BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7563
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 89 NRKLIYSITG-GNSREQFAVDFNTGSITVVDELDFETVQE---YTLTVRATDSVSGHSAE 144
+R++ Y++ G F + +G + + ELDFE +++ Y+L V AT+ G S
Sbjct: 248 DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS 307
Query: 145 VFVSVRVTDVNDCPPEFP-QDWYNVSISEAAPFGTLILKVRALDNDSG 191
V +++RVTDVND P+F D+ ++ E P GT IL+V+A+D+DSG
Sbjct: 308 VDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSG 355
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 8/136 (5%)
Query: 67 SITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSI-TVVDELDFETV 125
SI G + A D + +Y + KL+YSI G + F+++ T I T + +D E
Sbjct: 119 SILGTSVTNVTATDADDPVYGNSAKLVYSILEG--QPYFSIEPETAIIKTALPNMDREAK 176
Query: 126 QEYTLTVRATDSVSGHSAEV----FVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLIL 181
+EY + ++A D + GHS + ++V +TDVND PP+F Q Y+ S+ E GT I
Sbjct: 177 EEYLVVIQAKD-MGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIG 235
Query: 182 KVRALDNDSGKQKISS 197
+V+A D D G+ SS
Sbjct: 236 RVKANDQDIGENAQSS 251
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 6/130 (4%)
Query: 81 FNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSG 140
+T L ++K+ Y ++G + F ++ TG I + LD E EYTLT +A D +
Sbjct: 24 LHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN 83
Query: 141 HSAEV---FVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISS 197
E F+ ++V D+ND PEF Y+ ++ E + GT + V A D D +
Sbjct: 84 KPLEPPSEFI-IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADD--PVYGN 140
Query: 198 TAQIAHSFLE 207
+A++ +S LE
Sbjct: 141 SAKLVYSILE 150
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A DS +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHA-DSSNGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 93
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 94 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 151
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 152 IVSQDPELPHKNMFTVNR 169
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 93
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 94 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 151
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 152 IVSQDPELPHKNMFTVNR 169
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 34 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 92
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 93 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 150
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 151 IVSQDPELPHKNMFTVNR 168
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 32 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 90
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 91 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 148
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 149 IVSQDPELPHKNMFTVNR 166
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 92 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 150 IVSQDPELPHKNMFTVNR 167
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF 146
K+ YSITG + + F ++ TG + V LD E + +Y L A S A+
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPM 92
Query: 147 -VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSF 205
+ + VTD ND PEF Q+ + S++E A GT ++KV A D D + A IA++
Sbjct: 93 EIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN--TYNAAIAYTI 150
Query: 206 LEIFFLSLHRYMFTIGK 222
+ H+ MFT+ +
Sbjct: 151 VSQDPELPHKNMFTVNR 167
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF-- 146
N L++ ++G + FAV+ +TG + + LD ET E+T+ SVS H +
Sbjct: 40 NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEF----SVSDHQGVITRK 95
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSG 191
V+++V DVND P F Y+V I E P GT I V A D D G
Sbjct: 96 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG 140
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 28/121 (23%)
Query: 16 EVSVNVKVIDKSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSRE 75
+V++ V ++ + P F Q YSV + E+ + +P+ + A P + G S
Sbjct: 95 KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI-FIVNATDP-------DLGAGGSV- 145
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRAT 135
LYS + FA+D G +TV+ ELD+E Q Y LTV AT
Sbjct: 146 ---------LYSFQPPSPF----------FAIDSARGIVTVIQELDYEVTQAYQLTVNAT 186
Query: 136 D 136
D
Sbjct: 187 D 187
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF-- 146
N L++ ++G + FAV+ +TG + + LD ET E+T+ SVS H +
Sbjct: 39 NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEF----SVSDHQGVITRK 94
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSG 191
V+++V DVND P F Y+V I E P GT I V A D D G
Sbjct: 95 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG 139
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 30/144 (20%)
Query: 16 EVSVNVKVIDKSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSRE 75
+V++ V ++ + P F Q YSV + E+ + +P+ + A P + G S
Sbjct: 94 KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI-FIVNATDP-------DLGAGGSV- 144
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRAT 135
LYS + FA+D G +TV+ ELD+E Q Y LTV AT
Sbjct: 145 ---------LYSFQPPSPF----------FAIDSARGIVTVIQELDYEVTQAYQLTVNAT 185
Query: 136 DSVSGHSAEVF--VSVRVTDVNDC 157
D +++ +TD+ D
Sbjct: 186 DQDKTRPLSTLANLAIIITDMQDM 209
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF-- 146
N L++ + G + FAV+ +TG + + LD ET E+T+ SVS H +
Sbjct: 40 NDPLVFGVPGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEF----SVSDHQGVITRK 95
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSG 191
V+++V DVND P F Y+V I E P GT I V A D D G
Sbjct: 96 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG 140
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 28/121 (23%)
Query: 16 EVSVNVKVIDKSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSRE 75
+V++ V ++ + P F Q YSV + E+ + +P+ + A P + G S
Sbjct: 95 KVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPI-FIVNATDP-------DLGAGGSV- 145
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRAT 135
LYS + FA+D G +TV+ ELD+E Q Y LTV AT
Sbjct: 146 ---------LYSFQPPSPF----------FAIDSARGIVTVIQELDYEVTQAYQLTVNAT 186
Query: 136 D 136
D
Sbjct: 187 D 187
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 6/130 (4%)
Query: 81 FNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSG 140
++ + S + + Y ++G + F +D +G+I LD E +YTL +A D +
Sbjct: 25 LHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 141 HSAEV---FVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISS 197
E F+ V+V D+ND PPEF + Y+ ++ E + GT +++V A D D +
Sbjct: 85 RPLEPPSEFI-VKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADD--PTYGN 141
Query: 198 TAQIAHSFLE 207
+A++ +S LE
Sbjct: 142 SAKLVYSILE 151
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + F ++ TG + V + LD E + YTL A S +G++ E
Sbjct: 33 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSS-NGNAVEDP 91
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHS 204
+ + + VTD ND PEF Q+ + S+ E A GT +++V A D D + A IA++
Sbjct: 92 MEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVN--TYNAAIAYT 149
Query: 205 FLEIFFLSLHRYMFTIGK 222
L + MFTI +
Sbjct: 150 ILSQDPELPDKNMFTINR 167
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 92 LIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE---VFVS 148
L Y ++G + + F ++ NTG I LD E Y L +A + +G E F+
Sbjct: 35 LKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFI- 93
Query: 149 VRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLE 207
+++ D+ND P F +D Y ++ E A GT +++V A D D ++A++ +S L+
Sbjct: 94 IKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADD--PTYGNSAKVVYSILQ 150
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF-- 146
N L++ ++G + FAV+ +TG + + LD ET E+T+ SVS H +
Sbjct: 40 NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEF----SVSDHQGVITRK 95
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSG 191
V+++V VND P F Y+V I E P GT I V A D D G
Sbjct: 96 VNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG 140
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 28/121 (23%)
Query: 16 EVSVNVKVIDKSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSRE 75
+V++ V ++ + P F Q YSV + E+ + +P+ + A P + G S
Sbjct: 95 KVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPI-FIVNATDP-------DLGAGGSV- 145
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRAT 135
LYS + FA+D G +TV+ ELD+E Q Y LTV AT
Sbjct: 146 ---------LYSFQPPSPF----------FAIDSARGIVTVIQELDYEVTQAYQLTVNAT 186
Query: 136 D 136
D
Sbjct: 187 D 187
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + + F ++ TG + V LD E + +Y L A S +G + E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSS-NGEAVEDP 93
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
+ + + VTD ND PEF Q+ + S++E A GT ++KV A D D
Sbjct: 94 MEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 100 NSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE--VFVSVRVTDVNDC 157
+ + F ++ NTGS++V LD ET+ Y L V TD+ SG + E V + V V D ND
Sbjct: 46 DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDA-SGKTLEGPVPLEVIVIDQNDN 104
Query: 158 PPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
P F + Y + E +P GT ++++ A D D
Sbjct: 105 RPIFREGPYIGHVMEGSPTGTTVMRMTAFDAD 136
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE---V 145
N+ +Y I G ++ F V G I + LD E EY LT D + S E
Sbjct: 30 NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSK 89
Query: 146 FVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
F+ ++V+D+ND P F Q +N S+ E + GT + KV A D D
Sbjct: 90 FI-IKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDAD 132
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 89 NRKLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE 144
N L YS+TG + + F ++ +G ++V LD E + + L A D ++G+ E
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVD-INGNQVE 89
Query: 145 --VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
+ + + V D+ND PEF +N S+ E + GT ++ V A+D D
Sbjct: 90 NPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 101 SREQFAVDFNTGSI-TVVDELDFETVQEYTLTVRATD 136
S F ++ TG I TV LD E VQ+YTL ++ATD
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 89 NRKLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE 144
N L YS+TG + + F ++ +G ++V LD E + + L A D ++G+ E
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVD-INGNQVE 89
Query: 145 --VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
+ + + V D+ND PEF +N S+ E + GT ++ V A+D D
Sbjct: 90 NPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 101 SREQFAVDFNTGSI-TVVDELDFETVQEYTLTVRATD 136
S F ++ TG I TV LD E VQ+YTL ++ATD
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 89 NRKLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE 144
N L YS+TG + + F ++ +G ++V LD E + + L A D ++G+ E
Sbjct: 31 NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVD-INGNQVE 89
Query: 145 --VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
+ + + V D+ND PEF +N S+ E + GT ++ V A+D D
Sbjct: 90 NPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD 136
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 101 SREQFAVDFNTGSI-TVVDELDFETVQEYTLTVRATD----SVSGHSAEVFVSVRVTDVN 155
S F ++ TG I TV LD E VQ+YTL ++ATD G S + VTDVN
Sbjct: 158 SPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVN 217
Query: 156 DCPPEF 161
D PPEF
Sbjct: 218 DNPPEF 223
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 94 YSITGGNSREQFAV----DFNTGSITVVDELDFETVQEYTLTVRATDSVS-----GHSAE 144
Y I+GG+ +FA+ + N G +TVV +DFET + + LTV A + V H +
Sbjct: 261 YRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQ 320
Query: 145 --VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQK 194
VSV V DVN+ P F + + E GT++ + A D D Q+
Sbjct: 321 STATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQ 371
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 1 MPSSILSSGIQPCSTEVSVNVKVIDKS--MPVFDKQFYSVSVREDIQIHSPLPLTIRAES 58
+ S +S P + + + VID++ P F + + SVRE +Q
Sbjct: 231 LSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQ------------- 277
Query: 59 PLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQ----FAVDFNTGSI 114
P + + S A D + + SLN L YSI + E F ++ TG I
Sbjct: 278 PGTQVMAVS----------ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVI 327
Query: 115 TVVDE-LDFETVQEYTLTVRATD-SVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISE 172
+++ LD E EYTLTV+ATD +G S E +++TD ND P F Y + E
Sbjct: 328 SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 387
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + F +++ TG + V LD E +Y L+ A S +G E
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV-SENGSPVEEP 246
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
+ +++ V D ND P+F QD + S+ E GT ++ V A D D
Sbjct: 247 MEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 291
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 31/180 (17%)
Query: 1 MPSSILSSGIQPCSTEVSVNVKVIDKS--MPVFDKQFYSVSVREDIQIHSPLPLTIRAES 58
+ S +S P + + + VID++ P F + + SVRE +Q
Sbjct: 82 LSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQ------------- 128
Query: 59 PLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQ----FAVDFNTGSI 114
P + + S A D + + SLN L YSI + E F ++ TG I
Sbjct: 129 PGTQVMAVS----------ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVI 178
Query: 115 TVVDE-LDFETVQEYTLTVRATD-SVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISE 172
+++ LD E EYTLTV+ATD +G S E +++TD ND P F Y + E
Sbjct: 179 SLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 238
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + F +++ TG + V LD E +Y L+ A S +G E
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV-SENGSPVEEP 97
Query: 145 VFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
+ +++ V D ND P+F QD + S+ E GT ++ V A D D
Sbjct: 98 MEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED 142
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 105 FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGH--SAEVFVSVRVTDVNDCPPEFP 162
F ++ +G ++V LD E + Y L V TD +SG V + + V D ND P F
Sbjct: 50 FRINEISGDVSVTRPLDREAIANYQLEVEVTD-LSGKIIDGPVRLDISVIDQNDNRPMFK 108
Query: 163 QDWYNVSISEAAPFGTLILKVRALDND 189
+ Y + E +P GT ++++ A D D
Sbjct: 109 EGPYVGHVMEGSPTGTTVMRMTAFDAD 135
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 89 NRKLIYSITG-GNSREQFAVDFNTGSITVVDELDFETVQE---YTLTVRATDSVSGHSAE 144
+R++ Y++ G F + +G + + ELDFE +++ Y+L V AT+ G S
Sbjct: 243 DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS 302
Query: 145 VFVSVRVTDVND 156
V +++RVTDVND
Sbjct: 303 VDLTIRVTDVND 314
>pdb|1ZXK|A Chain A, Crystal Structure Of Cadherin8 Ec1 Domain
pdb|1ZXK|B Chain B, Crystal Structure Of Cadherin8 Ec1 Domain
Length = 98
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 81 FNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATD 136
+T L ++K+ Y ++G + F ++ TG I + LD E EYTLT +A D
Sbjct: 24 LHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD 79
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 105 FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE--VFVSVRVTDVNDCPP 159
F ++ NTGS++V LD E + Y L V TD V+G + E V + V V D ND P
Sbjct: 50 FRINENTGSVSVTRTLDREVIAVYQLFVETTD-VNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 100 NSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVFVSVRV 151
+ + F ++ NTGS++V LD ET+ Y L V TD+ SG + E V + V
Sbjct: 46 DPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDA-SGKTLEGPVPLEV 96
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ YSITG + F ++ TG + V + LD E + YTL A S +G++ E
Sbjct: 37 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSS-NGNAVEDP 95
Query: 145 VFVSVRVTDVND 156
+ + + VTD ND
Sbjct: 96 MEILITVTDQND 107
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 155 NDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQ---KISSTAQIAHSFLEIFFL 211
ND P F + V I E AP GT ++++ A D D G + AQ+A + +F L
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 212 SLHRYMFTIGKGFFPERELLQ 232
+ + T+ + E +
Sbjct: 68 NNTTGLITVQRSLDREETAIH 88
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 101 SREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVFVSVRVTDVN 155
++ FA++ TG ITV LD E + +TV A+D S A V++ VTDVN
Sbjct: 61 TKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDG-SSTPARATVTINVTDVN 114
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE-- 144
K+ Y TG E F + +TG + V LD E + LT A D+ G++ E
Sbjct: 45 KITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDA-RGNNVEKP 103
Query: 145 VFVSVRVTDVNDCPPEFPQD 164
+ + ++V D+ND P F QD
Sbjct: 104 LELRIKVLDINDNEPVFTQD 123
>pdb|1ZVN|A Chain A, Crystal Structure Of Chick Mn-Cadherin Ec1
pdb|1ZVN|B Chain B, Crystal Structure Of Chick Mn-Cadherin Ec1
Length = 99
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 94 YSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAE 144
Y ++G + F +D TG I + LD E +YTL +A D +G E
Sbjct: 38 YILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPME 88
>pdb|2OHW|A Chain A, Crystal Structure Of The Yuei Protein From Bacillus
Subtilis
pdb|2OHW|B Chain B, Crystal Structure Of The Yuei Protein From Bacillus
Subtilis
Length = 133
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 43 DIQIHSPLPLTIRAESPLNRKLIY 66
D+Q H+PL + I A+ +NR+LIY
Sbjct: 97 DLQFHTPLGIVIAADIAVNRELIY 120
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF 146
K+ YSITG + F ++ TG + V + LD E + YTL A S +G++ E
Sbjct: 37 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSS-NGNAVEDP 95
Query: 147 VSVRVT 152
+ + +T
Sbjct: 96 MEILIT 101
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF 146
K+ YSITG + F ++ TG + V + LD E + YTL A S +G++ E
Sbjct: 34 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSS-NGNAVEDP 92
Query: 147 VSVRVT 152
+ + +T
Sbjct: 93 MEILIT 98
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 91 KLIYSITGGNSREQ----FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF 146
K+ YSITG + F ++ TG + V + LD E + YTL A S +G++ E
Sbjct: 34 KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSS-NGNAVEDP 92
Query: 147 VSVRVT 152
+ + +T
Sbjct: 93 MEILIT 98
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATD 136
N L++ ++G + FAV+ +TG + + LD ET E+T+ +D
Sbjct: 40 NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD 87
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 105 FAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVFVSVRV 151
F ++ N+G ++V LD E + Y L V TD +G + E V + +
Sbjct: 50 FKINENSGEVSVTKALDREAIPSYQLQVETTDE-NGKTIEGPVDLEI 95
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAH 203
V + V D ND P F + Y +++E P GT I + DN + QI +
Sbjct: 113 VRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEY 169
>pdb|4AGT|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AGT|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AHA|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHA|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHB|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 39 SVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYS 87
+V + ++ SP+ T + L +Y++T GN+ ++FA D TG Y+
Sbjct: 51 NVIGNAKLGSPVAATSKE---LKHIRVYTLTEGNTLQEFAYDSGTGWYN 96
>pdb|4AHB|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose.
pdb|4AHB|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 39 SVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYS 87
+V + ++ SP+ T + L +Y++T GN+ ++FA D TG Y+
Sbjct: 51 NVIGNAKLGSPVAATSKE---LKHIRVYTLTEGNTLQEFAYDSGTGWYN 96
>pdb|4AH4|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH4|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH5|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide.
pdb|4AH5|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide
Length = 315
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 39 SVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYS 87
+V + ++ SP+ T + L +Y++T GN+ ++FA D TG Y+
Sbjct: 51 NVIGNAKLGSPVAATSKE---LKHIRVYTLTEGNTLQEFAYDSGTGWYN 96
>pdb|4AGI|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AHB|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 39 SVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYS 87
+V + ++ SP+ T + L +Y++T GN+ ++FA D TG Y+
Sbjct: 51 NVIGNAKLGSPVAATSKE---LKHIRVYTLTEGNTLQEFAYDSGTGWYN 96
>pdb|1YEM|A Chain A, Conserved Hypothetical Protein Pfu-838710-001 From
Pyrococcus Furiosus
pdb|1YEM|B Chain B, Conserved Hypothetical Protein Pfu-838710-001 From
Pyrococcus Furiosus
Length = 179
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 13 CSTEVSVNVKVID--KSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIY---- 66
E+ +K+ D ++ F+ +F +ED+ P P +R N K Y
Sbjct: 9 SEVEIKFKIKLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRPKLLRIRGVHNLKKYYLTFK 68
Query: 67 SITGGNSREQFAVDFNTGLY----SLNRKLIYSITGGNSREQFAVDFNTGSITV 116
I N+ E + V+F G + + ++L + I ++++ N ++ V
Sbjct: 69 EILDENNEEFYEVEFEIGDFEKAVEVFKRLGFKIQATIKKKRWVYKLNGVTLEV 122
>pdb|2A4C|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1
pdb|2A4C|B Chain B, Crystal Structure Of Mouse Cadherin-11 Ec1
Length = 99
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 94 YSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATD 136
Y ++G + F +D +G+I LD E +YTL +A D
Sbjct: 38 YILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD 80
>pdb|2JZH|A Chain A, Structure Of Iib Domain Of The Mannose Transporter Of E.
Coli
Length = 173
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 84 GLYSLNRKLIYSITGGNSREQFAVDFNTGSITVV-DELDFETVQEYTLTVRATDSVSGHS 142
GL ++ +LI+ G ++ + N I VV DE+ +TV++ LT A V+ H
Sbjct: 15 GLARIDDRLIH----GQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHV 70
Query: 143 AEVFVSVRV 151
+V +RV
Sbjct: 71 VDVAKMIRV 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,559,696
Number of Sequences: 62578
Number of extensions: 304952
Number of successful extensions: 613
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 95
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)