RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7563
(274 letters)
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 48.8 bits (115), Expect = 2e-08
Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 32/131 (24%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
P F V V ED+ + + +
Sbjct: 4 PFFVPAVSRVDVSEDLSRGEKIISLVA---------QDPDKQQIQK-------------- 40
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQE----YTLTVRATDS-VSGHSA 143
+ G + V+ + G +T LD E+ YT+ + TD VS +
Sbjct: 41 ----LSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTG 96
Query: 144 EVFVSVRVTDV 154
+ + V DV
Sbjct: 97 TGTLILHVLDV 107
Score = 36.9 bits (84), Expect = 4e-04
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
Query: 156 DCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLHR 215
+ P F V +SE G I+ + A D D + + S ++
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPA-RWLTVNKDN 59
Query: 216 YMFTIGKGFFPERELLQPRCYRSEIE 241
+ T E E ++ Y +
Sbjct: 60 GIVTGNGNLDRESEYVKNNTYTVIML 85
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 48.8 bits (115), Expect = 5e-08
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 153 DVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDND 189
++ C FP+D Y+ + + G +L V+ + +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCN 41
Score = 42.3 bits (98), Expect = 8e-06
Identities = 16/155 (10%), Positives = 38/155 (24%), Gaps = 34/155 (21%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
F + YS + +D+ PL L ++ + +
Sbjct: 11 TGFPEDVYSAVLPKDVHEGQPL-LNVKFSNCNRK-------------------------- 43
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVFVS 148
+ +S G++ V ++ + A D + +V V+
Sbjct: 44 -----RKVQYESSEPADFKVDEDGTVYAVRSFPLTA-EQAKFLIYAQDKETQEKWQVAVN 97
Query: 149 VRVTDVNDCPPEFPQDWY-NVSISEAAPFGTLILK 182
+ P + + L+
Sbjct: 98 LSREPTLTEEPMKEPHEIEEIVFPRQLAKHSGALQ 132
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 46.3 bits (108), Expect = 2e-07
Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 29/131 (22%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
P F ++ + SV E + + + A D + + +
Sbjct: 5 PEFTQEVFEGSVAEGAVPGTSVM-----------------------KVSATDADDDVNTY 41
Query: 89 NRKLIYSITGGNS----REQFAVDFNTGSITVVDEL-DFETVQEYTLTVRATDSVS-GHS 142
N + Y+I + + F V+ +TG I+V+ D E+ YTL V+A D G S
Sbjct: 42 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLS 101
Query: 143 AEVFVSVRVTD 153
+ V D
Sbjct: 102 TTAKAVITVKD 112
Score = 40.9 bits (94), Expect = 2e-05
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 155 NDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLH 214
ND PEF Q+ + S++E A GT ++KV A D D + A IA++ + H
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYN--AAIAYTIVSQDPELPH 58
Query: 215 RYMFTIGKGFFPERELLQPRCY 236
+ MFT+ + L
Sbjct: 59 KNMFTVNRDTGVISVLTSGLDR 80
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 46.2 bits (108), Expect = 2e-07
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 29/131 (22%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
P F + + SVRE +Q + + A D + + SL
Sbjct: 6 PKFTQDVFRGSVREGVQPGTQVM-----------------------AVSATDEDDNIDSL 42
Query: 89 NRKLIYSITGG----NSREQFAVDFNTGSITVV-DELDFETVQEYTLTVRATDSVS-GHS 142
N L YSI F ++ TG I+++ LD E EYTLTV+ATD G S
Sbjct: 43 NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLS 102
Query: 143 AEVFVSVRVTD 153
E +++TD
Sbjct: 103 VEGKAIIQITD 113
Score = 40.0 bits (92), Expect = 4e-05
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 155 NDCPPEFPQDWYNVSISEAAPFGTLILKVRA 185
ND P+F QD + S+ E GT ++ V A
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSA 32
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 44.7 bits (104), Expect = 8e-07
Identities = 31/133 (23%), Positives = 46/133 (34%), Gaps = 31/133 (23%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
P F Q ++ SV E + + + A+D +
Sbjct: 5 PEFLHQVWNGSVPEGSKPGTYVMT-----------------------VTAIDADDPNALN 41
Query: 89 NRKLIYSITG---GNSREQFAVDFNTGSI-TVVDELDFETVQEYTLTVRATDS----VSG 140
++ S F ++ TG I TV LD E VQ+YTL ++ATD G
Sbjct: 42 GMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYG 101
Query: 141 HSAEVFVSVRVTD 153
S + VTD
Sbjct: 102 LSNTATAVITVTD 114
Score = 42.8 bits (99), Expect = 3e-06
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 155 NDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLH 214
ND PEF +N S+ E + GT ++ V A+D D + + + +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNA---LNGMLRYRIVSQAPSTPS 57
Query: 215 RYMFTIGKGFFPERELLQPRCY 236
MFTI +
Sbjct: 58 PNMFTINNETGDIITVAAGLDR 79
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 43.6 bits (102), Expect = 2e-06
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 26/118 (22%)
Query: 38 VSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSI 96
+S E+ + P L I++ K+ YSITG +
Sbjct: 10 ISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGA----------------------- 46
Query: 97 TGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTD 153
F ++ TG + V + LD E + YTL A S + + + + VTD
Sbjct: 47 -DTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
Score = 29.3 bits (65), Expect = 0.16
Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 6/64 (9%)
Query: 159 PEFPQDWYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLHRYMF 218
P +S E G + + ++ ++ +S + +F
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKD-----KEGKVFYSITGQGADTPPVGVF 54
Query: 219 TIGK 222
I +
Sbjct: 55 IIER 58
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 43.2 bits (101), Expect = 2e-06
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 26/118 (22%)
Query: 38 VSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSI 96
+ V E+ + P L I++ K+ YSITG +
Sbjct: 7 IKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPP------------------- 47
Query: 97 TGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTD 153
+ F +++ TG + V LD E +Y L+ A S + +++ V D
Sbjct: 48 -----QGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100
Score = 27.8 bits (61), Expect = 0.58
Identities = 6/56 (10%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 165 WYNVSISEAAPFGTLILKVRALDNDSGKQKISSTAQIAHSFLEIFFLSLHRYMFTI 220
+ +SE G ++ + ++ ++ +S + + +F I
Sbjct: 4 IPPIKVSENER-GPFPKRLVQIKSNKD-----RFNKVYYSITGQGADNPPQGVFRI 53
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 42.7 bits (99), Expect = 5e-06
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 26/130 (20%)
Query: 29 PVFDKQFYSVSVREDIQIHSPLPLTIRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSL 88
P+FD + Y+ V E+ +I + + R F
Sbjct: 6 PIFDPKTYTALVPEN-EIGFEV-QRLSVTDLDMPGTPAWQAVYKIRVNEGGFF------- 56
Query: 89 NRKLIYSITGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS----VSGHSAE 144
+ N G +T LDFE ++Y L + ++ V ++
Sbjct: 57 -------------NITTDPESNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTST 103
Query: 145 VFVSVRVTDV 154
V+V V DV
Sbjct: 104 ATVTVTVEDV 113
Score = 41.9 bits (97), Expect = 8e-06
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 155 NDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDS 190
ND P F Y + E G + ++ D D
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDM 36
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 41.7 bits (97), Expect = 6e-06
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 26/118 (22%)
Query: 38 VSVREDIQIHSPLPLT-IRAESPLNRKLIYSITGGNSREQFAVDFNTGLYSLNRKLIYSI 96
+++ E+ + P L IR+ N L YS+TG +
Sbjct: 9 INLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGAD---------------------- 46
Query: 97 TGGNSREQFAVDFNTGSITVVDELDFETVQEYTLTVRATDS-VSGHSAEVFVSVRVTD 153
F ++ +G ++V LD E + + L A D + + + + V D
Sbjct: 47 --QPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
Score = 24.8 bits (53), Expect = 5.4
Identities = 3/25 (12%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 168 VSISEAAPFGTLILKVRALDNDSGK 192
+++ E + G ++ + + K
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDK 32
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 30.0 bits (66), Expect = 0.092
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 108 DFNTGSITVVDELDFETVQEYTLTVRATDSVSGHSAEVFVSVRVTDVND 156
+ G+ ++ +Y++ V +D+ + V+ V
Sbjct: 54 LDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQ-NNPQLTVVNATVCSCEG 101
Score = 28.1 bits (61), Expect = 0.46
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 5/36 (13%)
Query: 155 NDCPPEFPQDWYNVSISEAAPFGTLILKVRALDNDS 190
ND P + + P + D D
Sbjct: 1 NDNGPVPSPRVFTMCDQNPEP-----QVLTISDADI 31
>d2vnud2 b.40.4.5 (D:911-998) Exosome complex exonuclease RRP44
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 88
Score = 27.4 bits (61), Expect = 0.49
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 126 QEYTLTVRATDSVSGHSAEVF--VSVRVTDVND 156
EY LT T+S VF V V+V V D
Sbjct: 46 VEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMD 78
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 28.3 bits (62), Expect = 0.54
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 126 QEYTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRA 185
++ L V + +++ ++ +DW ++ P G + + +
Sbjct: 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-----PEGKVYVIID- 130
Query: 186 LDNDSG 191
L SG
Sbjct: 131 LSGSSG 136
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 180
Score = 27.3 bits (60), Expect = 1.7
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 148 SVRVTDVNDCPPEFP-QDWYN 167
S N CP +P QDW N
Sbjct: 94 SKTFMITNLCPNIYPNQDWCN 114
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis
[TaxId: 633]}
Length = 94
Score = 25.5 bits (56), Expect = 3.3
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 129 TLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFPQDWYNVSISEAAPFGTLILKVRALDN 188
T V + + + V V D P + G L K+ +
Sbjct: 4 TAAVIGDGAPANGKTAITVEFTVADFEGKPLA------GQEVVITTNNGALPNKITEKTD 57
Query: 189 DSGKQKISSTAQIA 202
+G +I+ T
Sbjct: 58 ANGVARIALTNTTD 71
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 103
Score = 24.1 bits (52), Expect = 9.5
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 120 LDFETVQEYTLTVRATDSVSGHSAEVFVSVRVTDVNDCPPEFPQDW 165
L+ E ++Y + + HS E + D ++CP + ++W
Sbjct: 42 LEKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQIFREW 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.380
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 966,465
Number of extensions: 43664
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 29
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)