Sbjct: 308 VDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLV--- 364
Query: 360 QSPLSAALFRIDFHSGALSVAQPLDRESL-SHHLLTIMARDQGTPAKRNFARVSINVLD 417
S F +D +G + + LD ++ +++ + A+D+G P K A V + +
Sbjct: 365 ----SDDHFAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 80.8 bits (200), Expect = 2e-16
Identities = 35/245 (14%), Positives = 61/245 (24%), Gaps = 97/245 (39%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
E+ L V+A D + + + + +
Sbjct: 180 MEYVLYVKAEDQNGKVDDRRFQSTPEER------------------LSIVGGK------- 214
Query: 71 LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
P P E+ EN + I+A
Sbjct: 215 -----------------------------RAPQFYMPSYEAEIPENQKKDSDIISIKAKS 245
Query: 131 PDGDTLWYRIV-DGDPNSTFSIGNDKGNVLLARRVDWETQAQ---YTLNISVSDGIHEWT 186
+ Y + G TF+IG G V LA+ +D+E Q Y+L ++ ++
Sbjct: 246 FADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE------ 299
Query: 187 GRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFSQ 246
++ + + VTD ND P+F
Sbjct: 300 -------------------------------DSGGFSTSVD--LTIRVTDVNDNAPKFEL 326
Query: 247 DVYNV 251
Y
Sbjct: 327 PDYQA 331
Score = 47.7 bits (114), Expect = 6e-06
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 13 FDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPT-IKSPDQRVEVTENDAVGFLVAL 71
+ L+V AT+ S S++ ++I+V D + N P Q V E+ +G +
Sbjct: 291 YSLIVTATE-DSGGFSTSVDLTIRVT---DVNDNAPKFELPDYQAHNVDEDIPLGTSILR 346
Query: 72 IQASDPD 78
++A D D
Sbjct: 347 VKAMDSD 353
Score = 35.4 bits (82), Expect = 0.050
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 13 FDLLVRATDHGSPNQSSTARVSIQVV 38
++ +V A D G P +S A V +
Sbjct: 392 YEFIVTAKDKGEPPKSGVATVRVYTK 417
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 192 bits (491), Expect = 3e-58
Identities = 66/218 (30%), Positives = 97/218 (44%), Gaps = 13/218 (5%)
Query: 313 NEHRPILTQSLYET--NISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRI 370
P T ++T ISE PVGS + ++ A D D +++ + ++ F +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD-NDPLVFGV---SGEEASRFFAV 57
Query: 371 DFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLV 430
+ +G + + QPLDRE+ S + D +V+I V D ND+ P F
Sbjct: 58 EPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVIT---RKVNIQVGDVNDNAPTFHNQPY 114
Query: 431 KGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDL 490
R+ E + VGT I V ATD D G G V YS + F +D G + + LD
Sbjct: 115 SVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS--PFFAIDSARGIVTVIQELDY 172
Query: 491 SLMSEYMLLVKATDQGAP-PLAATVPVQIIVV-MADND 526
+ Y L V ATDQ PL+ + II+ M D D
Sbjct: 173 EVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210
Score = 115 bits (291), Expect = 8e-30
Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 419 NDHPPEFATSLVKGRVF--ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMD 476
+ P F + E + VG+++ Q++A D D N + + ++ F ++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 477 PILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADND-PPRFAKAEL 535
P G + +PLD SE+ + +D V +Q+ V ND P F
Sbjct: 59 PDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITR-KVNIQVGDV---NDNAPTFHNQPY 114
Query: 536 AAELFENEPPGTVVRHIEAR 555
+ + EN P GT + + A
Sbjct: 115 SVRIPENTPVGTPIFIVNAT 134
Score = 114 bits (288), Expect = 2e-29
Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 34/213 (15%)
Query: 238 NDCPPQFSQDVYNVSILVP--TFTNVAVLQFS---QDVYNV--SILVPTFTNVAVLQLNS 290
+ P F+ ++ +L+ T +V Q D + + + ++ ++
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDT 61
Query: 291 G----------ETNCSHQ---------WSSRIWLHVTVVDVNEHRPILTQSLYETNISES 331
G ET +++ V DVN++ P Y I E+
Sbjct: 62 GVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPEN 121
Query: 332 VPVGSEILKVAASDSDQES--KVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLS 389
PVG+ I V A+D D + VLYS F ID G ++V Q LD E
Sbjct: 122 TPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP-----FFAIDSARGIVTVIQELDYEVTQ 176
Query: 390 HHLLTIMARDQGTPAKRN-FARVSINVLDSNDH 421
+ LT+ A DQ + A ++I + D D
Sbjct: 177 AYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 96.1 bits (240), Expect = 6e-23
Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 45/169 (26%)
Query: 100 NPPTIKSP--DQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGN 157
P + D + ++E+ VG V + A D D D L + + + + F++ D G
Sbjct: 4 RLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGV 63
Query: 158 VLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDL 217
V L + +D ET++++T+ SVSD
Sbjct: 64 VWLRQPLDRETKSEFTVEFSVSDH------------------------------------ 87
Query: 218 GRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNVAVL 264
KV ++V D ND P F Y+V I P T + ++
Sbjct: 88 QGV-----ITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIV 131
Score = 64.9 bits (159), Expect = 3e-12
Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 42/143 (29%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDT---LWYRIVDGDPNSTFSIGNDKG 156
N PT + V + EN VG + ++ A+DPD + Y P F+I + +G
Sbjct: 105 NAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP--FFAIDSARG 162
Query: 157 NVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTD 216
+ + LD+E + V TD
Sbjct: 163 ------------------------------------IVTVIQELDYEVTQAYQLTVNATD 186
Query: 217 LGRPRLTSDTLAKVIVEVTDTND 239
+ R S A + + +TD D
Sbjct: 187 QDKTRPLSTL-ANLAIIITDMQD 208
Score = 53.0 bits (128), Expect = 4e-08
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
EF + +DH T +V+IQV D + N PT + V + EN VG +
Sbjct: 76 SEFTVEFSVSDHQGV---ITRKVNIQVG---DVNDNAPTFHNQPYSVRIPENTPVGTPIF 129
Query: 71 LIQASDPD 78
++ A+DPD
Sbjct: 130 IVNATDPD 137
Score = 32.6 bits (75), Expect = 0.24
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 11 QEFDLLVRATDHGSPNQ-SSTARVSIQVV 38
Q + L V ATD S+ A ++I +
Sbjct: 176 QAYQLTVNATDQDKTRPLSTLANLAIIIT 204
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 189 bits (482), Expect = 1e-55
Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 18/234 (7%)
Query: 298 QWSSRIWLHVTVVDVNEHRPILTQS--LYETNISESVPVGSEILKVAASDSDQESKVLYS 355
+++ + + V DVN+ P + + + P + + + A D D + + Y
Sbjct: 85 KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYF 144
Query: 356 IHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNF----ARV 411
I + F +D SG + + ++L + A DQ
Sbjct: 145 I---VRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEE 201
Query: 412 SINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSI-ASGNIG 470
++++ P+F + + E ++I+ + A + + Y++ A G
Sbjct: 202 RLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGA 257
Query: 471 NVFTMDPILGTIQTARPLD---LSLMSEYMLLVKATDQGAPPLAATVPVQIIVV 521
F + P G ++ A+ LD L Y L+V AT+ + +V + I V
Sbjct: 258 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVT 310
Score = 180 bits (458), Expect = 4e-52
Identities = 55/263 (20%), Positives = 97/263 (36%), Gaps = 27/263 (10%)
Query: 337 EILKVAASDSD--QESKVLYSIHHAQSPLSAAL-----FRIDFHSGALSVAQPLDRESLS 389
++ +++D E K ++ + + + + +GA+ V + D E L
Sbjct: 5 PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELG 64
Query: 390 HH------LLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATS--LVKGRVFETSAVG 441
++ + RV I V D ND PP F ++ V +
Sbjct: 65 PEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN 124
Query: 442 TNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVK 501
T + + A D D N + Y I G F +D G ++T L EY+L VK
Sbjct: 125 TPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVK 182
Query: 502 ATDQGAPP----LAATVPVQIIVVMADND-PPRFAKAELAAELFENEPPGTVVRHIEARS 556
A DQ +T ++ +V P+F AE+ EN+ + + I+A+S
Sbjct: 183 AEDQNGKVDDRRFQSTPEERLSIV--GGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKS 240
Query: 557 T--SSLVFEIIR-GDSDDMFSIN 576
+ + + G F+I
Sbjct: 241 FADREIRYTLKAQGQGAGTFNIG 263
Score = 130 bits (330), Expect = 4e-34
Identities = 55/345 (15%), Positives = 100/345 (28%), Gaps = 81/345 (23%)
Query: 123 VALIQASDPDGDT---LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVS 179
I+ ++ DGDT +++ TF I +D
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP----------------------- 42
Query: 180 DGIHEWTGRHRPSAIRTVVNLDHESLPR------IEFHVQVTDLGRPRLTSDTLAKVIVE 233
E G A+R D+E L + + T + +VI+
Sbjct: 43 WVTVETNG-----AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDN--QRVIIL 95
Query: 234 VTDTNDCPPQFSQDVYNVSILVP-------TFTNVAV--------LQFSQDVYNVSILVP 278
V D ND PP F + +V + + +
Sbjct: 96 VKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFE 155
Query: 279 TFTNVAVLQLN-------------------SGETNCSHQWSSRIWLHVTVVDVNEHRPIL 319
V++ ++ S +++V + P
Sbjct: 156 VDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQF 214
Query: 320 TQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSV 379
YE I E+ S+I+ + A + ++ Y++ F I SG + +
Sbjct: 215 YMPSYEAEIPENQKKDSDIISIKAKSFA-DREIRYTLKAQGQGAG--TFNIGPTSGIVKL 271
Query: 380 AQPLDRESLSH---HLLTIMARDQGTPAKRNFARVSINVLDSNDH 421
A+ LD E L + L + A + ++I V D ND+
Sbjct: 272 AKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315
Score = 93.2 bits (232), Expect = 5e-21
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 23/155 (14%)
Query: 444 IVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPIL--------GTIQTARPLD------ 489
++ T+ D G + + F + G ++ + D
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65
Query: 490 LSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRFAKAELA--AELFENEPP 545
+ ++++ V I+V D ND PP F L A + N PP
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQRVIILVK--DVNDEPPYFINRPLPMQAVVQLNAPP 123
Query: 546 GTVVRHIEAR---STSSLVFEIIRGDSDDMFSINK 577
T V ++AR + ++ + I+R + F +++
Sbjct: 124 NTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDE 158
Score = 88.2 bits (219), Expect = 2e-19
Identities = 26/171 (15%), Positives = 43/171 (25%), Gaps = 40/171 (23%)
Query: 100 NPPTI--KSPDQRVEVTENDAVGFLVALIQASDPD-GDTLWYRIVDGDPNSTFSIGNDKG 156
PP + + V N V +QA DPD + Y IV F + G
Sbjct: 102 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSG 161
Query: 157 NVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTD 216
V ++ +Y L + D
Sbjct: 162 VVRTRGTDLFQLDMEYVLYVKAEDQ-----NGKV-------------------------- 190
Query: 217 LGRPRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNVAVLQ 265
R T + + + PQF Y I +++ ++
Sbjct: 191 --DDRRFQST-PEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIK 237
Score = 65.9 bits (161), Expect = 6e-12
Identities = 33/233 (14%), Positives = 53/233 (22%), Gaps = 97/233 (41%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
E+ L V+A D + + + R+ +
Sbjct: 175 MEYVLYVKAEDQNGKVDDRRFQSTPEE------------------RLSIVGGK------- 209
Query: 71 LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
P P E+ EN + I+A
Sbjct: 210 -----------------------------RAPQFYMPSYEAEIPENQKKDSDIISIKAKS 240
Query: 131 PDGDTLWYRIV-DGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRH 189
+ Y + G TF+IG G
Sbjct: 241 FADREIRYTLKAQGQGAGTFNIGPTSG--------------------------------- 267
Query: 190 RPSAIRTVVNLDHESLPRIEFH---VQVTDLGRPRLTSDTLAKVIVEVTDTND 239
++ LD E L + + V T+ TS + + VTD ND
Sbjct: 268 ---IVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS---VDLTIRVTDVND 314
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 187 bits (478), Expect = 5e-55
Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 22/263 (8%)
Query: 328 ISESVPVGSEILKVAASDSD-QESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRE 386
+ E ++ +D D K+ Y + + +F+I+ +G + + LDRE
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPGSKKIKYIL---SGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 387 SLSHHLLTIMARDQGT-PAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIV 445
+ + LT A D T + I V D ND+ PEF V E S +GT++
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVT 126
Query: 446 QVVATDRD---HGENGVVTYSIASGNIGNVFTMDPILGTIQTARP-LDLSLMSEYMLLVK 501
V ATD D +G + + YSI G F+++P I+TA P +D EY+++++
Sbjct: 127 NVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIKTALPNMDREAKEEYLVVIQ 184
Query: 502 ATDQG--APPLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFENEPPGTVVRHIEAR-- 555
A D G + L+ T + + + D ND PP+FA++ + E+ GT + ++A
Sbjct: 185 AKDMGGHSGGLSGTTTLTVTL--TDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQ 242
Query: 556 ---STSSLVFEIIRGDSDDMFSI 575
+ ++II GD +F I
Sbjct: 243 DIGENAQSSYDIIDGDGTALFEI 265
Score = 182 bits (463), Expect = 9e-53
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 24/235 (10%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHA 359
+ V D+N++ P Y + E +G+ + V A+D+D +K++YSI
Sbjct: 92 FIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILE- 150
Query: 360 QSPLSAALFRIDFHSGALSVAQP-LDRESLSHHLLTIMARDQG--TPAKRNFARVSINVL 416
P F I+ + + A P +DRE+ +L+ I A+D G + +++ +
Sbjct: 151 GQPY----FSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLT 206
Query: 417 DSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTM- 475
D ND+PP+FA SL V E +GT I +V A D+D GEN +Y I G+ +F +
Sbjct: 207 DVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEIT 266
Query: 476 ---DPILGTIQTARPLDLSLMSEYMLLVKATDQGAP-------PLAATVPVQIIV 520
G I+ +PLD Y L V+A + P T V+I+V
Sbjct: 267 SDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 129 bits (327), Expect = 1e-33
Identities = 72/358 (20%), Positives = 124/358 (34%), Gaps = 89/358 (24%)
Query: 107 PDQRVEVTENDAVGFLVALIQASDPD-GD-TLWYRIVDGDPNSTFSIGNDKGNVLLARRV 164
+Q + E ++ +D D G + Y + + F I + G++ +R+
Sbjct: 4 WNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRL 63
Query: 165 DWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTS 224
D E +A+YTL D L
Sbjct: 64 DREEKAEYTLTAQAVDF-----------------------------------ETNKPLEP 88
Query: 225 DTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNVAVLQ-FSQD----------VY 271
+ + I++V D ND P+F Y+ ++ T+V + D VY
Sbjct: 89 PS--EFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVY 146
Query: 272 NVSILVPTFT--------NVAVLQLNSGET-------------NCSHQWSSRIWLHVTVV 310
++ P F+ A+ ++ S S L VT+
Sbjct: 147 SILEGQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLT 206
Query: 311 DVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE--SKVLYSIHHAQSPLSAALF 368
DVN++ P QSLY ++ E V +G+ I +V A+D D ++ Y I ALF
Sbjct: 207 DVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDI---IDGDGTALF 263
Query: 369 RI----DFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAK-------RNFARVSINV 415
I G + + +PLD E+ + L + A + + ++ A V I V
Sbjct: 264 EITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 78.1 bits (193), Expect = 7e-16
Identities = 43/196 (21%), Positives = 67/196 (34%), Gaps = 60/196 (30%)
Query: 72 IQASDPDG-----DTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALI 126
QA D + + I V D + N P + V E +G V +
Sbjct: 75 AQAVDFETNKPLEPPSEFIIKVQ------DINDNAPEFLNGPYHATVPEMSILGTSVTNV 128
Query: 127 QASDPDGDT------LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD 180
A+D D L Y I++G P FSI +
Sbjct: 129 TATDADDPVYGNSAKLVYSILEGQP--YFSIEPETAI----------------------- 163
Query: 181 GIHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLG--RPRLTSDTLAKVIVEVTDT 237
I+T + N+D E+ +Q D+G L+ + V +TD
Sbjct: 164 -------------IKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGT--TTLTVTLTDV 208
Query: 238 NDCPPQFSQDVYNVSI 253
ND PP+F+Q +Y+ S+
Sbjct: 209 NDNPPKFAQSLYHFSV 224
Score = 64.6 bits (158), Expect = 2e-11
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDT---LWYRIVDGDPNSTFSIGNDK- 155
NPP V E+ +G + ++A+D D Y I+DGD + F I +D
Sbjct: 211 NPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQ 270
Query: 156 ---GNVLLARRVDWETQAQYTLNISVSDG 181
G + L + +D+ET+ YTL + ++
Sbjct: 271 AQDGVIRLRKPLDFETKKSYTLKVEAANI 299
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 11 QEFDLLVRATDH-GSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLV 69
E+ L +A D + + I+V D + N P + V E +G V
Sbjct: 69 AEYTLTAQAVDFETNKPLEPPSEFIIKVQ---DINDNAPEFLNGPYHATVPEMSILGTSV 125
Query: 70 ALIQASDPD 78
+ A+D D
Sbjct: 126 TNVTATDAD 134
Score = 30.0 bits (68), Expect = 2.0
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 7/34 (20%)
Query: 11 QEFDLLVRATDHGSPNQ-------SSTARVSIQV 37
+ + L V A + + TA V I V
Sbjct: 288 KSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 177 bits (452), Expect = 1e-52
Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 12/211 (5%)
Query: 321 QSLYETNISESVPVGSEILKVAASDSD--QESKVLYSIH-HAQSPLSAALFRIDFHSGAL 377
+ + E+ G + S+ +E+KV YSI +F I+ +G L
Sbjct: 2 WVIAAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWL 60
Query: 378 SVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFET 437
V QPLDRE+++ ++L A A + + I V D ND+ PEF + +G V E
Sbjct: 61 KVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEG 120
Query: 438 SAVGTNIVQVVATDRD---HGENGVVTYSIASGN----IGNVFTMDPILGTIQTA-RPLD 489
+ GT++++V ATD D + N + Y+I S + N+FT++ G I LD
Sbjct: 121 AVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLD 180
Query: 490 LSLMSEYMLLVKATDQGAPPLAATVPVQIIV 520
Y L+V+A D L+ T I V
Sbjct: 181 RESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Score = 103 bits (259), Expect = 2e-25
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 441 GTNIVQVVATDRDHGENGVVTYSIASGNIG----NVFTMDPILGTIQTARPLDLSLMSEY 496
G +V + + V YSI VF ++ G ++ +PLD +++Y
Sbjct: 15 GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKY 74
Query: 497 MLLVKATDQGAPPLAATVPVQIIVVMADND-PPRFAKAELAAELFENEPPGTVVRHIEA- 554
+L A + + + +I V ND P F + + E PGT V + A
Sbjct: 75 ILYSHAVSSNGEAVEDPMEI-VITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSAT 133
Query: 555 -------RSTSSLVFEIIRGD----SDDMFSIN 576
+++ + I+ D +MF++N
Sbjct: 134 DADDDVNTYNAAIAYTIVSQDPELPHKNMFTVN 166
Score = 102 bits (257), Expect = 3e-25
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHA 359
+ +TV D N++RP TQ ++E +++E G+ ++KV+A+D+D + + + Y+I
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 360 QSPLSAA-LFRIDFHSGALSVA-QPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
L +F ++ +G +SV LDRES + L + A D A+ I V D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 74.3 bits (183), Expect = 3e-15
Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 48/160 (30%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD---TLWYRI----VDGDPNSTFSIGNDKGNVLLARR 163
+ EN+ G + + D ++Y I D P F I + G + + +
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP 65
Query: 164 VDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLT 223
+D E A+Y L + +
Sbjct: 66 LDREAIAKYIL------------------------------------YSHAVSSNGEAVE 89
Query: 224 SDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNV 261
++++ VTD ND P+F+Q+V+ S+ T+V
Sbjct: 90 DPM--EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSV 127
Score = 61.2 bits (149), Expect = 7e-11
Identities = 41/236 (17%), Positives = 54/236 (22%), Gaps = 106/236 (44%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVAL 71
++ L A + I V DQ ND
Sbjct: 73 KYILYSHAVSSNGEAVEDPMEIVITVT---------------DQ------ND-------- 103
Query: 72 IQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDP 131
N P V E G V + A+D
Sbjct: 104 ----------------------------NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDA 135
Query: 132 DGDT------LWYRIVDGDPNST----FSIGNDKGNVLLARRVDWETQAQYTLNISVSDG 181
D D + Y IV DP F++ D G
Sbjct: 136 DDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTG------------------------- 170
Query: 182 IHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTD 236
I + LD ES P VQ DL L++ AK ++ V D
Sbjct: 171 -----------VISVLTSGLDRESYPTYTLVVQAADLQGEGLSTT--AKAVITVKD 213
Score = 34.6 bits (80), Expect = 0.052
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQV 37
+ L+V+A D S+TA+ I V
Sbjct: 185 PTYTLVVQAADLQGEGLSTTAKAVITV 211
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 174 bits (444), Expect = 2e-51
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 15/211 (7%)
Query: 328 ISESVPVGSEILKVAASDSD-QESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRE 386
I E ++ SD D + + Y + + +F ID SG + + LDRE
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSGDGNIKYIL---SGEGAGTIFVIDDKSGNIHATKTLDRE 67
Query: 387 SLSHHLLTIMARDQGTPAKR-NFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIV 445
+ + L A D+ T + + V D ND+PPEF + V E S VGT+++
Sbjct: 68 ERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVI 127
Query: 446 QVVATDRD---HGENGVVTYSIASGNIGNVFTMDPILGTIQTARP-LDLSLMSEYMLLVK 501
QV A+D D +G + + YSI G F+++ G I+TA P +D EY ++++
Sbjct: 128 QVTASDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIRTALPNMDREAKEEYHVVIQ 185
Query: 502 ATDQG--APPLAATVPVQIIVVMADND-PPR 529
A D G L+ T V I + D +
Sbjct: 186 AKDMGGHMGGLSGTTKV-TITLTDDYKDDDK 215
Score = 111 bits (281), Expect = 2e-28
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHA 359
V V D+N++ P +Y N+ E VG+ +++V ASD+D +K++YSI
Sbjct: 93 FIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEG 152
Query: 360 QSPLSAALFRIDFHSGALSVAQP-LDRESLSHHLLTIMARDQG--TPAKRNFARVSINVL 416
Q F ++ +G + A P +DRE+ + + I A+D G +V+I +
Sbjct: 153 QP-----YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLT 207
Query: 417 DSNDHPPE 424
D +
Sbjct: 208 DDYKDDDK 215
Score = 106 bits (266), Expect = 2e-26
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 434 VFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLM 493
+ E + +V + +D D G +G + Y ++ G +F +D G I + LD
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREER 69
Query: 494 SEYMLLVKATDQGAP-PLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFENEPPGTVVR 550
++Y L+ +A D+ PL + V D ND PP F A + E GT V
Sbjct: 70 AQYTLMAQAVDRDTNRPLEPPSEFIVKVQ--DINDNPPEFLHEIYHANVPERSNVGTSVI 127
Query: 551 HIEAR--------STSSLVFEIIRGDSDDMFSIN 576
+ A +++ LV+ I+ G FS+
Sbjct: 128 QVTASDADDPTYGNSAKLVYSILEG--QPYFSVE 159
Score = 81.6 bits (202), Expect = 8e-18
Identities = 34/159 (21%), Positives = 56/159 (35%), Gaps = 41/159 (25%)
Query: 107 PDQRVEVTENDAVGFLVALIQASDPD-GD-TLWYRIVDGDPNSTFSIGNDKGNVLLARRV 164
+Q + E ++ SD D GD + Y + + F I + GN+ + +
Sbjct: 5 WNQFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTL 64
Query: 165 DWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTS 224
D E +AQYTL Q D R
Sbjct: 65 DREERAQYTL------------------------------------MAQAVDRDTNRPLE 88
Query: 225 DTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNV 261
++ IV+V D ND PP+F ++Y+ ++ T+V
Sbjct: 89 PP-SEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSV 126
Score = 63.5 bits (155), Expect = 1e-11
Identities = 40/183 (21%), Positives = 54/183 (29%), Gaps = 56/183 (30%)
Query: 72 IQASDPDG-----DTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALI 126
QA D D + + V D + NPP V E VG V +
Sbjct: 76 AQAVDRDTNRPLEPPSEFIVKVQ------DINDNPPEFLHEIYHANVPERSNVGTSVIQV 129
Query: 127 QASDPDGDT------LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD 180
ASD D T L Y I++G P FS+ G
Sbjct: 130 TASDADDPTYGNSAKLVYSILEGQP--YFSVEAQTG------------------------ 163
Query: 181 GIHEWTGRHRPSAIRTVV-NLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTND 239
IRT + N+D E+ +Q D+G KV + +TD
Sbjct: 164 ------------IIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYK 211
Query: 240 CPP 242
Sbjct: 212 DDD 214
Score = 33.4 bits (77), Expect = 0.13
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 11 QEFDLLVRATDHGS--PNQSSTARVSIQVVRLPDESKNPP 48
+E+ ++++A D G S T +V+I + D+ K+
Sbjct: 178 EEYHVVIQAKDMGGHMGGLSGTTKVTITLT---DDYKDDD 214
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 170 bits (433), Expect = 7e-50
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 13/205 (6%)
Query: 324 YETNISESVPVGSEILKVAASDSDQ-ESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQP 382
+ E + + SD D+ + + Y + + LF I+ ++G + +
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYIL---SGDGAGDLFIINENTGDIQATKR 62
Query: 383 LDRESLSHHLLTIMARDQGT-PAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVG 441
LDRE ++L A ++ T + I + D ND+ P F + V E + VG
Sbjct: 63 LDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVG 122
Query: 442 TNIVQVVATDRD---HGENGVVTYSIASGNIGNVFTMDPILGTIQTA-RPLDLSLMSEYM 497
T +VQV ATD D +G + V YSI G F+++ G I+TA +D +Y
Sbjct: 123 TFVVQVTATDADDPTYGNSAKVVYSILQGQ--PYFSVESETGIIKTALLNMDRENREQYQ 180
Query: 498 LLVKATDQGAP--PLAATVPVQIIV 520
++++A D G L+ T V I +
Sbjct: 181 VVIQAKDMGGQMGGLSGTTTVNITL 205
Score = 105 bits (265), Expect = 2e-26
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSE 495
E + V + +D+D G +G + Y ++ G++F ++ G IQ + LD
Sbjct: 12 EYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPV 70
Query: 496 YMLLVKATDQG-APPLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFENEPPGTVVRHI 552
Y+L +A ++ P+ I + D ND P F K A + E GT V +
Sbjct: 71 YILRAQAVNRRTGRPVEPESEFIIKIH--DINDNEPIFTKDVYTATVPEMADVGTFVVQV 128
Query: 553 EAR--------STSSLVFEIIRGDSDDMFSIN 576
A +++ +V+ I++G FS+
Sbjct: 129 TATDADDPTYGNSAKVVYSILQG--QPYFSVE 158
Score = 98.9 bits (247), Expect = 6e-24
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHA 359
+ + D+N++ PI T+ +Y + E VG+ +++V A+D+D +KV+YSI
Sbjct: 92 FIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG 151
Query: 360 QSPLSAALFRIDFHSGALSVAQ-PLDRESLSHHLLTIMARDQGTPAKR--NFARVSINVL 416
Q F ++ +G + A +DRE+ + + I A+D G V+I +
Sbjct: 152 QP-----YFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLT 206
Query: 417 D 417
D
Sbjct: 207 D 207
Score = 80.8 bits (200), Expect = 1e-17
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 41/159 (25%)
Query: 107 PDQRVEVTENDAVGFLVALIQASDPD-GD-TLWYRIVDGDPNSTFSIGNDKGNVLLARRV 164
+Q + E + SD D GD +L Y + F I + G++ +R+
Sbjct: 4 ANQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKRL 63
Query: 165 DWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTS 224
D E + Y L + GRP
Sbjct: 64 DREEKPVYILRAQAVNR----------------------------------RTGRPV--- 86
Query: 225 DTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNV 261
+ ++ I+++ D ND P F++DVY ++ T V
Sbjct: 87 EPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV 125
Score = 57.3 bits (139), Expect = 1e-09
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 20/122 (16%)
Query: 72 IQASDPDG-----DTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALI 126
QA + + I + D + N P V E VG V +
Sbjct: 75 AQAVNRRTGRPVEPESEFIIKIH------DINDNEPIFTKDVYTATVPEMADVGTFVVQV 128
Query: 127 QASDPDGDT------LWYRIVDGDPNSTFSIGNDKGNVLLARR-VDWETQAQYTLNISVS 179
A+D D T + Y I+ G P FS+ ++ G + A +D E + QY + I
Sbjct: 129 TATDADDPTYGNSAKVVYSILQGQP--YFSVESETGIIKTALLNMDRENREQYQVVIQAK 186
Query: 180 DG 181
D
Sbjct: 187 DM 188
Score = 31.5 bits (72), Expect = 0.52
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 11 QEFDLLVRATDHGSPNQ--SSTARVSIQV 37
+++ ++++A D G S T V+I +
Sbjct: 177 EQYQVVIQAKDMGGQMGGLSGTTTVNITL 205
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 168 bits (427), Expect = 7e-49
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 323 LYETNISESVPVGSEILKVAASDSDQE--SKVLYSIH-HAQSPLSAALFRIDFHSGALSV 379
+ N+ E+ G ++ SD++ + YS+ +F I+ SG LSV
Sbjct: 4 IPPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSV 62
Query: 380 AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSA 439
+PLDRE ++ L A D N + INV+D ND+ PEF + G V E S
Sbjct: 63 TKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSK 122
Query: 440 VGTNIVQVVATDRD--HGENGVVTYSIASGNIG----NVFTMDPILGTIQTA-RPLDLSL 492
GT ++ V A D D + NG++ Y I S N+FT++ G I T LD
Sbjct: 123 PGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREK 182
Query: 493 MSEYMLLVKATDQGAPP---LAATVPVQIIV 520
+ +Y L+++ATD P L+ T I V
Sbjct: 183 VQQYTLIIQATDMEGNPTYGLSNTATAVITV 213
Score = 103 bits (260), Expect = 1e-25
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 17/152 (11%)
Query: 441 GTNIVQVVATDRDHGENGVVTYSIASGNIG----NVFTMDPILGTIQTARPLDLSLMSEY 496
G ++V D +N + YS+ +F ++PI G + +PLD L++ +
Sbjct: 15 GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF 74
Query: 497 MLLVKATDQGAPPLAATVPVQIIVVMADND-PPRFAKAELAAELFENEPPGTVVRHIEAR 555
L A D + + + +I V+ ND P F + E PGT V + A
Sbjct: 75 HLRAHAVDINGNQVENPIDI-VINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAI 133
Query: 556 -----ST--SSLVFEIIRG----DSDDMFSIN 576
+ L + I+ S +MF+IN
Sbjct: 134 DADDPNALNGMLRYRILSQAPSTPSPNMFTIN 165
Score = 97.8 bits (244), Expect = 2e-23
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 300 SSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE----SKVLYS 355
+ I + + V+D+N++RP ++ ++ E G+ ++ V A D+D + Y
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148
Query: 356 IHHAQ-SPLSAALFRIDFHSGAL-SVAQPLDRESLSHHLLTIMARDQGTPAKRNF---AR 410
I S S +F I+ +G + +VA LDRE + + L I A D A
Sbjct: 149 ILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTAT 208
Query: 411 VSINVLD 417
I V D
Sbjct: 209 AVITVTD 215
Score = 75.9 bits (187), Expect = 7e-16
Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 48/160 (30%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD---TLWYRI----VDGDPNSTFSIGNDKGNVLLARR 163
+ + EN G + D D +L Y + D P F I G + + +
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 65
Query: 164 VDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLT 223
+D E A++ L D+ ++
Sbjct: 66 LDRELIARFHLR------------------------------------AHAVDINGNQVE 89
Query: 224 SDTLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNV 261
+ +++ V D ND P+F V+N S+ T V
Sbjct: 90 NPID--IVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV 127
Score = 63.5 bits (155), Expect = 1e-11
Identities = 35/178 (19%), Positives = 50/178 (28%), Gaps = 61/178 (34%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
F L A D + + I V+ D + N P V E G V
Sbjct: 72 ARFHLRAHAVDINGNQVENPIDIVINVI---DMNDNRPEFLHQVWNGSVPEGSKPGTYVM 128
Query: 71 LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
+ A D D D
Sbjct: 129 TVTAIDAD---------------------------------------------------D 137
Query: 131 PDGD--TLWYRIVDGDPNST----FSIGNDKGNVLLARRV-DWETQAQYTLNISVSDG 181
P+ L YRI+ P++ F+I N+ G+++ D E QYTL I +D
Sbjct: 138 PNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDM 195
Score = 28.5 bits (64), Expect = 5.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 11 QEFDLLVRATDHGSPNQ---SSTARVSIQV 37
Q++ L+++ATD S+TA I V
Sbjct: 184 QQYTLIIQATDMEGNPTYGLSNTATAVITV 213
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 165 bits (419), Expect = 7e-48
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 330 ESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLS 389
P+ + K+ +S + +Y I + + +F++ + G + + LDRE +
Sbjct: 13 IDSPLPHHVGKLTSSVGN--KNAMYII---EGESANTIFKVQGYDGDIYAFERLDREKKA 67
Query: 390 HHLLTIMARDQGT-PAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVV 448
+ LT D+ + ++ I V D ND+ P F + G V E S +GT++ +V
Sbjct: 68 EYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVT 127
Query: 449 ATDRD---HGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQ 505
A D D + VTY I GN FT+D LD S Y ++VKA D
Sbjct: 128 AEDADDPTVAGHATVTYQIIKGN--EYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDA 185
Query: 506 -GAPPLAATVPVQIIV 520
G ++T V I +
Sbjct: 186 LGLTGESSTATVIIRL 201
Score = 102 bits (257), Expect = 2e-25
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE-----SKVLYSIHHA 359
+ V D+N++ PI Q ++ ++ E +G+ + KV A D+D + V Y I
Sbjct: 90 FIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKG 149
Query: 360 QSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQ-GTPAKRNFARVSINVLD 417
F +D + LDRES S + + + A+D G + + A V I + D
Sbjct: 150 NE-----YFTVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 92.4 bits (230), Expect = 1e-21
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 19/152 (12%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSE 495
S + ++ ++ ++ N Y I + +F + G I LD +E
Sbjct: 13 IDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAE 68
Query: 496 YMLLVKATDQ-GAPPLAATVPVQIIVVMAD-ND-PPRFAKAELAAELFENEPPGTVVRHI 552
Y L D+ L I V D ND P F + + E GT V +
Sbjct: 69 YELTAHIIDRRNNRSLEPPSKFIIKVS--DINDNAPIFVQKIFNGSVPEMSRLGTSVTKV 126
Query: 553 EAR--------STSSLVFEIIRGDSDDMFSIN 576
A +++ ++II+G ++ F+++
Sbjct: 127 TAEDADDPTVAGHATVTYQIIKG--NEYFTVD 156
Score = 80.8 bits (200), Expect = 9e-18
Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 40/155 (25%)
Query: 110 RVEVTENDAVGFLVALIQASDPDGD-TLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWET 168
R+ + E + + + G+ Y I N+ F + G++ R+D E
Sbjct: 6 RMHIREEIDSPLPHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREK 65
Query: 169 QAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLA 228
+A+Y L + D R +
Sbjct: 66 KAEYEL------------------------------------TAHIIDRRNNRSLEPP-S 88
Query: 229 KVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNV 261
K I++V+D ND P F Q ++N S+ T+V
Sbjct: 89 KFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV 123
Score = 57.3 bits (139), Expect = 1e-09
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 19/121 (15%)
Query: 72 IQASDPDG-----DTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALI 126
D + I V D + N P V E +G V +
Sbjct: 73 AHIIDRRNNRSLEPPSKFIIKVS------DINDNAPIFVQKIFNGSVPEMSRLGTSVTKV 126
Query: 127 QASDPDGDT------LWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSD 180
A D D T + Y+I+ G+ F++ + +D E+Q+ Y + + D
Sbjct: 127 TAEDADDPTVAGHATVTYQIIKGNE--YFTVDDSGVIFTARADLDRESQSAYEIIVKAKD 184
Query: 181 G 181
Sbjct: 185 A 185
Score = 30.0 bits (68), Expect = 1.4
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 11 QEFDLLVRATDH-GSPNQSSTARVSIQV 37
++++V+A D G +SSTA V I++
Sbjct: 174 SAYEIIVKAKDALGLTGESSTATVIIRL 201
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 164 bits (418), Expect = 1e-47
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Query: 328 ISESVPVGSEILKVAASDSDQES--KVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDR 385
++ P ++ KV SD + S ++ Q P FRI+ ++G++SV + LDR
Sbjct: 12 ENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGV-DQDPKG--TFRINENTGSVSVTRTLDR 68
Query: 386 ESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIV 445
E+++ + L + D + + V+D ND+ P F G V E S GT ++
Sbjct: 69 ETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVM 128
Query: 446 QVVATDRDH--GENGVVTYSIASGNI----GNVFTMDPILGTIQTARP---LD--LSLMS 494
++ A D D +N ++ Y+I N+F +DP G I T LD
Sbjct: 129 RMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENP 188
Query: 495 EYMLLVKATDQG--APPLAATVPVQIIV 520
+Y L+++A D L T I++
Sbjct: 189 KYELIIEAQDMAGLDVGLTGTATATIVI 216
Score = 113 bits (284), Expect = 7e-29
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSE 495
+ ++ +VV +DR G +T + F ++ G++ R LD ++
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73
Query: 496 YMLLVKATDQGAPPLAATVPVQIIVVMADND-PPRFAKAELAAELFENEPPGTVVRHIEA 554
Y L V+ TD L VP+ ++V+ ND P F + + E P GT V + A
Sbjct: 74 YQLYVETTDASGKTLEGPVPL-EVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTA 132
Query: 555 R-------STSSLVFEIIRGDSD----DMFSIN 576
+ L + I + D +MF I+
Sbjct: 133 FDADDPATDNALLRYNIRQQTPDKPSPNMFYID 165
Score = 92.1 bits (229), Expect = 2e-21
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 305 LHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQE----SKVLYSI-HHA 359
L V V+D N++RPI + Y ++ E P G+ ++++ A D+D + + Y+I
Sbjct: 94 LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQT 153
Query: 360 QSPLSAALFRIDFHSGALSVAQP---LDRESLSH--HLLTIMARDQG--TPAKRNFARVS 412
S +F ID G + LDRE+L + + L I A+D A +
Sbjct: 154 PDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATAT 213
Query: 413 INVLD 417
I + D
Sbjct: 214 IVIDD 218
Score = 80.1 bits (198), Expect = 2e-17
Identities = 38/158 (24%), Positives = 52/158 (32%), Gaps = 45/158 (28%)
Query: 111 VEVTEND--AVGFLVALIQASDPDGDT---LWYRIVDGDPNSTFSIGNDKGNVLLARRVD 165
+ + EN V + SD + L + VD DP TF I + G+V + R +D
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 166 WETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSD 225
ET A Y L V+ TD L
Sbjct: 68 RETIATYQLY------------------------------------VETTDASGKTLEGP 91
Query: 226 TLAKVIVEVTDTNDCPPQFSQDVYNVSIL--VPTFTNV 261
+ V V D ND P F + Y ++ PT T V
Sbjct: 92 VP--LEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127
Score = 52.4 bits (126), Expect = 7e-08
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 54/180 (30%)
Query: 72 IQASDPDGDTLWY----RIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQ 127
++ +D G TL + V+ D++ N P + V E G V +
Sbjct: 78 VETTDASGKTLEGPVPLEVIVI------DQNDNRPIFREGPYIGHVMEGSPTGTTVMRMT 131
Query: 128 ASDPDGDT-----LWYRIVDGDPN----STFSIGNDKGNVLLARRVDWETQAQYTLNISV 178
A D D L Y I P+ + F I +KG++
Sbjct: 132 AFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDI-------------------- 171
Query: 179 SDGIHEWTGRHRPSAIRTVVNLDHESL--PRIEFHVQVTDLGRPRLTSDTLAKVIVEVTD 236
+ + LD E+L P+ E ++ D+ + A + + D
Sbjct: 172 -------------VTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 51.6 bits (124), Expect = 1e-07
Identities = 33/180 (18%), Positives = 51/180 (28%), Gaps = 61/180 (33%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
+ L V TD + + V+ D++ N P + V E G V
Sbjct: 72 ATYQLYVETTDASGKTLEGPVPLEVIVI---DQNDNRPIFREGPYIGHVMEGSPTGTTVM 128
Query: 71 LIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASD 130
+ A D D T+N AL++
Sbjct: 129 RMTAFDADDPA--------------------------------TDN-------ALLR--- 146
Query: 131 PDGDTLWYRIVDGDPN----STFSIGNDKGNVLLARRV---DWET--QAQYTLNISVSDG 181
Y I P+ + F I +KG+++ D ET +Y L I D
Sbjct: 147 -------YNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDM 199
Score = 29.3 bits (66), Expect = 2.9
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 12 EFDLLVRATDHG--SPNQSSTARVSIQV 37
+++L++ A D + TA +I +
Sbjct: 189 KYELIIEAQDMAGLDVGLTGTATATIVI 216
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 161 bits (409), Expect = 5e-46
Identities = 45/245 (18%), Positives = 71/245 (28%), Gaps = 36/245 (14%)
Query: 320 TQSLYETNISESVPVGSEILKVAASDSDQES----KVLYSIHHAQSPLSAA--LFRIDFH 373
++ Y + G+ +L V A E ++ ++ RI
Sbjct: 4 SRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQED 63
Query: 374 SGALSVAQPLDRESLS--------HHLLTIMARDQGTPAKRN------FARVSINVLDSN 419
+G L + + LD S LLT+ + +P + N
Sbjct: 64 TGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFN 123
Query: 420 DHPPE----------FATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNI 469
P F + R+ E GT + + V Y + G
Sbjct: 124 TSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE- 182
Query: 470 GNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQ-GAPPLAATVPVQIIVVMAD-ND- 526
G F P + T LD +Y L+ T GA VP + V D +D
Sbjct: 183 GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTV--YDEDDS 240
Query: 527 PPRFA 531
P F
Sbjct: 241 APEFE 245
Score = 111 bits (280), Expect = 4e-28
Identities = 40/330 (12%), Positives = 71/330 (21%), Gaps = 106/330 (32%)
Query: 110 RVEVTENDAVGFLVALIQASDPDGD-----TLWYRI-----VDGDPNSTFSIGNDKGNVL 159
++ + A G + + A + L + N+ I D G +
Sbjct: 9 WEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLY 68
Query: 160 LARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGR 219
L R +D + + ++ + + V ++
Sbjct: 69 LQRSLDHSSWEKLSVRNRGFPLL------------------------TVYLKVFLSPTSL 104
Query: 220 PRLTSDTLAKVIVEVTDTNDCPPQFSQDVYNVSILVPTFTNVAVLQFSQDVYNVSILVPT 279
V + N P S L F + +
Sbjct: 105 REGECQWPGCARVYFSFFNTSFPACSS------------LKPRELCFPETRPSFR----- 147
Query: 280 FTNVAVLQLNSGETNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEIL 339
I E+ P G+
Sbjct: 148 ------------------------------------------------IRENRPPGTFHQ 159
Query: 340 KVAASDSDQE--SKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMA 397
V Y + + FR S +S LDRE + L +
Sbjct: 160 FRLLPVQFLCPQISVAYRLLEGEG----LPFRSAPDSLEVSTRWALDREQREKYELVAVC 215
Query: 398 RDQ-GTPAKRNFARVSINVLDSNDHPPEFA 426
G + + V D +D PEF
Sbjct: 216 TVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 74.2 bits (182), Expect = 4e-15
Identities = 24/189 (12%), Positives = 52/189 (27%), Gaps = 37/189 (19%)
Query: 425 FATSLVKGRVFETSAVGTNIVQVVAT--DRDHGENGVVTYSI-----ASGNIGNVFTMDP 477
F+ +++ A GT ++ V A + + + + + N +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 478 ILGTIQTARPLDLSLMSEY--------------MLLVKATDQGAPPLAATVPVQIIV-VM 522
G + R LD S + + + T ++
Sbjct: 63 DTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFF 122
Query: 523 ADNDP---------PRFAKAELAAELFENEPPGTVVRHIEAR-----STSSLVFEIIRGD 568
+ P F + + + EN PPGT + S+ + ++ G+
Sbjct: 123 NTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE 182
Query: 569 SDDMFSINK 577
F
Sbjct: 183 -GLPFRSAP 190
Score = 71.9 bits (176), Expect = 3e-14
Identities = 20/153 (13%), Positives = 33/153 (21%), Gaps = 41/153 (26%)
Query: 96 DESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGD---TLWYRIVDGDPNSTFSIG 152
+ EN G ++ YR+++G+ F
Sbjct: 131 SLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSA 189
Query: 153 NDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHV 212
D V +D E + +Y L +
Sbjct: 190 PDSLEVSTRWALDREQREKYELVAVCTV-------------------------------- 217
Query: 213 QVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQFS 245
G V V D +D P+F
Sbjct: 218 ---HAGAREEVVMV--PFPVTVYDEDDSAPEFE 245
Score = 33.4 bits (76), Expect = 0.14
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 11 QEFDLLVRATDH-GSPNQSSTARVSIQVVRLPDESKNPPTI 50
++++L+ T H G+ + + V DE + P
Sbjct: 207 EKYELVAVCTVHAGAREEVVMVPFPVTVY---DEDDSAPEF 244
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 114 bits (287), Expect = 3e-30
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQES--KVLYSIHHAQSPLS 364
+ N++ P +S+YE +++E+ G+ IL++ A+D D ++ Y A +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 365 AALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPP 423
L R+D SG LSV +DRE ++ T+MARD+G P K + A V +N+ D ND+ P
Sbjct: 62 R-LLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 109 bits (275), Expect = 9e-29
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 413 INVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSI--ASGNIG 470
+ ND+ P F S+ + + E SA GT I+Q+ A D D G NG + Y A+ ++
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 471 NVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVV-MADNDP 527
+ +D G + +D +++ V A D+G PP V + + DN P
Sbjct: 62 RLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 64.8 bits (159), Expect = 6e-13
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 37/145 (25%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNS--TFSIGNDKGN 157
N P + ++ EN A G + ++A+D D G N + G +
Sbjct: 10 NSPRFEKSVYEADLAENSAPGTPILQLRAADLD---------VG-VNGQIEYVFGAATES 59
Query: 158 VLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDL 217
V + L + E +G + + +D E + ++ F V D
Sbjct: 60 V------------RRLLRL------DETSG-----WLSVLHRIDREEVNQLRFTVMARDR 96
Query: 218 GRPRLTSDTLAKVIVEVTDTNDCPP 242
G+P T A V++ + D ND P
Sbjct: 97 GQPPKTDK--ATVVLNIKDENDNVP 119
Score = 41.7 bits (99), Expect = 7e-05
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 232 VEVTDTNDCPPQFSQDVYNVSIL 254
+ ND P+F + VY +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLA 24
Score = 33.2 bits (77), Expect = 0.049
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPP 48
+ V A D G P ++ A V + + DE+ N P
Sbjct: 85 NQLRFTVMARDRGQPPKTDKATVVLNIK---DENDNVP 119
Score = 32.1 bits (74), Expect = 0.13
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 46 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPD 78
N P + ++ EN A G + ++A+D D
Sbjct: 10 NSPRFEKSVYEADLAENSAPGTPILQLRAADLD 42
Score = 30.5 bits (70), Expect = 0.44
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 525 ND-PPRFAKAELAAELFENEPPGTVVRHIEAR 555
ND PRF K+ A+L EN PGT + + A
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAA 39
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 107 bits (270), Expect = 5e-28
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 413 INVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSI---ASGNI 469
+ ND+ P F V+ + E + VGT+++Q+ ATD D G N + Y +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 470 GNVFTMDPILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQII 519
+F ++ G I R LD + + + V A+D + P ATV + +
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVT 111
Score = 102 bits (256), Expect = 3e-26
Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 307 VTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQES--KVLYSIHHAQSPLS 364
+ N++RP+ + E +I E+ PVG+ ++++ A+D+D S ++ Y +P +
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 365 AALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSN 419
LF ++ +G ++V + LDRE + H +T++A D + R A V+INV D N
Sbjct: 62 KRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPAR--ATVTINVTDVN 114
Score = 50.2 bits (121), Expect = 5e-08
Identities = 30/145 (20%), Positives = 42/145 (28%), Gaps = 46/145 (31%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVL 159
N P K V + EN VG V + A+D D G N +
Sbjct: 10 NRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD---------IG-SN---------AEI- 49
Query: 160 LARRVDWETQAQYTLNISVSDG------IHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQ 213
+Y V+ ++ TG I +LD E + V
Sbjct: 50 -----------RYIFGAQVAPATKRLFALNNTTG-----LITVQRSLDREETAIHKVTVL 93
Query: 214 VTDLGRPRLTSDTLAKVIVEVTDTN 238
+D A V + VTD N
Sbjct: 94 ASDGSSTPAR----ATVTINVTDVN 114
Score = 40.5 bits (96), Expect = 1e-04
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 232 VEVTDTNDCPPQFSQDVYNVSIL 254
+ ND P F + V I
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIP 24
Score = 31.7 bits (73), Expect = 0.20
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 46 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPD 78
N P K V + EN VG V + A+D D
Sbjct: 10 NRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD 42
Score = 30.1 bits (69), Expect = 0.60
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 17/65 (26%)
Query: 525 ND-PPRFAKAELAAELFENEPPGTVVRHIEAR------------STSSLVFEIIRGDSDD 571
ND P F + ++ + EN P GT V + A + V +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK----R 63
Query: 572 MFSIN 576
+F++N
Sbjct: 64 LFALN 68
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 93.2 bits (232), Expect = 4e-23
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSE 495
+ ++ +VV +DR G +T + F ++ G++ R LD ++
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIAT 73
Query: 496 YMLLVKATDQGAPPLAATVPVQIIVV 521
Y L V+ TD L VP+++IV+
Sbjct: 74 YQLYVETTDASGKTLEGPVPLEVIVI 99
Score = 72.8 bits (179), Expect = 6e-16
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 330 ESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLS 389
+ P ++ KV SD + SK + FRI+ ++G++SV + LDRE+++
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQD-PKGTFRINENTGSVSVTRTLDRETIA 72
Query: 390 HHLLTIMARDQGTPAKRNFARVSINVLD 417
+ L + D + + V+D
Sbjct: 73 TYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 59.7 bits (145), Expect = 2e-11
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 111 VEVTENDAVGFLVALIQASDPDGDT-----LWYRIVDGDPNSTFSIGNDKGNVLLARRVD 165
+ + EN F + + D D L + VD DP TF I + G+V + R +D
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLD 67
Query: 166 WETQAQYTLNISVSDG 181
ET A Y L + +D
Sbjct: 68 RETIATYQLYVETTDA 83
Score = 32.0 bits (73), Expect = 0.13
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVV 38
+ L V TD + + V+
Sbjct: 72 ATYQLYVETTDASGKTLEGPVPLEVIVI 99
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 93.5 bits (233), Expect = 4e-23
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 327 NISESVPVGSEILKVAASDSDQES--KVLYSIH-HAQSPLSAALFRIDFHSGALSVAQPL 383
N+ E+ G ++ S ++ + YS+ +F I+ SG LSV +PL
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 384 DRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEF 425
DRE ++ L A D N + INV+D ND+ PEF
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 82.3 bits (204), Expect = 4e-19
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 439 AVGTNIVQVVATDRDHGENGVVTYSIASGNIG----NVFTMDPILGTIQTARPLDLSLMS 494
+ G ++V +N + YS+ +F ++PI G + +PLD L++
Sbjct: 15 SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIA 74
Query: 495 EYMLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRF 530
+ L A D + + + I V+ D ND P F
Sbjct: 75 RFHLRAHAVDINGNQVENPIDIVINVI--DMNDNRPEF 110
Score = 64.2 bits (157), Expect = 8e-13
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 46/141 (32%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD---TLWYRI----VDGDPNSTFSIGNDKGNVLLARR 163
+ + EN + G + D +L Y + D P F I G + + +
Sbjct: 9 INLPEN-SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 164 VDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLT 223
+D E A++ L D+ ++
Sbjct: 68 LDRELIARFHL------------------------------------RAHAVDINGNQVE 91
Query: 224 SDTLAKVIVEVTDTNDCPPQF 244
+ +++ V D ND P+F
Sbjct: 92 NP--IDIVINVIDMNDNRPEF 110
Score = 31.9 bits (73), Expect = 0.13
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPT 49
F L A D + + I V+ D + N P
Sbjct: 75 RFHLRAHAVDINGNQVENPIDIVINVI---DMNDNRPE 109
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 90.9 bits (226), Expect = 4e-22
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Query: 330 ESVPVGSEILKVAA-SDSDQESKVLYSIH-HAQSPLSAALFRIDFHSGALSVAQPLDRES 387
E + + I K+ + ++ K+ Y + +F + +G L+V LDRE
Sbjct: 23 EDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREE 82
Query: 388 LSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEF 425
LLT A D + I VLD ND+ P F
Sbjct: 83 TPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 80.5 bits (199), Expect = 2e-18
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSI----ASGNIGNVFTMDPILGTIQTARPLDLS 491
E + I ++ +D +TY + +F + G + LD
Sbjct: 23 EDLSKKNPIAKI-HSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81
Query: 492 LMSEYMLLVKATDQGAPPLAATVPVQIIVVMAD-ND-PPRFAK 532
++L A D + + ++I V+ D ND P F +
Sbjct: 82 ETPFFLLTGYALDARGNNVEKPLELRIKVL--DINDNEPVFTQ 122
Score = 64.3 bits (157), Expect = 1e-12
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 44/143 (30%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD--TLWYRI----VDGDPNSTFSIGNDKGNVLLARRV 164
+ E+ + +A I + + + Y+ + P F D G + + +
Sbjct: 19 LREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSIL 78
Query: 165 DWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTS 224
D E + L D +
Sbjct: 79 DREETPFFLL------------------------------------TGYALDARGNNVEK 102
Query: 225 DTLAKVIVEVTDTNDCPPQFSQD 247
++ ++V D ND P F+QD
Sbjct: 103 P--LELRIKVLDINDNEPVFTQD 123
Score = 31.5 bits (72), Expect = 0.27
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPT 49
F L A D N + I+V+ D + N P
Sbjct: 85 FFLLTGYALDARGNNVEKPLELRIKVL---DINDNEPV 119
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 86.7 bits (215), Expect = 7e-21
Identities = 17/81 (20%), Positives = 35/81 (43%)
Query: 440 VGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLL 499
++ +V+ ++ G ++ + +F ++ I G + RPLD ++ Y L
Sbjct: 17 FPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELE 76
Query: 500 VKATDQGAPPLAATVPVQIIV 520
V+ TD + V + I V
Sbjct: 77 VEVTDLSGKIIDGPVRLDISV 97
Score = 68.2 bits (167), Expect = 2e-14
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 324 YETNISES--VPVGSEILKVAASDSDQ--ESKVLYSIHHAQSPLSAALFRIDFHSGALSV 379
I E+ P + KV S+ + + ++ +FRI+ SG +SV
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKG---VDQDPKGIFRINEISGDVSV 61
Query: 380 AQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
+PLDRE+++++ L + D R+ I+V+D
Sbjct: 62 TRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 57.4 bits (139), Expect = 1e-10
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 111 VEVTENDAVGF--LVALIQASDPDGD---TLWYRIVDGDPNSTFSIGNDKGNVLLARRVD 165
+ + EN F V + S+ L + VD DP F I G+V + R +D
Sbjct: 7 ILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLD 66
Query: 166 WETQAQYTLNISVSDG 181
E A Y L + V+D
Sbjct: 67 REAIANYELEVEVTDL 82
Score = 30.9 bits (70), Expect = 0.32
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQV 37
++L V TD R+ I V
Sbjct: 72 NYELEVEVTDLSGKIIDGPVRLDISV 97
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 86.3 bits (214), Expect = 1e-20
Identities = 17/82 (20%), Positives = 34/82 (41%)
Query: 440 VGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSEYMLL 499
+ +VV +DR G + +F ++ G + + LD + Y L
Sbjct: 17 FPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQ 76
Query: 500 VKATDQGAPPLAATVPVQIIVV 521
V+ TD+ + V ++I+V+
Sbjct: 77 VETTDENGKTIEGPVDLEILVI 98
Score = 72.0 bits (177), Expect = 9e-16
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 327 NISES--VPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLD 384
+I E+ +P + +V SD SK+ +F+I+ +SG +SV + LD
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQE-PKGIFKINENSGEVSVTKALD 66
Query: 385 RESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
RE++ + L + D+ + I V+D
Sbjct: 67 REAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 60.1 bits (146), Expect = 1e-11
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 111 VEVTENDA--VGFLVALIQASDPDGDT---LWYRIVDGDPNSTFSIGNDKGNVLLARRVD 165
+ + EN +V + SD + L+ + VD +P F I + G V + + +D
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALD 66
Query: 166 WETQAQYTLNISVSDG 181
E Y L + +D
Sbjct: 67 REAIPSYQLQVETTDE 82
Score = 30.8 bits (70), Expect = 0.31
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVV 38
+ L V TD + I V+
Sbjct: 71 PSYQLQVETTDENGKTIEGPVDLEILVI 98
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 83.2 bits (206), Expect = 1e-19
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSE 495
E + V + +D D G +G + Y ++ G VFT+D G I + LD S+
Sbjct: 13 EYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQ 71
Query: 496 YMLLVKATDQGA-PPLAATVPVQIIV 520
Y L +A D+ P+ I +
Sbjct: 72 YTLRAQALDRRTGRPMEPESEFIIKI 97
Score = 72.0 bits (177), Expect = 1e-15
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 328 ISESVPVGSEILKVAASDSDQ-ESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRE 386
+ E + SD D+ + + Y + + +F ID +G + Q LDRE
Sbjct: 11 LEEYTGTDPLYVGKLHSDMDRGDGSIKYIL---SGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 387 SLSHHLLTIMARDQGTPAKR-NFARVSINVLD 417
S + L A D+ T + I + D
Sbjct: 68 ERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 50.1 bits (120), Expect = 5e-08
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 111 VEVTENDAVGFLVALIQ-ASDPDGD--TLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWE 167
V E + + + SD D ++ Y + F+I + G++ +R+D E
Sbjct: 8 FFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDRE 67
Query: 168 TQAQYTLNISVSD 180
++QYTL D
Sbjct: 68 ERSQYTLRAQALD 80
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 76.7 bits (189), Expect = 2e-17
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 436 ETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLMSE 495
E S +V + TD D G + + Y ++ G +F ++ I G I + LD +E
Sbjct: 12 EFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAE 70
Query: 496 YMLLVKATDQ-GAPPLAATVPVQIIV 520
Y L +A D PL I V
Sbjct: 71 YTLTAQAVDFETNKPLEPPSEFIIKV 96
Score = 67.5 bits (165), Expect = 4e-14
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 328 ISESVPVGSEILKVAASDSD-QESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRE 386
+ E ++ +D D K+ Y + + +F+I+ +G + + LDRE
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPGSKKIKYIL---SGDGAGTIFQINDITGDIHAIKRLDRE 66
Query: 387 SLSHHLLTIMARDQGTPAKR-NFARVSINVLD 417
+ + LT A D T + I V D
Sbjct: 67 EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 48.6 bits (116), Expect = 2e-07
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD----TLWYRIVDGDPNSTFSIGNDKGNVLLARRVDW 166
+ V E + L+ D D + Y + + F I + G++ +R+D
Sbjct: 7 MFVLEEFSGPE-PILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDR 65
Query: 167 ETQAQYTLNISVSD 180
E +A+YTL D
Sbjct: 66 EEKAEYTLTAQAVD 79
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 77.0 bits (190), Expect = 2e-17
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 317 PILTQSLYETNISE--SVPVGSEILKVAASDSDQESKVLYSIH-HAQSPLSAALFRIDFH 373
P+ + + + E P ++++ + + D+E KV YSI +F I+
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKS-NKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 374 SGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
+G L V +PLDRE ++ + L A A + + I V D
Sbjct: 61 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 72.4 bits (178), Expect = 9e-16
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 441 GTNIVQVVATDRDHGENGVVTYSIASGNIG----NVFTMDPILGTIQTARPLDLSLMSEY 496
G +V + + G V YSI VF ++ G ++ PLD ++ Y
Sbjct: 19 GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATY 78
Query: 497 MLLVKATDQGAPPLAATVPVQIIV 520
L A + + + I V
Sbjct: 79 TLFSHAVSSNGNAVEDPMEILITV 102
Score = 45.8 bits (109), Expect = 2e-06
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD---TLWYRI----VDGDPNSTFSIGNDKGNVLLARR 163
+ EN+ F + + D ++Y I D P F I + G + +
Sbjct: 11 ISCPENEKGPF-PKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP 69
Query: 164 VDWETQAQYTLNISVSDG 181
+D E A YTL
Sbjct: 70 LDRERIATYTLFSHAVSS 87
Score = 29.7 bits (67), Expect = 0.91
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 12 EFDLLVRATDHGSPNQSSTARVSIQV 37
+ L A + I V
Sbjct: 77 TYTLFSHAVSSNGNAVEDPMEILITV 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 4e-12
Identities = 87/409 (21%), Positives = 132/409 (32%), Gaps = 136/409 (33%)
Query: 159 LLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHE--SLPRIEF----HV 212
L+ +D E LNI EW PS L S P I H
Sbjct: 198 LIRTTLDAEKVFTQGLNI------LEWL--ENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 213 QVT--DLG------RPRLTSDT------LAKVIVEVTDTNDCPPQFSQDVYNVSILVPTF 258
VT LG R L T + V + TD+ + F V
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE---SFFVSVRKA------- 299
Query: 259 TNVAVLQF-----SQDVYNVSILVPTFTNVAVLQ--LNSGETNCSHQWS----SRIWLHV 307
+ VL F + Y + L P+ +L+ L + E S S ++ +
Sbjct: 300 --ITVL-FFIGVRCYEAYPNTSLPPS-----ILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 308 TVVDVNEHRP----------------ILT---QSLYETNISESVPVGSEILKVAA-SDSD 347
V N H P +++ QSLY N++ + K A S D
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT--------LRKAKAPSGLD 403
Query: 348 QESKVLYS-----IHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGT 402
Q S++ +S + P+++ FHS L A L + L + ++ A+D
Sbjct: 404 Q-SRIPFSERKLKFSNRFLPVASP-----FHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 403 PAKRNFARVSINVLDSNDHPPEFATSLVKG---RVFETSAVGTNIVQVVATDRDHGENGV 459
P V D+ D G RV S + IV + E
Sbjct: 458 P-----------VYDTFD-----------GSDLRVLSGS-ISERIVDCIIRLPVKWETTT 494
Query: 460 ---VTYSI------ASGNIGNVFTMDPILGT---IQTARPLDLSLMSEY 496
T+ + ASG +G + T GT + A LD++ +Y
Sbjct: 495 QFKATHILDFGPGGASG-LGVL-THRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 51.6 bits (123), Expect = 6e-07
Identities = 90/598 (15%), Positives = 168/598 (28%), Gaps = 192/598 (32%)
Query: 44 SKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWEC----LPDESK 99
S P T+ +E LV P ++ L E LP+ ++
Sbjct: 5 STRPLTLSHGS--LEHV------LLV-------PTA--SFFIASQL-QEQFNKILPEPTE 46
Query: 100 NPPTIKSPDQRVEVTENDA--VGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGND--- 154
P E+ +G++ +L++ S + + + + GND
Sbjct: 47 GFAADDEPTTPAELV---GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 155 -------KGNVLLARRVDWET---QAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHES 204
+ + L + + A+ + SA+ V +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--------KKSNSALFRAVGEGNAQ 155
Query: 205 LPRIEFHVQ------VTDL------GRPRLTS--DTLAKVIVE-VTDTNDCPPQFSQDVY 249
L I F Q +L + A+ + E + T D F+Q
Sbjct: 156 LVAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GL 213
Query: 250 NVSILVPTFTNVAVLQFSQDV----YNVSILVPTFTNVAVLQLNSGETNCSHQWSSRIWL 305
N+ + L+ + Y +SI + + + V+QL
Sbjct: 214 NI---------LEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYVVTA---------- 253
Query: 306 HVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSA 365
+ E R L + T S+ + I A +DS + + + ++
Sbjct: 254 KLLGFTPGELRSYL-KGA--TGHSQGLVTAVAI---AETDSWES---FFVS--VRKAITV 302
Query: 366 ALFRIDFHS----GALSVAQPLDRESLSHHLLTIMARDQGTP----AKRNFARVSIN--V 415
LF I S+ + +SL + ++G P + N + + V
Sbjct: 303 -LFFIGVRCYEAYPNTSLPPSILEDSLEN--------NEGVPSPMLSISNLTQEQVQDYV 353
Query: 416 LDSNDHPPE---FATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNV 472
+N H P SLV G +N VV+ G
Sbjct: 354 NKTNSHLPAGKQVEISLVNGA----------------------KNLVVS--------GP- 382
Query: 473 FTMDPILGTIQTARPLDLSLMSEYMLLVKA---TDQGAPP------------LAATVP-- 515
P L ++ + KA DQ P L P
Sbjct: 383 --------------PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 516 -------VQIIVVMADNDPPRFAKAELAAELFENEPPGTVVRHIEARSTSSLVFEIIR 566
+I + F ++ +++ G+ +R + + +V IIR
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVDCIIR 485
Score = 51.2 bits (122), Expect = 8e-07
Identities = 66/392 (16%), Positives = 124/392 (31%), Gaps = 126/392 (32%)
Query: 264 LQFSQDVYNVSILVPTFTNVAVLQLN----------SGETNCSHQWSSRIWL------HV 307
L S +LVPT + QL + + ++ L +V
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 308 T-VVDVNE---HRPILTQSL--YETNISESVPVGSEILKVAAS-DSDQESKVL------- 353
+ +V+ ++ +L L +E E G++I +AA + ++ ++
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLE----GNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 354 -Y--SIHHAQSPL----SAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQGT---- 402
Y + A+ P ++ALFR +V + + L+ I QG
Sbjct: 125 NYITARIMAKRPFDKKSNSALFR--------AVGEG------NAQLVAIFG-GQGNTDDY 169
Query: 403 ------------PAKRNFARVSINVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVAT 450
+ + S L E + + T G NI++ +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLS------ELIRTTLDAEKVFTQ--GLNILEWLEN 221
Query: 451 DRDHGENGVVTYSIASGNIGNVFTMDPILGTIQ------TARPLDLSLMSEYMLLVKATD 504
+ + + S P++G IQ TA+ L + E +++
Sbjct: 222 PSNTPDKDYLLSIPISC---------PLIGVIQLAHYVVTAKLLGFT-PGE----LRSYL 267
Query: 505 QGAPPLAATVPVQIIVVMADNDPPRFAKAELAAE-LFENEPPGTVVRHI-----EARSTS 558
+GA + + + + D+ F A LF I EA +
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF----------FIGVRCYEAYPNT 317
Query: 559 SLVFEIIRGDSDD--------MFSINKGLKKK 582
SL I+ DS + M SI L ++
Sbjct: 318 SLPPSILE-DSLENNEGVPSPMLSI-SNLTQE 347
Score = 40.4 bits (94), Expect = 0.002
Identities = 49/256 (19%), Positives = 76/256 (29%), Gaps = 88/256 (34%)
Query: 243 QFSQ------DVYNVSILVPTFTNV--AVLQFSQDVYNVSILVPTFTN-VAVLQLNSGET 293
Q SQ D+Y S +V +D Y SIL N V + GE
Sbjct: 1624 QGSQEQGMGMDLYKTS---KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 294 NCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESV---PVGSEILKVAAS---DSD 347
RI R + ++ET + + + EI + + S S+
Sbjct: 1681 ------GKRI------------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 348 QESKVLYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMARDQG-TPAKR 406
+ +L + Q P AL + A + + +G PA
Sbjct: 1723 KG--LLSATQFTQ-P---ALT-------LMEKA-----------AFEDL-KSKGLIPADA 1757
Query: 407 NF---------ARVSI-NVLDSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGE 456
F A S+ +V+ +V R G + V D E
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIES-----LVEVVFYR-------GMTMQVAVPRD----E 1801
Query: 457 NGVVTYSIASGNIGNV 472
G Y + + N G V
Sbjct: 1802 LGRSNYGMIAINPGRV 1817
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.4 bits (148), Expect = 6e-10
Identities = 64/453 (14%), Positives = 119/453 (26%), Gaps = 133/453 (29%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFLVA 70
+E D ++ S + S + SK ++ + VE FL++
Sbjct: 49 EEIDHII-----MSKDAVSGTLRLFWTLL----SKQEEMVQ---KFVEEVLRINYKFLMS 96
Query: 71 LIQAS--DPDGDTLWYRIYV--LHWECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALI 126
I+ P T Y L+ + N K R++ L +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLY-------NDNQVFAKYNVSRLQPYLK-----LRQAL 144
Query: 127 QASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEW- 185
P ++DG G+ K + + Y + + I W
Sbjct: 145 LELRPAK----NVLIDGVL------GSGK-TWVAL-----DVCLSYKVQCKMDFKIF-WL 187
Query: 186 -TGR-HRPSAI-RTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPP 242
+ P + + L ++ P + + +L ++ + +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIHSIQAELRRL-------- 237
Query: 243 QFSQDVYNVSILVPTFTNVAVLQFSQDVYNVS----------ILVPTFTNVAVLQLNSGE 292
Y +LV L +V N IL+ T V S
Sbjct: 238 -LKSKPYENCLLV--------LL---NVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAA 284
Query: 293 TNCSHQWSSRIWLHVTVVDVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKV 352
T T + ++ H LT E + + L D +E
Sbjct: 285 T-------------TTHISLDHHSMTLTPD-------EVKSLLLKYLDCRPQDLPREVL- 323
Query: 353 LYSIHHAQSPLSAALFRIDFHSGALSVAQPLDRESLSHHLLTIMA-RDQGTPAKRNFARV 411
+ + P ++ + L T +
Sbjct: 324 --TTN----PRRLSII------AES----------IRDGLATWDNWKHVNCDKLTTIIES 361
Query: 412 SINVLDSNDHPPEFATSLVKGRVFETSAVGTNI 444
S+NVL+ ++ F L VF S +I
Sbjct: 362 SLNVLEPAEYRKMF-DRLS---VFPPS---AHI 387
Score = 41.0 bits (95), Expect = 0.001
Identities = 44/297 (14%), Positives = 90/297 (30%), Gaps = 78/297 (26%)
Query: 33 VSIQVVRLPDESK--NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLW--YRIYV 88
+ + LP E NP +++I S DG W ++ +V
Sbjct: 311 LDCRPQDLPREVLTTNP-------------------RRLSIIAESIRDGLATWDNWK-HV 350
Query: 89 LHW----------ECL-PDESKN--------PPTIKSPDQRVEV-----TENDAVGFLVA 124
L P E + PP+ P + + ++D + +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 125 LIQAS--DPDGDTLWYRIVDGDPNSTFSIGNDKG--NVLLARRVDWETQAQYTLNISVSD 180
L + S + I + N+ ++ +T L D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 181 G-IHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTND 239
+ G H ++ + + + +L R+ F D R K+ + T N
Sbjct: 471 QYFYSHIGHH----LKNIEHPERMTLFRMVF----LDF---RFLE---QKIRHDSTAWNA 516
Query: 240 CPPQFS--QDV--YNVSILV--PTFTNV--AVLQFSQDVYNVSILVPTFTNVAVLQL 288
+ Q + Y I P + + A+L F +++ +T+ +L++
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK-IEENLICSKYTD--LLRI 570
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 43.8 bits (104), Expect = 1e-05
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 364 SAALFRIDFHSGALSVAQPLDRESL-------SHHLLTIMARDQGTPAKRNFARVSINVL 416
+ L +++ SG L + + LDRE L H ++ F + I +
Sbjct: 53 NKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHFQVLLKS------PVQFIQGEIQLQ 106
Query: 417 DSNDHPPEF 425
D NDH PEF
Sbjct: 107 DVNDHAPEF 115
Score = 29.1 bits (66), Expect = 1.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 230 VIVEVTDTNDCPPQFSQDVYNVSI 253
+++ D ND P+F +D S
Sbjct: 101 GEIQLQDVNDHAPEFMEDESGPSS 124
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 34.1 bits (79), Expect = 0.018
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 367 LFRIDFHSGALSVAQPLDRESLSHHLLT------IMARDQGTPAKRNFARVSINVLDSND 420
L ++ +G L V +DRE L ++ V + V D ND
Sbjct: 48 LLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDR-----PLQVFHVEVEVRDIND 102
Query: 421 H 421
+
Sbjct: 103 N 103
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 34.6 bits (80), Expect = 0.071
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 22/109 (20%)
Query: 52 SPDQRVEVTENDAVGFLVALIQASDPDG--DTLWYRIYVLHWECLPDESKNPPTIKSPDQ 109
+Q V + A+ LV L+ + + + LW + + +Q
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALW-ALSNI-------------ASGGNEQ 172
Query: 110 RVEVTENDAVGFLVALIQASDPDG-----DTLWYRIVDGDPNSTFSIGN 153
V + A+ LV L+ + + L I G ++
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQKQAVKE 220
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 33.4 bits (77), Expect = 0.11
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 52 SPDQRVEVTENDAVGFLVALIQASDPDG--DTLWYRIYVLHWECLPDESKNPPTIKSPDQ 109
+Q V + A+ LV L+ + + + LW + + +Q
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALW-ALSNI-------------ASGGNEQ 172
Query: 110 RVEVTENDAVGFLVALIQASDPD 132
+ V E A+ L L +
Sbjct: 173 KQAVKEAGALEKLEQLQSHENEK 195
Score = 28.4 bits (64), Expect = 5.1
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 26/107 (24%)
Query: 49 TIKSPDQRVEVTENDAVGFLVALIQASDPDG-----DTLWYRIYVLHWECLPDESKNPPT 103
+Q V + A+ LV L+ + + L I
Sbjct: 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN-I----------------A 124
Query: 104 IKSPDQRVEVTENDAVGFLVALIQASDPDG--DTLW--YRIVDGDPN 146
+Q V + A+ LV L+ + + + LW I G
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 31.1 bits (71), Expect = 0.20
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 101 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDG---DPNSTFSIGNDKGN 157
++ P VEV + F + + S+PD W G + I D
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEI---ELSEPDVHGQWKL--KGQPLAASPDCEIIEDGKK 59
Query: 158 -VLLARRVDWETQAQYT 173
+L+ + +
Sbjct: 60 HILILHNCQLGMTGEVS 76
Score = 28.0 bits (63), Expect = 2.8
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 47 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYR 85
++ P VEV + F + + S+PD W
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEI---ELSEPDVHGQWKL 40
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade
beta-propeller., struct genomics, PSI-2, protein
structure initiative; 2.00A {Methanococcus maripaludis}
Length = 330
Score = 32.7 bits (75), Expect = 0.33
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 24/118 (20%)
Query: 38 VRLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLW-YRIYVLHWECLPD 96
+ TI + + VT D G L A+ + DG W ++
Sbjct: 93 FDTKKAIVSDFTIF--EDILYVTSMD--GHLYAI----NTDGTEKWRFK--------TKK 136
Query: 97 ESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGND 154
P + S D + V ND +L A+ +PDG W + S SIG D
Sbjct: 137 AIYATPIV-SEDGTIYVGSND--NYLYAI----NPDGTEKWRFKTNDAITSAASIGKD 187
Score = 29.3 bits (66), Expect = 3.2
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 22/104 (21%)
Query: 52 SPDQRVEVTENDAVGFLVALIQASDPDGDTLW-YRIYVLHWECLPDESKNPPTIKSPDQR 110
S D + VT D G L A+ +PDG W ++ ++ P I
Sbjct: 223 SEDGTIYVTSLD--GHLYAI----NPDGTEKWRFK--------TGKRIESSPVI-GNTDT 267
Query: 111 VEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGND 154
+ D G L A+ +PDG W +T I +
Sbjct: 268 IYFGSYD--GHLYAI----NPDGTEKWNFETGSWIIATPVIDEN 305
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.43
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 483 QTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQ 517
Q + L SL Y A D AP LA ++
Sbjct: 20 QALKKLQASL-KLY-----ADDS-APALAIKATME 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 32.4 bits (74), Expect = 0.46
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 51 KSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQR 110
+ + + ++ + LV ++ + L+Y I LH L E +
Sbjct: 89 HHREGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQE----------GAK 136
Query: 111 VEVTENDAVGFLVALIQASDPD 132
+ V + +VAL+ ++
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVK 158
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 30.0 bits (68), Expect = 0.63
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 98 SKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYR-----IVDGDPNSTFSIG 152
S P I +P + +V D V V + S+ +W + + + +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAV---EVSEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 153 NDKGNVLLA-RRVDWETQAQYT 173
D +L V E + +Y
Sbjct: 62 KDGKRHILIFSDVVQEDRGRYQ 83
Score = 28.5 bits (64), Expect = 2.0
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 44 SKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYR 85
S P I +P + +V D V V + S+ +W +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAV---EVSEEGAQVMWMK 43
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 31.8 bits (72), Expect = 0.74
Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 18/108 (16%)
Query: 51 KSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQR 110
+ + + ++ + LV ++ + L+Y I LH + +
Sbjct: 86 HHREGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHNLL----------LHQEGAK 133
Query: 111 VEVTENDAVGFLVALIQASDPDG-----DTLWYRIVDGDPNSTFSIGN 153
+ V + +VAL+ ++ D L + G+ S I
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI-LAYGNQESKLIILA 180
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 31.2 bits (70), Expect = 1.0
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Query: 26 NQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGFL-VALIQASDPDGDTLWY 84
Q SI++ + + P I SP + + + + + P LW+
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264
Query: 85 RI 86
Sbjct: 265 TA 266
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 30.7 bits (69), Expect = 1.3
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 13/130 (10%)
Query: 101 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDG---DPNSTFSIGNDKGN 157
P K V+ ++ F P + W + D + + + +
Sbjct: 3 DPFTKEVVVNVDDDGVISLNFEC---DKMTPKSEFSWSK--DYVSTEDSPRLEVESKGNK 57
Query: 158 -VLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEF----HV 212
+ + + + Y+ +++ +DGI R + P + V
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Query: 213 QVTDLGRPRL 222
++ + G+ R
Sbjct: 118 EILEKGQVRF 127
Score = 28.0 bits (62), Expect = 7.9
Identities = 23/157 (14%), Positives = 39/157 (24%), Gaps = 27/157 (17%)
Query: 43 ESKNPPTIK--------SPDQRVEVTENDAVGFLVAL-----------IQASDPDGDTLW 83
+ R+EV + +D DG
Sbjct: 27 KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASS 86
Query: 84 YRIYVLHWECLP---DESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYR- 139
Y I + L E K P + VE+ E V F + + + +
Sbjct: 87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQ-AEKLSGNAKVNYIFN 145
Query: 140 ---IVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYT 173
I +G N + ++ E + YT
Sbjct: 146 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYT 182
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 28.8 bits (65), Expect = 1.7
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 97 ESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGD---PNSTFSIGN 153
S P + + +EV E A S W + P +S+
Sbjct: 4 GSSGPVRFQEALKDLEVLEGGAATLRC---VLSSVAAPVKWCY--GNNVLRPGDKYSLRQ 58
Query: 154 DKGNVLLA-RRVDWETQAQYT 173
+ + L R + + +Y+
Sbjct: 59 EGAMLELVVRNLRPQDSGRYS 79
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 29.8 bits (66), Expect = 1.7
Identities = 11/112 (9%), Positives = 32/112 (28%), Gaps = 5/112 (4%)
Query: 3 NIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQVVRLPDESKNPPTIKSPDQRVEVTEN 62
+ Q + V+A + ++S + V + PP +++ D +V +
Sbjct: 71 PRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLE----PPMLQALDIGPDVVSH 126
Query: 63 DAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKSPDQRVEVT 114
++ + + + + S + E+
Sbjct: 127 QPGCLWLSWKPWKPSEYMEQECELR-YQPQLKGANWTLVFHLPSSKDQFELC 177
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 30.1 bits (66), Expect = 2.4
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 29 STARVSIQVVRLPDESKNPPTIKSPDQRVEVTENDAVGF----LVALIQASDPD---GDT 81
++A ++IQ +LP + +++ + I P +
Sbjct: 81 NSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNGFLFIHTDKPVYTPDQS 140
Query: 82 LWYRIYVLHWECLPDESKNPPTIKSPDQRV 111
+ R+Y L+ + P + + T P+
Sbjct: 141 VKVRVYSLNDDLKPAKRETVLTFIDPEGSE 170
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 28.1 bits (63), Expect = 2.6
Identities = 14/106 (13%), Positives = 24/106 (22%), Gaps = 21/106 (19%)
Query: 43 ESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPP 102
S ++V E F P W K
Sbjct: 4 GSSGANCFTEELTNLQVEEKGTAVFTCKT---EHPAATVTWR--------------KGLL 46
Query: 103 TIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNST 148
++ + + ++ L I A + D+ Y G S
Sbjct: 47 ELR-ASGKHQPSQEGLTLRLT--ISALEKA-DSDTYTCDIGQAQSR 88
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 28.1 bits (63), Expect = 2.9
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 98 SKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDP---NSTFSIGND 154
S I + +EV E ++ F + +W G +S F
Sbjct: 5 SSGHVGITKRLKTMEVLEGESCSFECV-LSHESASDPAMWTV--GGKTVGSSSRFQATRQ 61
Query: 155 KGNVLLA-RRVDWETQAQYT 173
+L R +
Sbjct: 62 GRKYILVVREAAPSDAGEVV 81
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo
sapiens}
Length = 460
Score = 29.4 bits (65), Expect = 3.1
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 138 YRIVDGDPNSTFSIGNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTG----RHRPSA 193
R ++G S G L RV W + + IS ++ +H + R
Sbjct: 145 VREMNGVLKGMLSEWFSSG-FLNLERVTWHSPCEVLQKISEAEAVHPVKNWMDMKRRVGP 203
Query: 194 IRTVVNLDHESLPR---IEFHVQVTD 216
R H S P + HV +T
Sbjct: 204 YRRCYFFSHCSTPGEPLVVLHVALTG 229
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET:
LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A*
1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Length = 160
Score = 28.8 bits (64), Expect = 3.3
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 434 VFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPILGTIQTARPLDLSLM 493
+ G N+ ++V+ R H +V ++I G + + +
Sbjct: 78 TYVADYEGQNVFKIVSLSRTH----LVAHNINVDKHGQTTELTELFVKGLNVED---EDL 130
Query: 494 SEYMLLVKATDQGAPPLAATVPVQIIVVMADND 526
++ L + D+G + +V +N+
Sbjct: 131 EKFWKLTE--DKGIDK-------KNVVNFLENE 154
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 27.7 bits (62), Expect = 4.3
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 41 PDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYR 85
S + + V + F + SD WY+
Sbjct: 2 SSGSSGQLEVLQDIADLTVKAAEQAVFKC---EVSDEKVTGKWYK 43
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 27.3 bits (61), Expect = 4.5
Identities = 12/102 (11%), Positives = 27/102 (26%), Gaps = 19/102 (18%)
Query: 47 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKS 106
+ + + V + S+ D + W++ I
Sbjct: 7 GIMVTKQLEDTTAYCGERVELEC---EVSEDDANVKWFK-------------NGEEIIPG 50
Query: 107 PDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNST 148
P R + L+ I+ + D Y ++ S+
Sbjct: 51 PKSRYRIRVEGKKHILI--IEGATKA-DAAEYSVMTTGGQSS 89
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 27.3 bits (61), Expect = 5.0
Identities = 10/82 (12%), Positives = 19/82 (23%), Gaps = 10/82 (12%)
Query: 96 DESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDP---NSTFSIG 152
S P + E +E L W + + +S+
Sbjct: 3 SGSSGPARFTQDLKTKEASEGATATLQCEL----SKVAPVEWKK--GPETLRDGGRYSLK 56
Query: 153 NDKGNVLLA-RRVDWETQAQYT 173
D L + +Y+
Sbjct: 57 QDGTRCELQIHDLSVADAGEYS 78
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE CIT PEG; 1.35A
{Bacteroides caccae}
Length = 276
Score = 28.3 bits (62), Expect = 6.4
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 13/123 (10%)
Query: 39 RLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDES 98
P + PD V ++ + + G+ L + E +
Sbjct: 72 AAPAGCEMQTARILPDGNALVAWCGHPSTILEV----NMKGEVLSKTEFETGIERPHAQF 127
Query: 99 KNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNV 158
+ K + V + V + P+G L + G P S+ + N G+
Sbjct: 128 RQINKNKKGNYLVPLFATSEVREI-------APNGQLLNSVKLSGTPFSSAFLDN--GDC 178
Query: 159 LLA 161
L+A
Sbjct: 179 LVA 181
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 26.5 bits (59), Expect = 8.4
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 5/45 (11%)
Query: 101 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDP 145
P I P + V + V + S W + D
Sbjct: 8 PAAIIKPLEDQWVAPGEDVELRC---ELSRAGTPVHWLK--DRKA 47
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 28.1 bits (63), Expect = 8.4
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 505 QGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFEN 542
G PP + PVQ + + D+ PP+ + + + +
Sbjct: 236 DGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRD 273
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 28.0 bits (63), Expect = 9.0
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 505 QGAPPLAATVPVQIIVVMADNDPPRFAKAELAAELFEN 542
+G PP P++ + ++A N P E + +F +
Sbjct: 211 EGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRD 248
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 27.5 bits (60), Expect = 9.5
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 236 DTNDCPPQFSQDVYNVSI 253
+ C F +DVY+ +
Sbjct: 28 EIALCKTGFPEDVYSAVL 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,786,193
Number of extensions: 539117
Number of successful extensions: 1874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 267
Length of query: 582
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 483
Effective length of database: 3,937,614
Effective search space: 1901867562
Effective search space used: 1901867562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.9 bits)