RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7562
(582 letters)
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 65.8 bits (159), Expect = 7e-14
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 420 DHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMDPIL 479
+ P F ++ + V E + G I+ +VA D D + ++Y I + T++
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFI-GNDPARWLTVNKDN 59
Query: 480 GTIQTARPLD----LSLMSEYMLLVKATDQGAPPLAATVPVQIIV 520
G + LD + Y +++ TD G T + + V
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHV 104
Score = 63.1 bits (152), Expect = 7e-13
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 315 HRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDFHS 374
P ++ ++SE + G +I+ + A D D++ S P A ++ +
Sbjct: 2 EAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDP--ARWLTVNKDN 59
Query: 375 GALSVAQPLDRESL----SHHLLTIMARDQGTPAKRNFARVSINVLD 417
G ++ LDRES + + + ++ D G + ++VLD
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106
Score = 45.4 bits (106), Expect = 1e-06
Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 36/139 (25%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGD--TLWYRIVDGDPNSTFSIGNDKGN 157
P RV+V+E+ + G + + A DPD + DP ++ D G
Sbjct: 2 EAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGI 61
Query: 158 VLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDL 217
V +D E++ + + VTD
Sbjct: 62 VTGNGNLDRESE--------------------------------YVKNNTYTVIMLVTDD 89
Query: 218 GRPRLTSDTLAKVIVEVTD 236
G T +I+ V D
Sbjct: 90 GVSVGTGT--GTLILHVLD 106
Score = 30.7 bits (68), Expect = 0.13
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 7 FVAGQEFDLLVRATDHGSPNQSSTARVSIQV 37
+V + +++ TD G + T + + V
Sbjct: 74 YVKNNTYTVIMLVTDDGVSVGTGTGTLILHV 104
Score = 28.4 bits (62), Expect = 0.84
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 525 NDPPRFAKAELAAELFENEPPGTVVRHIEARS----TSSLVFEIIRGDSDDMFSINK 577
N+ P F A ++ E+ G + + A+ + I D ++NK
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNK 57
Score = 28.4 bits (62), Expect = 0.92
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 46 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPD 78
P RV+V+E+ + G + + A DPD
Sbjct: 2 EAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPD 34
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 62.8 bits (152), Expect = 6e-13
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 441 GTNIVQVVATDRDHGENGVVTYSIASGNIG----NVFTMDPILGTIQTARPLDLSLMSEY 496
G +V + + G V YSI VF ++ G ++ PLD ++ Y
Sbjct: 18 GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATY 77
Query: 497 MLLVKATDQGAPPLAATVPVQIIVV 521
L A + + + I V
Sbjct: 78 TLFSHAVSSNGNAVEDPMEILITVT 102
Score = 54.7 bits (131), Expect = 4e-10
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 317 PILTQSLYETNISESVPVGSEILKVAA--SDSDQESKVLYSIH-HAQSPLSAALFRIDFH 373
P+ + + + E+ G + S+ D+E KV YSI +F I+
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 374 SGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
+G L V +PLDRE ++ + L A A + + I V D
Sbjct: 60 TGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
Score = 37.0 bits (85), Expect = 8e-04
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 111 VEVTENDAVGFLVALIQ--ASDPDGDTLWYRIV----DGDPNSTFSIGNDKGNVLLARRV 164
+ EN+ F L+Q ++ ++Y I D P F I + G + + +
Sbjct: 10 ISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPL 69
Query: 165 DWETQAQYTLNISVSDG 181
D E A YTL
Sbjct: 70 DRERIATYTLFSHAVSS 86
Score = 27.8 bits (61), Expect = 1.5
Identities = 3/22 (13%), Positives = 4/22 (18%)
Query: 17 VRATDHGSPNQSSTARVSIQVV 38
A + I V
Sbjct: 81 SHAVSSNGNAVEDPMEILITVT 102
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 62.5 bits (151), Expect = 9e-13
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 441 GTNIVQVVATDRDHGENGVVTYSIASGNIG----NVFTMDPILGTIQTARPLDLSLMSEY 496
G ++V + V YSI VF ++ G + RPLD +Y
Sbjct: 15 GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKY 74
Query: 497 MLLVKATDQGAPPLAATVPVQIIVV 521
+L A + P+ + + I V+
Sbjct: 75 VLSSHAVSENGSPVEEPMEITINVI 99
Score = 52.5 bits (125), Expect = 2e-09
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 327 NISESVPVGSEILKVAA--SDSDQESKVLYSIH-HAQSPLSAALFRIDFHSGALSVAQPL 383
+SE+ G ++ S+ D+ +KV YSI +FRI++ +G + V +PL
Sbjct: 8 KVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 384 DRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
DRE ++L+ A + ++INV+D
Sbjct: 67 DREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 39.4 bits (91), Expect = 1e-04
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 111 VEVTENDAVGFLVAL--IQASDPDGDTLWYRIVDGD----PNSTFSIGNDKGNVLLARRV 164
++V+EN+ F L I+++ + ++Y I P F I + G +L+ R +
Sbjct: 7 IKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPL 66
Query: 165 DWETQAQYTLNISVSDG 181
D E +Y L+
Sbjct: 67 DREEYDKYVLSSHAVSE 83
Score = 28.2 bits (62), Expect = 0.98
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVV 38
++ L A ++I V+
Sbjct: 72 DKYVLSSHAVSENGSPVEEPMEITINVI 99
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 62.8 bits (151), Expect = 9e-13
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHG---ENGVVTYSIASG----NIGN 471
ND+ P+F + +G V E GT ++ V ATD D NGV++YSI I N
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 472 VFTMDPILGTI-QTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVV 521
+FT++ G I LD EY L V+ATD L+ I +
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQIT 112
Score = 62.0 bits (149), Expect = 2e-12
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSI------HHAQSPLSAA 366
N++RP TQ ++ ++ E V G++++ V+A+D D L +
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPN 61
Query: 367 LFRIDFHSGALS-VAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
LF I+ +G +S + LDRE + LT+ A D + I + D
Sbjct: 62 LFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 42.0 bits (97), Expect = 2e-05
Identities = 27/140 (19%), Positives = 46/140 (32%), Gaps = 27/140 (19%)
Query: 97 ESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKG 156
++ N P R V E G V + A+D D ++G + + + +
Sbjct: 1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDD---NIDSLNGVLSYSILKQDPEE 57
Query: 157 NVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTD 216
+ ++ ET + LD E P VQ TD
Sbjct: 58 PIPNLFTINRETGVISLIGT----------------------GLDREKFPEYTLTVQATD 95
Query: 217 LGRPRLTSDTLAKVIVEVTD 236
L L+ + K I+++TD
Sbjct: 96 LEGAGLSVE--GKAIIQITD 113
Score = 35.0 bits (79), Expect = 0.005
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVV 38
E+ L V+ATD S + IQ+
Sbjct: 85 PEYTLTVQATDLEGAGLSVEGKAIIQIT 112
Score = 30.0 bits (66), Expect = 0.24
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 525 ND-PPRFAKAELAAELFENEPPGTVVRHIEA 554
ND P+F + + E PGT V + A
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSA 32
Score = 29.6 bits (65), Expect = 0.37
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 238 NDCPPQFSQDVYNVSIL--VPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGETNC 295
ND P+F+QDV+ S+ V T V + + + N+ L + L
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYS---ILKQDPEEP 58
Query: 296 SHQWSSRIWLHVTVVDVNEHRPILTQSLYETNI 328
+ + + Y +
Sbjct: 59 IPNLFTINRETGVISLIGTGLDREKFPEYTLTV 91
Score = 29.6 bits (65), Expect = 0.41
Identities = 12/68 (17%), Positives = 24/68 (35%)
Query: 43 ESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPP 102
++ N P R V E G V + A+D D + + + D + P
Sbjct: 1 QNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 60
Query: 103 TIKSPDQR 110
+ + ++
Sbjct: 61 NLFTINRE 68
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 61.8 bits (149), Expect = 1e-12
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 441 GTNIVQVVATDRDHGENGVVTYSI----ASGNIGNVFTMDPILGTIQTARPLDLSLMSEY 496
G ++V +N + YS+ A +F ++PI G + +PLD L++ +
Sbjct: 17 GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARF 76
Query: 497 MLLVKATDQGAPPLAATVPVQIIVV 521
L A D + + + I V+
Sbjct: 77 HLRAHAVDINGNQVENPIDIVINVI 101
Score = 50.2 bits (119), Expect = 2e-08
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 327 NISESVPVGSEILKVAASDSD--QESKVLYSIHHAQSPLSAA-LFRIDFHSGALSVAQPL 383
N+ E+ G ++ S + + YS+ + +F I+ SG LSV +PL
Sbjct: 10 NLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 384 DRESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
DRE ++ L A D N + INV+D
Sbjct: 69 DRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 30.2 bits (67), Expect = 0.21
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 46/133 (34%)
Query: 111 VEVTENDAVGFLVALIQASDPDGD---TLWYRI----VDGDPNSTFSIGNDKGNVLLARR 163
+ + EN F + D +L Y + D P F I G + + +
Sbjct: 9 INLPENSRGPF-PQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP 67
Query: 164 VDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGRPRLT 223
+D E A++ L D+ ++
Sbjct: 68 LDRELIARFHL------------------------------------RAHAVDINGNQVE 91
Query: 224 SDTLAKVIVEVTD 236
+ +++ V D
Sbjct: 92 NP--IDIVINVID 102
Score = 29.4 bits (65), Expect = 0.35
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 11 QEFDLLVRATDHGSPNQSSTARVSIQVV 38
F L A D + + I V+
Sbjct: 74 ARFHLRAHAVDINGNQVENPIDIVINVI 101
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 59.7 bits (143), Expect = 1e-11
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHG---ENGVVTYSIASGNIG----N 471
ND+ PEF + +G V E + GT++++V ATD D N + Y+I S + N
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 472 VFTMDPILGTIQTARPLDLSL-MSEYMLLVKATDQGAPPLAATVPVQIIV 520
+FT++ G I Y L+V+A D L+ T I V
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 110
Score = 58.6 bits (140), Expect = 3e-11
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAAS-----DSDQESKVLYSIHHAQSPLSAA- 366
N++RP TQ ++E +++E G+ ++KV+A+ + + + Y+I L
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 367 LFRIDFHSGALSVAQPLD-RESLSHHLLTIMARDQGTPAKRNFARVSINVLD 417
+F ++ +G +SV RES + L + A D A+ I V D
Sbjct: 61 MFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
Score = 38.9 bits (89), Expect = 2e-04
Identities = 29/137 (21%), Positives = 40/137 (29%), Gaps = 27/137 (19%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVL 159
N P V E G V + A+D D D Y + T + +
Sbjct: 3 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTY---NAAIAYTIVSQDPELPHK 59
Query: 160 LARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVTDLGR 219
V+ +T L LD ES P VQ DL
Sbjct: 60 NMFTVNRDTGVISVLTS----------------------GLDRESYPTYTLVVQAADLQG 97
Query: 220 PRLTSDTLAKVIVEVTD 236
L++ AK ++ V D
Sbjct: 98 EGLSTT--AKAVITVKD 112
Score = 32.0 bits (71), Expect = 0.047
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 1 MENIIVFVAGQEFDLLVRATDHGSPNQSSTARVSIQV 37
+ + + + + L+V+A D S+TA+ I V
Sbjct: 74 LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 110
Score = 30.1 bits (66), Expect = 0.26
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 525 ND-PPRFAKAELAAELFENEPPGTVVRHIEA 554
ND P F + + E PGT V + A
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSA 31
Score = 28.9 bits (63), Expect = 0.63
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 238 NDCPPQFSQDVYNVSI 253
ND P+F+Q+V+ S+
Sbjct: 1 NDNRPEFTQEVFEGSV 16
Score = 28.2 bits (61), Expect = 1.1
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 46 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWY---RIYVLHWECLPDESKNPP 102
N P V E G V + A+D D D Y Y + + KN
Sbjct: 3 NRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMF 62
Query: 103 TIKSPDQRVEVTEN----DAVGFLVALIQASDPDGDTL 136
T+ + V + ++ ++QA+D G+ L
Sbjct: 63 TVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGL 100
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 57.4 bits (137), Expect = 8e-11
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHG--ENGVVTYSIASGNIG----NV 472
ND+ PEF + G V E S GT ++ V A D D NG++ Y I S N+
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 473 FTMDPILGTIQT-ARPLDLSLMSEYMLLVKATDQGAPP---LAATVPVQIIV 520
FT++ G I T A LD + +Y L+++ATD P L+ T I V
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 112
Score = 53.6 bits (127), Expect = 1e-09
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAASDSDQES-----KVLYSIHHAQSPLSAAL 367
N++RP ++ ++ E G+ ++ V A D+D + + A S S +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 368 FRIDFHSGALSV-AQPLDRESLSHHLLTIMARDQGTPAKRNF---ARVSINVLD 417
F I+ +G + A LDRE + + L I A D A I V D
Sbjct: 61 FTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 43.2 bits (100), Expect = 7e-06
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 10/112 (8%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRI---------VDGDPNSTFS 150
N P V E G V + A D D + + F+
Sbjct: 3 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFT 62
Query: 151 IGNDKGNVLLARRVDW-ETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLD 201
I N+ G+++ E QYTL I +D T +A + D
Sbjct: 63 INNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
Score = 30.8 bits (68), Expect = 0.15
Identities = 9/45 (20%), Positives = 11/45 (24%)
Query: 46 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLH 90
N P V E G V + A D D +
Sbjct: 3 NRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 47
Score = 30.1 bits (66), Expect = 0.26
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 525 ND-PPRFAKAELAAELFENEPPGTVVRHIEA-----------RSTSSLVFEIIRGDSDDM 572
ND P F + E PGT V + A +V + S +M
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNM 60
Query: 573 FSIN 576
F+IN
Sbjct: 61 FTIN 64
Score = 28.5 bits (62), Expect = 1.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 238 NDCPPQFSQDVYNVSI 253
ND P+F V+N S+
Sbjct: 1 NDNRPEFLHQVWNGSV 16
Score = 27.0 bits (58), Expect = 2.9
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 11 QEFDLLVRATDHGSPNQ---SSTARVSIQV 37
Q++ L+++ATD S+TA I V
Sbjct: 83 QQYTLIIQATDMEGNPTYGLSNTATAVITV 112
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 57.7 bits (138), Expect = 9e-11
Identities = 21/137 (15%), Positives = 48/137 (35%), Gaps = 10/137 (7%)
Query: 311 DVNEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRI 370
++ + + +Y + + V G +L V S+ +++ KV Y
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPA-------DFK 57
Query: 371 DFHSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPPEFATSLV 430
G + + + L I A+D+ T ++ V+++ + P +
Sbjct: 58 VDEDGTVYAVRSFPLTAEQAKFL-IYAQDKETQ-EKWQVAVNLSREPTLTEEPMKEPHEI 115
Query: 431 KGRVF-ETSAVGTNIVQ 446
+ VF A + +Q
Sbjct: 116 EEIVFPRQLAKHSGALQ 132
Score = 45.4 bits (106), Expect = 2e-06
Identities = 14/128 (10%), Positives = 34/128 (26%), Gaps = 23/128 (17%)
Query: 236 DTNDCPPQFSQDVYNVSIL--VPTFTNVAVLQFSQDVYNVSILVPTFTNVAVLQLNSGE- 292
+ C F +DVY+ + V + ++FS + + G
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTV 64
Query: 293 -------------------TNCSHQWSSRIWLHVTVVDVNEHRPI-LTQSLYETNISESV 332
+ Q ++ ++++ P+ + E +
Sbjct: 65 YAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEIEEIVFPRQL 124
Query: 333 PVGSEILK 340
S L+
Sbjct: 125 AKHSGALQ 132
Score = 42.7 bits (99), Expect = 2e-05
Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 7/112 (6%)
Query: 417 DSNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRDHGENGVVTYSIASGNIGNVFTMD 476
+ F + + + G ++ V ++ + + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR------KRKVQYESSEPADFKV 58
Query: 477 PILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDPP 528
GT+ R L+ + L+ A D+ +P
Sbjct: 59 DEDGTVYAVRSFPLT-AEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPM 109
Score = 31.9 bits (71), Expect = 0.095
Identities = 12/138 (8%), Positives = 35/138 (25%), Gaps = 6/138 (4%)
Query: 92 ECLPDESKNPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSI 151
E + + + ++ G + ++ S+ + ++
Sbjct: 1 EASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRK---RKVQYESSEPADFK 57
Query: 152 GNDKGNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFH 211
++ G V R + Q I D E + + + + E +
Sbjct: 58 VDEDGTVYAVRSFPLTAE-QAKFLIYAQD--KETQEKWQVAVNLSREPTLTEEPMKEPHE 114
Query: 212 VQVTDLGRPRLTSDTLAK 229
++ R +
Sbjct: 115 IEEIVFPRQLAKHSGALQ 132
Score = 28.0 bits (61), Expect = 1.8
Identities = 4/35 (11%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 524 DND-PPRFAKAELAAELFENEPPGTVVRHIEARST 557
F + +A L ++ G + +++ +
Sbjct: 6 IALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNC 40
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 57.3 bits (137), Expect = 9e-11
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDF 372
N++ PI Y + E+ +G E+ +++ +D D + + F I
Sbjct: 2 NDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 60
Query: 373 HSGA----LSVAQPLDRESLSHHLLTIMARDQ---GTPAKRNFARVSINVLD 417
+ L+ A+ LD E ++L I + P + A V++ V D
Sbjct: 61 DPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
Score = 55.0 bits (131), Expect = 5e-10
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 418 SNDHPPEFATSLVKGRVFETSAVGTNIVQVVATDR-DHGENGVVTYSIASGNIGNVFTMD 476
+ND+ P F V E + +G + ++ TD G N G F +
Sbjct: 1 ANDNAPIFDPKTYTALVPE-NEIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT 59
Query: 477 PILGT----IQTARPLDLSLMSEYMLLVKATDQ---GAPPLAATVPVQIIV 520
+ + TA+ LD L +Y+L + + P +T V + V
Sbjct: 60 TDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTV 110
Score = 43.5 bits (101), Expect = 6e-06
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 100 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDT----LWYRIVDGDPNSTFSIGNDK 155
N P V EN +GF V + +D D + + F+I D
Sbjct: 4 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDP 62
Query: 156 GN----VLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLD 201
+ + A+ +D+E + QY L I+V + +A TV D
Sbjct: 63 ESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
Score = 31.9 bits (71), Expect = 0.055
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 46 NPPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWEC 93
N P V EN +GF V + +D D V
Sbjct: 4 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV 50
Score = 29.2 bits (64), Expect = 0.58
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 11 QEFDLLVRATD---HGSPNQSSTARVSIQV 37
+++ L + + P +STA V++ V
Sbjct: 81 KQYVLQITVENAEPFSVPLPTSTATVTVTV 110
Score = 28.0 bits (61), Expect = 1.3
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 238 NDCPPQFSQDVYNVSI 253
ND P F Y +
Sbjct: 2 NDNAPIFDPKTYTALV 17
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 41.2 bits (95), Expect = 3e-05
Identities = 11/111 (9%), Positives = 27/111 (24%), Gaps = 7/111 (6%)
Query: 313 NEHRPILTQSLYETNISESVPVGSEILKVAASDSDQESKVLYSIHHAQSPLSAALFRIDF 372
N++ P+ + ++ P + SD+D
Sbjct: 1 NDNGPVPSPRVFTMCDQNPEPQ-----VLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 373 HSGALSVAQPLDRESLSHHLLTIMARDQGTPAKRNFARVSINVLDSNDHPP 423
G + P + + + ++ D + V+ V
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAI 104
Score = 37.4 bits (85), Expect = 7e-04
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 419 NDHPPEFATSLVKGRVFETSAVGTNIVQVVATDRD-HGENGVVTYSIASGNIGNVFTMDP 477
ND+ P + + + + + + +D D S++ G+
Sbjct: 1 NDNGPVPSPRVFT--MCDQNPEP---QVLTISDADIPPNTYPYKVSLSHGSDLTWKAELD 55
Query: 478 ILGTIQTARPLDLSLMSEYMLLVKATDQGAPPLAATVPVQIIVVMADNDP 527
GT P +Y + V +D P V +
Sbjct: 56 SKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSC-EGKAI 104
Score = 27.0 bits (58), Expect = 2.7
Identities = 11/100 (11%), Positives = 22/100 (22%), Gaps = 5/100 (5%)
Query: 145 PNSTFSIGNDKGNVLLARRVDWETQA-QYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHE 203
T N + VL D Y +++S + +
Sbjct: 10 RVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQL 69
Query: 204 SLPRIEFHVQVTDLGRPRLTSDTLAKVIVEVTDTNDCPPQ 243
+V ++D + V V +
Sbjct: 70 KKGDYSIYVLLSDAQNNPQLT----VVNATVCSCEGKAIK 105
Score = 27.0 bits (58), Expect = 3.1
Identities = 9/92 (9%), Positives = 22/92 (23%), Gaps = 6/92 (6%)
Query: 238 NDCPPQFSQDVYNVSILVPTFTNVAVL------QFSQDVYNVSILVPTFTNVAVLQLNSG 291
ND P S V+ + P + + ++S + +
Sbjct: 1 NDNGPVPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTS 60
Query: 292 ETNCSHQWSSRIWLHVTVVDVNEHRPILTQSL 323
Q + + V+ + +
Sbjct: 61 MLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVV 92
>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 290
Score = 30.2 bits (67), Expect = 0.72
Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 18/155 (11%)
Query: 105 KSPDQRVEVTENDAVGFLVAL---IQASDPDGDTLWYRIVD------GDPNSTFSIGNDK 155
KS Q V V ++ G ++ L IQ ++ D I +P IG
Sbjct: 32 KSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGG-- 89
Query: 156 GNVLLARRVDWETQAQYTLNISVSDGIHEWTGRHRPSAIRTVVNLDHESLPRIEFHVQVT 215
G+ + R V + + + + + + P PR+ +
Sbjct: 90 GDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPD------VAIGYEDPRVNLVIGDG 143
Query: 216 DLGRPRLTSDTLAKVIVEVTDTNDCPPQ-FSQDVY 249
+ VIV+ +D + F + +
Sbjct: 144 VAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFF 178
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 27.3 bits (59), Expect = 2.1
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 47 PPTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIYVLHWECLPDESKNPPTIKS 106
PP +K+ + E + LV ++ P D WY+I + L + S++ + S
Sbjct: 2 PPRVKAVKSSEHINEGETA-MLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60
Query: 107 PDQRVEVTENDA 118
R E+ +
Sbjct: 61 SQGRSELHIENL 72
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
protein, N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 106
Score = 27.2 bits (60), Expect = 2.4
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 100 NPPTIKSP---DQRVEVTENDAVGFLVALIQASDPDGDTLWYR--IVDGDPNSTFSIGN 153
NP +P D +E E + L ALIQ + D + R + ++
Sbjct: 11 NPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNG 69
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 25.6 bits (55), Expect = 6.7
Identities = 17/87 (19%), Positives = 24/87 (27%)
Query: 102 PTIKSPDQRVEVTENDAVGFLVALIQASDPDGDTLWYRIVDGDPNSTFSIGNDKGNVLLA 161
P EV E + F +I +S P N L
Sbjct: 2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61
Query: 162 RRVDWETQAQYTLNISVSDGIHEWTGR 188
RV + + +YT+ S G E
Sbjct: 62 NRVKGDDKGEYTVRAKNSYGTKEEIVF 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,071,578
Number of extensions: 94767
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 64
Length of query: 582
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,171,896
Effective search space: 576572832
Effective search space used: 576572832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)