RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7563
(274 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 127 bits (322), Expect = 2e-36
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 33/165 (20%)
Query: 29 PVFDKQFY--SVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLY 86
P F F+ + + ED + S + + A D
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSV-TQLLARDM--------------------D------ 38
Query: 87 SLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVF 146
N L++ ++G + FAV+ +TG + + LD ET E+T+ +D
Sbjct: 39 --NDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSD--HQGVITRK 94
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSG 191
V+++V DVND P F Y+V I E P GT I V A D D G
Sbjct: 95 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG 139
Score = 87.3 bits (217), Expect = 6e-21
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 32/147 (21%)
Query: 14 STEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGG 71
VN++V D + P F Q YSV + E+ + +P I+ +
Sbjct: 90 VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTP---------------IFIVN-- 132
Query: 72 NSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLT 131
A D + G ++YS + FA+D G +TV+ ELD+E Q Y LT
Sbjct: 133 ------ATDPDLGA---GGSVLYSFQPPS--PFFAIDSARGIVTVIQELDYEVTQAYQLT 181
Query: 132 VRATD--SVSGHSAEVFVSVRVTDVND 156
V ATD S +++ +TD+ D
Sbjct: 182 VNATDQDKTRPLSTLANLAIIITDMQD 208
Score = 48.0 bits (115), Expect = 7e-07
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 155 NDCPPEFPQDWYN--VSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEI 208
+ P F +++ + ISE P G+ + ++ A D D+ + + A F +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAV 57
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 122 bits (308), Expect = 3e-34
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 28/187 (14%)
Query: 36 YSVSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIY 94
++S E+ + P L I++ K+ YSITG +
Sbjct: 5 AAISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGA--------------------- 43
Query: 95 SITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTD 153
F ++ TG + V LD E + +Y L A S + + + VTD
Sbjct: 44 ---DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTD 100
Query: 154 VNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSL 213
ND PEF Q+ + S++E A GT ++KV A D D + A IA++ +
Sbjct: 101 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN--AAIAYTIVSQDPELP 158
Query: 214 HRYMFTI 220
H+ MFT+
Sbjct: 159 HKNMFTV 165
Score = 83.9 bits (208), Expect = 1e-19
Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 31/154 (20%)
Query: 8 SGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
S + + + + V D+ + P F ++ + SV E + + + +
Sbjct: 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSV-MKVS---------- 131
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGN----SREQFAVDFNTGSITVV-DEL 120
A D + + + N + Y+I + + F V+ +TG I+V+ L
Sbjct: 132 ------------ATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGL 179
Query: 121 DFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTD 153
D E+ YTL V+A D G S + V D
Sbjct: 180 DRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 126 bits (319), Expect = 2e-33
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 6 LSSGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRK 63
+S P + + + VID+ + P F + + SVRE +Q + + + + A
Sbjct: 87 VSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQV-MAVSA------- 138
Query: 64 LIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGN----SREQFAVDFNTGSITVVDE 119
D + + SLN L YSI + F ++ TG I+++
Sbjct: 139 ---------------TDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 183
Query: 120 -LDFETVQEYTLTVRATDSVS-GHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFG 177
LD E EYTLTV+ATD G S E +++TD ND P F Y + E G
Sbjct: 184 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-G 242
Query: 178 TLILKVRALDNDSG 191
+ ++ D D
Sbjct: 243 FEVQRLSVTDLDMP 256
Score = 116 bits (292), Expect = 1e-29
Identities = 40/199 (20%), Positives = 69/199 (34%), Gaps = 38/199 (19%)
Query: 9 GIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESP----LNR 62
S E +++ D + P+FD + Y+ V E+ +I + +
Sbjct: 203 EGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEV-QRLSVTDLDMPGTPA 260
Query: 63 KLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDF 122
N F + + + N G +T LDF
Sbjct: 261 WQAVYKIRVNEGGFFNITTDP------------------------ESNQGILTTAKGLDF 296
Query: 123 ETVQEYTLTVRATDSVSGH----SAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGT 178
E ++Y L + ++ ++ V+V V DVN+ P F V +SE G
Sbjct: 297 ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGE 355
Query: 179 LILKVRALDNDSGK-QKIS 196
I+ + A D D + QK+S
Sbjct: 356 KIISLVAQDPDKQQIQKLS 374
Score = 108 bits (272), Expect = 4e-27
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 28/193 (14%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
+ VS E L + I++ K+ YSITG +
Sbjct: 6 HDWVIPPIKVSENERGPFPKRL-VQIKSNKDRFNKVYYSITGQGA--------------- 49
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFV 147
+ F +++ TG + V LD E +Y L+ A S + +
Sbjct: 50 ---------DNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEI 100
Query: 148 SVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLE 207
++ V D ND P+F QD + S+ E GT ++ V A D D ++ +++S L+
Sbjct: 101 TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLN--GVLSYSILK 158
Query: 208 IFFLSLHRYMFTI 220
+FTI
Sbjct: 159 QDPEEPIPNLFTI 171
Score = 97.0 bits (242), Expect = 6e-23
Identities = 40/186 (21%), Positives = 60/186 (32%), Gaps = 38/186 (20%)
Query: 12 PCSTEVSVNVKVID-KSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITG 70
++ +V V V D P F V V ED+ I S+
Sbjct: 318 LPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGE---------------KIISLV- 361
Query: 71 GNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQE--- 127
A D + +KL Y I +R V+ + G +T LD E+
Sbjct: 362 -------AQDPDKQQ---IQKLSYFIGNDPAR-WLTVNKDNGIVTGNGNLDRESEYVKNN 410
Query: 128 -YTLTVRATDS-VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRA 185
YT+ + TD VS + + + V DVND P + + P +
Sbjct: 411 TYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP-----QVLTI 465
Query: 186 LDNDSG 191
D D
Sbjct: 466 SDADIP 471
Score = 53.9 bits (130), Expect = 2e-08
Identities = 17/151 (11%), Positives = 46/151 (30%), Gaps = 33/151 (21%)
Query: 8 SGIQPCSTEVSVNVKVIDKS--MPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
G+ + ++ + V+D + PV + +++ + P P +
Sbjct: 421 DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN------PEPQVLTI--------- 465
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETV 125
D + + S++ G+ A + G+ ++
Sbjct: 466 -------------SDADIPPNTY--PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK 510
Query: 126 QEYTLTVRATDSVSGHSAEVFVSVRVTDVND 156
+Y++ V +D+ + V+ V
Sbjct: 511 GDYSIYVLLSDA-QNNPQLTVVNATVCSCEG 540
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 127 bits (320), Expect = 3e-33
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 6 LSSGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRK 63
+S P + + + VID+ + P F + + SVRE +Q +
Sbjct: 236 VSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT--------------- 280
Query: 64 LIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGN----SREQFAVDFNTGSITVVDE 119
+ +++ A D + + SLN L YSI + F ++ TG I+++
Sbjct: 281 QVMAVS--------ATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGT 332
Query: 120 -LDFETVQEYTLTVRATDSVS-GHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFG 177
LD E EYTLTV+ATD G S E +++TD ND P F Y + E G
Sbjct: 333 GLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEI-G 391
Query: 178 TLILKVRALDNDSG 191
+ ++ D D
Sbjct: 392 FEVQRLSVTDLDMP 405
Score = 115 bits (290), Expect = 2e-29
Identities = 40/199 (20%), Positives = 69/199 (34%), Gaps = 38/199 (19%)
Query: 9 GIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESP----LNR 62
S E +++ D + P+FD + Y+ V E+ +I + +
Sbjct: 352 EGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEV-QRLSVTDLDMPGTPA 409
Query: 63 KLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDF 122
N F + + + N G +T LDF
Sbjct: 410 WQAVYKIRVNEGGFFNITTDP------------------------ESNQGILTTAKGLDF 445
Query: 123 ETVQEYTLTVRATDSVSGH----SAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGT 178
E ++Y L + ++ ++ V+V V DVN+ P F V +SE G
Sbjct: 446 ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGE 504
Query: 179 LILKVRALDNDSGK-QKIS 196
I+ + A D D + QK+S
Sbjct: 505 KIISLVAQDPDKQQIQKLS 523
Score = 114 bits (286), Expect = 1e-28
Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 33/220 (15%)
Query: 8 SGIQPCSTEVSVNVKVIDKSMPVFDKQFYS-----VSVREDIQIHSPLPLT-IRAESPLN 61
SG + S + V ++ ++ + V E+ + P L I++
Sbjct: 127 SGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRF 186
Query: 62 RKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELD 121
K+ YSITG + + F +++ TG + V LD
Sbjct: 187 NKVYYSITGQGA------------------------DNPPQGVFRIEWETGWMLVTRPLD 222
Query: 122 FETVQEYTLTVRATDS-VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLI 180
E +Y L+ A S + +++ V D ND P+F QD + S+ E GT +
Sbjct: 223 REEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQV 282
Query: 181 LKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLHRYMFTI 220
+ V A D D ++ +++S L+ +FTI
Sbjct: 283 MAVSATDEDDNIDSLN--GVLSYSILKQDPEEPIPNLFTI 320
Score = 96.5 bits (240), Expect = 9e-23
Identities = 40/189 (21%), Positives = 61/189 (32%), Gaps = 38/189 (20%)
Query: 9 GIQPCSTEVSVNVKVID-KSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYS 67
+ ++ +V V V D P F V V ED+ I S
Sbjct: 464 SVPLPTSTATVTVTVEDVNEAPFFVPAVSRVDVSEDLSRGE---------------KIIS 508
Query: 68 ITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQE 127
+ A D + +KL Y I +R V+ + G +T LD E+
Sbjct: 509 LV--------AQDPDKQQ---IQKLSYFIGNDPAR-WLTVNKDNGIVTGNGNLDRESEYV 556
Query: 128 ----YTLTVRATDS-VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILK 182
YT+ + TD VS + + + V DVND P + + P
Sbjct: 557 KNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEP-----QV 611
Query: 183 VRALDNDSG 191
+ D D
Sbjct: 612 LTISDADIP 620
Score = 61.0 bits (148), Expect = 1e-10
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 134 ATDSVSGH-SAEVFVSVRVTDVNDCPPEFPQDWYNVSISE-AAPFGTLILKVRALDNDSG 191
A+ + G V DV+ C P F Y S++ G + KV D +
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTR 68
Query: 192 KQKISSTAQ 200
K +
Sbjct: 69 KHGLYDVGD 77
Score = 59.1 bits (143), Expect = 4e-10
Identities = 18/178 (10%), Positives = 52/178 (29%), Gaps = 35/178 (19%)
Query: 8 SGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
G+ + ++ + V+D + PV + +++ + P P +
Sbjct: 570 DGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQN------PEPQVLTI--------- 614
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETV 125
D + + S++ G+ A + G+ ++
Sbjct: 615 -------------SDADIPPNTY--PYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK 659
Query: 126 QEYTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISE--AAPFGTLIL 181
+Y++ V +D+ + V+ V + + G+++
Sbjct: 660 GDYSIYVLLSDA-QNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLPIILVILGSVLA 716
Score = 57.2 bits (138), Expect = 2e-09
Identities = 25/185 (13%), Positives = 47/185 (25%), Gaps = 33/185 (17%)
Query: 19 VNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPL-NRKLIYSITGGNSRE 75
V D P F Y SV + + +Y +
Sbjct: 23 VPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGDSR--- 79
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDF-ETVQEYTLTVRA 134
F V + + V + + + D + V +
Sbjct: 80 -FRVLPDGTVLVK----------------RHVKLHKDTKFTISTWDARGIKHSTNIAVAS 122
Query: 135 TDSVSGHSAEVF-VSVRVTDVNDCPPEFPQ---DW----YNVSISEAAPFGTLILKVRAL 186
SG A + V + + DW VS +E PF ++++++
Sbjct: 123 KRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKS- 181
Query: 187 DNDSG 191
+ D
Sbjct: 182 NKDRF 186
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 125 bits (316), Expect = 6e-33
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 32/194 (16%)
Query: 6 LSSGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRK 63
+SS + + + + V D+ + P F ++ + SV E + + + + A
Sbjct: 81 VSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSV-MKVSA------- 132
Query: 64 LIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGN----SREQFAVDFNTGSITVVDE 119
D + + + N + Y+I + + F V+ +TG I+V+
Sbjct: 133 ---------------TDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTS 177
Query: 120 -LDFETVQEYTLTVRATDSVS-GHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFG 177
LD E+ YTL V+A D G S + V D+ND P F Y + E
Sbjct: 178 GLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV-N 236
Query: 178 TLILKVRALDNDSG 191
I ++ D+D+
Sbjct: 237 ARIATLKVTDDDAP 250
Score = 114 bits (288), Expect = 3e-29
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 40/200 (20%)
Query: 9 GIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAE---SPLNR- 62
+ ST + V D + PVF+ Y V E+ ++++ + T++ +P
Sbjct: 197 QGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPEN-EVNARI-ATLKVTDDDAPNTPA 254
Query: 63 -KLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELD 121
K +Y++ +QF V + N G + LD
Sbjct: 255 WKAVYTVVNDP-DQQFVVVTDP------------------------TTNDGILKTAKGLD 289
Query: 122 FETVQEYTLTVRATD----SVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFG 177
FE Q+Y L VR + S + V+V V DVN+ P F V + E G
Sbjct: 290 FEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVG 348
Query: 178 TLILKVRALDNDSGK-QKIS 196
I A + D+ QKI+
Sbjct: 349 QEITSYTAREPDTFMDQKIT 368
Score = 112 bits (282), Expect = 2e-28
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 28/187 (14%)
Query: 36 YSVSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIY 94
+S E+ + P L I++ K+ YSITG
Sbjct: 5 PPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQG---------------------- 42
Query: 95 SITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTD 153
F ++ TG + V LD E + +Y L A S + + + VTD
Sbjct: 43 --ADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTD 100
Query: 154 VNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSL 213
ND PEF Q+ + S++E A GT ++KV A D D + A IA++ +
Sbjct: 101 QNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN--AAIAYTIVSQDPELP 158
Query: 214 HRYMFTI 220
H+ MFT+
Sbjct: 159 HKNMFTV 165
Score = 99.3 bits (248), Expect = 9e-24
Identities = 40/216 (18%), Positives = 68/216 (31%), Gaps = 39/216 (18%)
Query: 12 PCSTEVSVNVKVID-KSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITG 70
+ +V V V+D P+F V V ED + I S T
Sbjct: 312 LVPSTATVTVDVVDVNEAPIFMPAERRVEVPEDFGVGQ---------------EITSYT- 355
Query: 71 GNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQE--- 127
A + +T + ++K+ Y I + ++ TG+I E+D E +
Sbjct: 356 -------AREPDTFM---DQKITYRIWRDTAN-WLEINPETGAIFTRAEMDREDAEHVKN 404
Query: 128 --YTLTVRATDS-VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVR 184
Y + ATD + + + + DVND P P +
Sbjct: 405 STYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQP-----HIIT 459
Query: 185 ALDNDSGKQKISSTAQIAHSFLEIFFLSLHRYMFTI 220
LD D TA++ H + + +
Sbjct: 460 ILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQES 495
Score = 58.9 bits (143), Expect = 4e-10
Identities = 17/162 (10%), Positives = 42/162 (25%), Gaps = 34/162 (20%)
Query: 8 SGIQPCSTEVSVNVKVIDKS--MPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
G + ++ + ++D + P+ + + R P P I
Sbjct: 416 DGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRN------PQPHIITI--------- 460
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSRE-QFAVDFNTGSITVVDELDFET 124
+D + + +T G S + ++
Sbjct: 461 -------------LDPDLPPNTS--PFTAELTHGASVNWTIEYNDAAQESLILQPRKDLE 505
Query: 125 VQEYTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFPQDWY 166
+ EY + ++ D+ + V V D + +
Sbjct: 506 IGEYKIHLKLADN-QNKDQVTTLDVHVCDCEGTVNNCMKAHH 546
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 117 bits (295), Expect = 2e-32
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSG--HSAEVF 146
N+ +Y I G ++ F V G I + LD E EY LT D +
Sbjct: 30 NKNAMYIIEGESANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSK 89
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFL 206
++V+D+ND P F Q +N S+ E + GT + KV A D D A + + +
Sbjct: 90 FIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGH--ATVTYQII 147
Query: 207 E 207
+
Sbjct: 148 K 148
Score = 87.0 bits (216), Expect = 5e-21
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 29/151 (19%)
Query: 7 SSGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKL 64
+ +KV D + P+F ++ ++ SV E ++ + + +
Sbjct: 78 RRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV-TKVT--------- 127
Query: 65 IYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFET 124
A D + + + + Y I GN E F VD + T +LD E+
Sbjct: 128 -------------AEDADDPTVAGHATVTYQIIKGN--EYFTVDDSGVIFTARADLDRES 172
Query: 125 VQEYTLTVRATDS--VSGHSAEVFVSVRVTD 153
Y + V+A D+ ++G S+ V +R+TD
Sbjct: 173 QSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 123 bits (312), Expect = 2e-32
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 38/198 (19%)
Query: 6 LSSGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRA-----ES 58
+ + + + VID + P F Q ++ SV E + + + +T+ A +
Sbjct: 81 VDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV-MTVTAIDADDPN 139
Query: 59 PLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSI-TVV 117
LN L Y I S F ++ TG I TV
Sbjct: 140 ALNGMLRYRILSQAPST------------------------PSPNMFTINNETGDIITVA 175
Query: 118 DELDFETVQEYTLTVRATD----SVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEA 173
LD E VQ+YTL ++ATD G S + VTDVND PPEF + + E
Sbjct: 176 AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPEN 235
Query: 174 APFGTLILKVRALDNDSG 191
++ + D D
Sbjct: 236 RV-DVIVANLTVTDKDQP 252
Score = 115 bits (290), Expect = 2e-29
Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 42/198 (21%)
Query: 14 STEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESP-----LNRKLIY 66
S + + V D + P F + V E+ ++ + + Y
Sbjct: 204 SNTATAVITVTDVNDNPPEFTAMTFYGEVPEN-RVDVIV-ANLTVTDKDQPHTPAWNAAY 261
Query: 67 SITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQ 126
I+GG+ +FA+ + + N G +TVV +DFET +
Sbjct: 262 RISGGDPTGRFAILTDP------------------------NSNDGLVTVVKPIDFETNR 297
Query: 127 EYTLTVRATDSV-------SGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTL 179
+ LTV A + V + VSV V DVN+ P F + + E GT+
Sbjct: 298 MFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTM 356
Query: 180 ILKVRALDNDSGK-QKIS 196
+ + A D D Q I
Sbjct: 357 LTTLTAQDPDRYMQQNIR 374
Score = 109 bits (275), Expect = 2e-27
Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 29/185 (15%)
Query: 38 VSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSI 96
+++ E+ + P L IR++ N L YS+TG
Sbjct: 7 INLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPG------------------------ 42
Query: 97 TGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTDVN 155
F ++ +G ++V LD E + + L A D + + + + V D+N
Sbjct: 43 ADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMN 102
Query: 156 DCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLHR 215
D PEF +N S+ E + GT ++ V A+D D + + + L +
Sbjct: 103 DNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPN---ALNGMLRYRILSQAPSTPSP 159
Query: 216 YMFTI 220
MFTI
Sbjct: 160 NMFTI 164
Score = 96.6 bits (241), Expect = 8e-23
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 37/191 (19%)
Query: 7 SSGIQPCSTEVSVNVKVID-KSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
P + +V+V VID P F + E + + ++
Sbjct: 313 KGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQEEGLHAGT---------------ML 357
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETV 125
++T A D + + + + Y+ + +D G IT + LD E+
Sbjct: 358 TTLT--------AQDPDRYM---QQNIRYTKLSDPAN-WLKIDPVNGQITTIAVLDRESP 405
Query: 126 QE----YTLTVRATDS-VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLI 180
Y T A+D+ + S + + + D+ND P+ E ++
Sbjct: 406 NVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNSIN 463
Query: 181 LKVRALDNDSG 191
+ ALD D
Sbjct: 464 --ITALDYDID 472
Score = 59.7 bits (145), Expect = 2e-10
Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 31/165 (18%)
Query: 8 SGIQPCSTEVSVNVKVIDKS--MPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
+GI P S ++ + ++D + P E + P + I A
Sbjct: 421 NGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPE---PNSINITA--------- 466
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSI-TVVDELDFET 124
+D++ + ++ + + ++ G + ++ F
Sbjct: 467 -------------LDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLE 513
Query: 125 VQEYTLTVRATDS-VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNV 168
Y + + TDS S + V+V + ++
Sbjct: 514 AGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 120 bits (302), Expect = 3e-32
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 7 SSGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKL 64
+P +KV D + P F Y +V E + +
Sbjct: 80 FETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGT---------------S 124
Query: 65 IYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSI-TVVDELDFE 123
+ ++T A D + +Y + KL+YSI G F+++ T I T + +D E
Sbjct: 125 VTNVT--------ATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAIIKTALPNMDRE 174
Query: 124 TVQEYTLTVRATD---SVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLI 180
+EY + ++A D G S ++V +TDVND PP+F Q Y+ S+ E GT I
Sbjct: 175 AKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI 234
Query: 181 LKVRALDNDSGKQKISSTAQIAHSFLE 207
+V+A D D G AQ ++ ++
Sbjct: 235 GRVKANDQDIG-----ENAQSSYDIID 256
Score = 110 bits (278), Expect = 6e-29
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGH--SAEVF 146
++K+ Y ++G + F ++ TG I + LD E EYTLT +A D +
Sbjct: 32 SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSE 91
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFL 206
++V D+ND PEF Y+ ++ E + GT + V A D D S A++ +S L
Sbjct: 92 FIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNS--AKLVYSIL 149
Query: 207 E 207
E
Sbjct: 150 E 150
Score = 75.8 bits (187), Expect = 4e-16
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 38/151 (25%)
Query: 14 STEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAE---SPLNRKLIYSI 68
S ++ V + D + P F + Y SV ED+ + + + ++A N + Y I
Sbjct: 196 SGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAI-GRVKANDQDIGENAQSSYDI 254
Query: 69 TGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEY 128
G+ F + + G I + LDFET + Y
Sbjct: 255 IDGDGTALFEITSD------------------------AQAQDGVIRLRKPLDFETKKSY 290
Query: 129 TLTVRATDSVSGH--------SAEVFVSVRV 151
TL V A + V + V
Sbjct: 291 TLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 26.9 bits (60), Expect = 7.8
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 159 PEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKIS 196
+ Q + E + +++ D D G +KI
Sbjct: 2 WVWNQM---FVLEEFSGPEPILVGRLHTDLDPGSKKIK 36
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 116 bits (293), Expect = 5e-32
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRAT 135
+ D ++G + + Y ++G + F +D +G+I LD E +YTL +A
Sbjct: 24 RLHSDIDSG----DGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAV 79
Query: 136 DSVSGH--SAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQ 193
D + V+V D+ND PPEF + Y+ ++ E + GT +++V A D D
Sbjct: 80 DRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTY 139
Query: 194 KISSTAQIAHSFLE 207
S A++ +S LE
Sbjct: 140 GNS--AKLVYSILE 151
Score = 93.9 bits (234), Expect = 2e-23
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 31/156 (19%)
Query: 11 QPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSI 68
+P VKV D + P F + Y +V E + + + + + A
Sbjct: 85 RPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSV-IQVTA------------ 131
Query: 69 TGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSI-TVVDELDFETVQE 127
D + Y + KL+YSI G F+V+ TG I T + +D E +E
Sbjct: 132 ----------SDADDPTYGNSAKLVYSILEGQ--PYFSVEAQTGIIRTALPNMDREAKEE 179
Query: 128 YTLTVRATDS---VSGHSAEVFVSVRVTDVNDCPPE 160
Y + ++A D + G S V++ +TD +
Sbjct: 180 YHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
Score = 26.5 bits (59), Expect = 7.6
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 166 YNVSISEAAPFGTLILKVRALDNDSGKQKIS 196
I E +++ D DSG I
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDIDSGDGNIK 37
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 115 bits (291), Expect = 7e-32
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRAT 135
+ D + G + L Y ++G + + F ++ NTG I LD E Y L +A
Sbjct: 23 KLHSDQDRG----DGSLKYILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQAV 78
Query: 136 DSVSGH--SAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQ 193
+ +G E +++ D+ND P F +D Y ++ E A GT +++V A D D
Sbjct: 79 NRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTY 138
Query: 194 KISSTAQIAHSFLE 207
S A++ +S L+
Sbjct: 139 GNS--AKVVYSILQ 150
Score = 83.5 bits (207), Expect = 1e-19
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 31/151 (20%)
Query: 9 GIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIY 66
+P E +K+ D + P+F K Y+ +V E + + + + + A
Sbjct: 82 TGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFV-VQVTA---------- 130
Query: 67 SITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSI-TVVDELDFETV 125
D + Y + K++YSI G F+V+ TG I T + +D E
Sbjct: 131 ------------TDADDPTYGNSAKVVYSILQGQ--PYFSVESETGIIKTALLNMDRENR 176
Query: 126 QEYTLTVRATDS---VSGHSAEVFVSVRVTD 153
++Y + ++A D + G S V++ +TD
Sbjct: 177 EQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 26.5 bits (59), Expect = 9.0
Identities = 4/30 (13%), Positives = 7/30 (23%)
Query: 166 YNVSISEAAPFGTLILKVRALDNDSGKQKI 195
+ E + D D G +
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRGDGSL 35
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 113 bits (286), Expect = 5e-31
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 29/185 (15%)
Query: 38 VSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSI 96
+++ E+ + P L IR++ N L YS+TG +
Sbjct: 7 INLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGA----------------------- 43
Query: 97 TGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTDVN 155
F ++ +G ++V LD E + + L A D + + + + V D+N
Sbjct: 44 -DQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMN 102
Query: 156 DCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLHR 215
D PEF +N S+ E + GT ++ V A+D D + + + L +
Sbjct: 103 DNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPN---ALNGMLRYRILSQAPSTPSP 159
Query: 216 YMFTI 220
MFTI
Sbjct: 160 NMFTI 164
Score = 83.2 bits (206), Expect = 2e-19
Identities = 40/157 (25%), Positives = 57/157 (36%), Gaps = 35/157 (22%)
Query: 8 SGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
+ + + VID + P F Q ++ SV E + + + +T+ A
Sbjct: 83 INGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYV-MTVTAIDA------ 135
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGN----SREQFAVDFNTGSI-TVVDEL 120
D L N L Y I S F ++ TG I TV L
Sbjct: 136 --------------DDPNAL---NGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGL 178
Query: 121 DFETVQEYTLTVRATDS----VSGHSAEVFVSVRVTD 153
D E VQ+YTL ++ATD G S + VTD
Sbjct: 179 DREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 117 bits (294), Expect = 1e-30
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 40/209 (19%)
Query: 8 SGIQPCSTEVSVNVKVID-KSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIY 66
+ + + ++ K P F Y + E+ + S + ++I+A+S +R++ Y
Sbjct: 195 VDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDI-ISIKAKSFADREIRY 253
Query: 67 SIT-GGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETV 125
++ G F + +G+ L + ELDFE +
Sbjct: 254 TLKAQGQGAGTFNIGPTSGIVKLAK----------------------------ELDFEDL 285
Query: 126 QE---YTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNV-SISEAAPFGTLIL 181
++ Y+L V AT+ G S V +++RVTDVND P+F Y ++ E P GT IL
Sbjct: 286 RQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSIL 345
Query: 182 KVRALDNDSGKQKISSTAQIAHSFLEIFF 210
+V+A+D+DSG S A+I + + F
Sbjct: 346 RVKAMDSDSG-----SNAEIEYLVSDDHF 369
Score = 116 bits (292), Expect = 3e-30
Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 36/192 (18%)
Query: 9 GIQPCSTEVSVNVKVIDK--SMPVFDKQ--FYSVSVREDIQIHSPLPLTIRAESPLNRKL 64
+ V + V D P F + V+ + ++P+ T++A
Sbjct: 87 AGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPV-FTLQA-------- 137
Query: 65 IYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFET 124
D +T N + Y I + +F VD +G + F+
Sbjct: 138 --------------RDPDTDH---N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL 178
Query: 125 VQEYTLTVRATDS---VSGHSAEVFVSVRVT-DVNDCPPEFPQDWYNVSISEAAPFGTLI 180
EY L V+A D V + R++ P+F Y I E + I
Sbjct: 179 DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDI 238
Query: 181 LKVRALDNDSGK 192
+ ++A +
Sbjct: 239 ISIKAKSFADRE 250
Score = 87.0 bits (216), Expect = 9e-20
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 17/120 (14%)
Query: 89 NRKLIYSITGGNSREQFAVDFN--------TGSITVVDELDFETVQE------YTLTVRA 134
K ++ + +E F + + G++ V + D+E + + +
Sbjct: 24 EGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNM 83
Query: 135 TDS-VSGHSAEVFVSVRVTDVNDCPPEFPQD--WYNVSISEAAPFGTLILKVRALDNDSG 191
+ ++ V + V DVND PP F + AP T + ++A D D+
Sbjct: 84 GHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTD 143
Score = 61.2 bits (149), Expect = 6e-11
Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 40/149 (26%)
Query: 12 PCSTEVSVNVKVIDK--SMPVFDKQFYSV-SVREDIQIHSPLPLTIRAESPLNRKLIYSI 68
ST V + ++V D + P F+ Y +V EDI + + I +
Sbjct: 303 GFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTS---------------ILRV 347
Query: 69 TGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQE- 127
A+D ++G N ++ Y ++ + FAVD + G I +LD +
Sbjct: 348 K--------AMDSDSGS---NAEIEYLVSDDH----FAVD-SNGIIVNNKQLDADNNNAY 391
Query: 128 YTLTVRATDSVSGH---SAEVFVSVRVTD 153
Y V A D G S V V +
Sbjct: 392 YEFIVTAKD--KGEPPKSGVATVRVYTKN 418
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 115 bits (289), Expect = 2e-30
Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 38/193 (19%)
Query: 9 GIQPCSTEVSVNVKVIDK--SMPVFDKQ--FYSVSVREDIQIHSPLPLTIRAESPLNRKL 64
+ V + V D P F + V+ + ++P+
Sbjct: 82 AGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFT------------ 129
Query: 65 IYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFET 124
A D +T N + Y I + +F VD +G + F+
Sbjct: 130 -----------LQARDPDTDH---N--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQL 173
Query: 125 VQEYTLTVRATDS-----VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTL 179
EY L V+A D + + + P+F Y I E +
Sbjct: 174 DMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSD 232
Query: 180 ILKVRALDNDSGK 192
I+ ++A +
Sbjct: 233 IISIKAKSFADRE 245
Score = 95.5 bits (238), Expect = 3e-23
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 32/150 (21%)
Query: 11 QPCSTEVSVNVKVID-KSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSIT 69
+ + + ++ K P F Y + E+ + S + ++I+A+S +R++ Y++
Sbjct: 193 RRFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDI-ISIKAKSFADREIRYTLK 251
Query: 70 GGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQE-- 127
G F + +G + + ELDFE +++
Sbjct: 252 AQ---------------------------GQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 284
Query: 128 -YTLTVRATDSVSGHSAEVFVSVRVTDVND 156
Y+L V AT+ G S V +++RVTDVND
Sbjct: 285 VYSLIVTATEDSGGFSTSVDLTIRVTDVND 314
Score = 94.0 bits (234), Expect = 1e-22
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 34/159 (21%)
Query: 48 SPLPLTIR-----AESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSR 102
S + T R A+ K ++ + +E F +
Sbjct: 1 SAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIR--------------------DD 40
Query: 103 EQFAVDFNTGSITVVDELDFE------TVQEYTLTVRATDS-VSGHSAEVFVSVRVTDVN 155
+ G++ V + D+E T+ + + + ++ V + V DVN
Sbjct: 41 NPWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVN 100
Query: 156 DCPPEFPQDW--YNVSISEAAPFGTLILKVRALDNDSGK 192
D PP F + AP T + ++A D D+
Sbjct: 101 DEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDH 139
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 112 bits (281), Expect = 3e-30
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 78 AVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS 137
D G +L + + F ++ NTGS++V LD ET+ Y L V TD+
Sbjct: 27 DSDRPEGS---KFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDA 83
Query: 138 -VSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKIS 196
V + V V D ND P F + Y + E +P GT ++++ A D D +
Sbjct: 84 SGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDP---AT 140
Query: 197 STAQIAHSFLEIFFLSLHRYMFTI 220
A + ++ + MF I
Sbjct: 141 DNALLRYNIRQQTPDKPSPNMFYI 164
Score = 75.1 bits (185), Expect = 2e-16
Identities = 32/160 (20%), Positives = 53/160 (33%), Gaps = 38/160 (23%)
Query: 8 SGIQPCSTEVSVNVKVIDK--SMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI 65
+ + V + V VID+ + P+F + Y V E + + + + A
Sbjct: 83 ASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV-MRMTAFDA------ 135
Query: 66 YSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGN----SREQFAVDFNTGSITVV---D 118
D N L Y+I S F +D G I V
Sbjct: 136 --------------DDPAT---DNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPA 178
Query: 119 ELDFETVQ--EYTLTVRATDS---VSGHSAEVFVSVRVTD 153
LD ET++ +Y L + A D G + ++ + D
Sbjct: 179 LLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 31.2 bits (71), Expect = 0.24
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 166 YNVSISEAAPFGTLILKVRALDNDSG 191
+ ++ PF + KV D G
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEG 33
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 85.5 bits (212), Expect = 3e-21
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 89 NRKLIYSITGG----NSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSA 143
K+ Y TG F + +TG + V LD E + LT A D+ +
Sbjct: 43 GLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEK 102
Query: 144 EVFVSVRVTDVNDCPPEFPQD 164
+ + ++V D+ND P F QD
Sbjct: 103 PLELRIKVLDINDNEPVFTQD 123
Score = 26.1 bits (58), Expect = 7.2
Identities = 4/27 (14%), Positives = 8/27 (29%), Gaps = 1/27 (3%)
Query: 166 YNVSISEAAPFGTLILKVRALDNDSGK 192
+ E I K+ + D +
Sbjct: 17 VALREGEDLSKKNPIAKIHS-DLAEER 42
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 88.1 bits (218), Expect = 5e-21
Identities = 29/191 (15%), Positives = 49/191 (25%), Gaps = 54/191 (28%)
Query: 31 FDKQFYSVSVREDIQIHSPLPLTIRA-----ESPLNRKLIYSITGGNSREQFAVDFNTGL 85
F + Y + D +PL L + A E + +L + G
Sbjct: 3 FSRDAYWEKLYVDQAAGTPL-LYVHALRDAPEEVPSFRLGQHLYGTYR------------ 49
Query: 86 YSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYT--------LTVRATDS 137
T + + +TG + + LD + ++ + LTV
Sbjct: 50 -----------TRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVF 98
Query: 138 VSGH-------SAEVFVSVRVTDVNDCPPE----------FPQDWYNVSISEAAPFGTLI 180
+S V + N P FP+ + I E P GT
Sbjct: 99 LSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFH 158
Query: 181 LKVRALDNDSG 191
Sbjct: 159 QFRLLPVQFLC 169
Score = 84.2 bits (208), Expect = 2e-19
Identities = 25/173 (14%), Positives = 39/173 (22%), Gaps = 41/173 (23%)
Query: 4 SILSSGIQPCSTEVSVNVKVID------------KSMPVFDKQFYSVSVREDIQIHSPLP 51
S S C V F + S +RE+ +
Sbjct: 100 SPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQ 159
Query: 52 LTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNT 111
+ + Y + G F ++
Sbjct: 160 FRL-----------------------LPVQFLCP---QISVAYRLLEGEG-LPFRSAPDS 192
Query: 112 GSITVVDELDFETVQEYTLTVRATD--SVSGHSAEVFVSVRVTDVNDCPPEFP 162
++ LD E ++Y L T V V V D +D PEF
Sbjct: 193 LEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 43.8 bits (103), Expect = 2e-05
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 161 FPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLH-RYMFT 219
F +D Y + GT +L V AL + + + ++ + LH
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEE---VPSFRLGQHLYGTYRTRLHENNWIR 59
Query: 220 I 220
I
Sbjct: 60 I 60
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 82.9 bits (206), Expect = 3e-20
Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 29/134 (21%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
P F+K Y + E+ +P+ L +RA D + G+
Sbjct: 12 PRFEKSVYEADLAENSAPGTPI-LQLRA----------------------ADLDVGV--- 45
Query: 89 NRKLIYSI--TGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEV 145
N ++ Y + R +D +G ++V+ +D E V + TV A D + +
Sbjct: 46 NGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKA 105
Query: 146 FVSVRVTDVNDCPP 159
V + + D ND P
Sbjct: 106 TVVLNIKDENDNVP 119
Score = 66.7 bits (164), Expect = 3e-14
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 149 VRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEI 208
+ ND P F + Y ++E + GT IL++RA D D G QI + F
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVG-----VNGQIEYVFGAA 56
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 80.4 bits (199), Expect = 2e-19
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 78 AVDFNTGLYSLNRKLIYSITGGNS----REQFAVDFNTGSITVVDELDFETVQEYTLTVR 133
+ N L YS+TG + F ++ +G ++V LD E + + L
Sbjct: 25 RIRSGRDK---NLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAH 81
Query: 134 ATDS-VSGHSAEVFVSVRVTDVNDCPPEF 161
A D + + + + V D+ND PEF
Sbjct: 82 AVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 27.6 bits (62), Expect = 1.7
Identities = 3/28 (10%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 165 WYNVSISEAAPFGTLILKVRALDNDSGK 192
+++ E + G ++ + + K
Sbjct: 6 IPPINLPENSR-GPFPQELVRIRSGRDK 32
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 74.0 bits (183), Expect = 5e-17
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 34/132 (25%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
PVF + V + E+ + + + + + A D + G
Sbjct: 12 PVFKEGQVEVHIPENAPVGTSV-IQLH----------------------ATDADIG---S 45
Query: 89 NRKLIYSI---TGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATD--SVSGHSA 143
N ++ Y ++ FA++ TG ITV LD E + +TV A+D S +
Sbjct: 46 NAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARAT 105
Query: 144 EVFVSVRVTDVN 155
V++ VTDVN
Sbjct: 106 ---VTINVTDVN 114
Score = 63.6 bits (156), Expect = 4e-13
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 149 VRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSF 205
+ ND P F + V I E AP GT ++++ A D D G S A+I + F
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIG-----SNAEIRYIF 53
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 69.7 bits (171), Expect = 2e-15
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 26/127 (20%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYS 87
P+ +S E+ + P L I++ K+ YSITG +
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGA-------------- 47
Query: 88 LNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVF 146
F ++ TG + V + LD E + YTL A S + +
Sbjct: 48 ----------DTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME 97
Query: 147 VSVRVTD 153
+ + VTD
Sbjct: 98 ILITVTD 104
Score = 28.9 bits (65), Expect = 0.65
Identities = 5/34 (14%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 159 PEFPQDWYNVSISEAAPFGTLILKVRALDNDSGK 192
P +S E G + + ++ K
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDK 34
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 67.8 bits (166), Expect = 6e-15
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVFVS 148
++K+ Y ++G + F ++ TG I + LD E EYTLT +A D + E
Sbjct: 32 SKKIKYILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSE 91
Query: 149 VRVTDVND 156
+ V D
Sbjct: 92 FIIK-VQD 98
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 67.0 bits (164), Expect = 1e-14
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGH--SAEVF 146
+ + Y ++G + F +D TG I + LD E +YTL +A D +G E
Sbjct: 33 DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESE 92
Query: 147 VSVRVTD 153
+++ D
Sbjct: 93 FIIKIQD 99
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 62.8 bits (153), Expect = 4e-13
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 77 FAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATD 136
D G +L + + F ++ NTGS++V LD ET+ Y L V TD
Sbjct: 26 VDSDRPEGS---KFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82
Query: 137 S-VSGHSAEVFVSVRVTD 153
+ V + V V D
Sbjct: 83 ASGKTLEGPVPLEVIVID 100
Score = 28.9 bits (65), Expect = 0.67
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 166 YNVSISEAAPFGTLILKVRALDNDSG 191
+ ++ PF + KV D G
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEG 33
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 59.7 bits (145), Expect = 7e-12
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 78 AVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS 137
D G KL + F ++ N+G ++V LD E + Y L V TD
Sbjct: 26 VSDRIPGS---KIKLYGKGVDQEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTDE 82
Query: 138 -VSGHSAEVFVSVRVTD 153
V + + V D
Sbjct: 83 NGKTIEGPVDLEILVID 99
Score = 30.8 bits (70), Expect = 0.11
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 165 WYNVSISE--AAPFGTLILKVRALDNDSG 191
++SI E PF ++ +V D G
Sbjct: 4 APSISIPENQRIPFPKIVGRVVVSDRIPG 32
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 57.8 bits (140), Expect = 3e-11
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 88 LNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATD-SVSGHSAEVF 146
+L + + F ++ +G ++V LD E + Y L V TD S V
Sbjct: 33 AKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVR 92
Query: 147 VSVRVTD 153
+ + V D
Sbjct: 93 LDISVID 99
Score = 27.4 bits (61), Expect = 1.7
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 166 YNVSISE--AAPFGTLILKVRALDNDSG 191
+ I E PF + KV + G
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGTEG 32
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell
adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Length = 159
Score = 41.3 bits (96), Expect = 6e-05
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 139 SGHSAEVFVSVRVT-DVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALD 187
SGH + + + ++ C FP+D Y+ + + G +L V+ +
Sbjct: 13 SGHIDDDDKHMEASGEIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSN 62
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 8e-05
Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 50/214 (23%)
Query: 30 VFDK------QFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQF-AVDFN 82
V+++ Y S+ DI I++P+ LTI +++ RE + A+ F
Sbjct: 1645 VWNRADNHFKDTYGFSIL-DIVINNPVNLTIHFGGEKGKRI---------RENYSAMIFE 1694
Query: 83 TGL--YSLNRKLIYSITGGNSREQFAVD----FNTGS----ITVVDELDFETVQEYTLTV 132
T + K+ I ++ F + T +T++++ FE ++ L +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL-I 1753
Query: 133 RATDSVSGHS----------AEVF--------VSVRVTDVNDCPPEFPQDWYNVSISEAA 174
A + +GHS A+V V R + P N +
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 175 PFGTLILKVRALDNDSGKQKISSTAQIAHSFLEI 208
P G + + ++ + + + +EI
Sbjct: 1814 P-GRV---AASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 35.0 bits (80), Expect = 0.027
Identities = 25/165 (15%), Positives = 45/165 (27%), Gaps = 63/165 (38%)
Query: 29 PVFDKQFYSVSVREDIQIHSPL---------------PLTIRAES---PLNRKLIYSI-T 69
F +F V+ HS L ++ A+ P +Y
Sbjct: 414 LKFSNRFLPVASPF----HSHLLVPASDLINKDLVKNNVSFNAKDIQIP-----VYDTFD 464
Query: 70 GGNSREQFAVDFNTGLYSLNRKLIYSITGG--------NSREQFAVDFNTGSITVVDELD 121
G + R S++ +++ I + +DF G + +
Sbjct: 465 GSDLRVLSG--------SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG--- 513
Query: 122 FETVQEYTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPE---FPQ 163
LT R D G V + ++ P + F Q
Sbjct: 514 -------VLTHRNKD---GTGVRV---IVAGTLDINPDDDYGFKQ 545
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 38.0 bits (89), Expect = 6e-04
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 96 ITGGNSREQFAVDFNTGSITVVDELDFETV----QEYTLTVRATDSVSGHSAEVF-VSVR 150
I +++ ++ +G++ + ++LD E + L + + ++
Sbjct: 48 ILSKGNKQLLQLEQKSGNLLLKEKLDREELCGSTNPCILHF---QVLLKSPVQFIQGEIQ 104
Query: 151 VTDVNDCPPEFPQDWYNVSI 170
+ DVND PEF +D S
Sbjct: 105 LQDVNDHAPEFMEDESGPSS 124
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI
BIG-open NESG, cell WALL, hydrolase,
peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Length = 103
Score = 36.7 bits (85), Expect = 0.001
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 111 TGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFP 162
T I V E+D Y LT TDS GH +V V + + P
Sbjct: 44 TSKIKVDGEVDTTKAGTYVLTYTVTDS-KGHEVTAKQTVTVKVREEVKNDKP 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 37/247 (14%), Positives = 66/247 (26%), Gaps = 94/247 (38%)
Query: 79 VDFNTGLYSL-NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYT---LTVRA 134
+DF TG + + ++ F F VD D + VQ+ L+
Sbjct: 7 MDFETGEHQYQYKDIL---------SVFEDAF-------VDNFDCKDVQDMPKSILSKEE 50
Query: 135 TDSVSGHSAEV------------------------------------------------- 145
D + V
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 146 -FVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND----------SGKQK 194
++ R ND F + YNVS + P+ L + L SGK
Sbjct: 111 MYIEQRDRLYND-NQVFAK--YNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 195 ISSTAQIAHSFLEIFFLSLHRYMFTIGKGFFPER--ELLQPRCYRSEIEDRRRTGEEKAS 252
++ +++ + ++ + PE E+LQ Y+ + ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIF-WL-NLKNCNSPETVLEMLQKLLYQID-----PNWTSRSD 218
Query: 253 HSENKPY 259
HS N
Sbjct: 219 HSSNIKL 225
Score = 34.4 bits (78), Expect = 0.044
Identities = 49/272 (18%), Positives = 82/272 (30%), Gaps = 87/272 (31%)
Query: 22 KVIDKSMPVFD-----KQFYSVSV-REDIQIHSPLPLTIRAESPLNRKLIYSITGGNSRE 75
+I+ S+ V + K F +SV I + L L++ + +I S
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-LSL-----IWFDVIKSDV-----M 405
Query: 76 QFAVDFNTGLYSLNRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRAT 135
+ YSL K +I++ + E L V+
Sbjct: 406 VVVNKLHK--YSLVEK----------------QPKESTISIPS-IYLE------LKVKLE 440
Query: 136 DSVSGHSA--EVFVSVRVTDVNDCPPEFPQD--WY--------NVSISE-AAPFGTLILK 182
+ + H + + + + D +D P D +Y N+ E F + L
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 183 VRALDNDSGKQKI--SSTAQIAHSFLEIFFLSLHRYMFTIGKGFFPERELLQPRCYRSEI 240
R L +QKI STA A + L+ L Q + Y+ I
Sbjct: 500 FRFL-----EQKIRHDSTAWNASGSI----LNT----------------LQQLKFYKPYI 534
Query: 241 EDRRRTGEEKASHSENKPYLFTINFATAGIES 272
D E + + F I S
Sbjct: 535 CDNDPKYERLVNAILD----FLPKIEENLICS 562
Score = 32.1 bits (72), Expect = 0.21
Identities = 46/287 (16%), Positives = 87/287 (30%), Gaps = 80/287 (27%)
Query: 25 DKSMPVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLI-YSITGGNSR-EQFAVDFN 82
D+ + K + ++ LP + +P +I SI G + + + +
Sbjct: 301 DEVKSLLLK-YLDCRPQD-------LPREVLTTNPRRLSIIAESIRDGLATWDNWK---H 349
Query: 83 TGLYSLNRKLIYSITGGNSRE------QFAVDFNTGS-ITVV------DELDFETVQ--- 126
L + S+ E + +V F + I + ++ V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 127 --------------EYTLTV---------RATDSVSGHSA--EVFVSVRVTDVNDCPPEF 161
E T+++ + + + H + + + + D +D P
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP- 467
Query: 162 PQD--WY--------NVSISE-AAPFGTLILKVRALDNDSGKQKI--SSTAQIAHSFLEI 208
D +Y N+ E F + L R L +QKI STA A +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-----EQKIRHDSTAWNASGSILN 522
Query: 209 FFLSLHRYMFTIGKGFFPERELLQPRCYRSEIEDRRRTGEEKASHSE 255
L Y K + + + R + I D EE S+
Sbjct: 523 TLQQLKFY-----KPYICDNDPKYER-LVNAILDFLPKIEENLICSK 563
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 28.7 bits (65), Expect = 0.74
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 96 ITGGNSREQFAVDFNTGSITVVDELDFETV----QEYTLTVRATDSVSGHSAEVF-VSVR 150
+ + + V+ G + V +D E + E ++ + + + +VF V V
Sbjct: 40 VASKDRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHL---EVIVDRPLQVFHVEVE 96
Query: 151 VTDVND 156
V D+ND
Sbjct: 97 VRDIND 102
>4dot_A Group XVI phospholipase A2; alpha/beta fold,
phospholipase/acyltransferase, phosphatidyl
phosphatidylethanolamine, membrane, hydrolase; 1.96A
{Homo sapiens}
Length = 140
Score = 27.8 bits (61), Expect = 2.4
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTI---RAESPLNRKLIYSITGGNSREQFAVDFNTG 84
V Y V+ + D + +SPLP + RAE + ++++Y +T N E F + G
Sbjct: 67 DVAGSDKYQVNNKHDDK-YSPLPCSKIIQRAEELVGQEVLYKLTSENC-EHFVNELRYG 123
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A
{Mycobacterium tuberculosis}
Length = 386
Score = 28.3 bits (63), Expect = 3.0
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 147 VSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
V VR D P + + W+ + +++ G V A
Sbjct: 8 VGVREIDAGALPTRYARGWHCLGVAKDYLEGKP-HGVEAFGTK 49
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid
acyltransferase, hydrol transferase; 1.25A {Homo
sapiens} PDB: 2kyt_A
Length = 137
Score = 27.3 bits (60), Expect = 3.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 47 HSPLPLTI---RAESPLNRKLIYSITGGNSREQFAVDFNTG 84
++PLP RAE + ++L YS+T N E F G
Sbjct: 84 YTPLPSNKIVKRAEELVGQELPYSLTSDNC-EHFVNHLRYG 123
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome,
unknown function; 1.72A {Clostridium thermocellum} PDB:
3pdg_A
Length = 190
Score = 27.3 bits (60), Expect = 5.1
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 127 EYTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFPQD 164
+ ++V A D ++ SV++ V E
Sbjct: 154 NHEISVIAYDD-DDAASTP-DSVKIF-VKQARLEHHHH 188
Score = 26.5 bits (58), Expect = 7.7
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 127 EYTLTVRATDSV--SGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVR 184
Y L A S S V V+V P+ +E L +
Sbjct: 62 AYNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVKLTAPKSNVVAYGNE-----FLKITAT 116
Query: 185 ALDNDSG 191
A D+D
Sbjct: 117 ASDSDGK 123
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET:
MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB:
2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Length = 372
Score = 27.0 bits (60), Expect = 7.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 119 ELDFETVQEYTLTVRATDS 137
+ E E + +A DS
Sbjct: 322 TVPVEAGTELEIVCKAVDS 340
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 27.1 bits (60), Expect = 7.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 119 ELDFETVQEYTLTVRATDS 137
+ E E + +A DS
Sbjct: 416 TVPVEAGTELEIVCKAVDS 434
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome,
unknown function; 1.69A {Clostridium thermocellum}
Length = 98
Score = 25.5 bits (56), Expect = 8.6
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 127 EYTLTVRATDS--VSGHSAEVFVSV 149
+ ++V A D + V + V
Sbjct: 62 NHEISVIAYDDDDAASTPDSVKIFV 86
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.380
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,020,975
Number of extensions: 233849
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 524
Number of HSP's successfully gapped: 94
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)