BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7564
         (115 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|307210681|gb|EFN87104.1| Putative fat-like cadherin-related tumor suppressor-like protein
           [Harpegnathos saltator]
          Length = 3435

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 78/97 (80%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV++ K  LDYE T+ YNLSV+ATNMAGA AVC+VIVH+LDRNDN P F Q  Y+
Sbjct: 449 VNPSTGVIVIKNQLDYEKTKFYNLSVSATNMAGASAVCNVIVHVLDRNDNAPRFLQALYS 508

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           G +SE A IG+LVLTNTS PLVI+AED DSE NALL+
Sbjct: 509 GGISEGASIGSLVLTNTSAPLVIKAEDADSELNALLN 545



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P FTQ +Y   VS
Sbjct: 975  GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFTQDSYNISVS 1034

Query: 79   EAAPIGALVLTNTS 92
            EAA  G  VL  +S
Sbjct: 1035 EAASFGTSVLRVSS 1048



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  K+ LD+E    ++ +V A +       +   V V ++D NDN P F Q +
Sbjct: 1076 IDPDEGVIFLKRSLDHETRESHHFTVIAMDRGVPSLSSTAHVWVSVIDMNDNPPKFEQPS 1135

Query: 73   YTGYVSEAAPIGALV 87
            YT  +SE A  G  V
Sbjct: 1136 YTCSLSEHAERGQFV 1150



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 13/110 (11%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
            ++AI+   +   +      G ++T+K LD E  + Y + V AT+  G      V V + D
Sbjct: 1268 MYAIMSETMKEIFDINKLTGEIVTRKKLDREQLKRYEIPVIATDGGGRSGFVMVRVKVGD 1327

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             NDN P F    Y       A I + +  NT   L +RA+D D +  A +
Sbjct: 1328 ENDNAPVFLLREY------KATIQSNLSLNTPF-LKVRAQDADEDEAAKI 1370



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   + LDYE  R Y L++ A +  G   +    +V + + D NDN P F++++Y   
Sbjct: 2014 GVVTIAELLDYERARDYFLTIQAVD-GGIPPLSNHATVNITVTDSNDNAPIFSEVSYRAA 2072

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E A IG  V         + A D DSE N 
Sbjct: 2073 VREDAKIGEKVAQ-------VYANDLDSEENG 2097



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V +LD NDN PY  +  Y   +
Sbjct: 1704 GEVYVAKSLDRETIDRYELEIVGTD---GKYVFETRVTVQVLDVNDNPPYCLRYRYREVL 1760

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  GA VLT       + A D D E NA L
Sbjct: 1761 SEGSHPGAYVLT-------VLATDYDDEPNAKL 1786



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YN+++ A +    +   V S+IV++ D NDN P F    Y   V
Sbjct: 1909 GIVTLGKPLDRETKAMYNVTIQALDQGTPQLMGVASLIVNVQDINDNPPEFASKVYFARV 1968

Query: 78   SEAAPIGALV 87
             E   +G  V
Sbjct: 1969 PEIYAVGTEV 1978



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L  K LD+E+   YNL++  T+     A+  + V ++D ND+ P F++  Y   +SE
Sbjct: 146 GNVLLAKQLDWESQNFYNLTIGVTDGVHT-ALTQLFVTVIDINDHRPEFSESTYHVDISE 204

Query: 80  AAPIGALVLTNTSLPLVIRAEDK 102
               G  +L    L    R EDK
Sbjct: 205 NVEKGERIL---QLHATDRDEDK 224



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +    PLD E    Y L V A + +G   + S +   + I+D NDN P F+  NYT  
Sbjct: 2119 GQITVAAPLDREEIANYVLEVHARD-SGIPMLSSFVMVNIEIMDANDNPPLFSLPNYTAV 2177

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G     +T L  V+   D D+E NA
Sbjct: 2178 VQEDKSLG-----HTVLQFVVT--DADTEPNA 2202



 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E    Y+L     +       CS  + IL  D NDN P FT
Sbjct: 1797 KFSLDKETGVLKTVGQLDRETQARYSLIAHVQDRDKPMWECSSQLEILISDLNDNAPRFT 1856

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   +G LV
Sbjct: 1857 MQTYSSTLPEDVEVGTLV 1874



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +   +PLD EA   + L+V   +      +    VIV + D ND+ P F      G V
Sbjct: 249 GSITLNEPLDREAIERHVLTVMVKDQGTPAKRNYARVIVTVHDHNDHAPEFISEIIQGKV 308

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E +P+G  V+        + A D+D   NA +
Sbjct: 309 YETSPVGTAVVQ-------VCAIDRDRGENARI 334



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V
Sbjct: 1600 GWISTLVQLDKEKQPEYKFQVVATDNGNPKHFARASVHVKLKDYNDNAPAFVDDRYEATV 1659

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +E A  G +V+   ++       DKDS+ N
Sbjct: 1660 NEDALPGTVVVKLITV-------DKDSDVN 1682


>gi|383855810|ref|XP_003703403.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog
            [Megachile rotundata]
          Length = 4739

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 76/97 (78%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G+++ K  LDYE  + YNL+V ATNMAGAKA C+VIVH+LDRNDN P F Q  YT
Sbjct: 1766 VNPSTGIIVIKNELDYEKRKFYNLTVAATNMAGAKAQCNVIVHVLDRNDNAPKFLQATYT 1825

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            G +SE A IG+LVLTNTS PLVI+AED DSE NALL+
Sbjct: 1826 GEISEGASIGSLVLTNTSSPLVIKAEDADSELNALLN 1862



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P FTQ +Y   VS
Sbjct: 2292 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFTQDSYNISVS 2351

Query: 79   EAAPIGALVLTNTS 92
            EAAP G  VL  +S
Sbjct: 2352 EAAPFGTSVLKVSS 2365



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GVL T   LD E    Y L+V+A +   A    ++   V ++++D NDN P F Q     
Sbjct: 458 GVLYTAMNLDAEKKAFYTLTVSAVDQGNAGTRKQSSAKVKINVVDTNDNDPTFEQSEMDV 517

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ E  P G  V+        I A+D+DS  NA +
Sbjct: 518 WIDENEPAGTSVVK-------ITAKDRDSGENAYI 545



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  K+ LD+EA   ++ +V A +       +   V V ++D NDN P F Q +
Sbjct: 2393 IDPEEGVIFLKRSLDHEAHESHHFTVIAIDRGVPSLSSTAHVWVTVIDMNDNPPKFEQPS 2452

Query: 73   YTGYVSEAAPIGALV 87
            YT  +SE A  G  V
Sbjct: 2453 YTCSLSEHAERGQFV 2467



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   + LDYE  R Y L++ A +  G   +    +V + ++D NDN P F++++Y   
Sbjct: 3331 GVITIAEQLDYERARDYFLTIQAID-GGIPPLSNHATVNITVIDSNDNAPIFSEVSYRAS 3389

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E A IG  V         + A D DSE N 
Sbjct: 3390 VREDAKIGEKVTQ-------VFANDLDSEENG 3414



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            VLL KK LD+E    YNL++  T+     AV  ++V ++D ND+ P FT+  Y   +SE 
Sbjct: 1465 VLLAKK-LDWETQNFYNLTIGVTDSVHT-AVTQLLVTVIDINDHRPEFTEHTYRVDISEN 1522

Query: 81   APIGALVL 88
               G ++L
Sbjct: 1523 VEKGEVIL 1530



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)

Query: 15  LHPPYGVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQ 70
           + P  G++ TK+ LDYE   R Y L V   +       +A   + V + D NDN P F +
Sbjct: 559 IDPFSGIVRTKQVLDYETMKREYLLHVRVGDWGLPYRRQAEMRLHVKLRDVNDNRPQFER 618

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPL 95
           +  TG+V    PIG+ ++T +++  
Sbjct: 619 IECTGHVPRYVPIGSEIITVSAIDF 643



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T+K LD E  ++Y + V AT+  G      V V + D NDN+P F    Y   +
Sbjct: 2604 GEIVTRKKLDREEQKLYEIPVMATDGGGRSGFVMVRVKVGDENDNSPVFLLREYKASI 2661



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +    PLD E    Y L + A + +G   + S +   + +LD NDN P F+  NYT  
Sbjct: 3436 GQITVAAPLDREEIASYVLEIHARD-SGVPMLSSFVMVNIEVLDANDNPPLFSLSNYTAV 3494

Query: 77   VSEAAPIGALVL 88
            V E  P+G  VL
Sbjct: 3495 VQEDKPLGHTVL 3506



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V +LD NDN PY  +  Y   +
Sbjct: 3021 GEVYVAKALDRETVDRYELEIVGTD---GKYVFKTRVTVQVLDVNDNPPYCLRYRYREIL 3077

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  G  VLT       + A D D E NA L
Sbjct: 3078 SEGSHPGTYVLT-------VLATDYDDEPNAKL 3103



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 13/89 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN--TPYFTQLNYT 74
            G + T + LD+E  +++ L+V A +  G  ++ S   VI+ ++D N+N   P F     +
Sbjct: 1043 GTIRTVQSLDFEERQVHTLTVVARDR-GEPSLSSETMVIIEVVDVNENLHAPVFDDFVVS 1101

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              V E  PIG LV T       +RA+D D
Sbjct: 1102 ASVFENQPIGTLVTT-------VRAKDAD 1123



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E+   Y+L+    +       CS  + IL  D NDN P FT
Sbjct: 3114 KFSLDKETGVLKTVGQLDRESQAKYSLTAHVQDRDKPSWECSSQLEILISDLNDNPPKFT 3173

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   +G LV
Sbjct: 3174 MQTYSATLPEDVEVGTLV 3191



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + TK  LD E+ R Y L+V A +       +   V V +LD NDNTP      Y   V
Sbjct: 1150 GNIKTKAALDVESKRGYWLTVYAQDHGVVPLSSSLQVYVEVLDENDNTPLTEVPVYYPSV 1209

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
             E +P G  VL        IRA D+D
Sbjct: 1210 PENSPAGVSVLQ-------IRAFDRD 1228



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   +YN+++ A +    +  +V S+IV++ D NDN P F    Y   V
Sbjct: 3226 GIVTLGKSLDRETKAMYNVTIQALDQGTPQLTSVTSLIVNVQDINDNPPEFASKVYFSKV 3285

Query: 78   SEAAPIGALV 87
             E   +G  V
Sbjct: 3286 PEIYAVGTEV 3295



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V
Sbjct: 2917 GWISTLVQLDKEKQPEYKFQVVATDNGNPKHFARTSVHVKLKDYNDNPPAFVDDRYEAAV 2976

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +E A  G +V+   ++       DKDS+ N
Sbjct: 2977 NEDALPGTVVVKLITV-------DKDSDVN 2999


>gi|328703041|ref|XP_003242077.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog isoform
            2 [Acyrthosiphon pisum]
          Length = 4147

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 78/97 (80%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GVL+T++PLDYE+  +YNLSVTATNMAG+KAVC V VH+LDRNDN+P     +Y
Sbjct: 1771 AVNPSTGVLVTRRPLDYESCHVYNLSVTATNMAGSKAVCHVSVHVLDRNDNSPELVNTSY 1830

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             G +SEAAPIG+LVL N +LP++I+A D DS +N LL
Sbjct: 1831 KGVISEAAPIGSLVLLNDTLPMLIKASDADSGSNGLL 1867



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFT 69
            K +++   GV+   + LDYE  R Y L++ AT++         +V+I  LD NDN P F 
Sbjct: 3340 KFSINSETGVISVFEMLDYERVRDYLLTIQATDLGEPPLSNQAMVNITILDANDNAPIFG 3399

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            QL YT  + E   +G +V+        + A D DSE N 
Sbjct: 3400 QLAYTTQIDEDVHVGEVVIK-------VSATDLDSELNG 3431



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 8    FAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHI 58
            +A++K   H  +      G +   KPLD E    YNL + AT+ +G   + S   V V +
Sbjct: 3435 YALVKGDHHQQFAIDSFTGNITVAKPLDREQVSTYNLQIRATD-SGVPELMSFALVQVQV 3493

Query: 59   LDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
             D NDN P F+Q NY+ +V E    G +V
Sbjct: 3494 NDVNDNPPLFSQHNYSAFVHEDKKPGWIV 3522



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 28   LDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
            LDYE  + Y L+V AT+ ++G  A   V + + D ND  P F Q +Y   +SE+A  G+ 
Sbjct: 2319 LDYEQVQHYTLTVRATDSVSGVSAEVLVSIMVTDVNDCAPEFYQDSYNISISESASFGSF 2378

Query: 87   VL------TNTSLPLVIRAEDKDSETNA 108
            +L       +T +  VI+   K  E N+
Sbjct: 2379 ILRVTATDNDTDINRVIKYSIKKDEENS 2406



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E    YN+SV A +       ++  + V +LD NDN P F Q  Y   V
Sbjct: 3243 GIVTLAKKLDRETCETYNISVKAIDQGSPPLSSLTQLHVIVLDVNDNPPIFVQRTYYATV 3302

Query: 78   SEAAPIGALV 87
            SE API   V
Sbjct: 3303 SEIAPIDTEV 3312



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++++ PLD E   +Y L+V A +         V V + D NDN+P F    Y   +  
Sbjct: 2624 GEIISRMPLDREEVSLYELNVLACDQGARCGYTLVRVRVSDENDNSPRFLLPEYKTCIHS 2683

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            + P+    LT       ++A D D E +  +  S N
Sbjct: 2684 SLPVNTGFLT-------VKAVDDDQEPSGQITYSIN 2712



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  ++PLD E+   + L+V   + +    K    V++ ++D ND+ P F+     G V
Sbjct: 1572 GVVSVQQPLDRESIARHELTVVVKDQSTPSKKNFARVVITVIDSNDHAPEFSSNIVQGRV 1631

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G  VL        + A DKD   NA
Sbjct: 1632 FETTAVGTSVLQ-------LLATDKDHGENA 1655



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G+L T   LD E    Y L+V+A +   A    ++   V + ++D NDN P F +     
Sbjct: 433 GMLYTAVVLDAEHRSSYTLTVSAIDQGNAGSRKQSAAKVKIFVVDANDNDPLFEKYLMEV 492

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++E  P G  V+        I A DKDS  N  +
Sbjct: 493 SINENEPAGTSVVK-------ISARDKDSGENGYI 520



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYN--LSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  K+ LD+E    ++  L  T T +        + + +LD NDN P F Q +Y+ ++
Sbjct: 2417 GSIYLKQSLDHETRPFHHVVLEATDTGLPPLSTTTHLWITVLDVNDNAPKFEQSSYSCWL 2476

Query: 78   SEAAPIGALV 87
            SE A  G  V
Sbjct: 2477 SEDAERGQFV 2486



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYF-TQLNYTGY 76
            G+L T   LD E    YNL     +   ++  C   V + +LD NDN P F +  N T  
Sbjct: 3138 GLLKTAVTLDRELQSRYNLEAHVQDREKSEWECISKVEITMLDINDNAPLFISNNNNTAS 3197

Query: 77   VSEAAPIGALVL 88
            +SE A IG +V+
Sbjct: 3198 LSEDAQIGTIVI 3209



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYFTQLNY 73
           G L     LD E   +Y L VT ++ A        +A+  +IV   D NDN P F   NY
Sbjct: 900 GNLYVSGRLDRERQELYELKVTVSDCAPEPWTLHTEALIRIIVD--DVNDNAPEFLVQNY 957

Query: 74  TGYVSEAAPIGALV 87
           T    E  PIG++V
Sbjct: 958 TVKALEDLPIGSVV 971



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  + LD+E  + YNL+V  T+     A   + V + D N+  P F+Q  Y   V+E
Sbjct: 1469 GNVLLARQLDWEKQKEYNLTVAVTDGVYTTA-TQLFVSVKDINEYRPKFSQDLYEVNVTE 1527

Query: 80   AAPIGALVL 88
             A IG+ V+
Sbjct: 1528 NAEIGSPVV 1536



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 50   AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            A+  V V +LD NDN P F    Y+  +SE    G LV+   ++ L    E K+ E   L
Sbjct: 2862 ALTEVYVKVLDENDNAPEFDNDFYSARISETIAEGTLVVKTRAIDL---DEGKNGEIKYL 2918

Query: 110  LDGSTN 115
            +   +N
Sbjct: 2919 ISSKSN 2924


>gi|328703039|ref|XP_003242076.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog isoform
            1 [Acyrthosiphon pisum]
 gi|328703043|ref|XP_003242078.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog isoform
            3 [Acyrthosiphon pisum]
          Length = 4140

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 78/97 (80%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GVL+T++PLDYE+  +YNLSVTATNMAG+KAVC V VH+LDRNDN+P     +Y
Sbjct: 1771 AVNPSTGVLVTRRPLDYESCHVYNLSVTATNMAGSKAVCHVSVHVLDRNDNSPELVNTSY 1830

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             G +SEAAPIG+LVL N +LP++I+A D DS +N LL
Sbjct: 1831 KGVISEAAPIGSLVLLNDTLPMLIKASDADSGSNGLL 1867



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFT 69
            K +++   GV+   + LDYE  R Y L++ AT++         +V+I  LD NDN P F 
Sbjct: 3333 KFSINSETGVISVFEMLDYERVRDYLLTIQATDLGEPPLSNQAMVNITILDANDNAPIFG 3392

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            QL YT  + E   +G +V+        + A D DSE N 
Sbjct: 3393 QLAYTTQIDEDVHVGEVVIK-------VSATDLDSELNG 3424



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 8    FAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHI 58
            +A++K   H  +      G +   KPLD E    YNL + AT+ +G   + S   V V +
Sbjct: 3428 YALVKGDHHQQFAIDSFTGNITVAKPLDREQVSTYNLQIRATD-SGVPELMSFALVQVQV 3486

Query: 59   LDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
             D NDN P F+Q NY+ +V E    G +V
Sbjct: 3487 NDVNDNPPLFSQHNYSAFVHEDKKPGWIV 3515



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G+L     LDYE  + Y L+V AT+ ++G  A   V + + D ND  P F Q +Y   +S
Sbjct: 2304 GLLYAVDNLDYEQVQHYTLTVRATDSVSGVSAEVLVSIMVTDVNDCAPEFYQDSYNISIS 2363

Query: 79   EAAPIGALVL------TNTSLPLVIRAEDKDSETNA 108
            E+A  G+ +L       +T +  VI+   K  E N+
Sbjct: 2364 ESASFGSFILRVTATDNDTDINRVIKYSIKKDEENS 2399



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E    YN+SV A +       ++  + V +LD NDN P F Q  Y   V
Sbjct: 3236 GIVTLAKKLDRETCETYNISVKAIDQGSPPLSSLTQLHVIVLDVNDNPPIFVQRTYYATV 3295

Query: 78   SEAAPIGALV 87
            SE API   V
Sbjct: 3296 SEIAPIDTEV 3305



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++++ PLD E   +Y L+V A +         V V + D NDN+P F    Y   +  
Sbjct: 2617 GEIISRMPLDREEVSLYELNVLACDQGARCGYTLVRVRVSDENDNSPRFLLPEYKTCIHS 2676

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            + P+    LT       ++A D D E +  +  S N
Sbjct: 2677 SLPVNTGFLT-------VKAVDDDQEPSGQITYSIN 2705



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  ++PLD E+   + L+V   + +    K    V++ ++D ND+ P F+     G V
Sbjct: 1572 GVVSVQQPLDRESIARHELTVVVKDQSTPSKKNFARVVITVIDSNDHAPEFSSNIVQGRV 1631

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G  VL        + A DKD   NA
Sbjct: 1632 FETTAVGTSVLQ-------LLATDKDHGENA 1655



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G+L T   LD E    Y L+V+A +   A    ++   V + ++D NDN P F +     
Sbjct: 433 GMLYTAVVLDAEHRSSYTLTVSAIDQGNAGSRKQSAAKVKIFVVDANDNDPLFEKYLMEV 492

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++E  P G  V+        I A DKDS  N  +
Sbjct: 493 SINENEPAGTSVVK-------ISARDKDSGENGYI 520



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYN--LSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  K+ LD+E    ++  L  T T +        + + +LD NDN P F Q +Y+ ++
Sbjct: 2410 GSIYLKQSLDHETRPFHHVVLEATDTGLPPLSTTTHLWITVLDVNDNAPKFEQSSYSCWL 2469

Query: 78   SEAAPIGALV 87
            SE A  G  V
Sbjct: 2470 SEDAERGQFV 2479



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYF-TQLNYTGY 76
            G+L T   LD E    YNL     +   ++  C   V + +LD NDN P F +  N T  
Sbjct: 3131 GLLKTAVTLDRELQSRYNLEAHVQDREKSEWECISKVEITMLDINDNAPLFISNNNNTAS 3190

Query: 77   VSEAAPIGALVL 88
            +SE A IG +V+
Sbjct: 3191 LSEDAQIGTIVI 3202



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYFTQLNY 73
           G L     LD E   +Y L VT ++ A        +A+  +IV   D NDN P F   NY
Sbjct: 900 GNLYVSGRLDRERQELYELKVTVSDCAPEPWTLHTEALIRIIVD--DVNDNAPEFLVQNY 957

Query: 74  TGYVSEAAPIGALV 87
           T    E  PIG++V
Sbjct: 958 TVKALEDLPIGSVV 971



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  + LD+E  + YNL+V  T+     A   + V + D N+  P F+Q  Y   V+E
Sbjct: 1469 GNVLLARQLDWEKQKEYNLTVAVTDGVYTTA-TQLFVSVKDINEYRPKFSQDLYEVNVTE 1527

Query: 80   AAPIGALVL 88
             A IG+ V+
Sbjct: 1528 NAEIGSPVV 1536



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 50   AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            A+  V V +LD NDN P F    Y+  +SE    G LV+   ++ L    E K+ E   L
Sbjct: 2855 ALTEVYVKVLDENDNAPEFDNDFYSARISETIAEGTLVVKTRAIDL---DEGKNGEIKYL 2911

Query: 110  LDGSTN 115
            +   +N
Sbjct: 2912 ISSKSN 2917


>gi|307179930|gb|EFN68065.1| Putative fat-like cadherin-related tumor suppressor-like protein
           [Camponotus floridanus]
          Length = 3508

 Score =  130 bits (328), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 77/97 (79%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV++ K  LDYE T+ YNL+V+ATNMAGA A C+VI+H+LDRNDN P F Q  Y+
Sbjct: 532 VNPSTGVIVIKNQLDYENTKFYNLTVSATNMAGASATCNVIIHVLDRNDNAPRFLQALYS 591

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           G +SE A IG+LVLTNTS PLVI+AED DSE NALL+
Sbjct: 592 GEISEGASIGSLVLTNTSTPLVIKAEDADSELNALLN 628



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P FTQ +Y   +S
Sbjct: 1058 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFTQDSYNISIS 1117

Query: 79   EAAPIGALVLTNTS 92
            EAAP G  VL  +S
Sbjct: 1118 EAAPFGTSVLRVSS 1131



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++  + LDYE  R Y L++ A +  G   +    +V + + D NDN P F++++Y  +
Sbjct: 2097 GVIIIAEQLDYERARDYFLTIQAVD-GGIPPLSNHATVNITVTDSNDNAPIFSEVSYRAF 2155

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E A IG  V         + A D DSE N 
Sbjct: 2156 VREDAKIGEKVTQ-------VYANDLDSEENG 2180



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++T+K LD E  + Y + V A +  G      V V + D NDN+P F    Y      
Sbjct: 1370 GEIVTRKKLDREEQKRYEIPVMAMDGGGRSGFVMVRVKVGDENDNSPVFLLREY------ 1423

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             A I   +  NTS  L ++A+D D +  A +
Sbjct: 1424 KATIQGNLSINTSF-LKVKAQDADEDEAAKI 1453



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  K+ LD+E    ++ +V A +       +   V V ++D NDN P F Q +YT  +
Sbjct: 1164 GVIFLKQSLDHETHESHHFTVIAMDRGVPSLSSTAHVWVSVIDMNDNPPKFEQPSYTCSL 1223

Query: 78   SEAAPIGALV 87
            SE A  G  V
Sbjct: 1224 SEHAERGQFV 1233



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G ++   PLD E    Y L V A +  G   + S +   + ILD NDN P F+  NYT  
Sbjct: 2202 GQIIVAAPLDREEIASYVLEVHARD-NGIPMLSSFVMVNIEILDANDNPPLFSLPNYTAI 2260

Query: 77   VSEAAPIGALVL 88
            V E  P+G  VL
Sbjct: 2261 VQEDKPLGHTVL 2272



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V +LD NDN PY  +  Y   +
Sbjct: 1787 GEVYVAKSLDRETIDRYELEIIGTD---GKYVFETKVTVQVLDVNDNPPYCLRYRYREIL 1843

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  GA VLT       + A D D E NA L
Sbjct: 1844 SEGSHPGAYVLT-------VLATDYDDEPNAKL 1869



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YN+++ A +    +   + S+IV++ D NDN P F    Y   V
Sbjct: 1992 GIVTLAKPLDRETKAMYNVTIQALDQGTPQLMGIASLIVNVQDINDNPPEFASKIYFAKV 2051

Query: 78   SEAAPIGALV 87
             E   IG  V
Sbjct: 2052 PEIYAIGTEV 2061



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L  K LD+E    YNL++  T+     A+  ++V ++D ND+ P FT+  Y   +SE
Sbjct: 229 GNVLLAKRLDWETQNFYNLTIGVTDGVHT-ALTQLLVTVIDINDHRPEFTESTYRVDISE 287

Query: 80  AAPIGALVL 88
               G  +L
Sbjct: 288 NVEEGEKIL 296



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +   KPLD E    + L+V   +      +    VIV + D ND+ P F      G V
Sbjct: 332 GSITLNKPLDRETIEEHVLTVMVKDQGTPAKRNYARVIVTVHDHNDHQPEFISEIIQGKV 391

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E +PIG+ V+   ++       D+D   NA +
Sbjct: 392 YETSPIGSAVVQMCAI-------DRDRGENARI 417



 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E    Y+L     +       CS  + IL  D NDN P FT
Sbjct: 1880 KFSLDRETGVLKTVGQLDRETQAKYSLMAHVQDRDKPTWECSSQLEILVSDLNDNAPKFT 1939

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   +G LV
Sbjct: 1940 MQTYSSTLPEDVEVGTLV 1957



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V
Sbjct: 1683 GWISTLVQLDKEKQPEYKFQVVATDNGNPKHFARTSVHVKLKDYNDNAPAFVDDRYEATV 1742

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +E A  G +V+   ++       DKDS+ N
Sbjct: 1743 NENALPGTVVVKLITI-------DKDSDVN 1765


>gi|332019420|gb|EGI59904.1| Putative fat-like cadherin-related tumor suppressor-like protein
           [Acromyrmex echinatior]
          Length = 3467

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 77/97 (79%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV++ K  LDYE T+ +NL+V+ATNMAGA A C+VIVH+LDRNDN P F Q  Y+
Sbjct: 492 VNPSTGVIVIKNELDYEKTKFFNLTVSATNMAGASATCNVIVHVLDRNDNAPRFLQALYS 551

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           G +SE A IG+LVLTNTS PLVI+AED DSE NALL+
Sbjct: 552 GEISEGASIGSLVLTNTSAPLVIKAEDADSELNALLN 588



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + ILD ND  P FTQ +Y   VS
Sbjct: 1018 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILILDVNDCPPEFTQDSYNISVS 1077

Query: 79   EAAPIGALVL 88
            EAA  G  VL
Sbjct: 1078 EAAVFGTPVL 1087



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++T+K LD E  + Y + V AT+  G      V V I D NDN P F    Y   +  
Sbjct: 1330 GEIVTRKKLDREEQKRYEIPVMATDGGGRSGFVMVRVKIGDENDNAPVFLLREYKATIQ- 1388

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G L L NT   L IRA+D D +  A +
Sbjct: 1389 ----GNLSL-NTPF-LKIRAQDADEDEAAKI 1413



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  K+ LD+E+   ++ +V A +       +   V + ++D NDN P F Q +
Sbjct: 1119 IDPDEGVIFLKRSLDHESHESHHFTVIAMDRGVPSLSSTAHVWMSVIDMNDNPPKFEQPS 1178

Query: 73   YTGYVSEAAPIGALV 87
            YT ++SE A  G  V
Sbjct: 1179 YTCFLSEHAERGQFV 1193



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL   + LDYE  R Y L++ A +  G   +    +V + + D NDN P F++++Y  +
Sbjct: 2057 GVLTIAEQLDYERARDYFLTIQAID-GGIPPLSNHATVNITVTDSNDNAPIFSEVSYRAF 2115

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E A  G  V         I A D DSE N 
Sbjct: 2116 VREDAKTGEKVTQ-------IYANDLDSEENG 2140



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V +LD NDN PY  +  Y   +
Sbjct: 1747 GEVYVAKSLDRETIDRYELQIVGTD---GKYVFETKVTVQVLDVNDNPPYCLRYRYREIL 1803

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  GA VLT       + A D D E NA L
Sbjct: 1804 SEGSHPGAYVLT-------VLATDYDDEPNAKL 1829



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +    PLD E    Y L V A +  G   + S +   + +LD NDN P F+  NYT  
Sbjct: 2162 GQIAVTAPLDREEIASYVLEVHARD-NGIPMLSSFVMVNIEVLDANDNPPLFSLPNYTAV 2220

Query: 77   VSEAAPIGALVL 88
            V E  P+G  VL
Sbjct: 2221 VQEDKPLGHTVL 2232



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           VLL KK LD+E    YNL++  T+      +  ++V ++D ND+ P FT+  Y   +SE 
Sbjct: 191 VLLAKK-LDWETQNFYNLTIGVTDGVHT-TLTQLLVTVIDINDHRPEFTETTYRVDISEN 248

Query: 81  APIGALVL 88
              G  +L
Sbjct: 249 VEKGERIL 256



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E    Y+L+    +       CS  + IL  D NDN P FT
Sbjct: 1840 KFSLDKETGVLKTVGQLDRETQAKYSLTAHVQDRDKPTWECSSQLEILVSDLNDNAPKFT 1899

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   IG LV
Sbjct: 1900 MSTYSSTLPEDVEIGTLV 1917



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   +YN+++ A +    +   + S+IV++ D NDN P F    Y   V
Sbjct: 1952 GIVTLAKSLDRETKAMYNVTIQALDQGTPQLMGIASLIVNVQDINDNPPEFASKLYFAKV 2011

Query: 78   SEAAPIGALV 87
             E   +G  V
Sbjct: 2012 PEIYAVGTEV 2021



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +   +PLD E    + L+V   +      +    VIV + D ND+ P F      G V
Sbjct: 292 GSITLNEPLDRETIEEHVLTVMVKDQGTPAKRNYARVIVTVHDHNDHAPEFISEIIQGKV 351

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E++PIG  V+        + A D+D   NA +
Sbjct: 352 YESSPIGTAVVQ-------VCAIDRDRGENAKI 377



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V
Sbjct: 1643 GWISTLVQLDKEKQPEYKFQVVATDNGNPKHFARTSVHVKLKDYNDNAPAFVDDRYEATV 1702

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +E A  G +V+   ++       DKD++ N
Sbjct: 1703 NEDALPGTVVVKLITV-------DKDTDVN 1725


>gi|380020280|ref|XP_003694018.1| PREDICTED: LOW QUALITY PROTEIN: fat-like cadherin-related tumor
            suppressor homolog [Apis florea]
          Length = 4753

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 76/97 (78%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G+++ K  LDYE T+ YNL++ ATNMA AKA C+VIVH+LDRNDN P F Q  Y+
Sbjct: 1782 VNPSTGIIVIKNELDYEKTKFYNLTIAATNMASAKAHCNVIVHVLDRNDNAPRFLQAAYS 1841

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            G +SE A IG+LVLTNTS PLVI+AED DSE NALL+
Sbjct: 1842 GEISEGATIGSLVLTNTSTPLVIKAEDADSELNALLN 1878



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P FTQ +Y   VS
Sbjct: 2308 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFTQDSYNISVS 2367

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EAAP G  VL        + + D D++ N
Sbjct: 2368 EAAPFGTSVLR-------VSSRDNDTDIN 2389



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G+L T   LD E    Y L+V+A +   A    ++   V ++++D NDN P F Q     
Sbjct: 474 GMLYTAVNLDAEKKAFYTLTVSAVDQGNAGTRKQSSAKVKINVVDTNDNDPTFEQSEMEV 533

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ E  P G  V+        I A+D+DS  NA +
Sbjct: 534 WIDENEPAGTSVVK-------ITAKDRDSGENAYI 561



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  K+ LD+EA   ++ +V A +       +   V V ++D NDN P F Q +
Sbjct: 2409 IDPEEGVIFLKRSLDHEAHESHHFTVIAIDRGVPSLSSTAHVWVTVIDMNDNPPKFEQPS 2468

Query: 73   YTGYVSEAAPIGALV 87
            YT  +SE A  G  V
Sbjct: 2469 YTCSLSEHAERGQFV 2483



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++  + LD+E  R Y L++ A +  G   +    +V + ++D NDN P F++++Y   
Sbjct: 3348 GVIIIAEQLDFERARDYFLTIQAVD-GGIPPLSNHATVNITVIDSNDNAPIFSEVSYRAS 3406

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E A IG  V+        + A D DSE N 
Sbjct: 3407 IREDAKIGEKVIQ-------VFANDLDSEENG 3431



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            VLL KK LD+E    YNL++  T+   + AV  ++V+++D ND+ P FT+  Y   +SE 
Sbjct: 1481 VLLAKK-LDWETQNFYNLTIRVTDSVDS-AVTQLLVNVIDINDHRPEFTESVYHVDISEN 1538

Query: 81   APIGALVL 88
               G  +L
Sbjct: 1539 VEKGEKIL 1546



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G ++   PLD E    Y L V A + +G   + S +   + +LD NDN P F+  NYT  
Sbjct: 3453 GQIIIVAPLDREEIGNYVLEVHARD-SGIPVLSSFVMVNIEVLDANDNPPLFSLSNYTAV 3511

Query: 77   VSEAAPIGALVL 88
            V E  P+G  VL
Sbjct: 3512 VQEDKPLGHTVL 3523



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ TK+ LDYE   R Y L V  ++       +A   + V + D NDN P F +++ TG
Sbjct: 580 GIVRTKQVLDYETMKREYLLHVRVSDWGMPFRRQAEMRLHVKVRDVNDNRPQFERIDCTG 639

Query: 76  YVSEAAPIGALVLTNTSLPL 95
           +V     IG+ ++T +++  
Sbjct: 640 HVPRYVSIGSEIITVSAIDF 659



 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T+K L+ E  ++Y + V AT+  G      V V + D NDN+P F    Y   +
Sbjct: 2620 GEIVTRKKLNREEQKLYEIPVMATDGGGRSGFVMVRVKVGDENDNSPVFLLREYKASI 2677



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V ILD NDN PY  +  Y   +
Sbjct: 3038 GEVYVAKSLDRETIDRYELEIVGTD---GKYVFKTRVTVQILDVNDNPPYCLRYRYREIL 3094

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  G  VLT       + A D D E NA L
Sbjct: 3095 SEGSHPGTYVLT-------VLATDYDDEPNAKL 3120



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YN+++ A +    +  ++ S+IV++ D NDN P F    Y   V
Sbjct: 3243 GIVTLGKPLDRETKAMYNVTIQALDQGTPQLMSMTSLIVNVQDINDNPPEFASKIYFSKV 3302

Query: 78   SEAAPIGALV 87
             E   +G  V
Sbjct: 3303 PEIYAVGTEV 3312



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E    Y+L+    +       CS  + IL  D NDN P FT
Sbjct: 3131 KFSLDKETGVLKTIGQLDRETQAKYSLTAHVQDRDKPSWECSSQLEILISDLNDNAPKFT 3190

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   +G LV
Sbjct: 3191 MQTYSATLPEDVEVGTLV 3208



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + TK  LD E+ R Y L+V A +       +   V V +LD+NDNTP      Y   V
Sbjct: 1166 GNIKTKAVLDVESKRGYWLTVYAQDHGVVPLSSSLQVYVEVLDKNDNTPLTEVPVYYPSV 1225

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
             E +P G  VL        IRA D+D
Sbjct: 1226 LENSPAGVSVLQ-------IRAFDRD 1244



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 13/89 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  +++ L++ A +  G  ++ S   VI+ ++D N+N   P F     +
Sbjct: 1059 GTIRITQSLDFEERQMHTLTIVARDR-GEPSLSSETMVIIDVVDVNENAHAPVFDDFVVS 1117

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              V E  P+G LV T       +RA+D D
Sbjct: 1118 ASVFENQPVGTLVTT-------VRAKDAD 1139



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 28  LDYE-ATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           LD E AT+ YNL++ A +    +      V VH+ D NDN P F++  Y   V E API 
Sbjct: 376 LDRETATQGYNLTLRAMDRGIPQRFSYKFVPVHLADLNDNAPVFSREIYEVKVPETAPIN 435

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             V+        ++  D D   NAL+
Sbjct: 436 TPVIQ-------LKVTDADEGRNALV 454



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V
Sbjct: 2934 GWISTLVQLDKEKQPEYKFQVVATDNGNPKHFARTSVHVKLKDYNDNPPAFVDDRYEATV 2993

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +E A  G +V+   ++       DKDS+ N
Sbjct: 2994 NEDALPGTVVVKLITV-------DKDSDVN 3016



 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
             ++P  G L  +K       +++ L + A +  GA    A   + ++I+   D  P F +
Sbjct: 2720 GINPNTGALFLQKSAISWENQLFELFIRAEDKGGATTHHADVPLSIYIMGPQDIPPLFER 2779

Query: 71   LNYTGYVSEAAPIGA-----LVLTNTSLPLVIRAEDKDS 104
                 ++SEA+P+G       ++TN+++   I + D+DS
Sbjct: 2780 KEDKFFISEASPVGTPITRLKIVTNSTVTYRIVSGDEDS 2818


>gi|340715254|ref|XP_003396132.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog
           [Bombus terrestris]
          Length = 3597

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 75/97 (77%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++ K  LDYE T+ YNL+V ATNMA AKA C+VIVH+LDRNDN P F Q  Y 
Sbjct: 623 MNPSTGIIVIKNELDYEKTKFYNLTVAATNMASAKAHCNVIVHVLDRNDNAPRFLQATYN 682

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           G +SE A IG+LVLTN+S PLVI+AED DSE NALL+
Sbjct: 683 GEISEGASIGSLVLTNSSTPLVIKAEDADSELNALLN 719



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P FTQ +Y   VS
Sbjct: 1149 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFTQDSYNISVS 1208

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EAAP G  VL        + + D D++ N
Sbjct: 1209 EAAPFGTSVLR-------VSSRDNDTDIN 1230



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  K+ LD+E    ++ +V A +       +   V V ++D NDN P F Q +
Sbjct: 1250 IDPEEGVIFLKRSLDHETHESHHFTVIAIDRGVPSLSSTAHVWVTVIDMNDNPPKFEQPS 1309

Query: 73   YTGYVSEAAPIGALV 87
            YT  +SE A  G  V
Sbjct: 1310 YTCSLSEHAERGQFV 1324



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   + LD+E  R Y L++ A +  G   +    +V + ++D NDN P F++++Y   
Sbjct: 2189 GVITIAEQLDFERARDYFLTIQAID-GGIPPLSNHATVNITVIDSNDNAPIFSEVSYRAS 2247

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E A IG  V         + A D DSE N 
Sbjct: 2248 IREDAKIGEKVTQ-------VFANDLDSEENG 2272



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +    PLD E    Y L V A + +G   + S +   + ILD NDN P F+  NYT  
Sbjct: 2294 GQITVAAPLDREEIGNYVLEVHARD-SGIPRLSSFVMVNIEILDANDNPPLFSLSNYTAV 2352

Query: 77   VSEAAPIGALVL 88
            V E  P+G  VL
Sbjct: 2353 VQEDKPLGHTVL 2364



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YN+++ A +    +  +V S+IV++ D NDN P F    Y   V
Sbjct: 2084 GIVTLGKPLDRETKAMYNVTIQAVDQGTPQLMSVTSLIVNVQDINDNPPEFASKVYFSKV 2143

Query: 78   SEAAPIGALV 87
             E   +G  V
Sbjct: 2144 PEIYAVGTEV 2153



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V ILD NDN PY  +  Y   +
Sbjct: 1879 GEVYVAKALDRETIDRYELEIVGTD---GKYVFKTRVTVQILDVNDNPPYCLRYRYREIL 1935

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  G  VLT       + A D D E NA L
Sbjct: 1936 SEGSHPGTYVLT-------VLATDYDDEPNAKL 1961



 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T+K L+ E  ++Y + V AT+  G      V V + D NDN+P F    Y   +
Sbjct: 1461 GEIVTRKKLNREEQKLYEIPVMATDGGGRSGFVIVRVKVGDENDNSPVFLLREYKASI 1518



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E    Y+L+    +       CS  + IL  D NDN P FT
Sbjct: 1972 KFSLDKETGVLKTVGQLDRETQAKYSLTAHVQDRDKPSWECSSQLEILVSDLNDNAPKFT 2031

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   +G LV
Sbjct: 2032 MQTYSATLPEDVEVGTLV 2049



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           VLL KK LD+E    YNL++  T+     A   ++V ++D ND+ P FT+  Y   +SE 
Sbjct: 322 VLLAKK-LDWETQNFYNLTIRVTDSVHT-AETQLLVTVIDINDHRPEFTENIYHVDISEN 379

Query: 81  APIGALVL 88
              G  +L
Sbjct: 380 VEKGEKIL 387



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + TK  LD E+ R Y L+V A +       +   V V +LDRNDNTP      Y   V
Sbjct: 7   GNIKTKVMLDVESKRGYWLTVYAQDHGVVPLSSSLQVYVEVLDRNDNTPLTEVPVYYPSV 66

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E +P G  VL        I+A D+D
Sbjct: 67  LENSPAGVSVLQ-------IQAFDRD 85



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V+E A  G 
Sbjct: 1783 LDKEKQPEYKFQVVATDNGNPKHFARTSVHVKLKDYNDNPPAFVDDRYEAAVNEDALPGT 1842

Query: 86   LVLTNTSLPLVIRAEDKDSETN 107
            +V+   ++       DKDS+ N
Sbjct: 1843 VVVKLITM-------DKDSDVN 1857



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
             ++P  G L  +K       +++ L + A +  GA    A   + ++I+   D  P F +
Sbjct: 1561 GINPDTGALFLQKSAMPWENQLFELFIRAEDKGGATTHHADVPLSIYIMGPQDIPPLFER 1620

Query: 71   LNYTGYVSEAAPIGALV-----LTNTSLPLVIRAEDKDS 104
                 ++SEA+PIG  +     +TNT++   I + D+DS
Sbjct: 1621 KEDKFFISEASPIGTPITRLKTVTNTTVTYRIVSGDEDS 1659



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 7    LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTA-TNMAGAKA--VCSVIVH- 57
            +F+IL P     + P  G + T     D E    Y L V A + M G +   V  VIV+ 
Sbjct: 924  VFSILNPTDMFVIGPTSGAIRTTGIRFDREVCEHYELIVEAKSQMPGKEKPRVAHVIVNV 983

Query: 58   -ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ILD NDN P F  L Y   VS  A  G ++         + A D DS  N 
Sbjct: 984  TILDINDNCPMFVNLPYYAVVSVDAQKGDVITK-------VHAVDMDSGDNG 1028


>gi|328790298|ref|XP_394631.4| PREDICTED: fat-like cadherin-related tumor suppressor homolog [Apis
           mellifera]
          Length = 3599

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 76/97 (78%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++ K  LDYE T+ YNL++ ATNMA AKA C+VIVH+LDRNDN P F Q  Y+
Sbjct: 628 VNPSTGIIVIKNELDYEKTKFYNLTIAATNMASAKAHCNVIVHVLDRNDNAPRFLQAVYS 687

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           G +SE A IG+LVLTNTS PLVI+AED DSE NALL+
Sbjct: 688 GEISEGATIGSLVLTNTSTPLVIKAEDADSELNALLN 724



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P FTQ +Y   VS
Sbjct: 1154 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFTQDSYNISVS 1213

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EAAP G  VL        + + D D++ N
Sbjct: 1214 EAAPFGTSVLR-------VSSRDNDTDIN 1235



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  K+ LD+EA   ++ +V A +       +   V V ++D NDN P F Q +
Sbjct: 1255 IDPEEGVIFLKRSLDHEAHESHHFTVIAIDRGVPSLSSTAHVWVTVIDMNDNPPKFEQPS 1314

Query: 73   YTGYVSEAAPIGALV 87
            YT  +SE A  G  V
Sbjct: 1315 YTCSLSEHAERGQFV 1329



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++  + LD+E  R Y L++ A +  G   +    +V + ++D NDN P F++++Y   
Sbjct: 2194 GVIIIAEQLDFERARDYFLTIQAVD-GGIPPLSNHATVNITVIDSNDNAPIFSEVSYRAS 2252

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E A IG  V+        + A D DSE N 
Sbjct: 2253 IREDAKIGEKVIQ-------VFANDLDSEENG 2277



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G ++   PLD E    Y L V A + +G   + S +   + +LD NDN+P F+  NYT  
Sbjct: 2299 GQIIVAAPLDREEIGNYVLEVHARD-SGIPVLSSFVMVNIEVLDANDNSPLFSLSNYTAV 2357

Query: 77   VSEAAPIGALVL 88
            V E  P+G  VL
Sbjct: 2358 VQEDKPLGHTVL 2369



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           VLL KK LD+E    YNL++  T+   + AV  ++V+++D ND+ P FT+  Y   +SE 
Sbjct: 327 VLLAKK-LDWETQNFYNLTIRVTDSVES-AVTQLLVNVIDINDHRPEFTESVYHVDISEN 384

Query: 81  APIGALVLTNTSLPLVIRAEDKDSETNAL 109
              G  +L        + A D+D +    
Sbjct: 385 VEKGERILE-------LHASDEDEDKKVF 406



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T+K L+ E  ++Y + V AT+  G      V V + D NDN+P F    Y   +
Sbjct: 1466 GEIVTRKKLNREEQKLYEIPVMATDGGGRSGFVMVRVKVGDENDNSPVFLLREYKASI 1523



 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V ILD NDN PY  +  Y   +
Sbjct: 1884 GEVYVAKSLDRETIDRYELEIVGTD---GKYVFKTRVTVQILDVNDNPPYCLRYRYREIL 1940

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  G  VLT       + A D D E NA L
Sbjct: 1941 SEGSHPGTYVLT-------VLATDYDDEPNAKL 1966



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YN+++ A +    +  ++ S+IV++ D NDN P F    Y   V
Sbjct: 2089 GIVTLGKPLDRETKAMYNVTIQALDQGTPQLMSMTSLIVNVQDINDNPPEFASKIYFSKV 2148

Query: 78   SEAAPIGALV 87
             E   +G  V
Sbjct: 2149 PEIYAVGTEV 2158



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E    Y+L+    +       CS  + IL  D NDN P FT
Sbjct: 1977 KFSLDKETGVLKTIGQLDRETQAKYSLTAHVQDRDKPSWECSSQLEILISDLNDNAPKFT 2036

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   +G LV
Sbjct: 2037 MQTYSATLPEDVEVGTLV 2054



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + TK  LD E+ R Y L+V A +       +   V V +LD+NDNTP      Y   V
Sbjct: 12  GNIKTKAVLDVESKRGYWLTVYAQDHGVVPLSSSLQVYVEVLDKNDNTPLTEVPVYYPSV 71

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E +P G  VL        IRA D+D
Sbjct: 72  LENSPAGVSVLQ-------IRAFDRD 90



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V
Sbjct: 1780 GWISTLVQLDKEKQPEYKFQVVATDNGNPKHFARTSVHVKLKDYNDNPPAFVDDRYEATV 1839

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +E A  G +V+   ++       DKDS+ N
Sbjct: 1840 NEDALPGTVVVKLITV-------DKDSDVN 1862



 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
             ++P  G L  +K       +++ L + A +  GA    A   + ++I+   D  P F +
Sbjct: 1566 GINPNTGALFLQKSAISWENQLFELFIRAEDKGGATTHHADVPLSIYIMGPQDIPPLFER 1625

Query: 71   LNYTGYVSEAAPIGA-----LVLTNTSLPLVIRAEDKDS 104
                 ++SEA+P+G       ++TN+++   I + D+DS
Sbjct: 1626 KEDKFFISEASPVGTPITRLKIVTNSTVTYRIVSGDEDS 1664


>gi|350417212|ref|XP_003491311.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog,
            partial [Bombus impatiens]
          Length = 4739

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 75/97 (77%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G+++ K  LDYE T+ YNL+V ATNMA A+A C+VIVH+LDRNDN P F Q  Y 
Sbjct: 1765 MNPSTGIIVIKNELDYEKTKFYNLTVAATNMASAEAHCNVIVHVLDRNDNAPRFLQATYN 1824

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            G +SE A IG+LVLTN+S PLVI+AED DSE NALL+
Sbjct: 1825 GEISEGASIGSLVLTNSSTPLVIKAEDADSELNALLN 1861



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P FTQ +Y   VS
Sbjct: 2291 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFTQDSYNISVS 2350

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EAAP G  VL        + + D D++ N
Sbjct: 2351 EAAPFGTSVLR-------VSSRDNDTDIN 2372



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G+L T   LD E    Y L+V+A +   A    ++   V ++++D NDN P F Q     
Sbjct: 457 GMLYTAVNLDAEKKAFYTLTVSAVDQGNAGTRKQSSAKVKINVVDTNDNDPTFEQSEMEV 516

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ E  P G  V+        I A+D+DS  NA +
Sbjct: 517 WIDENEPAGTSVVK-------ITAKDRDSGENAYI 544



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  K+ LD+E    ++ +V A +       +   V V ++D NDN P F Q +
Sbjct: 2392 IDPEEGVIFLKRSLDHETHESHHFTVIAIDRGVPSLSSTAHVWVTVIDMNDNPPKFEQPS 2451

Query: 73   YTGYVSEAAPIGALV 87
            YT  +SE A  G  V
Sbjct: 2452 YTCSLSEHAERGQFV 2466



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ TK+ LDYE   R Y L V  ++       +A   + V + D NDN P F +++ TG
Sbjct: 563 GIVKTKQVLDYETMKREYLLHVRVSDWGLPYRRQAEMQLHVKVRDVNDNRPQFERIDCTG 622

Query: 76  YVSEAAPIGALVLTNTSLPL 95
           +V    PIG+ ++T +++  
Sbjct: 623 HVPRYVPIGSEIITVSAIDF 642



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   + LD+E  R Y L++ A +  G   +    +V + ++D NDN P F++++Y   
Sbjct: 3331 GVITIAEQLDFERARDYFLTIQAID-GGIPPLSNHATVNITVIDSNDNAPIFSEVSYRAS 3389

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E A IG  V         + A D DSE N 
Sbjct: 3390 IREDAKIGEKVTQ-------VFANDLDSEENG 3414



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YN+++ A +    +  +V S+IV++ D NDN P F    Y   V
Sbjct: 3226 GIVTLGKPLDRETKAMYNVTIQAVDQGTPQLMSVTSLIVNVQDINDNPPEFASKVYFSKV 3285

Query: 78   SEAAPIGALV 87
             E   +G  V
Sbjct: 3286 PEIYAVGTEV 3295



 Score = 41.2 bits (95), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T+K L+ E  ++Y + V AT+  G      V V + D NDN+P F    Y   +
Sbjct: 2603 GEIVTRKKLNREEQKLYEIPVMATDGGGRSGFVIVRVKVGDENDNSPVFLLREYKASI 2660



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L +  T+    K V    V V ILD NDN PY  +  Y   +
Sbjct: 3021 GEVYVAKALDRETIDRYELEIVGTD---GKYVFKTRVTVQILDVNDNPPYCLRYRYREIL 3077

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  G  VLT       + A D D E NA L
Sbjct: 3078 SEGSHPGTYVLT-------VLATDYDDEPNAKL 3103



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 13/89 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN--TPYFTQLNYT 74
            G + T + LD+E  +++ L++ A +  G  ++ S   VI+ ++D N+N   P F     +
Sbjct: 1042 GTIRTTQSLDFEERQVHTLTIVAKDR-GEPSLSSETMVIIEMVDVNENLHAPVFDDFVVS 1100

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              V E  PIG LV T       +RA+D D
Sbjct: 1101 ASVFENQPIGTLVTT-------VRAKDAD 1122



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E    Y+L+    +       CS  + IL  D NDN P FT
Sbjct: 3114 KFSLDKETGVLKTVGQLDRETQAKYSLTAHVQDRDKPSWECSSQLEILVSDLNDNAPKFT 3173

Query: 70   QLNYTGYVSEAAPIGALV 87
               Y+  + E   +G LV
Sbjct: 3174 MQTYSATLPEDVEVGTLV 3191



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +     LD E    Y L V A + +G   + S +   + ILD NDN P F+  NYT  
Sbjct: 3436 GQITVAASLDREEIGNYVLEVHARD-SGIPRLSSFVMVNIEILDANDNPPLFSLSNYTAV 3494

Query: 77   VSEAAPIGALVL 88
            V E  P+G  VL
Sbjct: 3495 VQEDKPLGHTVL 3506



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            VLL KK LD+E    YNL++  T+     A   ++V ++D ND+ P FT+  Y   +SE 
Sbjct: 1464 VLLAKK-LDWETQNFYNLTIRVTDSVHT-AETQLLVTVIDINDHRPEFTENIYHVDISEN 1521

Query: 81   APIGALVL 88
               G  +L
Sbjct: 1522 VEKGEKIL 1529



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + TK  LD E+ R Y L+V A +       +   V V +LDRNDNTP      Y   V
Sbjct: 1149 GNIKTKVMLDVESKRGYWLTVYAQDHGVVPLSSSLQVYVEVLDRNDNTPLTEVPVYYPSV 1208

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
             E +P G  VL        I+A D+D
Sbjct: 1209 LENSPAGVSVLQ-------IQAFDRD 1227



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 28  LDYE-ATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           LD E A + YNL++ AT+    +  +   V VH+ D NDN P F++  Y   V E API 
Sbjct: 359 LDRETAVQGYNLTLRATDRGVPQRYSYKFVPVHLADLNDNAPVFSREIYEVKVPETAPIN 418

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             V+        ++  D D   NAL+
Sbjct: 419 TPVIR-------LKVTDADEGKNALV 437



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y   V AT+    K  A  SV V + D NDN P F    Y   V+E A  G 
Sbjct: 2925 LDKEKQPEYKFQVVATDNGNPKHFARTSVHVKLKDYNDNPPAFVDDRYEAAVNEDALPGT 2984

Query: 86   LVLTNTSLPLVIRAEDKDSETN 107
            +V+   ++       DKDS+ N
Sbjct: 2985 VVVKLITM-------DKDSDVN 2999



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
             ++P  G L  +K       +++ L + A +  GA    A   + ++I+   D  P F +
Sbjct: 2703 GINPDTGALFLQKSAMPWENQLFELFIRAEDKGGATTHHADVPLSIYIMGPQDIPPLFER 2762

Query: 71   LNYTGYVSEAAPIGALV-----LTNTSLPLVIRAEDKDS 104
                 ++SEA+PIG  +     +TNT++   I + D+DS
Sbjct: 2763 KEDKFFISEASPIGTPITRLKTVTNTTVTYRIVSGDEDS 2801



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 17/112 (15%)

Query: 7    LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTA-TNMAGAKA--VCSVIVHI 58
            +F+IL P     + P  G + T     D E    Y L V A + M G +   V  VIV+I
Sbjct: 2066 VFSILNPTDMFVIGPTSGAIRTTGIRFDREVCEHYELIVEAKSQMPGKEKPRVAHVIVNI 2125

Query: 59   --LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              LD NDN P F  L Y   VS  A  G ++         + A D DS  N 
Sbjct: 2126 TILDINDNCPMFVNLPYYAVVSVDAQKGDVITK-------VHAVDMDSGDNG 2170


>gi|270002748|gb|EEZ99195.1| cadherin [Tribolium castaneum]
          Length = 4637

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 73/96 (76%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  GV+ T+K LDYE  R YNL+V  TNMA A A C+VI+HILD+NDN P F Q NY+
Sbjct: 1772 ISPSTGVITTQKYLDYEVNRFYNLTVITTNMASASATCNVIIHILDKNDNVPRFLQANYS 1831

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI +L+LTNTS PLVI+A D DSE NALL
Sbjct: 1832 GTISEAAPISSLILTNTSEPLVIKAFDADSEMNALL 1867



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQ 70
           ++P  G+L T  PLD E+ + Y+L+V+A +   A    ++   V +++ D NDN P F +
Sbjct: 424 INPETGMLYTAVPLDAESKQFYSLTVSAIDQGNAGTRKQSSAKVKIYVEDTNDNDPIFDE 483

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 + E  P G  V T       + A+D+D   NA +
Sbjct: 484 SEKFVPIDENLPAGTSVTT-------VHAKDRDRGENAYI 516



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFT 69
            K A++   GV+     LDYE  + Y L++ A +  +     V +V + + D NDN P F+
Sbjct: 3273 KFAINNKTGVISIADMLDYERAKDYFLTIQAVDGGIPPLSNVATVNITVTDCNDNAPVFS 3332

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            QL+Y+  + E A IG  +L        + A D DS+ N 
Sbjct: 3333 QLSYSARIREDAQIGDKILQ-------VIATDLDSDRNG 3364



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LD+E    Y L + AT+ ++G  A   V + + D ND  P FTQ NY   +S
Sbjct: 2241 GVISVVDELDFEQQPQYELLIRATDSVSGVYAEVPVSIVLQDVNDCPPEFTQENYNVSIS 2300

Query: 79   EAAPIGALVLT 89
            EAA  G  VLT
Sbjct: 2301 EAAQFGTPVLT 2311



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  + LDYEA   Y+L+++ ++         + V ++D ND+ P F++  Y   +SE
Sbjct: 1469 GNILLAQKLDYEAQNEYSLNISVSDSVHT-VYTQLNVSVIDINDHRPEFSESTYKVEISE 1527

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSET 106
            A P+      NT + L +RA DKD ++
Sbjct: 1528 AVPV------NTEI-LRLRATDKDDDS 1547



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
            ++F I K +     G L TK  LD E  ++Y + + AT+  G     +V + + D NDN 
Sbjct: 2545 EIFKIDKTS-----GKLTTKVRLDREKQKLYEVLIMATDGGGKSGFITVRIKVADENDNA 2599

Query: 66   PYF 68
            PYF
Sbjct: 2600 PYF 2602



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDN--TPYFTQLNYTG 75
            G + T KPLD+E  ++++L   A++       +  SV ++++D N+N   P F+ +   G
Sbjct: 1013 GTIRTTKPLDFEERQVHSLIAFASDKGNPSLSSEASVTIYVVDVNENMHAPLFSDMVLNG 1072

Query: 76   YVSEAAPIGALVL 88
             V E  P+G +V+
Sbjct: 1073 TVKENQPVGTVVM 1085



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YNL+V A +    +  +V ++ V++ D NDN P F    Y   V
Sbjct: 3176 GIVTLAKPLDREIRAVYNLTVQAVDQGTPQLSSVSTLTVNVQDINDNPPEFANKYYFAVV 3235

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G  V+        + A  KD+  NA
Sbjct: 3236 PEIDAVGTEVVK-------VLATSKDTGVNA 3259



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   K LD E    Y+L V  T+      V +V V+ILD NDN PY  Q  Y   +SE
Sbjct: 2971 GEIYVAKGLDREKVPHYDLQVLVTD-GMFTDVTNVSVNILDANDNPPYCLQYRYRQVLSE 3029

Query: 80   AAPIGALVLT 89
                G+ VL+
Sbjct: 3030 GILPGSFVLS 3039



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G +   + LD E T  Y L V A +  G   +       + I D NDN P F Q 
Sbjct: 3381 IDPDSGYVSVAEELDRETTSNYVLEVLARD-NGVPVLSRQTLLNIEISDANDNPPIFAQT 3439

Query: 72   NYTGYVSEAAPIG 84
            NYT  + E  PIG
Sbjct: 3440 NYTTVIQEDKPIG 3452



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-------AVCSVIVHILDRNDNTPYFTQLN 72
           GVL     LD E   +Y L + AT+  G         +   V + I D NDN P F+   
Sbjct: 903 GVLAVSNTLDRERQDLYELRIRATDGGGKGPDNPPLYSEALVRISIDDINDNAPKFSLPA 962

Query: 73  YTGYVSEAAPIGALV 87
           YT  + E  P G++V
Sbjct: 963 YTVKIREDIPKGSVV 977



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 20  GVLLTKKPLDYEATRI-YNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T   LDYE+ R  Y L V A++       +    + V + D NDN P F +++  G
Sbjct: 535 GIIKTTSLLDYESMRREYVLRVRASDWGLPYRRQTEMQLTVKVQDVNDNRPQFEKVDCIG 594

Query: 76  YVSEAAPIGALVLT 89
            +  +  IG+ ++T
Sbjct: 595 VIPRSISIGSEIIT 608



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++ T   LD E    + L+V A +        SV V+I  L+ NDN P   +  Y   +
Sbjct: 1120 GIIRTLAVLDIETKSHFWLTVFAQDHGVVPLYSSVEVYIEVLNENDNVPLSDEAVYYPTI 1179

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E +P G+ VL        IRA DKD + N
Sbjct: 1180 LEDSPAGSSVLQ-------IRASDKDKDPN 1202



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD EA   Y   VTAT+    K  A  +VIV + D ND+   F +  Y   V
Sbjct: 2867 GWISTLVKLDKEAKMEYKFYVTATDNGTPKHSARTTVIVRLKDYNDSPTLFKKRFYESSV 2926

Query: 78   SEAAPIGALVLT 89
            +E A  G ++LT
Sbjct: 2927 NEDALPGTVLLT 2938


>gi|189234730|ref|XP_973752.2| PREDICTED: similar to fat2 CG7749-PA [Tribolium castaneum]
          Length = 4676

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/96 (63%), Positives = 73/96 (76%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  GV+ T+K LDYE  R YNL+V  TNMA A A C+VI+HILD+NDN P F Q NY+
Sbjct: 1754 ISPSTGVITTQKYLDYEVNRFYNLTVITTNMASASATCNVIIHILDKNDNVPRFLQANYS 1813

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI +L+LTNTS PLVI+A D DSE NALL
Sbjct: 1814 GTISEAAPISSLILTNTSEPLVIKAFDADSEMNALL 1849



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQ 70
           ++P  G+L T  PLD E+ + Y+L+V+A +   A    ++   V +++ D NDN P F +
Sbjct: 424 INPETGMLYTAVPLDAESKQFYSLTVSAIDQGNAGTRKQSSAKVKIYVEDTNDNDPIFDE 483

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 + E  P G  V T       + A+D+D   NA +
Sbjct: 484 SEKFVPIDENLPAGTSVTT-------VHAKDRDRGENAYI 516



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFT 69
            K A++   GV+     LDYE  + Y L++ A +  +     V +V + + D NDN P F+
Sbjct: 3312 KFAINNKTGVISIADMLDYERAKDYFLTIQAVDGGIPPLSNVATVNITVTDCNDNAPVFS 3371

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            QL+Y+  + E A IG  +L        + A D DS+ N 
Sbjct: 3372 QLSYSARIREDAQIGDKILQ-------VIATDLDSDRNG 3403



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LD+E    Y L + AT+ ++G  A   V + + D ND  P FTQ NY   +S
Sbjct: 2280 GVISVVDELDFEQQPQYELLIRATDSVSGVYAEVPVSIVLQDVNDCPPEFTQENYNVSIS 2339

Query: 79   EAAPIGALVLT 89
            EAA  G  VLT
Sbjct: 2340 EAAQFGTPVLT 2350



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  + LDYEA   Y+L+++ ++         + V ++D ND+ P F++  Y   +SE
Sbjct: 1451 GNILLAQKLDYEAQNEYSLNISVSDSVHT-VYTQLNVSVIDINDHRPEFSESTYKVEISE 1509

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSET 106
            A P+   +L        +RA DKD ++
Sbjct: 1510 AVPVNTEILR-------LRATDKDDDS 1529



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
            ++F I K +     G L TK  LD E  ++Y + + AT+  G     +V + + D NDN 
Sbjct: 2584 EIFKIDKTS-----GKLTTKVRLDREKQKLYEVLIMATDGGGKSGFITVRIKVADENDNA 2638

Query: 66   PYF 68
            PYF
Sbjct: 2639 PYF 2641



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDN--TPYFTQLNYTG 75
            G + T KPLD+E  ++++L   A++       +  SV ++++D N+N   P F+ +   G
Sbjct: 1013 GTIRTTKPLDFEERQVHSLIAFASDKGNPSLSSEASVTIYVVDVNENMHAPLFSDMVLNG 1072

Query: 76   YVSEAAPIGALVL 88
             V E  P+G +V+
Sbjct: 1073 TVKENQPVGTVVM 1085



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E   +YNL+V A +    +  +V ++ V++ D NDN P F    Y   V
Sbjct: 3215 GIVTLAKPLDREIRAVYNLTVQAVDQGTPQLSSVSTLTVNVQDINDNPPEFANKYYFAVV 3274

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G  V+        + A  KD+  NA
Sbjct: 3275 PEIDAVGTEVVK-------VLATSKDTGVNA 3298



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   K LD E    Y+L V  T+      V +V V+ILD NDN PY  Q  Y   +SE
Sbjct: 3010 GEIYVAKGLDREKVPHYDLQVLVTD-GMFTDVTNVSVNILDANDNPPYCLQYRYRQVLSE 3068

Query: 80   AAPIGALVLT 89
                G+ VL+
Sbjct: 3069 GILPGSFVLS 3078



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G +   + LD E T  Y L V A +  G   +       + I D NDN P F Q 
Sbjct: 3420 IDPDSGYVSVAEELDRETTSNYVLEVLARD-NGVPVLSRQTLLNIEISDANDNPPIFAQT 3478

Query: 72   NYTGYVSEAAPIG 84
            NYT  + E  PIG
Sbjct: 3479 NYTTVIQEDKPIG 3491



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-------AVCSVIVHILDRNDNTPYFTQLN 72
           GVL     LD E   +Y L + AT+  G         +   V + I D NDN P F+   
Sbjct: 903 GVLAVSNTLDRERQDLYELRIRATDGGGKGPDNPPLYSEALVRISIDDINDNAPKFSLPA 962

Query: 73  YTGYVSEAAPIGALV 87
           YT  + E  P G++V
Sbjct: 963 YTVKIREDIPKGSVV 977



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 20  GVLLTKKPLDYEATRI-YNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T   LDYE+ R  Y L V A++       +    + V + D NDN P F +++  G
Sbjct: 535 GIIKTTSLLDYESMRREYVLRVRASDWGLPYRRQTEMQLTVKVQDVNDNRPQFEKVDCIG 594

Query: 76  YVSEAAPIGALVLT 89
            +  +  IG+ ++T
Sbjct: 595 VIPRSISIGSEIIT 608



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++ T   LD E    + L+V A +        SV V+I  L+ NDN P   +  Y   +
Sbjct: 1120 GIIRTLAVLDIETKSHFWLTVFAQDHGVVPLYSSVEVYIEVLNENDNVPLSDEAVYYPTI 1179

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E +P G+ VL        IRA DKD + N
Sbjct: 1180 LEDSPAGSSVLQ-------IRASDKDKDPN 1202



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD EA   Y   VTAT+    K  A  +VIV + D ND+   F +  Y   V
Sbjct: 2906 GWISTLVKLDKEAKMEYKFYVTATDNGTPKHSARTTVIVRLKDYNDSPTLFKKRFYESSV 2965

Query: 78   SEAAPIGALVLT 89
            +E A  G ++LT
Sbjct: 2966 NEDALPGTVLLT 2977


>gi|242006694|ref|XP_002424182.1| protocadherin fat 2 precursor, putative [Pediculus humanus corporis]
 gi|212507523|gb|EEB11444.1| protocadherin fat 2 precursor, putative [Pediculus humanus corporis]
          Length = 4716

 Score =  120 bits (302), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 73/96 (76%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+LTK  LDYE  ++YNL+V A N+A A+  C +I+H+LDRNDN P F Q  Y 
Sbjct: 1808 INPSVGVILTKGILDYETKKLYNLTVEAVNLASARVTCQIIIHVLDRNDNAPRFLQAFYQ 1867

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE++PIG+LVLT  + PLVI+AED+DSE NALL
Sbjct: 1868 GNISESSPIGSLVLTTDNSPLVIKAEDEDSELNALL 1903



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++   KPLD E    YNLS+ A +    +   +  ++V +LD NDN P F    
Sbjct: 3261 IEPDSGIVTLLKPLDREQKATYNLSIKAFDQGTPQLSQITKLLVLVLDINDNPPEFAYKT 3320

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y G + E+ PIG  ++        + A  KD+  NA
Sbjct: 3321 YYGTIPESEPIGTEIVR-------VLATSKDTGINA 3349



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E    YN  + AT+    K  A  SV V + D NDN P FT  +YTG V
Sbjct: 2957 GWIRTLVPLDKEKNPEYNFQIMATDNGIQKHFARTSVHVKLKDYNDNPPVFTSEHYTGSV 3016

Query: 78   SEAAPIGALVLTNTSLPL 95
            SE A  G +V+   +L L
Sbjct: 3017 SEDALPGTVVIQLNTLDL 3034



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYV 77
            G L+   PLD E    Y L + AT+    +   SV+V+  I D NDN P F+Q NYT  V
Sbjct: 3476 GYLIVNAPLDREMISSYVLEIQATDHGIPELSSSVLVNLEISDFNDNPPLFSQDNYTAVV 3535

Query: 78   SEAAPIGALVL 88
             E  P G ++L
Sbjct: 3536 QEDKPPGFVIL 3546



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV-- 77
            GV+ TK+ LD E  ++Y + VTA++  G     +V V + D NDN P F    Y   +  
Sbjct: 2644 GVIRTKRHLDREIKKLYEIPVTASDQGGRLGFLNVRVKVRDENDNVPVFQVSEYKAAIPG 2703

Query: 78   SEAAPIGALVLTNTSLPLVIRAE 100
            +    +G L +  T L   I AE
Sbjct: 2704 NFTVELGFLKVKATDLDEDINAE 2726



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G +  KK LD+E    ++ +V A ++      +   V V+++D NDN P F Q +
Sbjct: 2433 IDPEEGTIYLKKSLDHEVNSYHHFTVVANDLGVPSLSSTSHVWVNVIDMNDNPPKFEQPS 2492

Query: 73   YTGYVSEAAPIGALV-LTNTSLPLVIRAEDKDSETNALLDGSTN 115
            Y   +SE A  G  + +   S P  +   D+D    A++ G+ N
Sbjct: 2493 YNCLLSEHAVRGQFITVITASDPDFV---DRDKLYYAIVGGNEN 2533



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQ 70
           L+   G+L T K LD E    Y L+V+A +    +    +   V +++LD NDN P F  
Sbjct: 489 LNSETGMLYTAKILDAEEKSFYTLTVSAIDQGTVRGRKQSSAKVKINVLDMNDNDPTFDT 548

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 + E  P G  VL        + A+DKD   N+ +
Sbjct: 549 SEMNVVIDENEPAGTTVLK-------VTAKDKDFGENSYI 581



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   +PLD+E  + Y L++ AT+  G   +    +V + + D NDN P F Q++Y+  
Sbjct: 3371 GVVKIVEPLDFERAKDYLLTIQATD-GGVPPLSNHATVNITVTDSNDNPPVFIQMSYSAT 3429

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E   +G  +L        + A D DS  N  +
Sbjct: 3430 IREDTQVGDKILQ-------VTANDLDSNLNGQI 3456



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            AL+   GV+     LDYE  + Y L++ AT+ + G  A   V V + D ND  P F+Q  
Sbjct: 2326 ALNFNTGVIRVVDELDYETKKDYELTIRATDGVTGVFAEVLVNVLVEDVNDCPPEFSQDL 2385

Query: 73   YTGYVSEAAPIGALVL 88
            Y   +SEA P G  + 
Sbjct: 2386 YNISISEATPFGTSIF 2401



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E    YNL VTAT+    K V S  V + ++D NDN PY  +  Y   +
Sbjct: 3061 GEIYVAKPLDRELISHYNLEVTATD---GKFVTSTKVSIEVIDANDNPPYCMKYRYRHIL 3117

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE    G  V +       I A D D ++ + L
Sbjct: 3118 SEGVLPGTYVTS-------IEAVDIDEQSTSNL 3143



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   +PLD E +  +N+ V A + A     A+  V++ +LD NDN P F    Y   +
Sbjct: 2850 GQLSLARPLDREESNFHNIGVLAESKANPSLAALTEVLLKVLDENDNAPRFESTPYECTI 2909

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +E    G+ +L        + A D DS  N
Sbjct: 2910 AENIEEGSSILR-------VIAHDNDSGNN 2932



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    G L T  PLD E    Y L     +    K  CS  V+IL  D NDN P F 
Sbjct: 3154 KFSLDKTLGHLKTALPLDREEQSKYQLVAHVQDRDKPKWECSSEVYILISDLNDNPPQFE 3213

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            +  Y+  + E   IG LV         + A DKD
Sbjct: 3214 KEMYSATLPEDVQIGTLVTK-------LHATDKD 3240



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 20  GVLLTKKPLDYEATRI-YNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T + LDYE+ R  Y L + A++       +    V + + D NDN P F ++  TG
Sbjct: 600 GIIRTTQVLDYESMRRNYILRIRASDWGLPFRRQTEMQVKIRLKDINDNRPQFEKVECTG 659

Query: 76  YVSEAAPIGALVLT 89
           +V     IG  +LT
Sbjct: 660 HVPRYVAIGTEILT 673



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LD+E    YNL+++ T+         V V +++ ND+ P F++  Y   +SE
Sbjct: 1505 GNILLAKTLDWETQHYYNLTISVTD-GFHSTYGQVYVMVINSNDHRPKFSKNTYLVDISE 1563

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                G  +L      L+   ED+D +
Sbjct: 1564 NVEPGTEILE-----LIASDEDEDDK 1584



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--------VIVHILDRNDNT 65
            ++ P  G+L     LD E   +Y L + A +  G K            V +HI D NDN 
Sbjct: 963  SVDPVQGILFVSSGLDRERQDLYELKIRAVD-GGEKDTGKPSLYSDAIVQIHIDDVNDNA 1021

Query: 66   PYFTQLNYTGYVSE 79
            P F   +YT  + E
Sbjct: 1022 PVFALPSYTVRIRE 1035


>gi|345497484|ref|XP_001600457.2| PREDICTED: fat-like cadherin-related tumor suppressor homolog
            [Nasonia vitripennis]
          Length = 4817

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 76/99 (76%), Gaps = 2/99 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++ LDYE  + YNLS+ AT+M+GA A C+VIVH+LDRNDN P F Q  YT
Sbjct: 1797 INPSTGVISTQERLDYEDVKFYNLSIAATSMSGASAQCNVIVHVLDRNDNAPQFVQAVYT 1856

Query: 75   GYVSEAAPIGALVLT--NTSLPLVIRAEDKDSETNALLD 111
            G VSEAA IG+LV +  +TS PLVI+AED DSE NALL+
Sbjct: 1857 GQVSEAASIGSLVFSANSTSSPLVIKAEDADSELNALLN 1895



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G+L T  PLD E    Y L+V+A +   A    ++   V ++++D NDN P F +     
Sbjct: 479 GMLYTAVPLDAETKAFYTLTVSAVDQGNAGTRKQSSAKVKIYVIDTNDNDPEFEKSEMLV 538

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+ E  P G      TS+  V+ A DKDS  NA +
Sbjct: 539 YLDENEPAG------TSVCKVV-ARDKDSGENAYI 566



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + Y L+V AT+ ++G  A   V + +LD ND  P F+Q +Y   +S
Sbjct: 2326 GVIYVVDELDYEQKKQYELTVRATDSVSGVYAEVLVSILVLDVNDCPPEFSQDSYNISIS 2385

Query: 79   EAAPIGALVL 88
            EAA  G  +L
Sbjct: 2386 EAALFGTELL 2395



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++   KPLD E   +YN+S+ A +    +  +V  +IV++ D NDN P FT   
Sbjct: 3264 ISPDSGIVTLAKPLDRETKAMYNVSIQAMDQGTPQLSSVTFLIVNVQDINDNPPEFTSKY 3323

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E   +G  V
Sbjct: 3324 YFARVPEIDAVGTEV 3338



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  K+ LD+E    ++ +V A +       +   V + ++D NDN P F Q +
Sbjct: 2432 VDPEEGIVYLKRSLDHETADSHHFTVVAMDRGVPSLSSTAHVWLTVIDMNDNPPKFEQSS 2491

Query: 73   YTGYVSEAAPIGALV 87
            Y  ++SE A  G  V
Sbjct: 2492 YNCFLSEEAERGQFV 2506



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L V  T+    K V    VIV +LD NDN PY  +  Y   +
Sbjct: 3064 GQVYVAKALDRETRDRYELLVVGTD---GKFVFETRVIVQVLDVNDNPPYCLKYRYREVL 3120

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  G+ VLT       + A D D E NA L
Sbjct: 3121 SEGSHPGSYVLT-------VLATDYDDEPNAKL 3146



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +    PLD E    Y L V A +         VIV+I  +D NDN P F Q NYT  V
Sbjct: 3479 GQITVLAPLDREQIASYVLEVHAKDNGIPTLSNYVIVNIEVIDANDNPPLFAQNNYTTVV 3538

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  P+G  VL  T         D D+E NA
Sbjct: 3539 QEDKPLGYAVLKFT-------VTDADAEPNA 3562



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++TKK LD E  +++ + V A++  G      V V + D NDN+P F    Y     +
Sbjct: 2643 GDIVTKKSLDREKHKLFEIPVMASDGGGKSGFVIVRVKVTDENDNSPVFLLKEY-----K 2697

Query: 80   AAPIGALVLTNTSLPLVIRAEDKD 103
            A+  G L L   S  L ++A D D
Sbjct: 2698 ASIYGNLTL--NSAFLKVKALDAD 2719



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   + LDYE  + Y L++ A +  G   +    +V + +LD NDN P F+Q +Y   
Sbjct: 3374 GVVSIAEQLDYERAKDYFLTIQAID-GGVPPLTNHATVNITVLDSNDNAPMFSQASYRAS 3432

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E A  G  V+        + A D DS  N 
Sbjct: 3433 IREDAKAGEKVVQ-------VFANDLDSNENG 3457



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + TK  LD EA   Y L+V A +       +   V V +LD NDNTP   Q  Y   V
Sbjct: 1178 GNIRTKAVLDVEAKAGYWLTVYAQDHGVVPLSSKLQVYVEVLDENDNTPLTEQPVYYPSV 1237

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
             E +P G  VL        IRA D+D
Sbjct: 1238 LENSPAGVSVLQ-------IRAFDRD 1256



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFT 69
            K +L    GVL T   LD E+   Y L+    +       CS  + IL  D NDN P F+
Sbjct: 3157 KFSLDKETGVLKTVGQLDRESQAKYILTAHVQDRDKTSWECSSQLEILISDLNDNAPRFS 3216

Query: 70   QLNYTGYVSEAAPIGALV 87
              +Y+  + E   +G LV
Sbjct: 3217 MQSYSATLPEDVEVGTLV 3234



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ TK+ LDYE   R Y L V A +       ++   + + + + NDN P F +++  G
Sbjct: 585 GVVKTKQLLDYETMKREYLLHVRANDWGLPYRRQSEIQLRIKLRNVNDNRPQFEKIDCVG 644

Query: 76  YVSEAAPIGALVLTNTSL 93
           +VS    +G  ++T +++
Sbjct: 645 HVSRYVQVGTEIITVSAI 662



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LD+E    YNL+++ T+    +A  S+ V ++D ND+ P  ++  Y   +SE
Sbjct: 1491 GNVLLAKQLDWETQNFYNLTISVTDGVN-EARTSLFVKVIDINDHRPELSESIYHVEISE 1549



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 26  KPLDYEAT-RIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           K LD EA  + YNL++ A +          SV VH+ D NDN P F+   Y   V E AP
Sbjct: 379 KLLDREAAPQGYNLTLRAVDRGTPPRFSYKSVPVHLADLNDNAPIFSTEIYDVKVPETAP 438

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNALL 110
           + + V+        ++  D D   NAL+
Sbjct: 439 VNSPVIR-------LKVSDADQGKNALV 459



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 7    LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--L 59
            +F+IL P     + P  G + T     D E    Y L V A +    + V   IV++  L
Sbjct: 2104 VFSILNPTEMFVIGPTSGAISTTGIRFDRETIDKYELIVEANSQVPTQRVAHTIVNVTVL 2163

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            D NDN P F  L Y   VS  A  G +++
Sbjct: 2164 DINDNCPIFVNLPYYAVVSVDAQKGDVIM 2192


>gi|170048314|ref|XP_001870677.1| cadherin [Culex quinquefasciatus]
 gi|167870411|gb|EDS33794.1| cadherin [Culex quinquefasciatus]
          Length = 3527

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 73/109 (66%), Gaps = 13/109 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ TK  LDYE  + YNL+V ATNMA A A C+VI+++LDRNDN PYF Q  Y 
Sbjct: 451 INPSTGVITTKDILDYETNKFYNLTVLATNMASANATCAVIINVLDRNDNVPYFEQQVYK 510

Query: 75  GYVSEAAPIGALVLT-------------NTSLPLVIRAEDKDSETNALL 110
           G VSEA PIG+LVLT             N SLPLVI+A+D DS  NALL
Sbjct: 511 GEVSEATPIGSLVLTLNELPPNVSQLLVNVSLPLVIKAKDADSGLNALL 559



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYT 74
            P  G++   KPLD E   +YNL+V AT+        S  +IV++ D NDN P FT  +Y 
Sbjct: 1922 PDSGIVTLSKPLDREVKALYNLTVRATDQGKPSLFNSAFLIVNVQDINDNPPEFTSKHYF 1981

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
              V E   +G+ +L        + A  KD+  NA ++ S
Sbjct: 1982 ASVPEINSVGSEILK-------VLATSKDTGINAEINYS 2013



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFT 69
            K A++   G+L     LDYE  + Y L++ A +        + +V + + D NDN P FT
Sbjct: 2022 KFAMNNRTGILSLADTLDYERAKDYFLTIQAVDGGTPPLSNLATVNISVTDSNDNPPQFT 2081

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Q +YT  + E A  G  +L        +RA D D+E N 
Sbjct: 2082 QNSYTARIREDAQKGDKILQ-------VRANDMDAEENG 2113



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++TKK LD E  ++Y + + A +  G     +V V + D NDN P F    Y      
Sbjct: 1303 GEIVTKKRLDREQKKLYEVPIMAVDAGGRAGFATVRVKVGDENDNAPVFLYREY------ 1356

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             A I   +  NT+    ++A D+D   NA++
Sbjct: 1357 KALIQGNLTVNTTF-FRVKAIDEDDNQNAVV 1386



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  KK LD+E    ++ +V A++       +   V V +LD NDN P F Q +YT  +
Sbjct: 1096 GVIYLKKSLDHETLSHHHFTVIASDRGVPSLSSTAHVWVSVLDMNDNPPKFEQPSYTCVL 1155

Query: 78   SEAAPIGALV 87
            SE A  G  V
Sbjct: 1156 SEHAARGQFV 1165



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G +     LDYE  + Y L + AT+ ++G  A   V V + D ND  P   Q +Y   VS
Sbjct: 990  GAIYVVDELDYEQRQSYELLIRATDSVSGVSAEVPVSVLVQDVNDCPPEIEQDSYNITVS 1049

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E A  G  +L        ++A+D D+  N ++
Sbjct: 1050 ERAQFGTAILK-------VQAKDNDTGINQVV 1074



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E    Y   V AT+    K     +VI+ + D ND  P F +  Y   V
Sbjct: 1616 GWITTLVPLDKEKREDYKFQVIATDNGQPKHATRTTVIIRLKDYNDCPPTFKESRYNSSV 1675

Query: 78   SEAAPIGALVL 88
            SE A  G +VL
Sbjct: 1676 SEDALPGTVVL 1686



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G +     LD E+   Y L V A +  +    A   V + I D NDN P FT  
Sbjct: 2129 AIEPETGYISVAGTLDRESISNYVLEVQARDNGLPTLTAYVLVNIEISDANDNPPIFTIQ 2188

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NYT  V E   IG  +L            D DS  NA
Sbjct: 2189 NYTAVVQEDKQIGYTLLK-------FEVTDADSAPNA 2218



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   K LD E+   Y L V  T+     +  ++ + +LD NDN PY  +  Y   +SE
Sbjct: 1720 GEVFVVKALDRESISRYELGVIVTD-GKYTSTTNISITVLDANDNPPYCLKYRYREQLSE 1778

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G  VL        I+A D D   N+ L
Sbjct: 1779 GVHPGTFVLQ-------IQANDIDEPANSRL 1802



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 8    FAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
            + IL   L  P       G L   K LD E   ++ +++ A         AV  VI+H+ 
Sbjct: 1491 YRILSDELEEPQFSINNAGELRLAKTLDRELKDVHLIAILAETDPSPPLTAVTEVILHVQ 1550

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDNTP F    Y+  ++E    G+ ++  T       A D DS +N 
Sbjct: 1551 DENDNTPIFESNPYSFVLAENIEKGSSIMKLT-------ARDSDSGSNG 1592



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G +L  K LD+E  + YNL+++ ++  G   V   + V ++D ND+ P FT+  Y   +S
Sbjct: 148 GNVLLAKYLDWETQKEYNLTISISD--GVHVVYTQLYVSVIDINDHRPEFTESLYRVDIS 205

Query: 79  EAAPIGALVL 88
           E+   G  VL
Sbjct: 206 ESIEEGTEVL 215



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLS--VTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    Y L+  V   +  G +    +++ + D NDN P F+   Y+  +
Sbjct: 1821 GQLKTARQLDRETQSKYQLTAHVQDRDHPGWECSSQIVIVVTDLNDNPPEFSLNPYSVTL 1880

Query: 78   SEAAPIGALV 87
             E A +G LV
Sbjct: 1881 PEDAEVGTLV 1890


>gi|312377967|gb|EFR24666.1| hypothetical protein AND_10582 [Anopheles darlingi]
          Length = 3660

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 74/120 (61%), Gaps = 24/120 (20%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ TK  LDYE T+ YNL+V  TNMA A A CSVI+++LD NDN PYF Q  Y 
Sbjct: 473 INPSTGVITTKDQLDYEHTKFYNLTVKTTNMASASATCSVIINVLDMNDNVPYFEQQVYR 532

Query: 75  GYVSEAAPIGALVLT------------------------NTSLPLVIRAEDKDSETNALL 110
           G VSEAAPIG+LVLT                        N+SLPLVI+A+D DS  NALL
Sbjct: 533 GEVSEAAPIGSLVLTLSEPFLQGNGSQLTNGGTNANHLVNSSLPLVIKAKDNDSGLNALL 592



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYT 74
            P  G++   KPLD E   +YNLSV+AT++         ++I+++ D NDN P FT  +Y 
Sbjct: 2009 PESGIVTLAKPLDRELKAVYNLSVSATDLGNPPLSNAATLIINVQDINDNPPEFTSKHYF 2068

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V E   IG+ +L        + A  KD+  NA
Sbjct: 2069 ASVPEINSIGSEILK-------VLATSKDTGINA 2095



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 7/97 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A+    G L+TKK LD EA   Y + + A +  G    C+V + I D NDN P F    Y
Sbjct: 1384 AIDKERGELVTKKKLDREARAAYEVPIMAVDAGGKAGFCTVRIRIGDENDNQPAFQYREY 1443

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               +      G L + NT+    +RA D D   NA++
Sbjct: 1444 KTLIQ-----GNLTV-NTTF-YRVRALDADENQNAVV 1473



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFT 69
            K A++   GVL     LDYE  R Y L++ A +        + +V + + D NDN P FT
Sbjct: 2109 KFAINNRTGVLSLADTLDYERARDYFLTIQAVDGGTPPLSNLATVNISVTDSNDNHPQFT 2168

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Q +Y   + E A  G  +L        +RA D D+E N 
Sbjct: 2169 QNSYNARIREDAQRGDRILQ-------VRANDLDAEENG 2200



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G +     LDYE  + Y L + AT+ ++G  A   V V + D ND  P   Q +Y   VS
Sbjct: 1076 GAIYVVDELDYERRQSYELLIRATDSVSGVSAEVPVSVLVQDVNDCPPEIEQDSYNITVS 1135

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E AP G  +L        ++A+D D+  N +++
Sbjct: 1136 ERAPFGTAILK-------VQAKDNDTGINQVIN 1161



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+  KK LD+E    ++ +V A++       +   V V ++D NDN P F Q +
Sbjct: 1177 MDPNDGVIYLKKSLDHETLSHHHFTVVASDKGVPSLSSTAHVWVSVMDMNDNPPKFEQPS 1236

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE A  G  V
Sbjct: 1237 YSCVLSEHATRGQFV 1251



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQL 71
            A+ P  G +     LD E+   Y L V A +         V+V+I   D NDN P FTQ 
Sbjct: 2216 AIEPDTGYISVAGTLDRESISNYVLEVQARDHGVPTLTAYVLVNIEISDANDNPPMFTQP 2275

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  V E   +G  +L
Sbjct: 2276 NYTAVVQEDKQLGHTLL 2292



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 12/111 (10%)

Query: 4    PVQLFAILKPALH----PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL 59
            PV+ + I   AL        G +   K LD E+   Y L V  T+     A  ++ + +L
Sbjct: 1787 PVEYYIISGDALSQFQIKSTGEVFVVKALDRESISEYELKVIVTD-GKFTATANISITVL 1845

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D NDN PY  +  Y   +SE A  G  V+        + A D D   N+ L
Sbjct: 1846 DANDNPPYCLKYRYREQLSEGARPGTFVVQ-------VLANDMDEPANSRL 1889



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E    Y   V AT+    K     +VI+ + D ND  P F +  Y   V
Sbjct: 1703 GWISTLVPLDKEKREDYKFQVLATDNGEPKHTTRTTVIIRLKDYNDCPPVFRETQYKATV 1762

Query: 78   SEAAPIGALVL 88
            +E A  G +VL
Sbjct: 1763 NEDALPGTVVL 1773



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           K LD+E  R YN++++ ++  G   V S + V ++D ND+ P FT+  Y   +SE    G
Sbjct: 176 KYLDWERQREYNITISVSD--GVHTVYSQLFVSVIDINDHRPEFTETVYRVDISENVEEG 233

Query: 85  ALVL 88
             VL
Sbjct: 234 MEVL 237


>gi|334331227|ref|XP_003341469.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1-like [Monodelphis
            domestica]
          Length = 4550

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 69/97 (71%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GV++T+K LD+E    Y+L V  TNMAG  A  +V VH+ D NDN P F Q  Y
Sbjct: 1673 AINPNSGVIITQKALDFETLPFYSLIVQGTNMAGLSANTTVWVHLQDENDNAPVFLQARY 1732

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            TG +SE+API ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1733 TGLISESAPISSVVLTDKNVPLVIRAADADKESNALL 1769



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   ++   VIV++ D ND+ 
Sbjct: 1462 LSLXKFRLDPATGSLYTAEKLDHEAVHQHVLTVMVRDQDVPVKRSFARVIVNVSDTNDHA 1521

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1522 PWFTSSSYQGRVYESAAVGSVVLQVTAL-------DKDKGENA 1557



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +H   GV+    PLD+E+   Y LS+ AT+ + G  A   V + + D NDN P FTQ +Y
Sbjct: 2191 IHFNTGVINVIAPLDFESHPAYKLSIRATDSLTGVHAEVFVDIIVEDVNDNPPVFTQQSY 2250

Query: 74   TGYVSEAAPIGALVL 88
               +SEA  +G  V+
Sbjct: 2251 VTTLSEATVMGTSVV 2265



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3248 GAIFIIDHLDYESSHDYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDMYTAVI 3307

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   ++T       + A+D D  +N     +++DG+
Sbjct: 3308 SEDAILEQSIVT-------VMADDADGPSNSHIHYSIIDGN 3341



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +YNL + A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3142 GIIRLEKPLDRELQAVYNLILKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3201

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL        + A  +D E NA
Sbjct: 3202 VPEDVLVGTEVLQ-------VYAASRDIEANA 3226



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE T+ + L V A  + M    +   V VH+ D NDN P F Q  Y   +
Sbjct: 2303 GLISLVRTLDYEETQRHELLVRAVDSGMPPLSSDAIVTVHVTDLNDNPPLFDQPLYEAKI 2362

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE AP G  V         ++A D DS     L+ S
Sbjct: 2363 SEQAPHGHFV-------TCVKAYDADSSDTDKLEYS 2391



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+ A  +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2944 KKPLDREKRDSYLLTITATDGAFSSKAI--VEVKVLDANDNSPICEKSAYSDTIPEDTVP 3001

Query: 84   GALVLTNTSLPLVIRA 99
            G L++  +++   IR+
Sbjct: 3002 GKLIMQVSAIDADIRS 3017



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    Y+++V A++      + S   V + + D NDN P FT   Y G 
Sbjct: 2830 GWITTLKELDHEKRDKYHITVVASDYGEKVQLSSTAVVEISVTDVNDNPPRFTAEIYKGT 2889

Query: 77   VSEAAPIGALV 87
            VSE  P G ++
Sbjct: 2890 VSEDDPPGGVI 2900



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T  PLD E   +YNL V AT+  G     SV+  + D NDN P F+          
Sbjct: 3040 GELKTLAPLDREQQAVYNLLVQATDGGGRFCQMSVLFTLEDVNDNAPEFS---------- 3089

Query: 80   AAPIGALVLTNTS--LPLV-IRAEDKDSETN 107
            A P    V  NT    PL  ++A D D+  N
Sbjct: 3090 ADPYAITVFENTEPKTPLTRVQATDADAGLN 3120



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++  + + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2509 GQIFTSEKLDRETAGEKVITIRLMAKDTGGKVAFCTVNVILTDDNDNAPQFRATKYRVNI 2568

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 2569 GSDAPKGTSVIK-------VLASDADEGSNA 2592



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1186 AIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGNPPKSTIARVIVKILDENDNKPQFLQ 1245

Query: 71   LNY 73
              Y
Sbjct: 1246 KFY 1248



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD EAT  Y L++T  ++    KA   ++ + +LD NDN P F Q +Y   V
Sbjct: 773 GMLKVLSPLDREATEKYTLNITVYDLGIPQKASWRLLDIRVLDANDNKPEFLQESYFIEV 832

Query: 78  SE 79
           SE
Sbjct: 833 SE 834



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   + LD E    Y L+V A +        +  V+I   D NDN P F++ N
Sbjct: 3348 IDPVRGEIKVTQLLDRETISGYTLTVQAADNGSPPRFNTTTVNIDVSDVNDNAPVFSKGN 3407

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL        +   DKDS  N 
Sbjct: 3408 YSIIIQENKPVGVSVLQ-------LMVTDKDSSHNG 3436



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T K LD  +   Y+L V AT+        + SV + +   ++  P FT   
Sbjct: 1574 IDPILGSIKTAKELDRSSQGEYDLMVKATDKGNPPMSEMTSVHIFVTISDNAIPRFTSKE 1633

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            Y+  +SE+A IG+ +        ++RA  + S    + DG+
Sbjct: 1634 YSAEISESASIGSFI-------GIVRAHSQSSVVYEIKDGN 1667



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++   +P+  +        VT ++    KA   V+V +L  N N P FTQ +Y 
Sbjct: 414 INPNTGLITILEPIRTQQASHLEFDVTTSDR---KASTKVLVKVLGANSNPPEFTQTSYR 470

Query: 75  GYVSEAAPIGALVLTNTSL 93
               E  PIG  +++ +++
Sbjct: 471 ASFDENVPIGTSIMSVSAI 489



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            GVL T   P D E   ++++ V  T       +  V+V +   D+NDN P F  L Y   
Sbjct: 1992 GVLSTTGVPFDREQQEVFDVVVEVTEEHKPSVMAHVVVRVSVEDQNDNAPVFVNLPYYAA 2051

Query: 77   VSEAAPIGALVLTNTSL 93
            V   A +G ++ + T++
Sbjct: 2052 VKVDADVGHIIRSVTAV 2068



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSVIVHILDRNDNTP 66
           A+HP  GV++    LDY  T++Y + + A +        +G  ++  + VH+   N+  P
Sbjct: 197 AIHPTSGVVVLTGRLDYAETKLYEMEILAVDRGMKLYGSSGISSMARLTVHVEQANEFAP 256

Query: 67  YFTQLNYTGYVSEAAPIGALV 87
             T +  +    E  P  A+V
Sbjct: 257 VITAVTVSPSELEKDPTYAIV 277


>gi|241121657|ref|XP_002403288.1| protocadherin fat, putative [Ixodes scapularis]
 gi|215493397|gb|EEC03038.1| protocadherin fat, putative [Ixodes scapularis]
          Length = 2933

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 64/97 (65%), Gaps = 1/97 (1%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  GV+ T + LDYE  R YNL+V ATNM GA A   V VH+LDRNDN P F +  Y 
Sbjct: 429 VDPTSGVVFTNRVLDYEGCRFYNLTVVATNMVGANASAHVAVHVLDRNDNAPRFLRDRYR 488

Query: 75  GYVSEAAPIGALVL-TNTSLPLVIRAEDKDSETNALL 110
           G VSEAA +G++VL      PLV+ AED DSE NALL
Sbjct: 489 GLVSEAAEVGSVVLAAQGDAPLVVTAEDADSEANALL 525



 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            + P  GV+  + PLD+EA  +Y+L VTAT+     A+ S   V V +LD NDN P F QL
Sbjct: 1051 IDPVEGVIDLRVPLDHEAQPLYHLVVTATDAGSPSALSSTAHVWVTVLDMNDNPPAFPQL 1110

Query: 72   NYTGYVSEAAPIGALVL 88
            +Y+  VSE AP G  V+
Sbjct: 1111 SYSCAVSELAPRGQFVM 1127



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+    PLD+E T+ YNLSV  T+    K    V+V I+D ND  P FT+  +   +SE
Sbjct: 193 GVIKLASPLDWETTQNYNLSVEVTDGVD-KVTTQVLVSIVDANDQWPEFTKSTFRVEISE 251

Query: 80  AAPIGALVL 88
             P G  VL
Sbjct: 252 NIPPGTDVL 260



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+++  +PLD E    +NL+V A++    +  ++ +++V + D NDN P F++  Y   V
Sbjct: 1901 GIVMLNRPLDREERATFNLTVQASDHGTPQLSSLATLLVVVQDVNDNPPEFSRKFYHAVV 1960

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SEA+ +G  VL        + A  +DS  NA
Sbjct: 1961 SEASAVGVEVLK-------VLATSRDSGLNA 1984



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + T KPLD E+  +Y + V+AT+  G  A   V V + D NDN P F    Y   +  
Sbjct: 1264 GEIFTTKPLDRESRHLYLIPVSATDGGGRLAFTMVRVTVTDVNDNEPQFAVSEYRVNIQV 1323

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               +G  +L        +RA DKD    A L
Sbjct: 1324 NTTVGTTILK-------VRAFDKDKGMAATL 1347



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   +PLD EAT  Y L V AT+     A   + + +LD NDN P   +  YT  VSE
Sbjct: 1693 GEVFVGRPLDREATASYFLEVVATDGVFV-ATTQLAIDVLDANDNPPVCLKSKYTELVSE 1751

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +  +   +LT       + A D D   NA L
Sbjct: 1752 SIAVNTYILT-------VEATDADENRNAQL 1775



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+   + LDYE  + Y L++ AT+ + GA +   V + + D ND  P F+Q +Y   VS
Sbjct: 953  GVVYVVEQLDYETHQKYQLTLRATDSVTGAFSDVLVGITVEDVNDFPPMFSQPSYNTSVS 1012

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            EA P        T+  L + A D+D+  NA
Sbjct: 1013 EATPY-------TTSILKVHASDRDTGANA 1035



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQL 71
            A+    G +     LD E    Y L V  T+         V+V+I   D NDN P+F Q 
Sbjct: 2105 AIDKETGYISVAASLDREMISNYVLEVECTDGGTPPLSSKVLVNIEASDVNDNPPHFAQA 2164

Query: 72   NYTGYVSEAAPIGALVLTNT 91
            NY+  V E  P+G  VL  T
Sbjct: 2165 NYSAIVQEGKPVGFTVLKFT 2184



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVS 78
            VL T + LD E    + L+    +       C+  V IL  D NDN P F Q  YT  V+
Sbjct: 1798 VLRTSRLLDRERQPRFRLTAHVQDWGQWDWECTSAVEILLSDVNDNAPAFGQDAYTATVA 1857

Query: 79   EAAPIGALV 87
            E   +G LV
Sbjct: 1858 EDVDVGTLV 1866



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 8   FAILKPA----LHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGA--KAVCSVI-VHIL 59
           F IL P+    + P  GV+ T  +P D E    Y L V A + A     A  +V+ V +L
Sbjct: 732 FRILNPSDMFEIGPTSGVVRTVGRPFDRELVSAYRLVVEARSEADGPHNAAHTVLDVGVL 791

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           D NDN P F  L Y   V   A  G LV
Sbjct: 792 DVNDNAPIFVNLPYYSVVPVEAKAGDLV 819



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD EA   YN +V+A +  +    A   V V ++D NDN P F +  Y   +
Sbjct: 1590 GTVTTLVALDREAVPSYNFTVSARDDGLPPRSATTWVFVEVVDVNDNAPAFARPRYDAAI 1649

Query: 78   SEAAPIGALVLT-NTSLP 94
             E A  G +++T  TS P
Sbjct: 1650 LEDAVPGTVIVTLETSDP 1667



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   KPLDYE  R Y L+V A +  G  A+    SV V + D ND  P F    Y   
Sbjct: 2006 GSVKVAKPLDYEDVRDYFLTVLARD-GGLPALSNQASVNVSVTDYNDCPPVFGLPVYNAV 2064

Query: 77   VSEAAPIGALVL 88
            V E A +G  ++
Sbjct: 2065 VREDARVGDRII 2076



 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 29/68 (42%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++    LD E    Y L++ A       A   V V + D NDN P F   +Y   V+E
Sbjct: 1487 GRMILVGELDRERQAEYYLAIRAETELSLVATVDVTVLVNDENDNAPMFDSASYRASVAE 1546

Query: 80   AAPIGALV 87
             A  G  V
Sbjct: 1547 NAEEGCAV 1554


>gi|449269882|gb|EMC80622.1| Protocadherin Fat 1 [Columba livia]
          Length = 4590

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 70/97 (72%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GV++++K LD+E   +Y L+V  TNMAG     +V+VH+ D NDNTP F Q  Y
Sbjct: 1712 AINPNSGVIVSQKILDFETLPVYTLTVQGTNMAGLSTNATVVVHLRDENDNTPIFMQAEY 1771

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            TG +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 TGLISESASINSVVLTDKNIPLVIRATDADKESNALL 1808



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P FT+ +YT  +S
Sbjct: 2235 GVVNVVAPLDFESHPAYKLSIRATDSLTGAHADVFVDIIVEDINDNPPVFTEQSYTATLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        + A D DS TN
Sbjct: 2295 EASVIGTSVVQ-------VSATDADSGTN 2316



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ AT+    +   +  S+IV +LD NDN P F    Y+  
Sbjct: 3180 GIIRLEKPLDRELQAVYTLTLKATDEGLPRRLSSTSSLIVSVLDINDNPPVFEHREYSAS 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        I A  +D E NA
Sbjct: 3240 VSEDVLVGTEVLQ-------IYAASRDIEANA 3264



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+E     I  + V   ++   +    +I+ + D ND+ P
Sbjct: 1502 SLKKFRLDPGTGSLYTSEKLDHETMNQHILTVMVRDQDVPVKRNYARIIISVSDTNDHAP 1561

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G+ VL  T+L       DKD   NA
Sbjct: 1562 WFTSSSYEGRVYESAAVGSAVLQVTAL-------DKDKGKNA 1596



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 9/100 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LDYE  + YNL+V A +        A C + V I+D N+N   P F+     
Sbjct: 982  GAIRIVQRLDYEKKQFYNLTVRAKDKGKPISLSATCYIEVEIVDVNENLHPPRFSIFADK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-ALLDGS 113
            G++ E AP+G+ V+T ++       E +D E   ++ DGS
Sbjct: 1042 GFIKEDAPVGSSVMTVSAYD---EDEGRDGEIRYSIRDGS 1078



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 16/102 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +   + LDYE++  Y L+V AT+  G  ++  V+   +++ D NDNTP F+Q  YT  
Sbjct: 3286 GAIFIIESLDYESSHEYYLTVEATD-GGTPSLSDVVTVNINVTDINDNTPVFSQDTYTAV 3344

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            +SE A +   V+T       + A+D D  +N      ++DG+
Sbjct: 3345 ISEDAILEQSVIT-------VMADDADGPSNNCIHYTIIDGN 3379



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +S+ A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2547 GQIFTSEKLDRETQAEKVIAISLMAKDSGGKVAFCTINVILTDDNDNAPQFRATEYEVNI 2606

Query: 78   SEAAPIGALVL----------TNTSLPLVIRAEDKDSETNALLD 111
                P G  V+          TN  +   I AE ++ + N  +D
Sbjct: 2607 GSDVPRGTSVIKVWASDADEGTNADITYAIEAESENVKENLEID 2650



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+  G  A  +V+ V +LD NDN+P   +  YT  V E A  
Sbjct: 2982 KKPLDREEKDNYLLNITATD--GTFATRAVVEVKVLDANDNSPVCEKALYTDSVPEDALP 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3040 GKLIMQ-------VSATDADIRSNA 3057



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L P  G L T  PLD E   +Y L V AT+  G     ++I+ + D NDN P FT  
Sbjct: 3070 KFRLTPDTGELKTSMPLDREQQAVYYLLVKATDGGGRFCQANIILTLEDVNDNAPEFT-- 3127

Query: 72   NYTGYVSEAAPIGALVLTNT---SLPLVIRAEDKDSETN 107
                    A P    V  NT   +L   ++A D D+  N
Sbjct: 3128 --------ADPYSITVFENTEPKTLLTRVQATDADAGMN 3158



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      + +  V+I   D NDN P F++ N
Sbjct: 3386 IDPTRGEIKVTKLLDREKISGYTLTVQASDNGNPPRLNTTTVNIDVSDVNDNPPVFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  PIG  VL      LV+   DKDS  N 
Sbjct: 3446 YSVIIQENKPIGFSVLQ-----LVVT--DKDSSHNG 3474



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    Y ++V A++      + S   V V + D NDN P FT   Y G 
Sbjct: 2868 GWITTLKELDHEKRDKYRITVIASDRGEKIQLSSLAVVEVTVTDVNDNPPRFTAEIYKGT 2927

Query: 77   VSEAAPIGALV 87
            VSE  P G ++
Sbjct: 2928 VSEDDPPGGVI 2938



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT + LDYE  + + L V A +  M    +   V V + D NDN P F QL Y   +
Sbjct: 2341 GLILTARTLDYEQIKQHKLLVRAIDGGMLPLSSDTVVTVDVTDLNDNPPLFNQLLYEAKI 2400

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2401 SELAPRGHFV-------TCVQASDADS 2420



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  SV A   +    V S   V + + D NDN P      Y  +
Sbjct: 2759 GALKLEKNLDHETTKWYQFSVQAQYASEDYNVVSSVEVSIQVKDVNDNQPVLESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        ++  D DS  N 
Sbjct: 2819 IVENMPAGTRVIQ-------VKGTDLDSGLNG 2843



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T +P+  +    + L V  ++    +A   V++ +L  N N P FTQ +Y     E
Sbjct: 419 GLITTLEPIKAQYASHFELEVVTSDR---RASAKVLIKVLGMNSNPPEFTQTSYKASFDE 475

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PIG  V+        + A D D   N  +
Sbjct: 476 NVPIGTSVMR-------VSARDPDEGENGYV 499



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 22/104 (21%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  +PLD E    YNL+V AT+  G + + + V + ++D N++ P F+   Y     
Sbjct: 1410 GTIIVARPLDAEQKSNYNLTVEATD--GTRTISTQVYIKVIDTNNHRPQFSASKY----- 1462

Query: 79   EAAPIGALVLTNTSLP----LVIRAEDKDSETNAL---LDGSTN 115
                   +V+   ++P    L + A D+D E N L   + GST+
Sbjct: 1463 ------EVVIPEDTMPETEILQVSATDRD-EKNKLIYTMQGSTD 1499



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSVIVHILDRNDNTP 66
           A+HP  GV++    LDY  T+ Y + + A +        +G  ++  + VH+   N++ P
Sbjct: 197 AIHPTSGVVVLTGRLDYSDTKHYEMEILAVDRGLKLYGSSGISSMAKLTVHVEQANEHAP 256

Query: 67  YFTQLNYTGYVSEAAPIGALV 87
             T +  T   S+  P  A+V
Sbjct: 257 VITAVTLTPSESDKDPTYAIV 277



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++   K LD      Y+L V AT+        V SV + +   ++ +P FT   
Sbjct: 1613 IDPVLGMIKIAKELDRSKQEEYSLMVKATDKGDPPMSEVTSVHIFVTVSDNASPKFTAKE 1672

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE+A IG+ V
Sbjct: 1673 YSTEISESASIGSFV 1687



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 7    LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL-- 59
             + I+ P     + P  GVL T   P D E    +++ +  T       V  ++V +   
Sbjct: 2014 FYNIINPDSRFKISPTSGVLSTTGIPFDREQQESFDVVIEVTEEYKPSVVAHIVVKVTVE 2073

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P+F  L Y   V   + +G ++   T++       DKD+  N 
Sbjct: 2074 DVNDNAPFFVNLPYYAVVKVDSEVGHVIRRVTAV-------DKDTGRNG 2115



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T + LDYE   R+YNL + A++       +    V + + + NDN P F ++N  G
Sbjct: 518 GIISTSEDLDYELMPRVYNLRIRASDWGIPYRREVEVPVTIILNNLNDNIPLFEKVNCEG 577

Query: 76  YVSEAAPIGALVLTNTSL 93
            +     +G  + T +++
Sbjct: 578 TIPRDLGVGEQITTVSAI 595



 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAV 51
            S+ + ++ I++P++   +      G + T   LDYE T I+  SV   +M      A+  
Sbjct: 1804 SNALLVYQIVEPSVRKYFAIDSSTGAIRTVTSLDYEETNIFRFSVQVHDMGIPRLYAEYA 1863

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V ++++D ND  P F++  Y
Sbjct: 1864 ANVTIYVIDINDCPPVFSRELY 1885



 Score = 34.3 bits (77), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            +++P  G++ T  + LD E     I  + VT   +     +  VIV +LD NDN P F Q
Sbjct: 1189 SINPKTGLITTTSRKLDREQQGEHILEVMVTDNGIPPKSTIARVIVKVLDENDNKPQFLQ 1248

Query: 71   LNY 73
              Y
Sbjct: 1249 KFY 1251


>gi|417407147|gb|JAA50198.1| Putative cadherin egf lag seven-pass g-type receptor [Desmodus
            rotundus]
          Length = 4593

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 69/96 (71%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+EA  +Y L+V  TNMAG     +V+VH+ D NDN P FTQ  YT
Sbjct: 1710 INPHSGSIITQKALDFEALPVYTLTVQGTNMAGLSTNSTVLVHLQDENDNAPVFTQAEYT 1769

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1770 GRISESASINSVVLTDKNVPLVIRATDADRESNALL 1805



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LSV AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2232 GVINVIAPLDFESHPAYKLSVRATDSLTGAHAEVFVDIVVEDVNDNPPVFVQQSYAATLS 2291

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2292 EASVIGTSVVQ-------VRATDSDSEPN 2313



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1498 LSLKKFRLDPATGSLYTAEALDHEAVHQHVLTVMVRDQDVPVKRNFVRIVVNVSDTNDHA 1557

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A  G++VL  T+L       DKD   NA
Sbjct: 1558 PWFTSSSYEGRVYESAATGSVVLQVTAL-------DKDKGRNA 1593



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ AT+    +   A  +V+V +LD NDN P F    Y+  
Sbjct: 3177 GIIQLEKPLDRELQAVYTLTLKATDQGLPRRLTATSTVVVSVLDINDNPPVFEYREYSAS 3236

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3237 VSEDTLIGTEVLQ-------VYAASRDIEANA 3261



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 14/109 (12%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K ++ P  G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+
Sbjct: 3275 KFSIDPRTGAIFLIESLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFS 3334

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            Q  YT  +SE A +   V+T       + A+D D   N     +++DG+
Sbjct: 3335 QDPYTAVISEDAVLEQPVIT-------VMADDADGPLNSHIHYSIIDGN 3376



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     ++++ + D NDN P F+  
Sbjct: 3067 KFKLNPDTGELKTLAPLDREEQAVYHLVVKATDGGGRFCQANIVLTLDDVNDNAPEFSAD 3126

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3127 PYTMTVFENTEPGTLL 3142



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V +   V + + D NDN+P      Y  +
Sbjct: 2756 GKLKLEKALDHETTKWYQFSILARCTPEDDEVVASVDVSIQVKDANDNSPVLESNPYEAF 2815

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        +RA D DS TN 
Sbjct: 2816 IVENQPGGSRVIQ-------VRASDLDSGTNG 2840



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F      
Sbjct: 979  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLHPPVFPSFVEK 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
              V E  PIG+ V+T       + A D+D+  +     ++ DGS
Sbjct: 1039 AVVKEDVPIGSSVMT-------VSAHDEDTGRDGEIRYSIRDGS 1075



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E    Y L+VTAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2979 KEPLDRERQDSYLLTVTATDGTFASKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDAFP 3036

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3037 GKLIMQ-------VSATDADIRSNA 3054



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T +++    KA   ++ V +LD NDN P F Q +Y   V
Sbjct: 770 GMLKILSPLDRETTDKYTLNITVSDLGIPQKAAWHLLAVRVLDANDNPPEFFQESYFVEV 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A D+D
Sbjct: 830 SEDKEVNSEIIQ-------VEATDRD 848



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  + + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2544 GQIFTLEKLDREIPAEKVIAVRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATKYEVNI 2603

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 2604 GSNAPKGTSVIK-------VLASDADEGSNA 2627



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTAT-NMAGAKA-VCSVIVHILDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A+ N +  +A   +V + + D NDN P F++ N
Sbjct: 3383 IDPARGEVKVTKLLDRETISGYTLTVQASDNGSPPRANTTTVNIDVSDVNDNAPVFSREN 3442

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL        +   D+DS  N 
Sbjct: 3443 YSVIIQENKPVGFSVLQ-------LLVTDRDSSHNG 3471



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        V  VIV ILD NDN P F Q
Sbjct: 1186 SIHPRTGLITTTSRRLDREQQDEHILEVTVTDNGSPPRSTVARVIVKILDENDNKPQFLQ 1245

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              Y   + E         T       + A DKD   NA
Sbjct: 1246 KFYKIRLPEREKPERERTTKREPIYRVIATDKDEGPNA 1283



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-CSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  KPLD E    YNL+V AT+  G   +   V + ++D ND+ P F+   Y   + 
Sbjct: 1407 GTIIVAKPLDAEQRSNYNLTVEATD--GTNTIHTQVFIKVIDTNDHRPQFSTSKYEVVIP 1464

Query: 79   E-AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  AP   +        L I A DKD E N L+
Sbjct: 1465 EDTAPETEI--------LQISAVDKD-EKNKLI 1488



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 416 GLISILEPVKRQQASQFELEVTTSDR---KASTRVLVKVLSANSNAPEFTQTAYKASFDE 472

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 473 NVPIGTTVMS 482



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT   Y G 
Sbjct: 2865 GWITTLKELDHEKRDNYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTAEIYKGT 2924

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            VSE  P G ++        ++   D DSE
Sbjct: 2925 VSEDDPPGGVI-------AILSTTDADSE 2946



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      AV  V+V ++  D+NDN P F  L Y   
Sbjct: 2028 GVLSTTGIPFDREQQEAFDVVVEVTQEHKPAAVSHVLVKVIIEDQNDNAPVFVNLPYYAV 2087

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V   A +G ++   T++       D+DS  N 
Sbjct: 2088 VKVDAAVGHIIRHVTAV-------DRDSGKNG 2112



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      AK  
Sbjct: 1801 SNALLVYHIVEPSVHKYFAIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAKYA 1860

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +V +H++D ND  P F++  Y   +      G  VLT       + A D DS   + L
Sbjct: 1861 ANVTIHVIDINDCPPVFSKSLYEASLLLPTYRGVKVLT-------VNATDADSRAFSQL 1912



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E   ++ L V A + A  +    +   + V + D NDN P F   NY  
Sbjct: 873 GVVTVVRPLDPEVQHVHYLKVEARDQATEEPQLFSTVLLKVSVEDVNDNPPRFIPPNYRV 932

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 933 KVREDLPEGTIIM 945


>gi|410917722|ref|XP_003972335.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1-like [Takifugu
            rubripes]
          Length = 4583

 Score =  104 bits (259), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++T++PLDYEAT  Y L +  TNMAG     +++VH+ D NDN P FTQ  +T
Sbjct: 1685 INPNSGVVVTQRPLDYEATPQYTLIIQGTNMAGLGTNTTLLVHLKDENDNAPIFTQKEFT 1744

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+AP+ ++VLT  + PLVIRA D D + NA+L
Sbjct: 1745 GIISESAPVNSVVLTRENTPLVIRASDADGDQNAML 1780



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
            F++ K  L P  G L T + LD+E    + L+V     ++   + +  VIV++ D NDN 
Sbjct: 1473 FSLRKFRLDPGTGTLYTAEKLDHETMHRHILTVMVRDQDIPVKRNLVRVIVNVDDTNDNA 1532

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+F    Y+G V E+A +G+ VL        + A DKD   NA
Sbjct: 1533 PWFVGTPYSGRVFESAAVGSAVLQ-------VTARDKDKGHNA 1568



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  ++PLD E    Y L   A++    +  +VC V++ +LD NDN P F    YT  V
Sbjct: 3154 GVISLERPLDRELQATYELRALASDQGSPRFSSVCLVVISVLDINDNPPVFEHREYTATV 3213

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE    G  +L        ++A  +D+E N 
Sbjct: 3214 SEDVTAGTQLLR-------VQAASRDTEANG 3237



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G L   + LDYE  ++YNL+  A +        + C + VH++D N+N   P F      
Sbjct: 952  GALRIVQNLDYETKQVYNLTAKAKDKGKPMSLSSTCFIEVHVVDVNENLYRPLFRSFVEK 1011

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDK--DSETN-ALLDGS 113
            G++ E AP+G  V+T     L    EDK  D E   ++ DGS
Sbjct: 1012 GFIKEDAPVGTSVMT-----LTAEDEDKGRDGEVRYSIRDGS 1048



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G L    PLD EA   Y L++T  ++   +   S +  V ILD NDN+P F Q +Y+  +
Sbjct: 743 GWLQVYSPLDREAVDSYTLNITVYDLGIPQKSSSRLLGVKILDANDNSPQFLQDSYSVQI 802

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE  P+G  ++        + + DKD   N ++
Sbjct: 803 SEGTPVGTEIIQ-------VDSSDKDQGNNGVV 828



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A++P  G++ T  P++ ++T    L V     A AKA   VIV ++D N+N P F Q +Y
Sbjct: 383 AINPDTGLISTAGPINADSTPQIELEVIT---ADAKAGTKVIVDVIDVNNNAPEFQQTSY 439

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V E  P G  VLT       ++A D D   N  +
Sbjct: 440 KTTVDENVPTGTSVLT-------VKATDHDRGENGYV 469



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLDYEA+  Y +++ AT+        + +V +++ D NDN P F+Q 
Sbjct: 3253 SVDPRSGDVFVIEPLDYEASHEYYITIEATDGGSPPLSDMATVNINLTDVNDNRPVFSQD 3312

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             YT  VSE   +G  V T       + AED D  +++
Sbjct: 3313 VYTAVVSEDTELGRTVAT-------VNAEDLDGPSHS 3342



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            GV+ T + LDYE T+ + L V   +  G  A+ S   V V + D NDN P FTQ  Y   
Sbjct: 2313 GVISTAQVLDYEETQQHKLRVRXVD-GGVPALTSEVLVTVDVTDLNDNAPEFTQNTYNST 2371

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  +         ++A D DS
Sbjct: 2372 ISELAPRGHFITQ-------VQASDADS 2392



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+   +PLD+E    Y LSV AT+ + GA +   V + + D NDN P F    Y   VS
Sbjct: 2207 GVVHVVQPLDFETHPAYKLSVRATDSLTGAHSEVFVDIILEDVNDNAPVFLSKTYRANVS 2266

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  +L        + A+D D+  N
Sbjct: 2267 EASVIGMHILQ-------VDAKDADTGNN 2288



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 11/91 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G L+  +PLD E    YNL+V AT+  G + V + V++ ++D N++ P F++  Y   V+
Sbjct: 1382 GTLIVARPLDAEQKSNYNLTVEATD--GTRNVSTQVLIRVIDTNNHRPQFSEEFYEVNVA 1439

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E  P G  VL        I A D+D E N L
Sbjct: 1440 EDEPPGTEVLQ-------ISASDRD-EKNKL 1462



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 10/88 (11%)

Query: 22   LLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            +  +KPLD E    Y L++TA++ +  AKA  +V V +LD NDN+P   +  Y+  V E 
Sbjct: 2953 VFVRKPLDREEKDNYLLNITASDGIFTAKA--TVEVKVLDANDNSPRCEKALYSESVPEN 3010

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G L+L        + A D D  +NA
Sbjct: 3011 SPAGRLILQ-------VSASDADIRSNA 3031



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-TATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y   + + T       V S I  V + D NDN P F    Y   
Sbjct: 2731 GALKLQKSLDHETTKWYQFVLHSQTKQENYDIVASAIINVQVKDVNDNKPAFESDPYEAV 2790

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P G  V+        +RA D+DS TN 
Sbjct: 2791 VVENLPSGTQVIQ-------VRASDQDSGTNG 2815



 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G L   + LD E T  Y L+V A++        S +++I   D NDN P F+Q NY+  +
Sbjct: 3364 GELKVARQLDRERTSGYTLTVVASDSGTPPLSSSAMINIDISDVNDNPPLFSQANYSLII 3423

Query: 78   SEAAPIGALVL 88
             E  P G  VL
Sbjct: 3424 QENRPKGTSVL 3434



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 31/68 (45%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T +PLD E    +  ++ A +  G      V V + D NDN P F+   YT  V E
Sbjct: 3052 GELKTSQPLDREEQEEHRFTMRAVDGGGRYCEADVHVSVEDVNDNPPQFSSDPYTFTVFE 3111

Query: 80   AAPIGALV 87
               IG  V
Sbjct: 3112 NTEIGTYV 3119



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++  +S+ A +  G    C V V + D NDN P F   +Y   +
Sbjct: 2519 GEIFTLESLDRENNIEKVVPISLIARDGGGKVGFCVVSVILTDVNDNAPQFRAADYKSTI 2578

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            +  AP G  V+        I A D D  +NA ++ S
Sbjct: 2579 ASDAPRGTSVVR-------IAASDTDEGSNADIEFS 2607



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   KPLD E   +Y L + A + A  +    +   + + + D NDN P F   NY  
Sbjct: 846 GVVSVTKPLDRELHPVYVLKIAARDQAFNEPQLVSTVPLTISLEDVNDNPPKFVPPNYRV 905

Query: 76  YVSEAAPIGALVL 88
            V E  PIG +++
Sbjct: 906 KVREDLPIGTVIM 918



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI-LDRNDN-TPYFTQL 71
            A+ P  G +   K LD  +   Y L+V A++   +    +  VHI +  +DN  P FT+ 
Sbjct: 1584 AIDPVLGTITVAKELDRNSKAQYELTVKASDHGASPLSTTAAVHIEVTVSDNAAPRFTEK 1643

Query: 72   NYTGYVSEAAPIGALV 87
            +++  VSE+A  G+ V
Sbjct: 1644 DFSAEVSESAQPGSFV 1659



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD E    Y + V AT+        +   V V + D NDN P FT 
Sbjct: 2835 AVNSETGWVTTLKELDREKMEKYTIGVLATDQGDRVQHVTGTRVEVTVADVNDNPPRFTA 2894

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P  + V+       ++   D DSE
Sbjct: 2895 EVYKGTVSEDDPPPSGVIA------ILSTTDDDSE 2923



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 17/114 (14%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIV 56
            ++ I++P  H  +      G +     LDYE    ++ +V   ++      A+A  +V V
Sbjct: 1781 VYQIVEPFAHNYFAIDSNTGAIRITTALDYEQRNAFHFTVQVHDLGMPRLFAEAAANVTV 1840

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             ++D ND  P F+Q  Y   V      G  V+        I A D DS  N+ L
Sbjct: 1841 EVIDVNDCPPVFSQKMYEATVIVPTYKGVEVIQ-------INATDSDSRPNSKL 1887


>gi|354490726|ref|XP_003507507.1| PREDICTED: protocadherin Fat 1-like [Cricetulus griseus]
 gi|344246355|gb|EGW02459.1| Protocadherin Fat 1 [Cricetulus griseus]
          Length = 4589

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 69/96 (71%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L+V  TNMAG  A  +V VH+ D NDN P FT+  Y+
Sbjct: 1713 INPHSGSIITQKDLDFETLSIYTLTVQGTNMAGLSANTTVTVHMQDENDNPPVFTRAEYS 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G+VSE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1773 GFVSESASVNSVVLTDRNVPLVIRATDADRESNALL 1808



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +YT  +S
Sbjct: 2235 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFVQQSYTTTLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EAA IG  VL        ++A D DSE N
Sbjct: 2295 EAAVIGTPVLQ-------VKATDSDSEPN 2316



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D ND+ P
Sbjct: 1502 SLKKFRLDPATGALYTSEKLDHEAIHQHMLTVMVRDQDVPVKRNFARIIVNVSDMNDHAP 1561

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1562 WFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1596



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +YNL V AT+  G     ++++ + D NDN P FT  
Sbjct: 3070 KFKLNPDTGELRTLAPLDREEQAVYNLLVKATDGGGRSCQATIVLTLEDVNDNAPEFTAD 3129

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3130 PYTITVFENTEPGTLL 3145



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  V
Sbjct: 3286 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNINVSDINDNTPVFSQDTYTTVV 3345

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +   V+T       I A+D D  +N+
Sbjct: 3346 GEDAALEQSVIT-------IMADDADGPSNS 3369



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCS--VIVHILDRN 62
            + F I K +     G L  +K LD+E T+ Y  S+ A   M   + V S  V + + D N
Sbjct: 2750 EFFVIDKQS-----GRLKLEKSLDHETTKWYQFSILARCTMDDYEVVASIDVSIQVKDAN 2804

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            DN+P      Y  ++ E  P G+ V+        IRA D DS TN 
Sbjct: 2805 DNSPVLESNPYEAFIVENLPGGSRVIQ-------IRASDLDSGTNG 2843



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   KPLD E    Y L+V A +      V +  V+I   D NDN P F++ N
Sbjct: 3386 IDPIRGEVKVTKPLDRETISGYTLTVQAADNGNPPRVNTTTVNIDVSDVNDNAPLFSRDN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3446 YSVIIQENKPVGFSVLK-----LVVT--DKDSSHNG 3474



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +K LD E   +Y L++ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3180 GIIQLEKHLDREQQAVYTLTLKAVDQGVPRKLTATSTVVVSVLDINDNPPVFEYREYGAT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3240 VSEDILIGTEVLQ-------VYAASRDIEANA 3264



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL++ A +        + C V V ++D N+N   P F+     
Sbjct: 982  GAVRIVQQLDFEKKQVYNLTIRAKDKGKPVSLSSTCYVEVEVVDMNENLHPPVFSSFVEK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  P G+ V+T       + A D+D+  +     ++ DGS
Sbjct: 1042 GVVKEDVPTGSSVMT-------VSAHDEDTGRDGEIRYSIRDGS 1078



 Score = 41.2 bits (95), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE TR+++ +V   +M      A+  
Sbjct: 1804 SNALLVYQIVEPSVHNYFAIDATTGAIHTVLSLDYEETRVFHFTVQVHDMGTPRLFAECA 1863

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V +H++D ND  P F++
Sbjct: 1864 ANVTIHVIDINDCPPVFSK 1882



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            KKPLD E    Y L++TAT+     +   V V +LD NDN+P   +  Y+  + E A  G
Sbjct: 2982 KKPLDREQKDSYLLTITATD-GTFSSKARVEVKVLDANDNSPVCEKTLYSDTIPEDALPG 3040

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV+        + A D D  +NA
Sbjct: 3041 KLVMQ-------VSATDADIRSNA 3057



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGTPPRSTIARVIVKILDENDNKPQFLQ 1248

Query: 71   LNYTGYVSEAAPI-GALVLTNTSLPLVIRAEDKDSETNALL 110
              Y   + E     G   +    L  VI A DKD   NA L
Sbjct: 1249 KFYKIRLPEREKADGERSVKREPLYRVI-AADKDEGPNAEL 1288



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V++ ++D ND+ P F+   Y   V E
Sbjct: 1410 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVLIKVIDTNDHRPQFSTSKYEVTVPE 1468

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   +L        I A DKD E N L+
Sbjct: 1469 DTEPETEILQ-------ISAVDKD-EKNKLI 1491



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2547 GQIFTLEKLDRETPAEKVISIRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRSTKYEVNI 2606

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2607 GSSAAKGTSVVK-------VFASDADEGSNA 2630



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2862 AINVETGWITTLKELDHEERASYQIKVIASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2921

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2922 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2949



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    +A   ++ V +LD NDN P F Q +Y   V
Sbjct: 773 GMLKVLSPLDREVTDKYTLNITVYDLGIPQRAAWRLLDVTVLDANDNPPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 833 SEDKEVNSEIIQ-------VEATDKD 851



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           A  K +L+   G++   +P+  + T  + L VT ++    KA   V+V ++  N N P F
Sbjct: 408 ARAKFSLNHNTGLISILEPIKRQHTSHFELEVTTSDR---KASTKVMVKVVGTNSNPPEF 464

Query: 69  TQLNYTGYVSEAAPIGALVL 88
           TQ  Y     E  PIG  V+
Sbjct: 465 TQTAYKASFDENVPIGTTVM 484



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      AV  V+V   I D+NDN P F  L Y   
Sbjct: 2031 GVLSTTGIPFDREQREAFDVVVEVTKEHEPSAVAHVVVKVTIEDQNDNAPVFVNLPYYAV 2090

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V   A +G ++   T++       D+DS  N 
Sbjct: 2091 VKVDAEVGHVIRYVTAI-------DRDSGRNG 2115



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE  + + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2341 GLISLVRALDYEQFQQHKVFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEAKI 2400

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE A  G  V       + ++A D DS
Sbjct: 2401 SEHAAHGHFV-------MCVKACDADS 2420



 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY+ 
Sbjct: 876 GVVRIIQPLDREVQPVHYLKIEARDQATEEPRLFSTVLLKVSLDDVNDNPPKFIPPNYSV 935

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 936 KVREDLPEGTIIM 948


>gi|426256282|ref|XP_004021770.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1 [Ovis aries]
          Length = 4588

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L++  TNMAG     +V+VH+LD NDN P F Q  YT
Sbjct: 1712 INPHSGSIITRKALDFETLPIYTLTIQGTNMAGLSTNATVLVHLLDENDNLPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRATDADKESNALL 1807



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVISVVAPLDFESHPAYKLSIQATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDADSEPN 2315



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EAT  + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEATHQHILTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  V
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVSINVTDINDNTPVFSQDTYTAVV 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     A++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYAIIDGN 3378



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A  ++++ +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATSTIVISVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3239 VSEDILIGTEVLQ-------VYAASRDIEANA 3263



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ +  SV A    G     A   V + + D NDN+P      Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWFQFSVLARCSHGDYELVASVDVSIQVKDANDNSPVLESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS +N 
Sbjct: 2818 IVENLPAGSRVIQ-------IRASDLDSGSNG 2842



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F      
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLHPPVFPSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E AP+G+ V+  ++     R ED  +D E + ++ DGS
Sbjct: 1041 GAVKENAPVGSSVMKVSA-----RDEDTGRDGEIHYSIRDGS 1077



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E    Y+L V A +  G     S+++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSAPLDREEQATYHLLVKAADGGGRFCQASIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3129 PYTITVFENTEPGTLL 3144



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPARGEVKVTKLLDRETISGYTLTVQASDNGSPPRVATTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   D+DS  N 
Sbjct: 3445 YSLIIQENKPVGFSVLQ-----LVVT--DRDSSHNG 3473



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2981 KKPLDREERDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDAFP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIIAKPLDAEQKSNYNLTVEATD-GTTSILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISAVDKD-EKNKLI 1490



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+     PLD E T  Y L++T +++    +A   ++ + +LD NDN P F Q +Y   V
Sbjct: 772 GMFKILSPLDRETTDRYTLNITVSDLGLPQRAAWHLLEIRVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 832 SEDKEINSEIIQ-------VEATDKD 850



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      AV  VIV ++  D+NDN P F  L Y   
Sbjct: 2030 GVLSTTGIPFDREQQEAFDVVVEVTRERKPPAVAHVIVKVVIEDQNDNAPVFVNLPYYAL 2089

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V   A +G ++   T++       D+DS  N 
Sbjct: 2090 VKVDAAVGQVIRHVTAV-------DRDSGRNG 2114



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T + LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLRELDHEKRDSYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AIVSTTDADSE 2948



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PL  +    + L VT ++    KA   V+V +L  N + P FTQ  Y     E
Sbjct: 418 GLISILEPLKRQQASHFELEVTTSDR---KASTRVLVKVLSANSHPPEFTQTAYKASFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +   A +  G  A C++ V + D NDN P F    +   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVIPIRFMAKDAGGKVAFCTINVILTDDNDNAPQFRATKFEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                P G  V+        + A D D  +NA
Sbjct: 2606 GSNVPKGTSVIK-------VLASDADEGSNA 2629



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVI--VHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E   ++ L V A + A    + + +VI  V + D NDN P F   NY  
Sbjct: 875 GVVRILNPLDREEQHVHYLKVEARDQAREEPQLLSTVILKVSLEDVNDNPPKFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTIIM 947



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHKYFTIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFT 69
             +V +H++D ND  P F+
Sbjct: 1863 ANVTIHVIDINDCPPVFS 1880


>gi|449500756|ref|XP_004174871.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1 [Taeniopygia
            guttata]
          Length = 4576

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 69/97 (71%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GV++T+K LD+E    Y L+V  TNMAG  +  +V+VH+ D NDN P F Q  Y
Sbjct: 1706 AINPNSGVIVTQKILDFETLPFYALTVQGTNMAGLSSNATVLVHLQDENDNPPVFMQAEY 1765

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            TG +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1766 TGLISESASINSVVLTDKNIPLVIRAADADKESNALL 1802



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV     PLD+E+   Y LSV AT+ + GA A   V + + D NDN P FT+ +Y   +S
Sbjct: 2231 GVXNVVAPLDFESHPAYKLSVRATDSLNGAHADVFVDIIVEDINDNPPVFTEQSYIATLS 2290

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V         + A D DS TN
Sbjct: 2291 EASVIGTSVAQ-------VSATDADSGTN 2312



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+E     I  + V   ++   +    V+V++ D ND+ P
Sbjct: 1496 SLKKFRLDPATGSLYTSEKLDHETMNQHILTIMVRDQDVPVKRNYARVVVNVSDTNDHAP 1555

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT   Y G V E+A +G+ VL  T+L       DKD   NA
Sbjct: 1556 WFTSPAYEGRVYESAAVGSAVLQVTAL-------DKDKGKNA 1590



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LDYE  ++YNL+V A +        ++C V V I+D N+N   P F+     
Sbjct: 976  GAIRIVQRLDYEKKQLYNLTVRAKDKGKPISLSSMCYVEVEIIDVNENLHPPQFSIFADK 1035

Query: 75   GYVSEAAPIGALVLT 89
            G++ E AP+G+ V+T
Sbjct: 1036 GFIKEDAPVGSSVMT 1050



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 16/102 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +   + LDYE++  Y L+V AT+  G  ++  V+   +++ D NDN+P F+Q  YT  
Sbjct: 3273 GAIFIIESLDYESSHEYYLTVEATD-GGTPSLSDVVTVNINVTDINDNSPVFSQDTYTAV 3331

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            +SE A +   V+T       + A+D D  +N      ++DG+
Sbjct: 3332 ISEDAMLEQSVIT-------VMADDADGPSNNRVHYTIIDGN 3366



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT K LDYE  + + L + A +  M    +   V V + D NDN P F+QL Y   +
Sbjct: 2337 GLILTAKTLDYEQIKQHKLLIRAVDGGMLPLSSDTIVTVDVTDLNDNPPLFSQLLYEAKI 2396

Query: 78   SEAAPIGALV 87
            SE AP G  V
Sbjct: 2397 SELAPRGHFV 2406



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +S+ A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2543 GQIFTAEKLDRETQAEKVIAISLMAKDSGGKVAFCTVNVILTDDNDNAPQFRATEYEVNI 2602

Query: 78   SEAAPIGALVL----------TNTSLPLVIRAEDKDSETNALLD 111
                P G  V+          TN  +   I AE  + E N  +D
Sbjct: 2603 GTDVPRGTSVIKVWASDADEGTNADITYSIEAESDNVEENLEID 2646



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 7/100 (7%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L P  G L T   LD E   +Y+L V AT+  G     ++I+ + D NDN P FT  
Sbjct: 3066 KFRLTPDTGELKTLMALDREQQAVYHLLVKATDGGGRFCQANIILTLEDVNDNAPEFTTD 3125

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+  V E    G L+         ++A D D+  ++L D
Sbjct: 3126 TYSITVFENTEPGTLLTR-------VQATDADAGMHSLTD 3158



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    AKAV  V V +LD NDN+P   +  Y   V E A  
Sbjct: 2978 KKPLDREEKDNYLLNITATDGTFAAKAV--VEVKVLDANDNSPVCEKTLYADSVPEDALP 3035

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3036 GKLIMQ-------VSATDADIRSNA 3053



 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 10/77 (12%)

Query: 35   IYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNT 91
            +Y L++ AT+    +   +  S+IV +LD NDN P F Q  Y+  VSE   +G  VL   
Sbjct: 3182 VYTLTLKATDEGLPRRLSSTSSLIVSVLDINDNPPVFEQREYSASVSEDILVGTEVLQ-- 3239

Query: 92   SLPLVIRAEDKDSETNA 108
                 I A  +D E NA
Sbjct: 3240 -----IHAASRDIEANA 3251



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      + +  V+I   D NDN P F++ N
Sbjct: 3373 IDPTRGEIKVTKLLDREKISGYTLTVQASDNGSPPKLNTTTVNIDVSDVNDNPPVFSKGN 3432

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   D+DS  N 
Sbjct: 3433 YSVIIQENKPVGFSVLQ-----LVVT--DRDSSHNG 3461



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    Y + V A++      + S   V V + D NDN P FT   Y G 
Sbjct: 2864 GWITTLKELDHEKRDKYKIIVVASDRGEKIQLSSMAVVEVTVTDVNDNPPRFTAEIYKGT 2923

Query: 77   VSEAAPIGALV 87
            VSE  P G ++
Sbjct: 2924 VSEDDPPGGVI 2934



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 22/104 (21%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  +PLD E    YNL+V AT+  G +++ + V + ++D N++ P F+   Y     
Sbjct: 1404 GTIIVARPLDAEQKSNYNLTVEATD--GTRSISTQVYIKVIDTNNHRPQFSASKY----- 1456

Query: 79   EAAPIGALVLTNTSLP----LVIRAEDKDSETNAL---LDGSTN 115
                   +V+   +LP    L + A D+D E N L   + GST+
Sbjct: 1457 ------EVVIPEDTLPETEILQVSATDRD-EKNKLIYTIQGSTD 1493



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T +P+  +    + L V  ++    +A   V++ +L  N N P FTQ +Y     E
Sbjct: 413 GLITTLEPIKAQYASHFELEVVTSDR---RASAKVLIKVLGMNSNPPEFTQTSYKASFDE 469

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PIG  V+        + A+D D   N  +
Sbjct: 470 NVPIGTSVMR-------VSAKDPDEGENGYV 493



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  SV A        V S   V + + D NDN P      Y  +
Sbjct: 2755 GELKLEKNLDHETTKWYQFSVQAQYANEDYNVVSSVEVSIQVKDANDNQPILESNPYEAF 2814

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        ++  D DS  N 
Sbjct: 2815 IVENTPAGTRVIQ-------VKGTDLDSGLNG 2839



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++   K LD      YNL V AT+        V SV + +   ++ +P FT   
Sbjct: 1607 IDPILGMIKIAKELDRSNQEEYNLMVKATDKGHPPMSEVTSVHIFVTVSDNASPKFTAKE 1666

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE+A IG+ V
Sbjct: 1667 YSTEISESANIGSFV 1681



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTAT-NMAGAKA-VCSVIVHILDRNDNTPYFTQ 70
            +++P  G++ T  + LD E    + L VT T N   AK+ +  VIV +LD NDN P F Q
Sbjct: 1183 SINPKTGLITTTSRKLDREQQGEHILEVTVTDNGTPAKSTIARVIVKVLDENDNKPQFLQ 1242

Query: 71   LNY 73
              Y
Sbjct: 1243 KFY 1245



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T + LDYE   R+YNL + A++       +    V + + + NDN P F ++N  G
Sbjct: 512 GIISTSEDLDYELMPRVYNLRIRASDWGVPYRREVEVPVTIILNNLNDNIPLFEKINCEG 571

Query: 76  YVSEAAPIGALVLTNTSL 93
            +     +G  + T +++
Sbjct: 572 IIPRDLGVGEQITTVSAI 589



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           GVL    PLD E    Y L++T  ++    K+  +++ + ILD NDN P F Q +Y   V
Sbjct: 767 GVLKILSPLDRELRDKYTLNITVYDLGIPQKSAWTLLDIKILDANDNPPEFLQDSYFVEV 826

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE     + ++        I A DKD   N 
Sbjct: 827 SENKEPNSEIIQ-------IGATDKDLGANG 850


>gi|440903408|gb|ELR54072.1| Protocadherin Fat 1 [Bos grunniens mutus]
          Length = 4588

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L++  TNMAG     +V+VH+LD NDN P F Q  YT
Sbjct: 1712 INPHSGSIITQKALDFETLPIYTLTIQGTNMAGLSTNTTVLVHLLDENDNLPVFVQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRATDADRESNALL 1807



 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVISVVAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYATTLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDADSEPN 2315



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA    I  + V   ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAIHQHILTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN P F+Q  YT  V
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGSPSLSDVATVSINVTDINDNAPVFSQDTYTAVV 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     A++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYAIIDGN 3378



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E    Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSAPLDREEQAAYHLLVKATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3129 PYTITVFENTEPGTLL 3144



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A  ++++ +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTIVISVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3239 VSEDILIGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ +  SV A    G     A   V + + D NDN+P      Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWFQFSVLARCTHGDYELVASVDVSIQVKDANDNSPVLESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS +N 
Sbjct: 2818 IVENLPAGSRVIQ-------IRASDLDSGSNG 2842



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F      
Sbjct: 981  GAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYVEVEVIDVNENLHPPVFPSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E AP+G+ V+  ++     R ED  +D E + ++ DGS
Sbjct: 1041 GAVKENAPLGSSVMKVSA-----RDEDMGRDGEIHYSIRDGS 1077



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDNTP   +  Y+  + E A  
Sbjct: 2981 KKPLDREERDSYLLTITATDGTFSSKAI--VEVKVLDANDNTPVCEKTLYSDTIPEDAFP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPARGEVKVTKLLDRETISGYTLTVQASDNGSPPRVTTTTVNIDVSDVNDNAPVFSREN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   D+DS  N 
Sbjct: 3445 YSLIIQENKPMGFSVLQ-----LVVT--DRDSSHNG 3473



 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T +++    +A   ++ + +LD NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDRYTLNITVSDLGLPQRAAWHLLEIRVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 832 SEDKEINSEIIQ-------VEATDKD 850



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      AV  VIV ++  D+NDN P F  L Y   
Sbjct: 2030 GVLSTTGIPFDREQQEAFDVVVEVTRERKPPAVAHVIVKVVIEDQNDNAPVFVNLPYYAL 2089

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V   A +G ++   T++       D+DS  N 
Sbjct: 2090 VKVDAAVGQVIRHVTAV-------DRDSGRNG 2114



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIIAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISAVDKD-EKNKLI 1490



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LD+E    Y + V A++      + S   V V + D ND+ P FT   Y G 
Sbjct: 2867 GWITTLRELDHEKRDSYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTAEIYKGT 2926

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            VSE  P G ++        ++   D DSE
Sbjct: 2927 VSEDDPPGGVI-------AIVSTTDADSE 2948



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +   A +  G  A C++ V + D NDN P F    +   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVIPIRFMAKDAGGKVAFCTINVILTDDNDNAPQFRATKFEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 2606 GSNAPKGTSVIK-------VLASDADEGSNA 2629



 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PL  +    + L VT ++    KA   V+V +L  N + P FTQ  Y     E
Sbjct: 418 GLISILEPLKRQQASHFELEVTTSDR---KASTRVLVKVLSANSHPPEFTQTAYKASFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHKYFTIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFT 69
             +V +H++D ND  P F+
Sbjct: 1863 ANVTIHVIDINDCPPVFS 1880



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVI--VHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E  +++ L V A + A    + + +VI  V + D NDN P F   NY  
Sbjct: 875 GVVKILNPLDREEHQVHYLKVEARDQAREEPQLLSTVILKVSLDDVNDNPPKFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTIIM 947


>gi|300794923|ref|NP_001179921.1| protocadherin Fat 1 precursor [Bos taurus]
          Length = 4588

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L++  TNMAG     +V+VH+LD NDN P F Q  YT
Sbjct: 1712 INPHSGSIITQKALDFETLPIYTLTIQGTNMAGLSTNTTVLVHLLDENDNLPLFVQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRATDADRESNALL 1807



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVISVVAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYATTLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDADSEPN 2315



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA    I  + V   ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAIHQHILTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN P F+Q  YT  V
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVSINVTDINDNAPVFSQDTYTAVV 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     A++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYAIIDGN 3378



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E    Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSAPLDREEQAAYHLLVKATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3129 PYTITVFENTEPGTLL 3144



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A  ++++ +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTIVISVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3239 VSEDILIGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ +  SV A    G     A   V + + D NDN+P      Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWFQFSVLARCTHGDYELVASVDVSIQVKDTNDNSPVLESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS +N 
Sbjct: 2818 IVENLPAGSRVIQ-------IRASDLDSGSNG 2842



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F      
Sbjct: 981  GAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYVEVEVIDVNENLHPPVFPSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E AP+G+ V+  ++     R ED  +D E + ++ DGS
Sbjct: 1041 GAVKENAPLGSSVMKVSA-----RDEDMGRDGEIHYSIRDGS 1077



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDNTP   +  Y+  + E A  
Sbjct: 2981 KKPLDREERDSYLLTITATDGTFSSKAI--VEVKVLDANDNTPVCEKTLYSDTIPEDAFP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPARGEVKVTKLLDRETISGYTLTVQASDNGSPPRVTTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   D+DS  N 
Sbjct: 3445 YSLIIQENKPVGFSVLQ-----LVVT--DRDSSHNG 3473



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T +++    +A   ++ + +LD NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDRYTLNITVSDLGLPQRAAWHLLEIRVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 832 SEDKEINSEIIQ-------VEATDKD 850



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +   A +  G  A C++ V + D NDN P F    +   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVIPIRFMAKDAGGKVAFCTINVILTDDNDNAPQFRATKFEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +AP G  V+        + A D D  +NA
Sbjct: 2606 GSSAPKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIIAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISAVDKD-EKNKLI 1490



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      AV  VIV ++  D+NDN P F  L Y   
Sbjct: 2030 GVLSTTGIPFDREQQEAFDVVVEVTRERKPPAVAHVIVKVVIEDQNDNAPVFVNLPYYAL 2089

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V   A +G ++   T++       D+DS  N 
Sbjct: 2090 VKVDAAVGQVIRHVTAV-------DRDSGRNG 2114



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LD+E    Y + V A++      + S   V V + D ND+ P FT   Y G 
Sbjct: 2867 GWITTLRELDHEKRDSYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTAEIYKGT 2926

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            VSE  P G ++        ++   D DSE
Sbjct: 2927 VSEDDPPGGVI-------AIVSTTDADSE 2948



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PL  +    + L VT ++    KA   V+V +L  N + P FTQ  Y     E
Sbjct: 418 GLISILEPLKRQQASHFELEVTTSDR---KASTRVLVKVLSANSHPPEFTQTAYKASFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVI--VHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E  +++ L V A + A    + + +VI  V + D NDN P F   NY  
Sbjct: 875 GVVKILNPLDREEQQVHYLKVEARDQAREEPQLLSTVILKVSLDDVNDNPPKFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTIIM 947



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHKYFTIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFT 69
             +V +H++D ND  P F+
Sbjct: 1863 ANVTIHVIDINDCPPVFS 1880


>gi|296472443|tpg|DAA14558.1| TPA: FAT tumor suppressor homolog 1-like [Bos taurus]
          Length = 4588

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L++  TNMAG     +V+VH+LD NDN P F Q  YT
Sbjct: 1712 INPHSGSIITQKALDFETLPIYTLTIQGTNMAGLSTNTTVLVHLLDENDNLPLFVQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRATDADRESNALL 1807



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVISVVAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYATTLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDADSEPN 2315



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA    I  + V   ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAIHQHILTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN P F+Q  YT  V
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVSINVTDINDNAPVFSQDTYTAVV 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     A++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYAIIDGN 3378



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E    Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSAPLDREEQAAYHLLVKATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3129 PYTITVFENTEPGTLL 3144



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A  ++++ +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLTLKAVDHGLPRRLTATGTIVISVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3239 VSEDILIGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ +  SV A    G     A   V + + D NDN+P      Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWFQFSVLARCTHGDYELVASVDVSIQVKDTNDNSPVLESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS +N 
Sbjct: 2818 IVENLPAGSRVIQ-------IRASDLDSGSNG 2842



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F      
Sbjct: 981  GAVRIIQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYVEVEVIDVNENLHPPVFPSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E AP+G+ V+  ++     R ED  +D E + ++ DGS
Sbjct: 1041 GAVKENAPLGSSVMKVSA-----RDEDMGRDGEIHYSIRDGS 1077



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDNTP   +  Y+  + E A  
Sbjct: 2981 KKPLDREERDSYLLTITATDGTFSSKAI--VEVKVLDANDNTPVCEKTLYSDTIPEDAFP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPARGEVKVTKLLDRETISGYTLTVQASDNGSPPRVTTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   D+DS  N 
Sbjct: 3445 YSLIIQENKPVGFSVLQ-----LVVT--DRDSSHNG 3473



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T +++    +A   ++ + +LD NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDRYTLNITVSDLGLPQRAAWHLLEIRVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 832 SEDKEINSEIIQ-------VEATDKD 850



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +   A +  G  A C++ V + D NDN P F    +   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVIPIRFMAKDAGGKVAFCTINVILTDDNDNAPQFRATKFEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +AP G  V+        + A D D  +NA
Sbjct: 2606 GSSAPKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      AV  VIV ++  D+NDN P F  L Y   
Sbjct: 2030 GVLSTTGIPFDREQQEAFDVVVEVTRERKPPAVAHVIVKVVIEDQNDNAPVFVNLPYYAL 2089

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V   A +G ++   T++       D+DS  N 
Sbjct: 2090 VKVDAAVGQVIRHVTAV-------DRDSGRNG 2114



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIIAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISAVDKD-EKNKLI 1490



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LD+E    Y + V A++      + S   V V + D ND+ P FT   Y G 
Sbjct: 2867 GWITTLRELDHEKRDSYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTAEIYKGT 2926

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            VSE  P G ++        ++   D DSE
Sbjct: 2927 VSEDDPPGGVI-------AIVSTTDADSE 2948



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PL  +    + L VT ++    KA   V+V +L  N + P FTQ  Y     E
Sbjct: 418 GLISILEPLKRQQASHFELEVTTSDR---KASTRVLVKVLSANSHPPEFTQTAYKASFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVI--VHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E  +++ L V A + A    + + +VI  V + D NDN P F   NY  
Sbjct: 875 GVVKILNPLDREEQQVHYLKVEARDQAREEPQLLSTVILKVSLDDVNDNPPKFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTIIM 947



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 10/78 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHKYFTIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFT 69
             +V +H++D ND  P F+
Sbjct: 1863 ANVTIHVIDINDCPPVFS 1880


>gi|395542254|ref|XP_003773048.1| PREDICTED: protocadherin Fat 1 [Sarcophilus harrisii]
          Length = 4589

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 67/96 (69%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++T+K LD+E    Y L V ATNMAG  A  +V VH+ D NDN P F Q  YT
Sbjct: 1713 INPNSGVIITQKTLDFETLPFYTLIVQATNMAGLSANTTVWVHLQDENDNVPVFMQAEYT 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1773 GLISESASINSVVLTDKNVPLVIRAMDADKESNALL 1808



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+E    + L+V     ++   ++   VIV++ D ND+ 
Sbjct: 1501 LSLKKFRLDPATGSLYTTEKLDHETAHQHILTVMVRDQDVPVKRSFARVIVNVSDMNDHA 1560

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1561 PWFTSSSYQGRVYESAAVGSVVLQVTAL-------DKDKGENA 1596



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + G  A   V + + D NDN P F Q +YT  +S
Sbjct: 2235 GVINVIAPLDFESHPAYKLSIRATDSLTGVHAEVFVDIIVEDVNDNPPVFAQQSYTTTLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDS 104
            EA  IG  V+        + A D DS
Sbjct: 2295 EATVIGMSVVQ-------VHATDSDS 2313



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  +
Sbjct: 3286 GAIFIIDNLDYESSHEYYLTVEATDGGTPSLNDVAAVNINVTDINDNTPVFSQDTYTAVI 3345

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3346 SEDAVLEQSVVT-------VMADDADGPSNNYIHYSIIDGN 3379



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++      A C + + +LD NDN P F Q NY   V
Sbjct: 773 GMLKVLSPLDRETTEKYTLNITVYDLGIPQKAAWCLLDIRVLDANDNKPEFLQDNYFIEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        I A DKD
Sbjct: 833 SENRELNSEIIQ-------IEATDKD 851



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +YNL + A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 3180 GIIRLEKPLDRELQAVYNLILKAVDHGVPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL        + A  +D E NA
Sbjct: 3240 VPEDILVGTEVLQ-------VYAASRDIEVNA 3264



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  +PLD E    YNL+V AT+   A  +  V++ ++D ND+ P F++  Y   + E
Sbjct: 1410 GTIIVARPLDAEQKSNYNLTVEATDGTTA-IITQVLIKVIDTNDHRPQFSKSKYEVLIPE 1468

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                    + +T + L I A DKD E N L+
Sbjct: 1469 DT------VPDTEI-LQISATDKD-EKNKLI 1491



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+   G L T  PLD E   +YNL V AT+  G     SV+  + D NDN P F+  
Sbjct: 3070 KFKLNADTGELKTFAPLDREQQAVYNLLVKATDGGGRFCQMSVVFTLEDVNDNAPEFS-- 3127

Query: 72   NYTGYVSEAAPIGALVLTNTS--LPLV-IRAEDKDSETN 107
                    A P    V  NT    PL  ++A D D+  N
Sbjct: 3128 --------ADPYAITVFENTEPKTPLTRVQATDADAGLN 3158



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E  + Y  SV A +      V S +   + + D NDN+P      Y  +
Sbjct: 2759 GKLKLEKNLDHETMKWYQFSVVAQSTHEDSEVVSSVDISIQVKDANDNSPILESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E  P G+ V+        ++A D DS TN  +
Sbjct: 2819 IVENLPGGSKVIQ-------VKATDLDSGTNGQI 2845



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL++ A +        + C V V I+D N+N   P F+     
Sbjct: 982  GAIRIVQQLDFEKKQVYNLTIKARDKGKPISLSSTCYVEVEIIDVNENLHPPLFSSFVDK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              V E  PIG  V+T       + A D+D+
Sbjct: 1042 ALVKEDVPIGTSVMT-------VSAHDEDT 1064



 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    Y+++V A++      + S   V + + D NDN P FT   Y G 
Sbjct: 2868 GWITTLKELDHEKRDKYHITVIASDYGEKVQLSSTAVVEISVTDVNDNPPRFTAEIYKGT 2927

Query: 77   VSEAAPIGALV 87
            VSE  P G ++
Sbjct: 2928 VSEDDPPGGVI 2938



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE  + + L V A + +G   + S   V V + D NDN P F QL Y   
Sbjct: 2341 GLISLVRSLDYEEIQEHKLLVRAVD-SGMPPLSSDMIVTVDVTDLNDNPPLFDQLLYEAK 2399

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2400 ISEQAPHGHFV-------TCVKAYDADS 2420



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++  + + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2547 GQIFTSEKLDRETAGEKVIAIRLMAKDTGGKVAFCTINVILTDDNDNAPQFRATKYKVTI 2606

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 2607 GSDAPKGTSVIK-------VLASDADEGSNA 2630



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2982 KKPLDREKKDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPICEKSAYSDTIPEDTVP 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3040 GKLIMQ-------VSATDADIRSNA 3057



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   + LD E    Y L+V A +      V +  V+I   D NDN P F++ N
Sbjct: 3386 IDPVKGEIKVTQLLDREMISGYTLTVQAADNGSPPRVNTTTVNIDVSDVNDNPPVFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3446 YSIIIQENKPVGVSVLQ-----LVVT--DKDSSHNG 3474



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRKLDREQQNEHILEVTVTDDGIPPKSTIARVIVKILDENDNKPQFLQ 1248

Query: 71   LNY 73
              Y
Sbjct: 1249 KFY 1251



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 17/113 (15%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P+ H  +      G + T   LDYE   I++ +V   +M      A+  
Sbjct: 1804 SNALLVYQIVEPSAHKYFAIDSSTGAIRTVLSLDYEEAHIFHFTVQVHDMGTPRLFAEYA 1863

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             +V +H++D ND  P F+++ Y   V      G  V+T       + A D DS
Sbjct: 1864 ANVTIHVIDINDCPPVFSKMLYESSVLVPTYKGVKVIT-------VNATDADS 1909



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T K LD+     Y+L V AT+        + SV + +   ++  P FT   
Sbjct: 1613 IDPILGSIKTAKELDHSNQEEYDLMVKATDRGNPPMSEITSVHIFVTISDNAIPRFTSKE 1672

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SEAA IG+ +
Sbjct: 1673 YSTEISEAASIGSFI 1687



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++   +P+  +    + L V  ++   +KA   V+V ++  N N P FTQ +Y 
Sbjct: 414 INPNTGLITILEPVSTQQASHFELDVMTSD---SKAYTKVLVKVMSTNSNPPEFTQTSYK 470

Query: 75  GYVSEAAPIGALVLTNTSL 93
               E  P+G  V++ +++
Sbjct: 471 TSFDENIPVGTSVMSVSAI 489



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 17/102 (16%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSVIVHILDRNDNTP 66
           A+HP  GV++    LDY  T++Y + + A +        +G  ++  + VH+   N+  P
Sbjct: 197 AIHPTSGVVVLTGRLDYAETKLYEMEILAVDRGMKLYGSSGISSMARLSVHVEQANEYAP 256

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             T +       E  P  A          V+  ED D  +N 
Sbjct: 257 VITAVTLFPLEQEKDPTYA----------VVTVEDNDQGSNG 288



 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA--GAKAVCSVIVHILDR-NDNTPYFTQLNYTG 75
           G + T + LDYE   R+Y L V A++      + V +++   L+  NDNTP F ++N  G
Sbjct: 518 GAVSTSEELDYELMPRVYTLRVRASDWGLPYRREVEALVTLTLNNLNDNTPLFEKINCEG 577

Query: 76  YVSEAAPIGALVLTNTSL 93
            +     +G  + T +++
Sbjct: 578 TIPRDLGVGEQITTVSAI 595


>gi|157951641|ref|NP_001074755.2| FAT tumor suppressor homolog 1 precursor [Mus musculus]
          Length = 4590

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 70/96 (72%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T++ LD+E   +Y+L+V  TNMAG     +V+VH+ D NDN P FTQ  Y+
Sbjct: 1714 INPHSGSIITQRALDFETLPMYSLTVQGTNMAGLSTNTTVVVHVRDENDNPPVFTQAEYS 1773

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1774 GFISESASVNSVVLTDRNVPLVIRATDADRESNALL 1809



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LSV AT+ + GA A   V + + D NDN P F Q +Y+  +S
Sbjct: 2236 GVVNVIAPLDFESHPAYKLSVRATDSLTGAHAEVFVDIIVEDINDNPPVFVQPSYSTTLS 2295

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  VL        +RA D DSE N
Sbjct: 2296 EASVIGTPVLQ-------VRATDSDSEPN 2317



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D+ND+ P
Sbjct: 1503 SLKKFRLDPATGALYTAEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVNVSDKNDHAP 1562

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1563 WFTSPSYDGRVYESAAVGSVVLQVTAL-------DKDKGRNA 1597



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN+P F+Q  YT  V
Sbjct: 3287 GAIFIIESLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNSPVFSQDTYTTVV 3346

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       I A+D D  +N+
Sbjct: 3347 SEDAALEQPVIT-------IMADDADGPSNS 3370



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   KPLD E    Y L+V A +      V +  V+I   D NDN P F++ N
Sbjct: 3387 IDPVRGEVKVTKPLDRETISGYTLTVQAADNGNPPRVNTTTVNIDVSDVNDNAPLFSRDN 3446

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3447 YSVIIQENKPVGFSVLK-----LVVT--DKDSSHNG 3475



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  + T  + L VT ++    +A   V+V +L  N N P FTQ +Y   + E
Sbjct: 419 GLISILEPIRRQHTSHFELEVTTSD---KRASARVVVKVLGTNSNPPEFTQTSYKASIDE 475

Query: 80  AAPIGALV 87
            APIGA V
Sbjct: 476 NAPIGAAV 483



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +K LD E   +Y L++ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3181 GIIQLEKHLDRELQAVYTLTLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAS 3240

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3241 VSEDIVIGTEVLQ-------VYAASRDIEANA 3265



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T   LD E   +YNL V AT+  G     ++++ + D NDN P FT  
Sbjct: 3071 KFKLNPDTGELRTLALLDREEQAVYNLLVKATDGGGRSCQAAIVLTLEDVNDNAPEFTAE 3130

Query: 72   NYTGYVSE 79
             YT  V E
Sbjct: 3131 PYTITVFE 3138



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            KKPLD E    Y L+VTAT+     +   V V +LD NDN+P   + +Y+  + E A  G
Sbjct: 2983 KKPLDREQKDSYLLTVTATD-GTFSSKARVEVKVLDANDNSPVCEKTSYSDTIPEDALPG 3041

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV+        + A D D  +NA
Sbjct: 3042 KLVMQ-------VSATDADIRSNA 3058



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V + I   + + D NDN+P      Y  +
Sbjct: 2760 GRLKLEKSLDHETTKWYQFSILARCTLDDYEVVASIDVSIQVKDANDNSPVLESSPYEAF 2819

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS  N 
Sbjct: 2820 IVENLPGGSRVIQ-------IRASDLDSGANG 2844



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGVPPRSTIARVIVKILDENDNRPQFLQ 1248

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
              Y   + E          +   PL  + A DKD   NA L
Sbjct: 1249 KFYKIRLPEREKADGDRSASKREPLYRVIAADKDEGPNAEL 1289



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2548 GQIFTLEKLDRETPAEKVISIRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRSTKYEVNI 2607

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2608 GSSAAKGTSVVK-------VFASDADEGSNA 2631



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V++ ++D ND+ P F+   Y   V E
Sbjct: 1411 GTIIVAKPLDAEQKSSYNLTVEATD-GTTTILTQVLIKVIDTNDHRPQFSTSKYEVAVPE 1469

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   +L        I A D+D E N L+
Sbjct: 1470 DTEPEVEILQ-------ISAVDRD-EKNKLI 1492



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H      P  G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1805 SNALLVYQIVEPSVHNYFAIDPTTGAIRTVLSLDYEETHAFHFTVQVHDMGTPRLFAEYA 1864

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V VH++D ND  P F++  Y
Sbjct: 1865 ANVTVHVIDINDCPPVFSKSLY 1886



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2863 AINMETGWITTLKELDHEERASYQIKVVASDHGEKVQLSSTAIVGVTVTDVNDSPPRFTA 2922

Query: 71   LNYTGYVSEAAPIGALV 87
              Y G VSE  P G ++
Sbjct: 2923 EIYKGTVSEDDPPGGVI 2939



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           GVL    PLD E    Y L++T  ++    +A   ++ V +LD NDN P F Q +Y   V
Sbjct: 773 GVLKVLSPLDREVMDKYTLNITVYDLGIPQRAAWRLLDVTVLDANDNAPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 833 SEDKEVNSEIIQ-------VEATDKD 851



 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY+ 
Sbjct: 876 GVVKIIQPLDREVQPVHYLKIEARDQATEEPRLFSTVLLKVSLDDVNDNPPRFIPPNYSV 935

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 936 KVREDLPEGTIIM 948



 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T   LD E+T  Y L+V AT+       +   V + + D NDN P  ++  Y   +
Sbjct: 1090 GVIETSDRLDRESTSHYWLTVYATDQGVVPLSSFIEVYIEVEDVNDNAPQTSEPVYYPEI 1149

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P    V+        I A D DS +N  L
Sbjct: 1150 MENSPKDVSVVQ-------IEAFDPDSSSNDKL 1175


>gi|148703591|gb|EDL35538.1| mCG141119 [Mus musculus]
          Length = 4592

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 70/96 (72%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T++ LD+E   +Y+L+V  TNMAG     +V+VH+ D NDN P FTQ  Y+
Sbjct: 1716 INPHSGSIITQRALDFETLPMYSLTVQGTNMAGLSTNTTVVVHVRDENDNPPVFTQAEYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1776 GFISESASVNSVVLTDRNVPLVIRATDADRESNALL 1811



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LSV AT+ + GA A   V + + D NDN P F Q +Y+  +S
Sbjct: 2238 GVVNVIAPLDFESHPAYKLSVRATDSLTGAHAEVFVDIIVEDINDNPPVFVQPSYSTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  VL        +RA D DSE N
Sbjct: 2298 EASVIGTPVLQ-------VRATDSDSEPN 2319



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D+ND+ P
Sbjct: 1505 SLKKFRLDPATGALYTAEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVNVSDKNDHAP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1565 WFTSPSYDGRVYESAAVGSVVLQVTAL-------DKDKGRNA 1599



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN+P F+Q  YT  V
Sbjct: 3289 GAIFIIESLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNSPVFSQDTYTTVV 3348

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       I A+D D  +N+
Sbjct: 3349 SEDAALEQPVIT-------IMADDADGPSNS 3372



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   KPLD E    Y L+V A +      V +  V+I   D NDN P F++ N
Sbjct: 3389 IDPVRGEVKVTKPLDRETISGYTLTVQAADNGNPPRVNTTTVNIDVSDVNDNAPLFSRDN 3448

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3449 YSVIIQENKPVGFSVLK-----LVVT--DKDSSHNG 3477



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  + T  + L VT ++    +A   V+V +L  N N P FTQ +Y   + E
Sbjct: 419 GLISILEPIRRQHTSHFELEVTTSD---KRASARVVVKVLGTNSNPPEFTQTSYKASIDE 475

Query: 80  AAPIGALV 87
            APIGA V
Sbjct: 476 NAPIGAAV 483



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +K LD E   +Y L++ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3183 GIIQLEKHLDRELQAVYTLTLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAS 3242

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3243 VSEDIVIGTEVLQ-------VYAASRDIEANA 3267



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T   LD E   +YNL V AT+  G     ++++ + D NDN P FT  
Sbjct: 3073 KFKLNPDTGELRTLALLDREEQAVYNLLVKATDGGGRSCQAAIVLTLEDVNDNAPEFTAE 3132

Query: 72   NYTGYVSE 79
             YT  V E
Sbjct: 3133 PYTITVFE 3140



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            KKPLD E    Y L+VTAT+     +   V V +LD NDN+P   + +Y+  + E A  G
Sbjct: 2985 KKPLDREQKDSYLLTVTATD-GTFSSKARVEVKVLDANDNSPVCEKTSYSDTIPEDALPG 3043

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV+        + A D D  +NA
Sbjct: 3044 KLVMQ-------VSATDADIRSNA 3060



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A   +   + V S  V + + D NDN+P      Y  +
Sbjct: 2762 GRLKLEKSLDHETTKWYQFSILARCTLDDYEVVASIDVSIQVKDANDNSPVLESSPYEAF 2821

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS  N 
Sbjct: 2822 IVENLPGGSRVIQ-------IRASDLDSGANG 2846



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1191 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGVPPRSTIARVIVKILDENDNRPQFLQ 1250

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
              Y   + E          +   PL  + A DKD   NA L
Sbjct: 1251 KFYKIRLPEREKADGDRSASKREPLYRVIAADKDEGPNAEL 1291



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2550 GQIFTLEKLDRETPAEKVISIRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRSTKYEVNI 2609

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2610 GSSAAKGTSVVK-------VFASDADEGSNA 2633



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V++ ++D ND+ P F+   Y   V E
Sbjct: 1413 GTIIVAKPLDAEQKSSYNLTVEATD-GTTTILTQVLIKVIDTNDHRPQFSTSKYEVAVPE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   +L        I A D+D E N L+
Sbjct: 1472 DTEPEVEILQ-------ISAVDRD-EKNKLI 1494



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H      P  G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1807 SNALLVYQIVEPSVHNYFAIDPTTGAIRTVLSLDYEETHAFHFTVQVHDMGTPRLFAEYA 1866

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V VH++D ND  P F++  Y
Sbjct: 1867 ANVTVHVIDINDCPPVFSKSLY 1888



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2865 AINMETGWITTLKELDHEERASYQIKVVASDHGEKVQLSSTAIVGVTVTDVNDSPPRFTA 2924

Query: 71   LNYTGYVSEAAPIGALV 87
              Y G VSE  P G ++
Sbjct: 2925 EIYKGTVSEDDPPGGVI 2941



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           GVL    PLD E    Y L++T  ++    +A   ++ V +LD NDN P F Q +Y   V
Sbjct: 773 GVLKVLSPLDREVMDKYTLNITVYDLGIPQRAAWRLLDVTVLDANDNAPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 833 SEDKEVNSEIIQ-------VEATDKD 851



 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY+ 
Sbjct: 876 GVVKIIQPLDREVQPVHYLKIEARDQATEEPRLFSTVLLKVSLDDVNDNPPRFIPPNYSV 935

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 936 KVREDLPEGTIIM 948


>gi|6688786|emb|CAB65271.1| mouse fat 1 cadherin [Mus musculus]
          Length = 4587

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 70/96 (72%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T++ LD+E   +Y+L+V  TNMAG     +V+VH+ D NDN P FTQ  Y+
Sbjct: 1714 INPHSGSIITQRALDFETLPMYSLTVQGTNMAGLSTNTTVVVHVRDENDNPPVFTQAEYS 1773

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1774 GFISESASVNSVVLTDRNVPLVIRATDADRESNALL 1809



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LSV AT+ + GA A   V + + D NDN P F Q +Y+  +S
Sbjct: 2236 GVVNVIAPLDFESHPAYKLSVRATDSLTGAHAEVFVDIIVEDINDNPPVFVQPSYSTTLS 2295

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  VL        +RA D DSE N
Sbjct: 2296 EASVIGTPVLQ-------VRATDSDSEPN 2317



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D+ND+ P
Sbjct: 1503 SLKKFRLDPATGALYTAEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVNVSDKNDHAP 1562

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1563 WFTSPSYDGRVYESAAVGSVVLQVTAL-------DKDKGRNA 1597



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN+P F+Q  YT  V
Sbjct: 3287 GAIFIIESLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNSPVFSQDTYTTVV 3346

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       I A+D D  +N+
Sbjct: 3347 SEDAALEQPVIT-------IMADDADGPSNS 3370



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   KPLD E    Y L+V A +      V +  V+I   D NDN P F++ N
Sbjct: 3387 IDPVRGEVKVTKPLDRETISGYTLTVQAADNGNPPRVNTTTVNIDVSDVNDNAPLFSRDN 3446

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3447 YSVIIQENKPVGFSVLK-----LVVT--DKDSSHNG 3475



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  + T  + L VT ++    +A   V+V +L  N N P FTQ +Y   + E
Sbjct: 419 GLISILEPIRRQHTSHFELEVTTSD---KRASARVVVKVLGTNSNPPEFTQTSYKASIDE 475

Query: 80  AAPIGALV 87
            APIGA V
Sbjct: 476 NAPIGAAV 483



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +K LD E   +Y L++ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3181 GIIQLEKHLDRELQAVYTLTLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAS 3240

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3241 VSEDIVIGTEVLQ-------VYAASRDIEANA 3265



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 35/68 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T   LD E   +YNL V AT+  G     ++++ + D NDN P FT  
Sbjct: 3071 KFKLNPDTGELRTLALLDREEQAVYNLLVKATDGGGRSCQAAIVLTLEDVNDNAPEFTAE 3130

Query: 72   NYTGYVSE 79
             YT  V E
Sbjct: 3131 PYTITVFE 3138



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            KKPLD E    Y L+VTAT+     +   V V +LD NDN+P   + +Y+  + E A  G
Sbjct: 2983 KKPLDREQKDSYLLTVTATD-GTFSSKARVEVKVLDANDNSPVCEKTSYSDTIPEDALPG 3041

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV+        + A D D  +NA
Sbjct: 3042 KLVMQ-------VSATDADIRSNA 3058



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A   +   + V S  V + + D NDN+P      Y  +
Sbjct: 2760 GRLKLEKSLDHETTKWYQFSILARCTLDDYEVVASIDVSIQVKDANDNSPVLESSPYEAF 2819

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS  N 
Sbjct: 2820 IVENLPGGSRVIQ-------IRASDLDSGANG 2844



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGVPPRSTIARVIVKILDENDNRPQFLQ 1248

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
              Y   + E          +   PL  + A DKD   NA L
Sbjct: 1249 KFYKIRLPEREKADGDRSASKREPLYRVIAADKDEGPNAEL 1289



 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2548 GQIFTLEKLDRETPAEKVISIRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRSTKYEVNI 2607

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2608 GSSAAKGTSVVK-------VFASDADEGSNA 2631



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V++ ++D ND+ P F+   Y   V E
Sbjct: 1411 GTIIVAKPLDAEQKSSYNLTVEATD-GTTTILTQVLIKVIDTNDHRPQFSTSKYEVAVPE 1469

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   +L        I A D+D E N L+
Sbjct: 1470 DTEPEVEILQ-------ISAVDRD-EKNKLI 1492



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           GVL    PLD E    Y L++T  ++    KA   ++ V +LD NDN P F Q +Y   V
Sbjct: 773 GVLKVLSPLDREVMDKYTLNITVYDLGIPQKAAWRLLDVTVLDANDNAPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 833 SEDKEVNSEIIQ-------VEATDKD 851



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H      P  G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1805 SNALLVYQIVEPSVHNYFAIDPTTGAIRTVLSLDYEETHAFHFTVQVHDMGTPRLFAEYA 1864

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V VH++D ND  P F++  Y
Sbjct: 1865 ANVTVHVIDINDCPPVFSKSLY 1886



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2863 AINMETGWITTLKELDHEERASYQIKVVASDHGEKVQLSSTAIVGVTVTDVNDSPPRFTA 2922

Query: 71   LNYTGYVSEAAPIGALV 87
              Y G VSE  P G ++
Sbjct: 2923 EIYKGTVSEDDPPGGVI 2939



 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY+ 
Sbjct: 876 GVVKIIQPLDREVQPVHYLKIEARDQATEEPRLFSTVLLKVSLDDVNDNPPRFIPPNYSV 935

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 936 KVREDLPEGTIIM 948



 Score = 34.3 bits (77), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T   LD E+T  Y L+V AT+       +   V + + D NDN P  ++  Y   +
Sbjct: 1090 GVIETSDRLDRESTSHYWLTVYATDQGVVPLSSFIEVYIEVEDVNDNAPQTSEPVYYPEI 1149

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P    V+        I A D DS +N  L
Sbjct: 1150 MENSPKDVSVVQ-------IEAFDPDSSSNDKL 1175


>gi|326919108|ref|XP_003205825.1| PREDICTED: protocadherin Fat 1-like [Meleagris gallopavo]
          Length = 4590

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 69/97 (71%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GV++++K LD+E   +Y L+V  TNMAG     +V+VH+ D NDN P F Q  Y
Sbjct: 1712 AINPNSGVIVSQKALDFETLPVYTLTVQGTNMAGLTTNATVLVHLRDENDNIPIFMQSEY 1771

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            TG +SE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 TGLISESASVNSVVLTDKNVPLVIRAMDADKESNALL 1808



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y L++ AT+ + GA A   V + + D NDN P FT+ +YT  +S
Sbjct: 2235 GVINVVAPLDFESHPAYKLNIRATDSLTGAHADVFVDIIVEDINDNPPMFTEQSYTVTLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  VL        + A D DS TN
Sbjct: 2295 EASVIGTSVLQ-------VSATDADSGTN 2316



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+E    + L+V     ++   +    +IV++ D ND+ P
Sbjct: 1502 SLKKFRLDPGTGSLYTTEKLDHETMNQHVLTVMVRDQDVPVKRNYARIIVNVSDTNDHAP 1561

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +FT  +Y G V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1562 WFTSSSYEGRVYESAAVGSAVLQVTAL-------DKDKGKNAEL 1598



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 11/91 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +     LDYE++  Y L+V AT+  G  ++  V+   +++ D NDNTP F+Q  YT  
Sbjct: 3286 GAIFIIDSLDYESSHEYYLTVEATD-GGTPSLSDVVTVNINVTDINDNTPVFSQDTYTAV 3344

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +SE A +   V+T       + A+D D  +N
Sbjct: 3345 ISEDAMLEQSVIT-------VMADDADGPSN 3368



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +K LD E   +Y L++ AT+    +   +  S+IV +LD NDN P F    Y+  
Sbjct: 3180 GIIRLEKSLDRELQAVYTLTLKATDEGLPRRLSSTSSLIVSVLDINDNPPVFEYREYSAS 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        I A  +D E NA
Sbjct: 3240 VSEDTVVGTEVLQ-------IHAASRDIEANA 3264



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +S+ A +  G  A C+V V + D NDN P F  + Y   +
Sbjct: 2547 GQIFTSEKLDRETQAEKVIAISLMAKDSGGKVAFCTVNVILTDDNDNAPQFRAMEYEVNI 2606

Query: 78   SEAAPIGALVL----------TNTSLPLVIRAEDKDSETNALLD 111
                P G  V+          TN  +   I AE ++ + N  +D
Sbjct: 2607 GSDVPRGTSVIKVWASDADEGTNADITYTIEAESENVKENLEID 2650



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT + LDYE  + + L + A +  M    +   + V + D NDN P F QL Y   +
Sbjct: 2341 GLILTTRTLDYEKIQQHKLLIRAIDGGMLPLSSDTVITVDVTDLNDNPPLFNQLVYEAKI 2400

Query: 78   SEAAPIGALV 87
            SE AP G  V
Sbjct: 2401 SELAPRGHFV 2410



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      +   +V + + D NDN P F++ N
Sbjct: 3386 IDPSRGEIKVTKLLDREKISGYTLTVQASDNGNPPRRNTTTVNIDVSDVNDNPPVFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  PIG  VL      LV+   DKDS  N 
Sbjct: 3446 YSIIIQENKPIGFSVLQ-----LVVT--DKDSSHNG 3474



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +L  I   A++   G + T K LD+E    Y ++V A++      + S   V V + D N
Sbjct: 2854 ELDVIESFAINMETGWITTLKELDHEMRDKYKITVIASDRGEKIQLSSLAVVEVTVTDVN 2913

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALV 87
            DN P FT   Y G VSE  P G ++
Sbjct: 2914 DNPPRFTAEIYKGTVSEDDPPGGII 2938



 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E    YNL+VT  ++      A   + + ILD NDN P F Q +Y   V
Sbjct: 773 GMLKILSPLDREVKDKYNLNVTVYDLGIPQKSAWHLLDIRILDANDNPPEFLQDSYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   + + ++        I A DKD   N 
Sbjct: 833 SENKELNSEIIQ-------IEATDKDLGANG 856



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++   K LD+     YNL V AT+        V SV + +   ++ +P FT   
Sbjct: 1613 IDPILGIIKIAKELDHSNQEEYNLMVKATDKGDPPMNEVASVHIFVTVSDNASPKFTAKE 1672

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE+A IG+ V
Sbjct: 1673 YSTEISESASIGSFV 1687



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KK LD E    Y L++TAT+  G  A  +V+ V +LD NDN+P   +  YT  V E A  
Sbjct: 2982 KKSLDREEKDHYLLNITATD--GTFATRAVVEVKVLDANDNSPVCEKALYTDIVPEDALP 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3040 GKLIMQ-------VSATDADIRSNA 3057



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
            K  L P  G L T  PLD E   +Y L + AT+  G     ++I+ + D NDN P FT
Sbjct: 3070 KFRLTPDTGELKTLMPLDREQQAVYYLLMKATDGGGRFCQANIILTLEDVNDNAPVFT 3127



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T +P+  + +  + L V  ++    +A   V++ +L  N N P FTQ  Y     E
Sbjct: 419 GLITTSEPIKAQYSSHFELEVMTSDR---RATAKVLIKVLGMNSNPPEFTQTAYKASFDE 475

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PIG  V+        + A+D D   N  +
Sbjct: 476 NVPIGTSVMR-------VSAKDPDEGENGYV 499



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  SV A        V S   V + + D NDN P      Y  +
Sbjct: 2759 GKLKLEKNLDHETTKWYQFSVVAQYTNEDYNVISSVEVSIQVRDANDNKPVLESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        ++  D DS  N 
Sbjct: 2819 IVENMPAGTRVIQ-------VKGTDLDSGLNG 2843



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 21   VLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +  T + LD E  A  I  ++VT   +     V  VIV +LD NDN P F Q  Y
Sbjct: 1197 ITTTSRKLDREQQAEHILEVTVTDNGIPAKSTVARVIVKVLDENDNKPQFLQKFY 1251



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LDYE  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 982  GAIRIVQRLDYEKKQLYNLTVRAKDKGKPISLSSTCYVEVEVVDVNENLHPPRFSVFADK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-ALLDGS 113
            G+V E APIG+ V+T ++       E +D E   ++ DGS
Sbjct: 1042 GFVKEDAPIGSSVMTVSAYD---EDEGRDGEIRYSIRDGS 1078



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T + LDYE   R+YNL + A++       +    V + + + NDN P F ++N  G
Sbjct: 518 GIISTSEDLDYELMPRVYNLRIRASDWGIPYRREVEVPVTIILNNLNDNIPLFEKINCEG 577

Query: 76  YVSEAAPIGALVLTNTSL 93
            +     +G  + T +++
Sbjct: 578 TIPRDLGVGEQITTVSAI 595


>gi|301770611|ref|XP_002920723.1| PREDICTED: protocadherin Fat 1-like [Ailuropoda melanoleuca]
          Length = 4587

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   +Y L +  TNMAG  +  +V+VH+ D NDN P FTQ  YT
Sbjct: 1711 INPHSGSIITQKALDFETVPVYALIIQGTNMAGLSSNTTVVVHLQDENDNLPVFTQAEYT 1770

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1771 GLISESASINSVVLTDKNVPLVIRATDADRESNALL 1806



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRN 62
            V   ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D N
Sbjct: 1496 VDPLSVRKFRLDPATGSLFTSETLDHEAVHQHILTVMVRDQDVPVKRNFARIIVNVSDTN 1555

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D+ P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1556 DHAPWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1594



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A     + + D ND+ P F   +Y   +S
Sbjct: 2233 GVISVIAPLDFESHPAYKLSIRATDSLTGAHADVFADIIVEDINDSPPVFVHQSYATTLS 2292

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2293 EASVIGTSVVQ-------VRATDSDSEPN 2314



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +YNL V AT+  G     ++++ + D NDN P F+  
Sbjct: 3068 KFTLNPDTGELRTLAPLDREEQGVYNLLVKATDGGGRSCQANLVLTLEDVNDNAPEFSAD 3127

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             YT  V E    G L+         ++A D+DS  N
Sbjct: 3128 PYTITVFENTEPGTLLTR-------VQATDRDSGLN 3156



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y+L++ A +    +   A  +V+V +LD NDN P F   +Y   
Sbjct: 3178 GIIQLEKPLDREQQAVYSLTLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYRDYGAT 3237

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3238 VSEDVLIGTEVLQ-------VYAVSRDIEANA 3262



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 18/103 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G +   + LDYE++R Y L++ A  M G       V +V +++ D NDN+P F+Q  YT 
Sbjct: 3284 GAIFVIENLDYESSREYYLTIEA--MDGGTPSLSDVATVSINVTDINDNSPVFSQDTYTA 3341

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
             VSE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3342 VVSEDALLEQSVIT-------VMADDADGPSNSHIRYSIIDGN 3377



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  V E A  
Sbjct: 2980 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTVPEDASP 3037

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3038 GQLILQ-------VSATDADIRSNA 3055



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V +   V + + D NDN+P      Y  +
Sbjct: 2757 GRLKLEKSLDHEITKWYQFSILARCTHDDYEVVASVDVSIQVKDANDNSPVLESNPYEAF 2816

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        +RA D DS TN 
Sbjct: 2817 IVENLPAGSRVIQ-------VRASDLDSGTNG 2841



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L+VT +++    KA   ++ V +LD NDN P F Q +Y   V
Sbjct: 771 GMLKILSPLDRETTDKYTLNVTVSDLGIPQKAAWRLLDVRVLDANDNPPEFLQESYFVEV 830

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 831 SEDKEINSEIIQ-------VEATDKD 849



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3384 VDPTRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSKGN 3443

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3444 YSVIIQENKPVGFSVLQ-----LVV--SDKDSSHNG 3472



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F+     
Sbjct: 980  GAVRIVQHLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLHPPVFSSFVEK 1039

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  P+G  ++T       + A D+D+  +     ++ DGS
Sbjct: 1040 GVVKEDVPVGFSIMT-------VSAHDEDTGRDGEVRYSIRDGS 1076



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++ ++ + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2545 GQIFTLEKLDRETPVEKVISVRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATRYEVDI 2604

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 2605 GSNAPKGTSVIK-------VLASDADEGSNA 2628



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T K LD E+   Y+L V AT+        + SV V I   ++ +P FT   
Sbjct: 1611 IDPILGSIKTAKELDRESQVEYDLMVKATDQGNPPMSEIASVRVFITVADNASPKFTSKE 1670

Query: 73   YTGYVSEAAPIGALVLTNTS 92
            Y+  +SE   IG+ V T T+
Sbjct: 1671 YSVEISETVGIGSFVGTVTA 1690



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1187 SVHPKTGLITTTSRKLDREQQDEHILEVTVTDNGIPPKSTIARVIVKILDENDNKPQFLQ 1246

Query: 71   LNY 73
              Y
Sbjct: 1247 KFY 1249



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD EA  ++ L + A + A  +    +   + V + D NDN P F   NY  
Sbjct: 874 GVVKVMRPLDREAQHVHYLKIEARDQAREEPQLLSTVLLKVSLEDVNDNPPKFVPPNYRV 933

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 934 KVREDLPEGTIIM 946



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    +A   V+V +L  N N P FTQ  Y     E
Sbjct: 417 GLISILEPIKRQQASHFELEVTTSDR---RASTRVLVKVLSANSNPPEFTQSAYKASFDE 473

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 474 NVPIGTTVMS 483



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P+LH  +      G + T   LDYE TR ++ +V   +M      A+  
Sbjct: 1802 SNALLVYHIVEPSLHKYFAIDSSTGAIHTVLSLDYEETRTFHFTVQVHDMGTPRLFAEYA 1861

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V + ++D ND  P F++  Y
Sbjct: 1862 ANVTIRVIDINDCPPVFSKSLY 1883



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 19/96 (19%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  K LD E    Y+L+V AT+  G  AV + V + ++D ND+ P F+   Y     
Sbjct: 1408 GTIIVAKALDAEQKSSYDLTVEATD--GTTAVLTQVFIKVIDTNDHRPQFSASKY----- 1460

Query: 79   EAAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                   +V+   ++P    L I A DKD E N L+
Sbjct: 1461 ------EVVIPEDTVPETEILQISAVDKD-EKNKLI 1489


>gi|281339742|gb|EFB15326.1| hypothetical protein PANDA_009494 [Ailuropoda melanoleuca]
          Length = 4593

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   +Y L +  TNMAG  +  +V+VH+ D NDN P FTQ  YT
Sbjct: 1717 INPHSGSIITQKALDFETVPVYALIIQGTNMAGLSSNTTVVVHLQDENDNLPVFTQAEYT 1776

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1777 GLISESASINSVVLTDKNVPLVIRATDADRESNALL 1812



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 9/106 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRN 62
            V   ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D N
Sbjct: 1496 VDPLSVRKFRLDPATGSLFTSETLDHEAVHQHILTVMVRDQDVPVKRNFARIIVNVSDTN 1555

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D+ P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1556 DHAPWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1594



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A     + + D ND+ P F   +Y   +S
Sbjct: 2239 GVISVIAPLDFESHPAYKLSIRATDSLTGAHADVFADIIVEDINDSPPVFVHQSYATTLS 2298

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2299 EASVIGTSVVQ-------VRATDSDSEPN 2320



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +YNL V AT+  G     ++++ + D NDN P F+  
Sbjct: 3074 KFTLNPDTGELRTLAPLDREEQGVYNLLVKATDGGGRSCQANLVLTLEDVNDNAPEFSAD 3133

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             YT  V E    G L+         ++A D+DS  N
Sbjct: 3134 PYTITVFENTEPGTLLTR-------VQATDRDSGLN 3162



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y+L++ A +    +   A  +V+V +LD NDN P F   +Y   
Sbjct: 3184 GIIQLEKPLDREQQAVYSLTLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYRDYGAT 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3244 VSEDVLIGTEVLQ-------VYAVSRDIEANA 3268



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 18/103 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G +   + LDYE++R Y L++ A  M G       V +V +++ D NDN+P F+Q  YT 
Sbjct: 3290 GAIFVIENLDYESSREYYLTIEA--MDGGTPSLSDVATVSINVTDINDNSPVFSQDTYTA 3347

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
             VSE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3348 VVSEDALLEQSVIT-------VMADDADGPSNSHIRYSIIDGN 3383



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  V E A  
Sbjct: 2986 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTVPEDASP 3043

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3044 GQLILQ-------VSATDADIRSNA 3061



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V +   V + + D NDN+P      Y  +
Sbjct: 2763 GRLKLEKSLDHEITKWYQFSILARCTHDDYEVVASVDVSIQVKDANDNSPVLESNPYEAF 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        +RA D DS TN 
Sbjct: 2823 IVENLPAGSRVIQ-------VRASDLDSGTNG 2847



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L+VT +++    KA   ++ V +LD NDN P F Q +Y   V
Sbjct: 771 GMLKILSPLDRETTDKYTLNVTVSDLGIPQKAAWRLLDVRVLDANDNPPEFLQESYFVEV 830

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 831 SEDKEINSEIIQ-------VEATDKD 849



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3390 VDPTRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSKGN 3449

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3450 YSVIIQENKPVGFSVLQ-----LVV--SDKDSSHNG 3478



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F+     
Sbjct: 980  GAVRIVQHLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLHPPVFSSFVEK 1039

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  P+G  ++T       + A D+D+  +     ++ DGS
Sbjct: 1040 GVVKEDVPVGFSIMT-------VSAHDEDTGRDGEVRYSIRDGS 1076



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++ ++ + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2551 GQIFTLEKLDRETPVEKVISVRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATRYEVDI 2610

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 2611 GSNAPKGTSVIK-------VLASDADEGSNA 2634



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T K LD E+   Y+L V AT+        + SV V I   ++ +P FT   
Sbjct: 1617 IDPILGSIKTAKELDRESQVEYDLMVKATDQGNPPMSEIASVRVFITVADNASPKFTSKE 1676

Query: 73   YTGYVSEAAPIGALVLTNTS 92
            Y+  +SE   IG+ V T T+
Sbjct: 1677 YSVEISETVGIGSFVGTVTA 1696



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1187 SVHPKTGLITTTSRKLDREQQDEHILEVTVTDNGIPPKSTIARVIVKILDENDNKPQFLQ 1246

Query: 71   LNY 73
              Y
Sbjct: 1247 KFY 1249



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD EA  ++ L + A + A  +    +   + V + D NDN P F   NY  
Sbjct: 874 GVVKVMRPLDREAQHVHYLKIEARDQAREEPQLLSTVLLKVSLEDVNDNPPKFVPPNYRV 933

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 934 KVREDLPEGTIIM 946



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    +A   V+V +L  N N P FTQ  Y     E
Sbjct: 417 GLISILEPIKRQQASHFELEVTTSDR---RASTRVLVKVLSANSNPPEFTQSAYKASFDE 473

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 474 NVPIGTTVMS 483



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P+LH  +      G + T   LDYE TR ++ +V   +M      A+  
Sbjct: 1808 SNALLVYHIVEPSLHKYFAIDSSTGAIHTVLSLDYEETRTFHFTVQVHDMGTPRLFAEYA 1867

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V + ++D ND  P F++  Y
Sbjct: 1868 ANVTIRVIDINDCPPVFSKSLY 1889



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 19/96 (19%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  K LD E    Y+L+V AT+  G  AV + V + ++D ND+ P F+   Y     
Sbjct: 1408 GTIIVAKALDAEQKSSYDLTVEATD--GTTAVLTQVFIKVIDTNDHRPQFSASKY----- 1460

Query: 79   EAAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                   +V+   ++P    L I A DKD E N L+
Sbjct: 1461 ------EVVIPEDTVPETEILQISAVDKD-EKNKLI 1489


>gi|149021384|gb|EDL78847.1| rCG59113 [Rattus norvegicus]
          Length = 4589

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 69/96 (71%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T++ LD+E   IY L+V  TNMAG     +V+VHI D NDN P FT+  Y+
Sbjct: 1713 INPHSGSIVTQRALDFETLPIYTLTVQGTNMAGLSTNTTVVVHIQDENDNPPAFTRAEYS 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1773 GFISESASVNSVVLTDKNVPLVIRATDADRESNALL 1808



 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y+  +S
Sbjct: 2235 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIVVEDINDNPPVFVQQSYSTTLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IGA +L        +RA D DSE N
Sbjct: 2295 EASVIGAPILQ-------VRATDSDSEPN 2316



 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D ND++P
Sbjct: 1502 SLKKFRLDPATGALYTSEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIIVNVSDMNDHSP 1561

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G++VL  T+L       D+D   NA
Sbjct: 1562 WFTSSSYEGRVYESAAVGSVVLQVTAL-------DRDKGRNA 1596



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V ++I D NDN+P F+Q +YT  V
Sbjct: 3286 GAIFIIENLDYESSHGYYLTVEATDGGTPSLSDVATVNINITDINDNSPVFSQDSYTTVV 3345

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       I A+D D  +N+
Sbjct: 3346 SEDAALEQPVIT-------IMADDADGPSNS 3369



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   KPLD E    Y L+V A +      V +  V+I   D NDN P F++ N
Sbjct: 3386 IDPVRGEIKVTKPLDRETISGYTLTVQAADNGNPPRVNTTTVNIDVSDVNDNAPLFSRDN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3446 YSVIIQENKPVGFSVLK-----LVVT--DKDSSHNG 3474



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+L  +K LD E   +Y L++ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3180 GILQLEKHLDRELQAVYTLTLKAADQGLPRKLTATGTVVVSVLDINDNPPVFEYREYGAT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3240 VSEDIVIGTEVLQ-------VYAASRDIEANA 3264



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H      P  G + T   LDYE TR+++ +V   +M      A+  
Sbjct: 1804 SNALLVYQIVEPSVHNYFAIDPTTGAIHTVLSLDYEETRVFHFTVQVHDMGTPRLFAEYA 1863

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V VH++D ND  P F++  Y
Sbjct: 1864 ANVTVHVIDINDCPPVFSKSLY 1885



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T   LD E   +Y+L V AT+  G     ++++ + D NDNTP FT  
Sbjct: 3070 KFKLNPDTGELRTLALLDREEQAVYHLLVKATDGGGRSCQATIVLTLEDVNDNTPEFT-- 3127

Query: 72   NYTGYVSEAAPIGALVLTNTS--LPLV-IRAEDKDSETN 107
                    A P    V  NT    PL  ++A D D+  N
Sbjct: 3128 --------ADPYAITVFENTEPGTPLTRVQATDADAGLN 3158



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            KKPLD E    Y L+VTAT+     +   V V +LD NDN+P   +  Y+  + E A  G
Sbjct: 2982 KKPLDREQKDSYLLTVTATD-GTFSSKARVEVKVLDANDNSPVCERTAYSDAIPEDALPG 3040

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV+        + A D D  +NA
Sbjct: 3041 KLVMQ-------VSATDADIRSNA 3057



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A   +   + V S  V + + D NDN+P      Y  +
Sbjct: 2759 GRLKLEKSLDHETTKWYQFSILARCTLDDYEVVASIDVSIQVKDANDNSPVLESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        +RA D DS  N 
Sbjct: 2819 IVENLPAGSRVIQ-------VRASDLDSGVNG 2843



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+   +  +  V++ ++D ND+ P F+   Y   V E
Sbjct: 1410 GTIIVAKPLDAEQKSSYNLTVEATD-GTSTILTQVLIKVIDTNDHRPQFSTSKYEVSVPE 1468

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   +L        I A D+D E N L+
Sbjct: 1469 DTEPETEILQ-------ISAVDRD-EKNKLI 1491



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    +A   ++ V +LD NDN P F Q +Y   V
Sbjct: 773 GMLKVLSPLDREVTDKYTLNITVYDLGIPQRAAWRLLDVTVLDANDNAPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 833 SEDKEINSEIIQ-------VEATDKD 851



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD EA   ++ ++ + A +  G  A C+V V + D NDN P F    Y   V
Sbjct: 2547 GQVFTLERLDREAPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRSTKYEVNV 2606

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2607 GSSAAKGTSVVK-------VFASDADEGSNA 2630



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2862 AINMETGWITTLKELDHEERASYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2921

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2922 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2949



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGVPPRSTIARVIVKILDENDNRPQFLQ 1248

Query: 71   LNYTGYVSEAAPI-GALVLTNTSLPLVIRAEDKDSETNALL 110
              Y   + E     G        L  VI A DKD   NA L
Sbjct: 1249 KFYKIRLPEREKADGDRSAKREPLYRVI-AADKDEGPNAEL 1288



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 8   FAIL----KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHIL 59
           +AIL    K A+    GV+   +PLD E  R++ L + A + A  +   S    + V + 
Sbjct: 860 YAILTDTEKFAIDRVTGVVKIIQPLDREVQRVHYLKIEARDQATEEPWLSSTVLLKVSLD 919

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
           D NDN P F   +Y+  V E  P G +++
Sbjct: 920 DVNDNPPRFIPPSYSVKVREDLPEGTIIM 948


>gi|13929168|ref|NP_114007.1| protocadherin Fat 1 precursor [Rattus norvegicus]
 gi|4426629|gb|AAD20459.1| protocadherin [Rattus norvegicus]
          Length = 4589

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 69/96 (71%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T++ LD+E   IY L+V  TNMAG     +V+VHI D NDN P FT+  Y+
Sbjct: 1713 INPHSGSIVTQRALDFETLPIYTLTVQGTNMAGLSTNTTVVVHIQDENDNPPAFTRAEYS 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1773 GFISESASVNSVVLTDKNVPLVIRATDADRESNALL 1808



 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y+  +S
Sbjct: 2235 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIVVEDINDNPPVFVQQSYSTTLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IGA +L        +RA D DSE N
Sbjct: 2295 EASVIGAPILQ-------VRATDSDSEPN 2316



 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D ND++P
Sbjct: 1502 SLKKFRLDPATGALYTSEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIIVNVSDMNDHSP 1561

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G++VL  T+L       D+D   NA
Sbjct: 1562 WFTSSSYEGRVYESAAVGSVVLQVTAL-------DRDKGRNA 1596



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V ++I D NDN+P F+Q +YT  V
Sbjct: 3286 GAIFIIENLDYESSHGYYLTVEATDGGTPSLSDVATVNINITDINDNSPVFSQDSYTTVV 3345

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       I A+D D  +N+
Sbjct: 3346 SEDAALEQPVIT-------IMADDADGPSNS 3369



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   KPLD E    Y L+V A +      V +  V+I   D NDN P F++ N
Sbjct: 3386 IDPVRGEIKVTKPLDRETISGYTLTVQAADNGNPPRVNTTTVNIDVSDVNDNAPLFSRDN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3446 YSVIIQENKPVGFSVLK-----LVVT--DKDSSHNG 3474



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+L  +K LD E   +Y L++ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3180 GILQLEKHLDRELQAVYTLTLKAADQGLPRKLTATGTVVVSVLDINDNPPVFEYREYGAT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3240 VSEDIVIGTEVLQ-------VYAASRDIEANA 3264



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H      P  G + T   LDYE TR+++ +V   +M      A+  
Sbjct: 1804 SNALLVYQIVEPSVHNYFAIDPTTGAIHTVLSLDYEETRVFHFTVQVHDMGTPRLFAEYA 1863

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V VH++D ND  P F++  Y
Sbjct: 1864 ANVTVHVIDINDCPPVFSKSLY 1885



 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T   LD E   +Y+L V AT+  G     ++++ + D NDNTP FT  
Sbjct: 3070 KFKLNPDTGELRTLALLDREEQAVYHLLVKATDGGGRSCQATIVLTLEDVNDNTPEFT-- 3127

Query: 72   NYTGYVSEAAPIGALVLTNTS--LPLV-IRAEDKDSETN 107
                    A P    V  NT    PL  ++A D D+  N
Sbjct: 3128 --------ADPYAITVFENTEPGTPLTRVQATDADAGLN 3158



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            KKPLD E    Y L+VTAT+     +   V V +LD NDN+P   +  Y+  + E A  G
Sbjct: 2982 KKPLDREQKDSYLLTVTATD-GTFSSKARVEVKVLDANDNSPVCERTAYSDAIPEDALPG 3040

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV+        + A D D  +NA
Sbjct: 3041 KLVMQ-------VSATDADIRSNA 3057



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A   +   + V S  V + + D NDN+P      Y  +
Sbjct: 2759 GRLKLEKSLDHETTKWYQFSILARCTLDDYEVVASIDVSIQVKDANDNSPVLESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        +RA D DS  N 
Sbjct: 2819 IVENLPAGSRVIQ-------VRASDLDSGVNG 2843



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+   +  +  V++ ++D ND+ P F+   Y   V E
Sbjct: 1410 GTIIVAKPLDAEQKSSYNLTVEATD-GTSTILTQVLIKVIDTNDHRPQFSTSKYEVSVPE 1468

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   +L        I A D+D E N L+
Sbjct: 1469 DTEPETEILQ-------ISAVDRD-EKNKLI 1491



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    +A   ++ V +LD NDN P F Q +Y   V
Sbjct: 773 GMLKVLSPLDREVTDKYTLNITVYDLGIPQRAAWRLLDVTVLDANDNAPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 833 SEDKEINSEIIQ-------VEATDKD 851



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2862 AINMETGWITTLKELDHEERASYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2921

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2922 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2949



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD EA   ++ ++ + A +  G  A C+V V + D NDN P F    Y   V
Sbjct: 2547 GQVFTLERLDREAPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRSTKYEVNV 2606

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2607 GSSAAKGTSVVK-------VFASDADEGSNA 2630



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 5/101 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGVPPRSTIARVIVKILDENDNRPQFLQ 1248

Query: 71   LNYTGYVSEAAPI-GALVLTNTSLPLVIRAEDKDSETNALL 110
              Y   + E     G        L  VI A DKD   NA L
Sbjct: 1249 KFYKIRLPEREKADGDRSAKREPLYRVI-AADKDEGPNAEL 1288



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 8   FAIL----KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHIL 59
           +AIL    K A+    GV+   +PLD E  R++ L + A + A  +   S    + V + 
Sbjct: 860 YAILTDTEKFAIDRVTGVVKIIQPLDREVQRVHYLKIEARDQATEEPWLSSTVLLKVSLD 919

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
           D NDN P F   +Y+  V E  P G +++
Sbjct: 920 DVNDNPPRFIPPSYSVKVREDLPEGTIIM 948


>gi|297747350|ref|NP_001177099.1| FAT tumor suppressor homolog 1 [Sus scrofa]
          Length = 4588

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   +Y L++  TNMAG     +V+VH+ D NDN+P F Q  YT
Sbjct: 1712 INPHSGSIITQKALDFETLPVYTLTIQGTNMAGLSTNTTVLVHLQDENDNSPVFMQSEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G VSE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 GLVSESASINSVVLTDRNVPLVIRATDADKESNALL 1807



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIVVEDINDNPPVFVQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA  IG  V+        +RA D DSE N
Sbjct: 2294 EATVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIIVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A IG++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAIGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNTPVFSQDTYTAVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDHGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3239 VSEDVLIGTEVLQ-------VYAASRDIEANA 3263



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 15/106 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            + F I K +     G L  +K LD+EAT+ Y  SV A        V +   V + + D N
Sbjct: 2749 EFFVIDKQS-----GRLKLEKSLDHEATKWYQFSVLARCSHDDYEVVASVDVSIQVKDAN 2803

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            DN+P      Y  ++ E  P G+ V+        IRA D DS TN 
Sbjct: 2804 DNSPVLESNPYEAFIVENLPAGSRVIQ-------IRASDLDSGTNG 2842



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E    YNL V AT+  G     ++++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSAPLDREEQATYNLLVKATDGGGRFCQANIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3129 PYTITVFENTEPGTLL 3144



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           GVL    PLD E T  Y+L++T +++    KA   ++ + +LD NDN P F Q +Y   V
Sbjct: 772 GVLKILSPLDRETTDRYSLNITVSDLGLPQKAAWRLLEIRVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 832 SEDKEINSEIIP-------VEATDKD 850



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   + LD EA   Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPARGEVKVTRLLDREAVSGYTLTVQASDNGSPPRVNTTTVNIDVSDINDNAPVFSKGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++  + E  P+G+ VL      LV+   D+DS  N 
Sbjct: 3445 HSVIIQENKPVGSSVLQ-----LVVT--DRDSSHNG 3473



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F      
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYVEVEVIDVNENLHPPVFPSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  PIG+ V+        + A D+D+  +     ++ DGS
Sbjct: 1041 GAVKENVPIGSSVMK-------VSAHDEDTGRDGEIHYSIRDGS 1077



 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPICEKTLYSDMIPEDAFP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A+++     + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDRYQIKVVASDLGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIIAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISAMDKD-EKNKLI 1490



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K +++P  G++   +P+  +    + L VT ++    KA   V+V +L  N + P FTQ 
Sbjct: 410 KFSINPNTGLISILEPIKRQQASHFELEVTTSDR---KASTRVLVKVLSANSHPPEFTQT 466

Query: 72  NYTGYVSEAAPIGALVLT 89
            Y     E  PIG  V++
Sbjct: 467 AYRASFDENVPIGTTVMS 484



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +   A +  G  A C++ V + D NDN P F    +   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVIPIRFMAKDAGGKVAFCTINVILTDDNDNAPQFRATKFEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                P G  V+        + A D D  +NA
Sbjct: 2606 GSNVPKGTSVIK-------VLASDADEGSNA 2629



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSIHKYFAIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGIPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V +H++D ND  P F++  Y
Sbjct: 1863 ANVTIHVIDINDCPPVFSKSLY 1884



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++ P  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SISPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250


>gi|432099002|gb|ELK28484.1| Protocadherin Fat 1 [Myotis davidii]
          Length = 3387

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 67/96 (69%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G ++T+K LD+E   IY L+V  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 712 INPHSGSIITQKALDFETLPIYTLTVQGTNMAGLSTNTTVLVHLQDENDNWPVFMQAEYT 771

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G VSE+A + ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 772 GLVSESASLNSVVLTDKNVPLVIRATDADKESNALL 807



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LSV AT+ + GA A   V + + D NDN P F Q  Y   +S
Sbjct: 1234 GVIHVIAPLDFEAHPAYKLSVRATDSLTGAHAEVFVDIVVEDINDNAPVFAQQAYAATLS 1293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 1294 EASVIGTSVVR-------VRATDADSEPN 1315



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 497 LSLKKFRLDPASGSLYTSETLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 556

Query: 66  PYFTQLNYTGYVSEAAPIGALVL 88
           P+FT  +Y G V E+A +G++VL
Sbjct: 557 PWFTSSSYEGRVYESAAVGSVVL 579



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  V
Sbjct: 2285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTAVV 2344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   VLT       + A+D D   N     +++DG+
Sbjct: 2345 SEDAILEQPVLT-------VMADDADGPLNSHIHYSIIDGN 2378



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L+V A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 2179 GIIQLEKPLDRELQAVYTLTVKAVDQGVPRRLTATGTVVVSVLDINDNPPVFEYREYGAS 2238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  +L        + A  +D E NA
Sbjct: 2239 VSEDVLVGTEILQ-------VYAASRDIEANA 2263



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A    G     A   V + + D NDN+P      Y  +
Sbjct: 1758 GRLKLEKSLDHETTKWYQFSILARCAHGDHELVASVDVSIQVKDANDNSPVLESNPYEAF 1817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        +RA D DS  N 
Sbjct: 1818 IVENQPGGSRVIQ-------VRASDLDSGANG 1842



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  G L T  PLD E   +YNL V AT+  G      V++ + D NDN P F+   +T
Sbjct: 2072 LNPDTGELKTLAPLDREEQAVYNLLVKATDGGGRFCQAHVVLTLEDVNDNAPEFSADPHT 2131

Query: 75   GYVSEAAPIGALV 87
              V E    G L+
Sbjct: 2132 ITVFENTEPGTLL 2144



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F Q N
Sbjct: 2385 IDPTRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFAQGN 2444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 2445 YSVIIQENKPVGFSVLQ-----LVVT--DKDSSHNG 2473



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 1981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDAFP 2038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 2039 GKLIMQ-------VAATDADIRSNA 2056



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E    YNL+V AT+   +  +  V + ++D ND+ P F+   Y   + E
Sbjct: 406 GTIIVAKPLDAEQKSDYNLTVEATD-GTSTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 464

Query: 80  -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP   +        L I A DKD E N L+
Sbjct: 465 DTAPETEI--------LQISAVDKD-EKNKLI 487



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  + + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 1546 GQVFTLEKLDREIPAEKVIPVRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATRYEVNI 1605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 1606 GSDAPKGTSVIK-------VLASDADEGSNA 1629



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 15  LHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
           +HP  G++ T  + LD E    + L VT T+        V  VIV ILD NDN P F Q 
Sbjct: 186 IHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPRSTVARVIVKILDENDNKPQFLQK 245

Query: 72  NY 73
            Y
Sbjct: 246 FY 247



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 10/82 (12%)

Query: 2   SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
           S+ + ++ I++P++H  +      G + T   LDYE T  +  +V   +M      A+  
Sbjct: 803 SNALLVYHIVEPSIHKYFAIDSSTGAIHTVLSLDYEETSTFRFTVQVHDMGTPRLFAEYA 862

Query: 52  CSVIVHILDRNDNTPYFTQLNY 73
            +V +H++D ND  P F++  Y
Sbjct: 863 ANVTIHVIDINDCPPVFSKSLY 884


>gi|431902348|gb|ELK08849.1| Protocadherin Fat 1 [Pteropus alecto]
          Length = 4588

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 67/96 (69%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L++  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGSVITQKALDFETLPIYTLTIQGTNMAGLSTNTTVLVHLQDENDNLPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRATDADKESNALL 1807



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LSV AT+ + GA A   V V + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFESHPAYKLSVRATDSLTGAHAEVFVDVIVEDVNDNPPVFVQQSYVATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVIQ-------VRATDSDSEPN 2315



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA    I  + V   ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEALDHEAIHQHILTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDRGKNA 1595



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  V
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVAAVNINVTDINDNTPVFSQDTYTAVV 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQSVYTLTLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGTT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE       +LT T + L + A  +D E NA
Sbjct: 3239 VSED------ILTGTEI-LQVYAASRDIEANA 3263



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLNPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  PIG+ V+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GIVKEDVPIGSSVMT-------VSAHDEDTGRDGEVRYSIRDGS 1077



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 37/73 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   IYNL V AT+  G     ++++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTLAPLDREEQAIYNLLVKATDGGGRFCQANIMLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIG 84
             YT  V E    G
Sbjct: 3129 PYTITVFENTEPG 3141



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 15/106 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            + F I K +     G L  +K LD+E T+ Y  S+ A        V +   V + + D N
Sbjct: 2749 EFFVIDKQS-----GRLKLEKSLDHETTKWYQFSILARCTHDDYEVVASVDVSIQVKDAN 2803

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            DN+P      Y  ++ E  P G+ V+        IRA D DS TN 
Sbjct: 2804 DNSPVLESNPYEAFIVENQPGGSRVIQ-------IRASDLDSGTNG 2842



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L++ A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPARGEVRVTKLLDRETISGYTLTIQASDNGSPPRVNTTTVNIDVSDVNDNAPIFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVT--DKDSSHNG 3473



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++TA ++    KA   ++ + +LD NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITAFDLGMPQKAAWHLLDIRVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   + + ++        + A DKD  +N 
Sbjct: 832 SEDKEVNSEIIQ-------VEATDKDLGSNG 855



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  + + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVIAVRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +AP G  V+        + A D D  +NA
Sbjct: 2606 GSSAPKGTSVIK-------VLASDADEGSNA 2629



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E +  
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDSFP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+   +  +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTSTILTQVFIKVIDTNDHRPQFSTSKYEVIIPE 1467

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   +L        I A DKD E N L+
Sbjct: 1468 DTGPETEILQ-------ISAVDKD-EKNKLI 1490



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT   Y G 
Sbjct: 2867 GWITTLKELDHERRDNYQIKVVASDYGEKVQLSSTAIVAVTVTDVNDSPPRFTAEIYKGT 2926

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            VSE  P G ++        ++   D DSE
Sbjct: 2927 VSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        V  +IV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTVARIIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K +L+   G++   +P+  +    + L VT ++    +A   V+V ++  N N P FTQ 
Sbjct: 410 KFSLNHNTGLISISEPIKRQQASYFELEVTTSD---KRASTRVLVKVISANSNPPEFTQT 466

Query: 72  NYTGYVSEAAPIGALVLT 89
            Y     E  PIG  V++
Sbjct: 467 AYKASFDENVPIGTTVMS 484



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSIHKYFAIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V +H++D ND  P F++  Y
Sbjct: 1863 ANVTIHVIDINDCPPVFSKSLY 1884



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      +V  V+V ++  D+NDN P F  L Y   
Sbjct: 2030 GVLSTTGIPFDREQQEAFDVVVEVTQEHKPSSVAHVVVKVIIEDQNDNAPVFVNLPYYAV 2089

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V     +G  + + T++       D+DS  N 
Sbjct: 2090 VKVDTAVGHTIRSVTAV-------DRDSGRNG 2114



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+   + LDYE  + + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2340 GVISLVRTLDYEQFQQHRIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFDQQLYEAKI 2399

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE A  G  V         ++A D DS
Sbjct: 2400 SEHATHGHFV-------TCVKAHDADS 2419



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPY 67
           K A+    GV+    PLD EA  ++ L + A + A  +    ++  + V + D NDN P 
Sbjct: 867 KFAIDSMTGVVRVVYPLDREAQPVHYLKIEARDQATEEPQLFSIVLLKVSLEDVNDNPPR 926

Query: 68  FTQLNYTGYVSEAAPIGALVL 88
           F   NY   V E  P G +++
Sbjct: 927 FIPPNYRVKVREDLPEGTIIM 947



 Score = 34.3 bits (77), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T   LD E+T  Y L+V AT+       +   + + + D NDN P  ++  Y   V
Sbjct: 1089 GVIETSDRLDRESTSHYWLTVYATDQGVVPLSSFTEIYIEVEDVNDNAPQTSEPVYYPEV 1148

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P    V+        I A D DS +N  L
Sbjct: 1149 MENSPKDVSVVQ-------IEAFDPDSSSNDKL 1174


>gi|118090437|ref|XP_420680.2| PREDICTED: protocadherin Fat 1 [Gallus gallus]
          Length = 4590

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 69/97 (71%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GV++++K LD+E   +Y L+V  TNMAG     +V+VH+ D NDN P F Q  Y
Sbjct: 1712 AINPNSGVIVSQKVLDFETLPVYTLTVQGTNMAGLSTNATVLVHLQDENDNIPIFMQSEY 1771

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            TG +SE+A + ++VLT+ ++PLVI+A D D E+NALL
Sbjct: 1772 TGLISESASVNSVVLTDKNVPLVIQATDADKESNALL 1808



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  L P  G L T + LD+E     I  + V   ++   +    VI+++ D ND+ P
Sbjct: 1502 SLKKFRLDPGTGSLYTTEKLDHETMNQHILTVMVRDQDVPVKRNYARVIINVSDTNDHAP 1561

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT  +Y G V E+A +G+ VL  T+L       DKD   NA
Sbjct: 1562 WFTSSSYEGRVYESAAVGSAVLQVTAL-------DKDKGKNA 1596



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ AT+    + + S   +IV +LD NDN P F    Y+  
Sbjct: 3180 GIIRLEKPLDRELQAVYTLTLRATDEGLPRRLSSTSNLIVSVLDINDNPPVFEYREYSAS 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        I A  +D E NA
Sbjct: 3240 VSEDTVVGTEVLQ-------IHAASRDIEANA 3264



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y L++ AT+ + GA A   V + + D NDN P FT+ +Y   +S
Sbjct: 2235 GVINVVAPLDFESHPAYKLNIRATDSLTGAHADVFVDIIVEDINDNAPVFTEQSYAVTLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        + A D DS TN
Sbjct: 2295 EASVIGTPVVQ-------VSATDADSGTN 2316



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 11/91 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +     LDYE++  Y L+V AT+  G  ++  V+   +++ D NDNTP F+Q  YT  
Sbjct: 3286 GAIFIIDSLDYESSHEYYLTVEATD-GGTPSLSDVVTVNINVTDINDNTPVFSQDTYTAV 3344

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +SE A +   V+T       + A+D D  +N
Sbjct: 3345 ISEDAVLEQSVIT-------VMADDADGPSN 3368



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  +S+ A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2547 GQIFTSEKLDRETQAEKVIAISLMAKDSGGKVAFCTVNVILTDDNDNAPQFRATEYEVNI 2606

Query: 78   SEAAPIGALVL----------TNTSLPLVIRAEDKDSETNALLD 111
                P G  V+          TN  +   I AE ++ + N  +D
Sbjct: 2607 GSDVPRGTSVIKVWASDADEGTNADITYTIEAESENVKENLEID 2650



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+  G  A  +V+ V +LD NDN+P   +  YT  V E A  
Sbjct: 2982 KKPLDREEKDHYLLNITATD--GTFATRAVVEVKVLDANDNSPVCEKALYTDTVPEDALP 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3040 GKLIMQ-------VSATDADIRSNA 3057



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      +   +V + + D NDN P F++ N
Sbjct: 3386 IDPSRGEIKVTKLLDREKISGYTLTVQASDNGSPPRRNTTTVNIDVSDVNDNPPVFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3446 YSIIIQENKPVGFSVLQ-----LVVT--DKDSSHNG 3474



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 4    PVQLFAILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHIL 59
            P Q   I++  A++   G + T K LD+E    Y ++V A +      + S   V V + 
Sbjct: 2851 PSQELDIIESFAINMETGWITTLKELDHEMRDKYKITVVAADRGEKIQLSSLAVVEVTVT 2910

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            D NDN P FT   Y G VSE  P G ++
Sbjct: 2911 DVNDNPPRFTAEIYKGTVSEDDPPGGII 2938



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E    YNL+VT  ++      A   + + ILD NDN P F Q +Y   V
Sbjct: 773 GMLKILSPLDREVKDKYNLNVTVYDLGIPQKSAWHLLDIRILDANDNPPEFLQDSYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   + + ++        I A DKD   N 
Sbjct: 833 SENKELDSEIIQ-------IEATDKDLGANG 856



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++   K LD+     YNL V AT+        V SV + +   ++ +P FT   
Sbjct: 1613 IDPILGMIKIAKELDHSNQEEYNLMVKATDKGDPPMNEVTSVHIFVTVSDNASPKFTAKE 1672

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE+A IG+ V
Sbjct: 1673 YSTEISESASIGSFV 1687



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T +P+  + +  + L V  ++    +A   V++ +L  N N P FTQ  Y     E
Sbjct: 419 GLITTSEPIKAQYSSHFELEVVTSDR---RASAKVLIKVLGMNSNPPEFTQTAYKASFDE 475

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PIG  V+        + A+D D   N  +
Sbjct: 476 NVPIGTSVMR-------VSAKDPDEGENGYV 499



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT + LDYE  + + L + A +  M    +   V V + D NDN P F QL Y   +
Sbjct: 2341 GLILTTRALDYEKIQQHKLLIRAVDGGMLPLSSDTVVTVDVTDLNDNPPLFNQLVYEAKI 2400

Query: 78   SEAAPIGALV 87
            SE AP G  V
Sbjct: 2401 SELAPRGHFV 2410



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            +++P  G++ T  + LD E  A  I  ++VT   +     V  VIV +LD NDN P F Q
Sbjct: 1189 SINPKTGLITTTSRKLDREQQAEHILEVTVTDNGIPAQSTVARVIVKVLDENDNKPQFLQ 1248

Query: 71   LNY 73
              Y
Sbjct: 1249 KFY 1251



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
            G L T  PLD E   +Y L V AT+  G     ++I+ + D NDN P FT
Sbjct: 3078 GELKTLMPLDREQQAVYYLLVKATDGGGRFCQANIILTLEDVNDNAPEFT 3127



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 22/104 (21%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  +PLD E    YNL+V AT+  G +++ + V + ++D N++ P F+   Y     
Sbjct: 1410 GTIIVARPLDAEQKSNYNLTVEATD--GTRSISTQVYIKVIDTNNHRPQFSASKY----- 1462

Query: 79   EAAPIGALVLTNTSLP----LVIRAEDKDSETNAL---LDGSTN 115
                   +V+   ++P    L + A D+D E N L   + GST+
Sbjct: 1463 ------EVVIPEDTVPETEILQVSATDRD-EKNKLIYTMQGSTD 1499



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  SV A        V S   V + + D NDN P      Y  +
Sbjct: 2759 GKLKLEKNLDHETTKWYQFSVLAQYTNEDYNVISSVEVSIQVKDANDNKPVLESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        ++  D DS  N 
Sbjct: 2819 IVENMPAGTRVIQ-------VKGTDLDSGLNG 2843



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LDYE  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 982  GAIRIVQRLDYEKKQLYNLTVRAKDKGKPISLSSTCYVEVEVVDVNENLHPPRFSVFADK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-ALLDGS 113
            G+V E APIG+ V+T ++       E +D E   ++ DGS
Sbjct: 1042 GFVKEDAPIGSSVMTVSAYD---EDEGRDGEIRYSIRDGS 1078



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T + LDYE   R+YNL + A++       +    V + + + NDN P F ++N  G
Sbjct: 518 GIISTSEDLDYELMPRVYNLRIRASDWGVPYRREVEVPVTIILNNLNDNIPLFEKINCEG 577

Query: 76  YVSEAAPIGALVLTNTSL 93
            +     +G  + T +++
Sbjct: 578 TIPRDLGVGEQITTVSAI 595


>gi|351696801|gb|EHA99719.1| Protocadherin Fat 1 [Heterocephalus glaber]
          Length = 4589

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 67/96 (69%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L++  TNMAG     +V+VH+ D NDN P F Q  Y+
Sbjct: 1713 INPHSGSIITQKALDFETLPIYTLTIQGTNMAGLSTNTTVLVHLQDENDNIPVFIQAEYS 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1773 GLISESASINSVVLTDRNVPLVIRATDADKESNALL 1808



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y+  +S
Sbjct: 2235 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFVQQSYSATLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2295 EASVIGTSVVK-------VRATDSDSEPN 2316



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D ND+ 
Sbjct: 1501 LSLKKFRLDPASGSLSTSEKLDHEAVHQHVLTVMVRDQDVPVKRNFARIIVNVSDTNDHA 1560

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A  G++VL  T+L       DKD   NA
Sbjct: 1561 PWFTSSSYEGRVYESAAAGSVVLQVTAL-------DKDKGKNA 1596



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  ++P  G L T  PLD E   +YNL V AT+  G     ++++ + D NDN P FT  
Sbjct: 3070 KFKVNPDTGELKTLAPLDREEQAVYNLLVRATDGGGRFCQANIVLPLEDVNDNAPQFTAD 3129

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3130 PYTVTVFENTEPGTLL 3145



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L + A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3180 GIIQLEKPLDRELQAVYTLVLKAVDQGLPRKLSATGTVVVSVLDINDNPPVFEYREYGAT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3240 VSEDILIGTEVLQ-------VYAASRDIEANA 3264



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +   + LDYE+   Y L+V AT+  G  ++  V    +++ D NDNTP F+Q  Y   
Sbjct: 3286 GAIFIIENLDYESAHEYYLTVEATD-GGTPSLSDVATANINVTDINDNTPSFSQDTYMAV 3344

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +SE A +   V+T       + A+D D  +N+L+
Sbjct: 3345 ISEDAVLEQSVIT-------VLADDADGPSNSLI 3371



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F+     
Sbjct: 982  GAVRIIQQLDFERKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLHPPVFSSFVEK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  PIG+ ++T       + A D+D+  +     ++ DGS
Sbjct: 1042 GVVKEDVPIGSSIMT-------VSAHDEDTGRDGEIQYSIRDGS 1078



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G +  +K LD+E T+ Y  S+ A        V +   V + + D NDNTP F    Y  +
Sbjct: 2759 GRVKLEKSLDHETTKWYQFSILARCTHDEYEVVASVDVSIQVKDANDNTPVFESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        +RA D DS  N 
Sbjct: 2819 IVENLPGGSRVIQ-------VRASDLDSGMNG 2843



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E   IY + V A++      + S   V V + D ND+ P FT 
Sbjct: 2862 AINMETGWITTLKELDHEERDIYQIKVVASDHGEKVQLSSTAIVAVTVADVNDSPPRFTA 2921

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2922 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2949



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 19/96 (19%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  KPLD E    YNL+V AT+  G  A+ S V++ ++D ND+ P F+   Y     
Sbjct: 1410 GTIVIAKPLDAEQKSNYNLTVEATD--GTTAIHSQVLIKVIDTNDHRPQFSTSKY----- 1462

Query: 79   EAAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                   +V+   ++P    L I A DKD E N L+
Sbjct: 1463 ------EVVIPEDTVPETEILQISAMDKD-EKNKLI 1491



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L++ A++      V +  V+I   D NDN P F++ N
Sbjct: 3386 IDPVKGEVKVTKLLDRETISGYTLTIQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3446 YSVIIQENKPVGFSVLQ-----LVVT--DKDSSHNG 3474



 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2982 KKPLDREKKDSYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDALP 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3040 GKLIVQ-------VSATDADIRSNA 3057



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2547 GQVFTLEKLDRETLAEKVISVRLMAKDTGGKVAFCTINVILTDDNDNAPQFRATKYEVNI 2606

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2607 GSSAAKGTSVMK-------VFASDTDEGSNA 2630



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    KA   ++ + ILD NDN P F Q +Y   V
Sbjct: 773 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLDIIILDANDNPPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +E   I + ++        + A DKD  +N 
Sbjct: 833 NEDKEINSEIIQ-------VEATDKDLGSNG 856



 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRRLDREQQDEHILEVTVTDNGTPPKSTIARVIVKILDENDNKPQFLQ 1248

Query: 71   LNY 73
              Y
Sbjct: 1249 KFY 1251



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T +++ +V   +M      A+  
Sbjct: 1804 SNALLVYHIVEPSVHKYFAIDSTTGAIHTVLSLDYEETSVFHFTVQVHDMGTPRLFAEYA 1863

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V +H++D ND  P F++  Y
Sbjct: 1864 ANVTIHVIDINDCPPVFSKSLY 1885



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K +L+   G++   +P+  +    +   VT ++    KA   V+V +L  N N P FTQ 
Sbjct: 411 KFSLNHNTGLISILEPIRRQQASHFEFEVTTSDQ---KASTKVLVKVLSANSNPPEFTQT 467

Query: 72  NYTGYVSEAAPIGALVL 88
            Y     E A IG  VL
Sbjct: 468 AYKASFDENASIGTTVL 484



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E   ++ L + A + A G   + S +   V + D NDN P F   NY  
Sbjct: 876 GVVKIVHPLDREVQHVHYLKIEARDQAKGEPQLFSTVLLKVSLEDVNDNPPKFIPPNYRV 935

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 936 KVREDLPEGTIIV 948



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE  + + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2341 GLISLLRTLDYEQFQQHKIFVRAIDGGMPPLSSDVIVTVDVTDLNDNPPLFDQQIYEAKI 2400

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE A  G  V       + ++A D DS
Sbjct: 2401 SEHATHGHFV-------MCVKAYDADS 2420


>gi|297674808|ref|XP_002815402.1| PREDICTED: protocadherin Fat 1 [Pongo abelii]
          Length = 4588

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 67/96 (69%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN+P F Q  YT
Sbjct: 1712 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNSPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1772 GLISESASINSVVLTDRNIPLVIRATDADKDSNALL 1807



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   +  +V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTFTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLLRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDIVVGTEVLQ-------VYAASRDIEANA 3263



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       + A+D D  +N+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNS 3368



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELRTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFS-- 3126

Query: 72   NYTGYVSEAAPIGALVLTNTS-LPLVIRAEDKDSET 106
                      P    V  NT    L+ RA+  D++T
Sbjct: 3127 --------VDPYAVTVFENTEPGTLLTRAQATDADT 3154



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPIFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE +R + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 2399

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2400 SEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KAV  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAV--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3039 GKLIMQ-------ISATDADIRSNA 3056



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN---MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++   M    +   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEMIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E    Y L+VT  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETADKYTLNVTVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHKYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V VH++D ND  P F +
Sbjct: 1863 ANVTVHVIDINDCPPVFAK 1881



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E APIG+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPIGSLVMT-------VSAHDEDAGRDGEIHYSIRDGS 1077


>gi|395839907|ref|XP_003792813.1| PREDICTED: protocadherin Fat 1 [Otolemur garnettii]
          Length = 4588

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGSIITQKSLDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNLPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRATDSDKESNALL 1807



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LSV AT+ + GA A   V + + D NDN P F   +Y   +S
Sbjct: 2234 GVINVIAPLDFESHPAYKLSVRATDSLTGAHAEVFVDIVVEDINDNPPVFAHQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVH-------VRATDSDSEPN 2315



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA    I  + V   ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAIHQHILTVMVRDQDVPVKRNFARIVVNVSDMNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQITAL-------DKDKGENA 1595



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L+V A +    +   A  SVIV +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLTVKAVDQGLPRRLTATSSVIVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3239 VSEDILIGTEVLQ-------VYAASRDIEANA 3263



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAILEQSVIT-------VMADDADGPSNSHIRYSIIDGN 3378



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A    N     A   V + + D NDN+P      Y  +
Sbjct: 2758 GRLKLEKGLDHETTKWYQFSILARCTHNDNEIVASVEVSIQVKDANDNSPVLESNPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P G+ V+        IRA D DS TN 
Sbjct: 2818 VVENLPGGSRVIQ-------IRASDLDSGTNG 2842



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2981 KKPLDREQKDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDALP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G LV+        I A D D  +NA
Sbjct: 3039 GKLVMQ-------ISATDADIRSNA 3056



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  + T  + L VT ++    KA   V+V IL  N N P F+Q  Y     E
Sbjct: 418 GLISILEPIKKQQTSHFELEVTTSDR---KASTKVLVKILGANSNPPEFSQTAYKASFDE 474

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PIG  +++       + AED D   N  +
Sbjct: 475 NVPIGTTIMS-------VSAEDPDEGENGYV 498



 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   + LD E    Y L+V A++      V +  V+I   D NDN P F+Q NY+  V
Sbjct: 3390 GEVKVTRLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPAFSQENYSLIV 3449

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  P+G  VL      LV+   DKDS  N 
Sbjct: 3450 QENKPVGFSVLQ-----LVVT--DKDSSHNG 3473



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V   +        + C + V ++D N+N   P F      
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRVKDKGKPTSLSSTCYIEVEVIDVNENLYPPVFPSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  P+G+ V+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GIVKEDVPLGSSVMT-------VSAHDEDTGRDGEIRYSIRDGS 1077



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 10/89 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    Y + V A++      + S   V V I D ND+ P FT   Y G 
Sbjct: 2867 GWITTLKELDHEKRANYQIKVVASDHGEKVQLSSTAVVDVTITDVNDSPPRFTAEIYKGT 2926

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            VSE  P G ++        ++   D DSE
Sbjct: 2927 VSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTITRVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 34/68 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L     LD E   +YNL V AT+  G     ++++ + D NDN P FT  
Sbjct: 3069 KFKLNPDTGELKILTALDREHQAVYNLLVKATDGGGRFCEANIVLTLEDVNDNPPEFTAD 3128

Query: 72   NYTGYVSE 79
             YT  V E
Sbjct: 3129 PYTIAVFE 3136



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 16/95 (16%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            GVL T   P D E   ++++ V  T      AV  V+V   I D+NDN P F  L     
Sbjct: 2030 GVLSTTGIPFDREQQEVFDVVVEVTEEKRPSAVAHVVVKVTIEDQNDNAPVFVNL----- 2084

Query: 77   VSEAAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
                 P  A+V  +T +  VIR   A D+DS  N 
Sbjct: 2085 -----PYYAVVKVDTEVDHVIRYVTAVDRDSGKNG 2114



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHKYFAIDSNTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V +H++D ND  P F++  Y
Sbjct: 1863 ANVTIHVIDINDCPPVFSKSVY 1884



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F    Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFATSKYEVTIPE 1467

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                    +  T + L I A DKD E N L+
Sbjct: 1468 DT------VPETEI-LQISAVDKD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  + + A +  G  A C++ + + D NDN P F    Y   +
Sbjct: 2546 GQVFTLEKLDRETPAEKVIPVRLMAKDTGGKVAFCTINIILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  GA ++        + A D D  +NA
Sbjct: 2606 GSGAAKGASIIK-------VLASDADEGSNA 2629



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E    Y+L++T  ++    KA   ++ + +LD NDN P F Q +Y   V
Sbjct: 772 GMLKVFSPLDRETKDRYSLNITVYDLGIPQKATWHLLDLIVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVNSEIIQ-------VEATDKD 850


>gi|47216301|emb|CAF96597.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2244

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 65/96 (67%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV++T++PLDYE T  Y L +  TNMAG     +++VH+ D NDN P F Q  + 
Sbjct: 466 INPNSGVVVTQRPLDYETTAQYTLVIQGTNMAGLGTNTTLLVHLKDENDNAPIFIQKEFR 525

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G VSE+AP+ ++VLT  + PLV+RA D D + NA+L
Sbjct: 526 GVVSESAPVNSVVLTRENTPLVVRASDADGDQNAML 561



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLDYEA+  Y ++V AT+        + +V +++ D NDN P F+Q 
Sbjct: 2034 SVDPRTGDIFVIQPLDYEASHEYYITVEATDGGSPPLSDMATVNINLTDVNDNRPVFSQD 2093

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             YT  VSE A +G  V+T       + AED D
Sbjct: 2094 VYTAVVSEDAELGKTVIT-------VNAEDLD 2118



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 9/103 (8%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATR--IYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
           F++ K  L P  G L T + LD+E     I  + V   ++   + +  VIV++ D NDN 
Sbjct: 254 FSLRKFRLDPGTGTLYTAETLDHETMHHHILTVMVRDQDIPVKRNLVRVIVNVDDTNDNA 313

Query: 66  PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           P+F    ++G V E+A +G+ VL        + A DKD   NA
Sbjct: 314 PWFVGAPFSGRVFESAAVGSAVLQ-------VTARDKDKGRNA 349



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LDYE  R + L V A +  G  A+ S   V + + D NDN P FTQ  Y   
Sbjct: 1094 GTISTAQLLDYEEIRQHELRVRAVDR-GVPALSSEVIVTIDVTDLNDNAPEFTQQTYNST 1152

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  +         ++A D DS
Sbjct: 1153 ISELAPRGHFITQ-------VQASDADS 1173



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+   +PLD+E    Y LSV AT+ + GA +   V + + D NDN P F    Y   VS
Sbjct: 988  GVIHVIQPLDFETHPAYKLSVRATDSLTGAHSDVFVDIILEDVNDNAPVFLSKAYHANVS 1047

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ +G  +L        + A+D D+  N
Sbjct: 1048 EASVVGTRILQ-------VDAKDSDTGNN 1069



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 22   LLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            +  KKPLD E    Y L++TA++ +  AKA  +V V +LD NDN+P   +  Y+  V E 
Sbjct: 1734 VFVKKPLDREEKDNYLLNITASDGIFTAKA--TVEVKVLDANDNSPQCEKALYSESVPEN 1791

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +P G L+L        + A D D  +NA +
Sbjct: 1792 SPAGRLILQ-------VSASDADIRSNAQI 1814



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-TATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y   + + T       V SVIV+I   D NDN P F    Y   
Sbjct: 1512 GALKLQKSLDHETTKWYQFLLHSQTKHENFDIVASVIVNIQVKDVNDNKPVFESDPYEAV 1571

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P G  V+        +RA D+DS TN 
Sbjct: 1572 VVENLPSGTQVIQ-------VRASDQDSGTNG 1596



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  ++PLD E    Y L   A++    +  +VC V+V +LD NDN P F    YT  V
Sbjct: 1935 GVISLERPLDRELQSTYELRALASDQGLPRLSSVCQVVVSVLDINDNPPVFEHREYTATV 1994

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE   +G  +L        ++A  +D+E N 
Sbjct: 1995 SEDVSVGTQLLR-------VQAASRDTEANG 2018



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
            A++   G + T K LD E  + Y ++V AT+            V V + D NDN P FT 
Sbjct: 1616 AVNSETGWVTTLKELDREKMQRYTIAVLATDQGDRIQHATGTRVEVTVADVNDNPPRFTA 1675

Query: 71   LNYTGYVSEAAP 82
              Y G VSE  P
Sbjct: 1676 EIYKGTVSEDDP 1687



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++  +S+ A +  G    C V V + D NDN P F   +Y   +
Sbjct: 1300 GEIFTLESLDRENNMEKVVPISLVARDGGGKVGFCVVNVILTDINDNAPQFRAADYKSTI 1359

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            +   P G  V+        I A D D  +NA ++ S
Sbjct: 1360 ASDVPRGTSVVR-------ISASDLDEGSNADIEYS 1388



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L T +PLD E    +   + A +  G    C   +H++  D NDN P F+   YT  V
Sbjct: 1833 GELKTLQPLDREEQEEHRFKMRAVD--GGGRYCEADIHVVVEDVNDNLPQFSADLYTVTV 1890

Query: 78   SEAAPIGALV 87
             E   IG  V
Sbjct: 1891 FENTEIGTYV 1900


>gi|229442259|gb|AAI72772.1| FAT tumor suppressor 1 precursor [synthetic construct]
          Length = 990

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 622 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 681

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 682 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 717



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
            ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 410 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 469

Query: 66  PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 470 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 505



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14  ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
           ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 98  SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 157

Query: 71  LNY 73
             Y
Sbjct: 158 KFY 160



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 319 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 377

Query: 80  -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP   +        L I A D+D E N L+
Sbjct: 378 DTAPETEI--------LQISAVDQD-EKNKLI 400



 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 7   LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
           ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+   +V V
Sbjct: 718 VYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTV 777

Query: 57  HILDRNDNTPYFTQ 70
           H++D ND  P F +
Sbjct: 778 HVIDINDCPPVFAK 791


>gi|119625021|gb|EAX04616.1| FAT tumor suppressor homolog 1 (Drosophila), isoform CRA_c [Homo
           sapiens]
          Length = 2228

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 102 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 161

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 162 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 197



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 624 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAVTLS 683

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
           EA+ IG  V+        +RA D DSE N
Sbjct: 684 EASVIGTSVVQ-------VRATDSDSEPN 705



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 1569 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 1628

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 1629 VSEDILVGTEVLQ-------VYAASRDIEANA 1653



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 14/109 (12%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K ++    G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+
Sbjct: 1667 KFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFS 1726

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            Q  YT  +SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 1727 QDTYTTVISEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 1768



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 1148 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 1207

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 1208 IVENLPGGSRVIQ-------IRASDADSGTNG 1232



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 1459 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSAD 1518

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 1519 PYAITVFENTEPGTLL 1534



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 1775 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 1834

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 1835 YSVIIQENKPVGFSVLQ-----LVVTDED 1858



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++   + LDYE +R + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 730 GLISLLRTLDYEQSRQHTIFVRAVDGGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 789

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDS 104
           SE AP G  V         ++A D DS
Sbjct: 790 SEHAPHGHFV-------TCVKAYDADS 809



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 1251 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 1310

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 1311 EIYKGTVSEDDPQGGVI-------AILSTTDADSE 1338



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 1371 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 1428

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 1429 GKLIMQ-------ISATDADIRSNA 1446



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 936  GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 995

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 996  GSSAAKGTSVVK-------VLASDADEGSNA 1019



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2   SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
           S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 193 SNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 252

Query: 52  CSVIVHILDRNDNTPYFTQ 70
            +V VH++D ND  P F +
Sbjct: 253 ANVTVHVIDINDCPPVFAK 271


>gi|119625019|gb|EAX04614.1| FAT tumor suppressor homolog 1 (Drosophila), isoform CRA_a [Homo
            sapiens]
          Length = 3377

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1807



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAVTLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K ++    G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+
Sbjct: 3277 KFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFS 3336

Query: 70   QLNYTGYVSEAAPIGALVLTNT 91
            Q  YT  +SE A +   V+T T
Sbjct: 3337 QDTYTTVISEDAVLEQSVITVT 3358



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 40.8 bits (94), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P F Q  Y   
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYEAR 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPQGGVI-------AILSTTDADSE 2948



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3039 GKLIMQ-------ISATDADIRSNA 3056



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVVK-------VLASDADEGSNA 2629



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V VH++D ND  P F +
Sbjct: 1863 ANVTVHVIDINDCPPVFAK 1881



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E    ++L + A + A  +    +   V V + D NDN P F   NY  
Sbjct: 875 GVVNIARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTVIM 947


>gi|119625020|gb|EAX04615.1| FAT tumor suppressor homolog 1 (Drosophila), isoform CRA_b [Homo
            sapiens]
          Length = 3841

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1715 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1775 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1810



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2237 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAVTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2297 EASVIGTSVVQ-------VRATDSDSEPN 2318



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 3182 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 3241

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3242 VSEDILVGTEVLQ-------VYAASRDIEANA 3266



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3288 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3347

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3348 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3381



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2761 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2820

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2821 IVENLPGGSRVIQ-------IRASDADSGTNG 2845



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3072 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSAD 3131

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3132 PYAITVFENTEPGTLL 3147



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3388 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3447

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3448 YSVIIQENKPVGFSVLQ-----LVVTDED 3471



 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P F Q  Y   
Sbjct: 2343 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYEAR 2401

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2402 ISEHAPHGHFV-------TCVKAYDADS 2422



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2864 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2923

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2924 EIYKGTVSEDDPQGGVI-------AILSTTDADSE 2951



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2984 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3041

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3042 GKLIMQ-------ISATDADIRSNA 3059



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2549 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2608

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2609 GSSAAKGTSVVK-------VLASDADEGSNA 2632



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1806 SNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1865

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V VH++D ND  P F +
Sbjct: 1866 ANVTVHVIDINDCPPVFAK 1884



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E    ++L + A + A  +    +   V V + D NDN P F   NY  
Sbjct: 875 GVVNIARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTVIM 947


>gi|327273774|ref|XP_003221655.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1-like [Anolis
            carolinensis]
          Length = 4585

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 68/96 (70%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ ++K LD+E    Y+L++  TNMAG  A  +++VH+ D+NDN P F Q  YT
Sbjct: 1713 INPNSGVITSQKTLDFETLSFYSLTIQGTNMAGQSANTTLLVHLQDKNDNAPTFMQTEYT 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A   ++VLT+  +PLVIRA D D ++NALL
Sbjct: 1773 GHISESASANSVVLTDRHVPLVIRATDADKDSNALL 1808



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+ T  PLD+E+   Y LS+ AT+ + GA A   V + I D NDN P FT+  YT  +S
Sbjct: 2235 GVINTFAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIVIEDINDNPPLFTEQFYTATLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EAA IG  V+        + A D DS TN
Sbjct: 2295 EAAVIGTSVVR-------VWATDADSGTN 2316



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 9/110 (8%)

Query: 1    MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHI 58
            M   V   ++ K  L P  G L T + LD+E    + L+V     ++   +    VI+++
Sbjct: 1494 MQSSVDPVSLKKFHLDPATGSLYTSEKLDHEVIHQHVLTVMVRDQDVPVKRNFARVIINV 1553

Query: 59   LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             D ND+ P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1554 SDTNDHAPWFTSSSYKGRVFESAAVGSMVLQVTAL-------DKDKGENA 1596



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KPLD E    Y L++TAT+ M   KAV  V V +LD NDN+P   ++ YT  + E AP 
Sbjct: 2982 RKPLDREVKDNYLLNITATDGMFATKAV--VEVKVLDSNDNSPVCEKMLYTETIPEDAPP 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3040 GKLIMQ-------ILATDADIRSNA 3057



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++L  + LDYE +R + L V A  + M    +   V V I D NDN P F QL Y   +
Sbjct: 2341 GIILISRSLDYEQSRQHTLLVRAIDSGMPPLSSDVVVTVGITDLNDNPPVFNQLLYEANI 2400

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D D+
Sbjct: 2401 SELAPRGHFV-------TCVKASDADT 2420



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V + ++D N+N   P F      
Sbjct: 982  GAIRIVQGLDFERKQMYNLTVRAKDKGKPISMSSTCYVEIEVVDVNENLHPPRFPNFVDK 1041

Query: 75   GYVSEAAPIGALVLT 89
            G+V+E  PIG+LV+T
Sbjct: 1042 GFVNEDVPIGSLVMT 1056



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 16/102 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +     LDYE++  Y L+V AT+  G  ++  V+   +++ D NDNTP F+Q  YT  
Sbjct: 3284 GAIFIIGGLDYESSPEYYLTVEATD-GGTPSLSDVVTVNINVTDINDNTPVFSQDTYTAV 3342

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            +SE A +   V+T       + A D D   N     +++DG+
Sbjct: 3343 ISEDAEVEQSVVT-------VMAADSDGPLNSHIRYSIIDGN 3377



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y ++V A++      + S   V V + D NDN P FT 
Sbjct: 2862 AINAETGWITTLKELDHEKQNKYKITVVASDRGEKVQLTSTAVVEVSVTDVNDNPPRFTA 2921

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G +V        ++   D DSE
Sbjct: 2922 EIYKGTVSEDDPTGGVV-------AILSTTDADSE 2949



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  SV A  +     V S +   + I D NDN P      Y  +
Sbjct: 2759 GKLKLEKSLDHETTKWYQFSVLAYYVNEDYKVVSSVDISIQIRDVNDNKPVIESNPYKAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        I+A D+DS +N 
Sbjct: 2819 IVENMPAGTRVIQ-------IKATDQDSGSNG 2843



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  + + A +  G  A CSV V + D NDN P F    Y   +
Sbjct: 2547 GQIFTSEKLDRETPAEKVIFIRLMAKDSGGKVAFCSVNVILTDVNDNAPLFRATEYEVNI 2606

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            S   P G  V+        + A D D  TNA
Sbjct: 2607 SSDVPRGTSVIK-------VLASDADEGTNA 2630



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G++ T  P+  + +  ++  +  ++    KA   V++ ++D N ++P FTQ++Y 
Sbjct: 414 LNPHTGLITTLDPIKAQYSSSFDFEIMTSDR---KASTRVLIEVIDVNTHSPEFTQMSYK 470

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               E  PIG  V+        + A+D D   N  +
Sbjct: 471 ASFDENVPIGTSVMR-------VNAKDLDEGENGYV 499



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 33/66 (50%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +L P  G L T   LD E   +Y   V A++  G     ++I++I D NDN P FT   Y
Sbjct: 3072 SLSPDTGELKTLAALDREQKSVYTFMVKASDGGGRFCQANIILNIEDVNDNIPEFTTDPY 3131

Query: 74   TGYVSE 79
            T  V E
Sbjct: 3132 TITVFE 3137



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-CSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  KPLD E    YNL+V AT+  G + +   V + ++D ND+ P F+   Y   + 
Sbjct: 1410 GTIVVAKPLDAEQKSNYNLTVEATD--GTRTIGTQVYIKVIDTNDHRPEFSTSEYQVIIP 1467

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E        +  T + L + A DKD E N L+
Sbjct: 1468 EDT------MPETEI-LQVSASDKD-EKNKLI 1491



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G + T K LD  +   Y L V AT+        V SV + +   ++ +P FT   
Sbjct: 1613 IHPILGSITTAKELDQSSQEEYTLMVRATDKGSPPMSEVTSVHISVTISDNASPKFTMRE 1672

Query: 73   YTGYVSEAAPIGALV 87
            Y+  + E   IG+ V
Sbjct: 1673 YSTEIGEGCSIGSFV 1687



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      + +  V+I   D NDN P F++ N
Sbjct: 3384 IDPTLGEVKVAKLLDREKISGYTLTVQASDNGNPPGINTTTVNIDVSDVNDNPPVFSKGN 3443

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  +         +   DKDS  N 
Sbjct: 3444 YSIIIQENKPVGFNIQQ-------LEVTDKDSSHNG 3472



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 19/120 (15%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE    +  SV  ++M      A+  
Sbjct: 1804 SNALLVYQIVEPSVHKYFTIDSSTGAIRTVMSLDYEERNTFRFSVQVSDMGTPRLFAEYA 1863

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
             +V + ++D ND  P F++  Y   V        LV T   + +V + A D DSET + L
Sbjct: 1864 ANVTIRVIDINDCPPVFSKDLYEATV--------LVPTYKGVKVVMVNATDADSETFSRL 1915



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+   +K LD E   +Y+L++        + + S   ++V +LD NDN P F    Y+  
Sbjct: 3178 GMXQLEKALDRELQPVYSLTLKGKMKDSPRRLSSTGILVVSVLDINDNPPVFEYREYSAT 3237

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE A  G  +L        + A  +D E NA
Sbjct: 3238 VSEDAVAGIEILQ-------VYAASRDIEANA 3262



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 17/102 (16%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSVIVHILDRNDNTP 66
           A+HP  GV++    LDY  +++Y + + A +        +G  ++  + V+I   N++ P
Sbjct: 197 AIHPTSGVIVLTGRLDYSESKVYEMEILAVDRGMKLYGSSGISSMARLTVYIEQANEHAP 256

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             T L  T    +  P+ A          V+  ED+D  +N 
Sbjct: 257 VITALTLTPSELDNDPVYA----------VVTVEDRDHGSNG 288



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 8/80 (10%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNY 73
           GV+ T + +DYE   R+Y L V A++         +A  +++++ L  NDNTP F ++N 
Sbjct: 518 GVISTSENMDYELMPRVYKLRVRASDWGTPYRREVEAPVTIVLNNL--NDNTPLFEKINC 575

Query: 74  TGYVSEAAPIGALVLTNTSL 93
            G +     +G  + T +++
Sbjct: 576 EGTIPRELGVGEQITTVSAI 595



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            +++P  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1189 SMNPKTGLITTTSRKLDREQQSEHILEVTVTDNGIPPKSTLARVIVKILDENDNRPQFLQ 1248

Query: 71   LNY 73
              Y
Sbjct: 1249 KFY 1251



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTG 75
           G++     LD EA  ++ L + A + A  ++  S    + V + D NDN P F  LNY  
Sbjct: 876 GIVKVIGSLDREAQSVHFLKIEARDQAKEESQLSSTVLLKVSLEDVNDNPPKFIPLNYRV 935

Query: 76  YVSEAAPIGALV 87
            + E  P G ++
Sbjct: 936 KIREDLPEGTII 947


>gi|444705648|gb|ELW47051.1| Protocadherin Fat 1 [Tupaia chinensis]
          Length = 4584

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G + T+K LD+E   +Y L++  TNMAG     +++VH+ D NDN P F Q  YT
Sbjct: 1706 INPHSGSIFTQKALDFETLPVYTLTIQGTNMAGLSTNTTLLVHLQDENDNQPVFMQTEYT 1765

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1766 GLISESASINSVVLTDRNVPLVIRATDADKESNALL 1801



 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2228 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHADVFVDIIVEDINDNAPVFVQQSYAATLS 2287

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2288 EASVIGTSVIQ-------VRATDSDSEPN 2309



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1494 LSLKKFRLDPATGSLYTSEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1553

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E++ +G++VL  T+L       DKD   NA
Sbjct: 1554 PWFTSSSYEGRVYESSAVGSVVLQVTAL-------DKDKGQNA 1589



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   IYNL V AT+  G     ++++ + D NDN P F+  
Sbjct: 3063 KFKLNPDTGELKTLAPLDREEQAIYNLVVKATDGGGRFCQANIVLTLEDVNDNAPEFSAD 3122

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3123 PYTITVFENTEPGTLL 3138



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y LS+TAT+    +KA+  V V +LD NDN+P   +  Y   + E AP 
Sbjct: 2975 KKPLDREKRDNYLLSITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYADTIPEDAPP 3032

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3033 GKLIMQ-------VSATDADIRSNA 3050



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F+     
Sbjct: 977  GAIRIVQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYVEVEVIDVNENLHPPVFSSFVEK 1036

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            G V E  PIG+ V+T       + A D+D
Sbjct: 1037 GIVKEDVPIGSSVMT-------VSAHDED 1058



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V +   V + + D NDN+P      Y  +
Sbjct: 2752 GRLKLEKRLDHETTKWYQFSILARCTRDDYEVVASVEVSIQVKDANDNSPLLESNPYEAF 2811

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2812 IVENLPAGSRVIQ-------IRASDLDSGTNG 2836



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F+Q N
Sbjct: 3381 IDPVKGEVKVTKLLDRETISGYTLTVQASDNGNPPRVNTTTVNIDVSDVNDNAPVFSQGN 3440

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3441 YSVIIQENKPVGFSVLQ-----LVVT--DKDSSHNG 3469



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  +   V
Sbjct: 3283 GSIFIIESLDYESSHEYYLTVEATDGGTPSLSDVATVSINVTDINDNTPVFSQDTFV--V 3340

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       + A+D D  +N+
Sbjct: 3341 SEDAVLEQSVIT-------VMADDADGPSNS 3364



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L+VT  ++    KA   ++ + +LD NDN P F Q +Y   V
Sbjct: 768 GMLKILSPLDRETTDKYTLNVTVYDLGVPQKAAWHLLDIRVLDANDNAPEFLQESYFVEV 827

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 828 SEDKELSSEIIQ-------VEATDKD 846



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2855 AINMETGWITTLKELDHEKRDSYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2914

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2915 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2942



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A   V+V +LD NDN P F    Y   
Sbjct: 3173 GIIQLEKPLDRELQAVYTLTLKAVDQGLPRRLTATSVVVVSVLDINDNPPVFEYREYGAT 3232

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3233 VSEDILIGTEVLQ-------VYAASRDIEANA 3257



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1403 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1455

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1456 -----EVVIPEDTVPETEILQISAVDKD-EKNKLI 1484



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++  + + A +  G  A C+V V + D NDN P F    Y    
Sbjct: 2540 GQIFTSEKLDRETPAEKVIAVRLMAKDAGGRVAFCTVNVILTDDNDNAPQFRATKY---- 2595

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                 IGA     TS+  V+ A D D  +NA
Sbjct: 2596 --EVNIGASAAKGTSVVKVL-ASDTDEGSNA 2623



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE  + + +SV A +         VI  V + D NDN P F Q  Y   +
Sbjct: 2334 GLISLVRTLDYEQFQQHRISVRAVDGGMPPLSSDVIITVDVTDLNDNPPLFDQQIYEARI 2393

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2394 SEHAPHGHFV-------TCVKACDADS 2413



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1184 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPRSTIARVIVKILDENDNKPQFLQ 1243

Query: 71   LNY 73
              Y
Sbjct: 1244 KFY 1246



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K +L+   G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ 
Sbjct: 406 KFSLNHNTGLISILEPIKRQQASHFELEVTTSDR---KASTRVLVKVLGTNSNPPEFTQT 462

Query: 72  NYTGYVSEAAPIGALVLT 89
            Y     E  PIG  V++
Sbjct: 463 AYKASFDENVPIGTTVMS 480



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 11/101 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFT 69
            A+ P  G +     LDYE T  ++ +V   +M      A+   +V +H++D ND  P F+
Sbjct: 1815 AIDPSTGAVRAVLRLDYEETSTFHFTVQVHDMGVPRLFAEYAANVTIHVIDINDCPPVFS 1874

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +  Y   +      G  VLT       + A D DS T++ L
Sbjct: 1875 RSLYEASLLLPTYKGVRVLT-------VNATDADSNTSSQL 1908



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY  
Sbjct: 871 GVVKIARPLDREVQHVHYLKIEARDQAKEEPQLFSTVLLKVSLEDVNDNPPMFIPPNYRV 930

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 931 KVREDLPEGTIIM 943


>gi|66346693|ref|NP_005236.2| protocadherin Fat 1 precursor [Homo sapiens]
 gi|334302792|sp|Q14517.2|FAT1_HUMAN RecName: Full=Protocadherin Fat 1; AltName: Full=Cadherin family
            member 7; AltName: Full=Cadherin-related tumor suppressor
            homolog; AltName: Full=Protein fat homolog; Contains:
            RecName: Full=Protocadherin Fat 1, nuclear form; Flags:
            Precursor
          Length = 4588

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1807



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAVTLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P F Q  Y   
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYEAR 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3039 GKLIMQ-------ISATDADIRSNA 3056



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPQGGVI-------AILSTTDADSE 2948



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVVK-------VLASDADEGSNA 2629



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 37.7 bits (86), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V VH++D ND  P F +
Sbjct: 1863 ANVTVHVIDINDCPPVFAK 1881



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDARRDGEIRYSIRDGS 1077



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E    ++L + A + A  +    +   V V + D NDN P F   NY  
Sbjct: 875 GVVNIARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTVIM 947


>gi|1107687|emb|CAA60685.1| homologue of Drosophila Fat protein [Homo sapiens]
          Length = 4590

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1715 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1775 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1810



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2237 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAVTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2297 EASVIGTSVVQ-------VRATDSDSEPN 2318



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA    +L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVSPAHLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 3181 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 3240

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3241 VSEDILVGTEVLQ-------VYAASRDIEANA 3265



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3287 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3346

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3347 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3380



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2760 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2819

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2820 IVENLPGGSRVIQ-------IRASDADSGTNG 2844



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S++V + D NDN P F+  
Sbjct: 3071 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVVTLEDVNDNAPEFSAD 3130

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3131 PYAITVFENTEPGTLL 3146



 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3387 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3446

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3447 YSVIIQENKPVGFSVLQ-----LVVTDED 3470



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2983 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3040

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3041 GKLIMQ-------ISATDADIRSNA 3058



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2863 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2922

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2923 EIYKGTVSEDDPQGGVI-------AILSTTDADSE 2950



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2549 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2608

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+ +        A D D  +NA
Sbjct: 2609 GSSAAKGTSVVKS--------ASDADEGSNA 2631



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D N N P F Q  Y   
Sbjct: 2343 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPTLSSDVIVTVDVTDLNGNPPLFEQQIYEAR 2401

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2402 ISEHAPHGHFV-------TCVKAYDADS 2422



 Score = 37.7 bits (86), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1806 SNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1865

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V VH++D ND  P F +
Sbjct: 1866 ANVTVHVIDINDCPPVFAK 1884



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  +++
Sbjct: 475 NVPIGTTIMS 484



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E    ++L + A + A  +    +   V V + D NDN P F   NY  
Sbjct: 875 GVVNIARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTVIM 947


>gi|426346210|ref|XP_004040777.1| PREDICTED: protocadherin Fat 1 [Gorilla gorilla gorilla]
          Length = 4495

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1807



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T   LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSGKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V SV +++ D NDNTP F+Q  YT  +
Sbjct: 3192 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVASVNINVTDINDNTPVFSQDTYTTVI 3251

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3252 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3285



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE +R + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 2399

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2400 SEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   + LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3292 IDPVRGEVKVTRLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3351

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3352 YSVIIQENKPVGFSVLQ-----LVVTDED 3375



 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3039 GKLIMQ-------ISATDADIRSNA 3056



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H+  +D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVTVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVIIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V VH++D ND  P F +
Sbjct: 1863 ANVTVHVIDINDCPPVFAK 1881



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077


>gi|301623207|ref|XP_002940911.1| PREDICTED: protocadherin Fat 1-like isoform 1 [Xenopus (Silurana)
            tropicalis]
          Length = 4590

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LD+E    + L+V ATNMAG     ++ VH+ D NDN P F Q NY 
Sbjct: 1713 INPNSGVVTTQKQLDFETLPSFTLTVQATNMAGLSTNSTLTVHVRDENDNFPVFAQTNYR 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+AP  ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1773 GLISESAPPNSVVLTDDNIPLVIRATDSDQESNALL 1808



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y L V AT+ + GA A   V + + D NDN P F +  Y   +S
Sbjct: 2235 GVINVFAPLDFESHPAYKLRVRATDSLTGAHAEVFVDIILEDVNDNPPVFREKTYAATLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        I A+D DS  N
Sbjct: 2295 EASVIGTSVVQ-------INAKDPDSGQN 2316



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  G L T + LD+E  + + L+V     ++   +    +++++ D ND+ P
Sbjct: 1502 SLKKFRMDPATGSLYTTEKLDHETMQQHILTVMVRDQDVPVLRNFARIVINVTDTNDHAP 1561

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT   Y G V E+A +G+ VL  ++L       DKD   NA
Sbjct: 1562 WFTSSFYEGRVYESAAVGSAVLQVSAL-------DKDKGKNA 1596



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI---LDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L+V AT+    + + SV   +   LD NDN P F    Y   
Sbjct: 3180 GIISLEKPLDRELQAVYTLTVKATDQGLPRKLSSVASVVVSVLDINDNPPVFEHREYGSS 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++E AP+G  VL        + A  +D E NA
Sbjct: 3240 LTEDAPVGTEVLQ-------VYATSRDIEVNA 3264



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KPLD E    Y L++TAT+   A KAV  V V +LD NDNTP   + +Y   +SE A  
Sbjct: 2982 RKPLDREVKDNYLLNITATDGTFATKAV--VEVKVLDANDNTPVCEKTSYAETISEDALA 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G ++L        + A D D  +NA
Sbjct: 3040 GRVILQ-------VAASDADIRSNA 3057



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            G L  +K LD+E+T+ Y   V A N+ G  + + SV V IL  D NDN P F    Y  +
Sbjct: 2759 GRLKLEKQLDHESTKWYQFYVLAHNLHGEHEIISSVDVSILVKDVNDNAPVFDSNPYKAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        +RA D D  +N 
Sbjct: 2819 IVENLPEGTKVVQ-------VRAFDLDVGSNG 2843



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G++     LDYE +  Y L+V AT+        V SV +++ D NDN+P F+
Sbjct: 3278 KFTINPVTGMIFIIASLDYETSPEYYLTVEATDGGTPPLSDVASVNINVTDVNDNSPVFS 3337

Query: 70   QLNYTGYVSEAAPIGALVL 88
            Q  YT  V E +  G  VL
Sbjct: 3338 QNTYTTVVGEDSVSGQSVL 3356



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G +   + LD+E  ++YNL+  A +        + C + V ++D N+N  TP F++    
Sbjct: 982  GAVRIIQELDFEEKQVYNLTARAKDRGKPVSLSSACYINVELIDVNENLHTPLFSEFVSK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G + E  PIG  V+T       + A D+D+  +     ++ DGS
Sbjct: 1042 GSIREDVPIGTPVMT-------VSAHDEDTGRDGEIRYSIRDGS 1078



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +++P  G++ T  P+  +      L +  ++    KA   V++ +L  N NTP FTQ +Y
Sbjct: 413 SINPNTGLISTLSPVKAKILSHIELDIITSD---KKAFTKVLIKVLGTNINTPEFTQTSY 469

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V E +PIG+ V +       + A D D   N  +
Sbjct: 470 KAVVDENSPIGSSVFS-------VHAVDHDEGENGFI 499



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  G L T  PLD E   +Y+L V AT+  G     +V + + D NDN P F+   YT
Sbjct: 3073 LNPFTGELKTSLPLDREILEVYHLMVKATDGGGRFCQAAVELTLEDVNDNAPEFSADPYT 3132

Query: 75   GYVSE 79
              V E
Sbjct: 3133 VTVYE 3137



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 7    LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL-- 59
             F IL P     + P  GVL T   P D E   ++ L V  ++      V  V+V +   
Sbjct: 2014 FFHILNPDPRFKISPTSGVLSTTGIPFDREEEDLFELVVEVSDEQKPPTVAHVLVQVTVE 2073

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            D NDN P F  L Y   V   AP G L+
Sbjct: 2074 DVNDNNPVFVNLPYYAMVQIDAPEGHLI 2101



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++ T KPLDYE  +   L V AT+         + VHI   D NDN P F Q  Y   +
Sbjct: 2341 GLIETAKPLDYEYFQECTLVVRATDNGIPPLSNDISVHIGLTDLNDNPPAFIQQVYEVKI 2400

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE +  G  V         ++A D DS     L+ S
Sbjct: 2401 SELSKPGHFV-------TCVKATDADSSDTEKLEYS 2429



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            A++P  G++ T  + LD E    + L VT T+       AV  VIV +LD NDN P F Q
Sbjct: 1189 AINPKTGLITTTSRKLDREQQSEHILEVTITDNGHPAKSAVTRVIVKVLDENDNKPQFLQ 1248

Query: 71   LNY 73
              Y
Sbjct: 1249 KFY 1251



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  +PLD E    YNL+V AT+  G ++V + V + ++D ND+ P F+   Y   + 
Sbjct: 1410 GTIIVARPLDAEQKSNYNLTVEATD--GTRSVSTQVSIKVIDTNDHRPEFSTSKYEVLIP 1467

Query: 79   E 79
            E
Sbjct: 1468 E 1468



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L++ A +      +   +V + + D NDN P F++ N
Sbjct: 3386 IDPVRGEVKVNKLLDRELISGYTLTIQAEDNGQPPRRNTTTVNIDVSDVNDNPPMFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  +L        +   DKDS  N 
Sbjct: 3446 YSIVIQENKPVGFSILH-------LAVTDKDSSHNG 3474



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LF++ +       G + T   LD+E T  Y++ V A +  G K + S   + V ++D N
Sbjct: 2860 ELFSVDRET-----GWVTTLGELDHEKTNKYHIVVVAYDH-GDKVLSSSSTIEVTVMDVN 2913

Query: 63   DNTPYFTQLNYTGYVSEAAP 82
            DN P FT   Y G VSE  P
Sbjct: 2914 DNPPRFTAEIYKGTVSEDDP 2933



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T +  D E    ++  +SV A +  G    C V V + D NDN P F    Y   +
Sbjct: 2547 GQLFTAERFDREIPTNKVIPVSVMAKDTGGKVGFCIVNVILTDSNDNVPQFRATEYKVSI 2606

Query: 78   SEAAPIGALVLTNTSLPLV-IRAEDKDSETNA 108
            +   P G         P+V + A D D   NA
Sbjct: 2607 ASDVPRGT--------PIVKVIASDSDEGANA 2630



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T K LD      Y L V AT+  +     + S+ + +   N+  P FT+  
Sbjct: 1613 IDPVLGIIKTAKELDRNNHGRYELVVKATDHGIPPLSQITSIHIFVTISNNAAPKFTKKE 1672

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE A +G+ V
Sbjct: 1673 YSSEISETAHVGSFV 1687



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G L    PLD E    YNL++T  ++    K+   ++ V++LD NDN P F Q +Y+ ++
Sbjct: 773 GWLKILSPLDRELKDQYNLNITVYDLGIPQKSSWRLLDVNVLDVNDNPPEFLQESYSVHL 832

Query: 78  SE 79
            E
Sbjct: 833 KE 834



 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LDYE   RIY L + A++       +    V + + + NDN P F ++N  G
Sbjct: 518 GVITTLEDLDYELMPRIYTLKIRASDWGLPYRRETEIPVTITLNNLNDNIPLFEKVNCEG 577

Query: 76  YVSEAAPIGALVLT 89
            V +   +G  + T
Sbjct: 578 TVPKDLGVGEQITT 591


>gi|301623209|ref|XP_002940912.1| PREDICTED: protocadherin Fat 1-like isoform 2 [Xenopus (Silurana)
            tropicalis]
          Length = 4570

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LD+E    + L+V ATNMAG     ++ VH+ D NDN P F Q NY 
Sbjct: 1681 INPNSGVVTTQKQLDFETLPSFTLTVQATNMAGLSTNSTLTVHVRDENDNFPVFAQTNYR 1740

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+AP  ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1741 GLISESAPPNSVVLTDDNIPLVIRATDSDQESNALL 1776



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y L V AT+ + GA A   V + + D NDN P F +  Y   +S
Sbjct: 2203 GVINVFAPLDFESHPAYKLRVRATDSLTGAHAEVFVDIILEDVNDNPPVFREKTYAATLS 2262

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        I A+D DS  N
Sbjct: 2263 EASVIGTSVVQ-------INAKDPDSGQN 2284



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  G L T + LD+E  + + L+V     ++   +    +++++ D ND+ P
Sbjct: 1470 SLKKFRMDPATGSLYTTEKLDHETMQQHILTVMVRDQDVPVLRNFARIVINVTDTNDHAP 1529

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +FT   Y G V E+A +G+ VL  ++L       DKD   NA
Sbjct: 1530 WFTSSFYEGRVYESAAVGSAVLQVSAL-------DKDKGKNA 1564



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI---LDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L+V AT+    + + SV   +   LD NDN P F    Y   
Sbjct: 3148 GIISLEKPLDRELQAVYTLTVKATDQGLPRKLSSVASVVVSVLDINDNPPVFEHREYGSS 3207

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++E AP+G  VL        + A  +D E NA
Sbjct: 3208 LTEDAPVGTEVLQ-------VYATSRDIEVNA 3232



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KPLD E    Y L++TAT+   A KAV  V V +LD NDNTP   + +Y   +SE A  
Sbjct: 2950 RKPLDREVKDNYLLNITATDGTFATKAV--VEVKVLDANDNTPVCEKTSYAETISEDALA 3007

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G ++L        + A D D  +NA
Sbjct: 3008 GRVILQ-------VAASDADIRSNA 3025



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            G L  +K LD+E+T+ Y   V A N+ G  + + SV V IL  D NDN P F    Y  +
Sbjct: 2727 GRLKLEKQLDHESTKWYQFYVLAHNLHGEHEIISSVDVSILVKDVNDNAPVFDSNPYKAF 2786

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        +RA D D  +N 
Sbjct: 2787 IVENLPEGTKVVQ-------VRAFDLDVGSNG 2811



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G++     LDYE +  Y L+V AT+        V SV +++ D NDN+P F+
Sbjct: 3246 KFTINPVTGMIFIIASLDYETSPEYYLTVEATDGGTPPLSDVASVNINVTDVNDNSPVFS 3305

Query: 70   QLNYTGYVSEAAPIGALVL 88
            Q  YT  V E +  G  VL
Sbjct: 3306 QNTYTTVVGEDSVSGQSVL 3324



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G +   + LD+E  ++YNL+  A +        + C + V ++D N+N  TP F++    
Sbjct: 950  GAVRIIQELDFEEKQVYNLTARAKDRGKPVSLSSACYINVELIDVNENLHTPLFSEFVSK 1009

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G + E  PIG  V+T       + A D+D+  +     ++ DGS
Sbjct: 1010 GSIREDVPIGTPVMT-------VSAHDEDTGRDGEIRYSIRDGS 1046



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +++P  G++ T  P+  +      L +  ++    KA   V++ +L  N NTP FTQ +Y
Sbjct: 381 SINPNTGLISTLSPVKAKILSHIELDIITSD---KKAFTKVLIKVLGTNINTPEFTQTSY 437

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V E +PIG+ V +       + A D D   N  +
Sbjct: 438 KAVVDENSPIGSSVFS-------VHAVDHDEGENGFI 467



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  G L T  PLD E   +Y+L V AT+  G     +V + + D NDN P F+   YT
Sbjct: 3041 LNPFTGELKTSLPLDREILEVYHLMVKATDGGGRFCQAAVELTLEDVNDNAPEFSADPYT 3100

Query: 75   GYVSE 79
              V E
Sbjct: 3101 VTVYE 3105



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 7    LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL-- 59
             F IL P     + P  GVL T   P D E   ++ L V  ++      V  V+V +   
Sbjct: 1982 FFHILNPDPRFKISPTSGVLSTTGIPFDREEEDLFELVVEVSDEQKPPTVAHVLVQVTVE 2041

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            D NDN P F  L Y   V   AP G L+
Sbjct: 2042 DVNDNNPVFVNLPYYAMVQIDAPEGHLI 2069



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++ T KPLDYE  +   L V AT+         + VHI   D NDN P F Q  Y   +
Sbjct: 2309 GLIETAKPLDYEYFQECTLVVRATDNGIPPLSNDISVHIGLTDLNDNPPAFIQQVYEVKI 2368

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE +  G  V         ++A D DS     L+ S
Sbjct: 2369 SELSKPGHFV-------TCVKATDADSSDTEKLEYS 2397



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            A++P  G++ T  + LD E    + L VT T+       AV  VIV +LD NDN P F Q
Sbjct: 1157 AINPKTGLITTTSRKLDREQQSEHILEVTITDNGHPAKSAVTRVIVKVLDENDNKPQFLQ 1216

Query: 71   LNY 73
              Y
Sbjct: 1217 KFY 1219



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  +PLD E    YNL+V AT+  G ++V + V + ++D ND+ P F+   Y   + 
Sbjct: 1378 GTIIVARPLDAEQKSNYNLTVEATD--GTRSVSTQVSIKVIDTNDHRPEFSTSKYEVLIP 1435

Query: 79   E 79
            E
Sbjct: 1436 E 1436



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L++ A +      +   +V + + D NDN P F++ N
Sbjct: 3354 IDPVRGEVKVNKLLDRELISGYTLTIQAEDNGQPPRRNTTTVNIDVSDVNDNPPMFSKGN 3413

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  +L        +   DKDS  N 
Sbjct: 3414 YSIVIQENKPVGFSILH-------LAVTDKDSSHNG 3442



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LF++ +       G + T   LD+E T  Y++ V A +  G K + S   + V ++D N
Sbjct: 2828 ELFSVDRET-----GWVTTLGELDHEKTNKYHIVVVAYDH-GDKVLSSSSTIEVTVMDVN 2881

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALV 87
            DN P FT   Y G VSE  P   ++
Sbjct: 2882 DNPPRFTAEIYKGTVSEDDPPDGVI 2906



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T +  D E    ++  +SV A +  G    C V V + D NDN P F    Y   +
Sbjct: 2515 GQLFTAERFDREIPTNKVIPVSVMAKDTGGKVGFCIVNVILTDSNDNVPQFRATEYKVSI 2574

Query: 78   SEAAPIGALVLTNTSLPLV-IRAEDKDSETNA 108
            +   P G         P+V + A D D   NA
Sbjct: 2575 ASDVPRGT--------PIVKVIASDSDEGANA 2598



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T K LD      Y L V AT+  +     + S+ + +   N+  P FT+  
Sbjct: 1581 IDPVLGIIKTAKELDRNNHGRYELVVKATDHGIPPLSQITSIHIFVTISNNAAPKFTKKE 1640

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE A +G+ V
Sbjct: 1641 YSSEISETAHVGSFV 1655



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G L    PLD E    YNL++T  ++    K+   ++ V++LD NDN P F Q +Y+ ++
Sbjct: 741 GWLKILSPLDRELKDQYNLNITVYDLGIPQKSSWRLLDVNVLDVNDNPPEFLQESYSVHL 800

Query: 78  SE 79
            E
Sbjct: 801 KE 802



 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LDYE   RIY L + A++       +    V + + + NDN P F ++N  G
Sbjct: 486 GVITTLEDLDYELMPRIYTLKIRASDWGLPYRRETEIPVTITLNNLNDNIPLFEKVNCEG 545

Query: 76  YVSEAAPIGALVLT 89
            V +   +G  + T
Sbjct: 546 TVPKDLGVGEQITT 559


>gi|194226506|ref|XP_001916261.1| PREDICTED: protocadherin Fat 1 [Equus caballus]
          Length = 4588

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN+P F Q  YT
Sbjct: 1712 INPHSGSIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNSPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT  ++PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTAENVPLVIRAVDGDKESNALL 1807



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G+L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGLLYTSEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFVQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        ++A D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VKATDSDSEPN 2315



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTAVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +YNL V AT+  G      +++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTLVPLDREEQAVYNLLVKATDGGGRFCQAHIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3129 PYTITVFENTEPGTLL 3144



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A    + +   A   V + + D NDN+P      Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTHDDSEVVASVDVSIQVKDANDNSPVVESNPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDLDSGTNG 2842



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPISLSSTCYVEVEVIDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  PIG+ V       + + A D+D+  +     ++ DGS
Sbjct: 1041 GVVKEDVPIGSSV-------MAVSAHDEDTGRDGEIRYSIRDGS 1077



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +AP G  V+        + A D D  +NA
Sbjct: 2606 GSSAPKGTSVIK-------VLASDADEGSNA 2629



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRN 62
            P+  FAI    +   + V + KKPLD E    Y L++TAT+    +KA+  V V +LD N
Sbjct: 2963 PLGQFAIEN--IQSEWKVYV-KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDAN 3017

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            DN+P   +  Y+  + E A  G L+L        + A D D  +NA
Sbjct: 3018 DNSPICEKTLYSDTIPEDAFPGKLILQ-------VSATDADIRSNA 3056



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 AIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L+++ +++    KA   ++ + +LD NDN P F Q  Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNISVSDLGIPQKAAWHLLDIRVLDANDNPPEFLQERYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 832 SEDKEINSEIIQ-------VEATDKD 850



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++  
Sbjct: 3385 IDPARGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSKRI 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3445 YSIIIQENKPVGFSVLQ-----LVVT--DKDSSHNG 3473



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISALDKD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI---LDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    + +  V   +   LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDREVQAVYTLTLKAVDHGLPRRLTGVGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3239 VSEDILIGTEVLQ-------VYAASRDIEANA 3263



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 15/93 (16%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVS 78
            V  T  P D E    +++ V  T      AV  V+V ++  D+NDN P F  L       
Sbjct: 2032 VSTTGVPFDREQQEAFDVVVEVTQERKPSAVAHVVVKVIIEDQNDNAPVFVNL------- 2084

Query: 79   EAAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
               P  A+V  +T +  VIR   A D+DS  N 
Sbjct: 2085 ---PYYAVVKVDTVVGHVIRYVTAVDRDSGRNG 2114



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSIHKYFAIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V +H++D ND  P F++  Y
Sbjct: 1863 ANVTIHVIDINDCPPVFSKSLY 1884



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T   LD E+T  Y L+V AT+       +   V + + D NDN P  ++  Y   V
Sbjct: 1089 GVIETSDRLDRESTSHYWLTVYATDQGVVPLSSFIEVYIEVEDVNDNAPQTSEPVYYPEV 1148

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P    V+        I+A D DS +N  L
Sbjct: 1149 MENSPKDVSVVQ-------IQAFDPDSSSNDKL 1174



 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V ++  N N P FT+  Y     E
Sbjct: 418 GLISILEPIKRQQAAHFELEVTTSDR---KASTRVLVKVVSANTNPPEFTETAYKASFDE 474

Query: 80  AAPIGALVLT 89
             P+G  V++
Sbjct: 475 NVPVGTTVMS 484



 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY  
Sbjct: 875 GVVKIVDPLDRELQHVHYLKIEARDQASEEPQLLSTVLLKVSLEDVNDNPPKFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTIIM 947



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE  + + + V A + +G   + S   V V + D NDN P F Q  Y   
Sbjct: 2340 GLISLVRTLDYEQFQQHKIFVRAVD-SGMPPLSSDVIVTVDVTDLNDNPPLFDQQIYEAK 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE A  G  V         ++A D DS
Sbjct: 2399 ISEHATHGHFV-------TCVKAYDADS 2419


>gi|410956059|ref|XP_003984662.1| PREDICTED: protocadherin Fat 1 [Felis catus]
          Length = 4586

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 65/96 (67%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     SV+VH+ D NDN P F Q  YT
Sbjct: 1710 INPHSGSIVTQKALDFETLPIYTLIIQGTNMAGLSTNTSVLVHLQDENDNLPVFMQAEYT 1769

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A   ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1770 GLISESASTNSVVLTDKNVPLVIRATDADKESNALL 1805



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LSV AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2232 GVINVIAPLDFESHPAYKLSVRATDSLTGAHAEVFVDIIVEDINDNPPVFGQQSYAATLS 2291

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EAA IG  V+        +RA D DSE N
Sbjct: 2292 EAAVIGTSVVQ-------VRATDSDSEPN 2313



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D ND+ 
Sbjct: 1498 LSLKKFRLDPATGSLYTSETLDHEAIHQHVLTVMVRDQDVPVKRNFARIIVNVSDTNDHA 1557

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1558 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1593



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN+P F+Q  YT  +
Sbjct: 3283 GAIFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVSINVTDVNDNSPVFSQDTYTAVI 3342

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A +   V+T       + A+D D  +N+
Sbjct: 3343 SEDAVLEQSVIT-------VMADDADGPSNS 3366



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+L  +KPLD E   +Y L++ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3177 GILQLEKPLDREVRAVYTLTLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3236

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3237 VSEDILLGTEVLQ-------VYAASRDIEANA 3261



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +YNL V AT+  G     S+++ + D NDN P F+  
Sbjct: 3067 KFKLNPDTGELKTLAPLDREEQAVYNLLVKATDGGGRFCQASIVLTLEDVNDNAPEFS-- 3124

Query: 72   NYTGYVSEAAPIGALVLTNT---SLPLVIRAEDKDSETN 107
                    A P    V  NT   +L   ++A D D+  N
Sbjct: 3125 --------ADPHAITVFENTEPGTLLTRVQATDADAGLN 3155



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N   P F+     
Sbjct: 979  GAVRIVQHLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLHPPVFSSFVEK 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  PIG+ V+T       + A D+D+  +     ++ DGS
Sbjct: 1039 GVVKEDVPIGSSVMT-------VSAHDEDTGRDGEIRYSIRDGS 1075



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++TA+++    KA   ++ + +LD NDN P F Q +Y   V
Sbjct: 770 GMLKILSPLDRETTDKYTLNITASDLGIPQKAAWRLVDIRVLDANDNPPEFLQESYFVEV 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 830 SEDKEVDSEIIQ-------VEATDKD 848



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2544 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATKYEVDI 2603

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +AP G  V+        + A D D  +NA
Sbjct: 2604 GSSAPKGTSVIK-------VLASDADEGSNA 2627



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K +L+P  G++   +P+  +    + L VT ++    +A   V+V +L  N N P FTQ 
Sbjct: 408 KFSLNPNTGLISILEPVKRQQASHFELEVTTSDR---RASTRVLVKVLGANSNPPEFTQT 464

Query: 72  NYTGYVSEAAPIGALVLT 89
            Y     E  PIG  VL+
Sbjct: 465 AYKASFDENVPIGTTVLS 482



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            +  KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E 
Sbjct: 2976 VFVKKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKSLYSETIPED 3033

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G L++        + A D D  +NA
Sbjct: 3034 AFPGKLIMQ-------VSATDADIRSNA 3054



 Score = 41.2 bits (95), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V +   V + + D NDN+P      Y  +
Sbjct: 2756 GRLKLEKSLDHETTKWYQFSILARCAHEDYEVVASVDVSIQVKDANDNSPVLESNPYEAF 2815

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+         RA D DS TN 
Sbjct: 2816 IVENLPGGSRVIQ-------ARASDLDSGTNG 2840



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   + LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3383 IDPARGEVKVTRLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSKGN 3442

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   D+DS  N 
Sbjct: 3443 YSVIIQENKPVGFSVLQ-----LVVT--DRDSSHNG 3471



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1186 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1245

Query: 71   LNY 73
              Y
Sbjct: 1246 KFY 1248



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2859 AINMETGWITTLKELDHEERDHYQIKVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2918

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2919 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2946



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1407 GTIVVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1459

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1460 -----EVVIPEDTVPETEILQISAVDKD-EKNKLI 1488



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            GVL T   P D E    +++ V  T      AV  VIV   I D+NDN P F  L     
Sbjct: 2028 GVLSTTGIPFDREQQEAFDVVVEVTQEHKPSAVAHVIVKVSIEDQNDNAPVFVNL----- 2082

Query: 77   VSEAAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
                 P  A+V  +T +  VIR   A D+DS  N 
Sbjct: 2083 -----PYYAVVKVDTVVGHVIRHVTAVDRDSGRNG 2112



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T K LD  +   Y+L V AT+        + SV V +   ++ +P FT   
Sbjct: 1610 IDPILGLIKTAKELDRNSQVEYDLMVKATDKGNPPMSEITSVHVFVTIADNASPKFTSKE 1669

Query: 73   YTGYVSEAAPIGALV 87
            Y+  +SE   IG+ V
Sbjct: 1670 YSVEISETVGIGSFV 1684



 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY  
Sbjct: 873 GVVKIVSPLDREVQHVHYLKIEARDQAREEPQLLSTVLLKVSLEDVNDNPPRFIPPNYRV 932

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 933 KVREDLPEGTIIM 945


>gi|348566837|ref|XP_003469208.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1-like [Cavia
            porcellus]
          Length = 4579

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 66/96 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +++VH+ D NDN P F Q  Y+
Sbjct: 1713 INPHSGTVITQKALDFETLPIYTLIIQGTNMAGLSTNTTMLVHLQDENDNVPVFMQAEYS 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D E+NALL
Sbjct: 1773 GLISESASINSVVLTDRNVPLVIRATDADKESNALL 1808



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y+  +S
Sbjct: 2235 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFVQQSYSATLS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2295 EASVIGTSVVQ-------VRATDSDSEPN 2316



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    +IV++ D ND+ 
Sbjct: 1501 LSLKKFRLDPATGSLSTCEKLDHEAVHQHILTVMVRDQDVPVKRNFARIIVNVSDTNDHA 1560

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1561 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1596



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 39/76 (51%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +YNL V AT+  G     S+++ + D NDN P FT  
Sbjct: 3070 KFRLNPDTGELKTLAPLDREEQAVYNLLVKATDGGGRFCQASIVLTLEDVNDNAPEFTAD 3129

Query: 72   NYTGYVSEAAPIGALV 87
             YT  V E    G L+
Sbjct: 3130 PYTITVFENTEPGTLL 3145



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 3180 GIIQLEKPLDREQQAVYTLTLKAVDQGLPRRLSATGTVIVSVLDINDNPPVFEYREYGAT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3240 VSEDVLIGTEVLQ-------LYAASRDIEANA 3264



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +   + LDYE+   Y L+V AT+  G  ++  V+   +++ D NDNTP F+Q  YT  
Sbjct: 3286 GAIFIIENLDYESAHEYYLTVEATD-GGTPSLSDVVTVNINVTDINDNTPAFSQDTYTAV 3344

Query: 77   VSEAAPIGALVLT 89
            +SE A +   V+T
Sbjct: 3345 ISEDAVLEQSVIT 3357



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V++ ++D ND+ P F+   Y   + E
Sbjct: 1410 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVLIKVIDTNDHRPQFSTSKYEVVIPE 1468

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L IRA DKD E N L+
Sbjct: 1469 DTAPETEI--------LQIRAVDKD-EKNKLI 1491



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2982 KKPLDREKKDSYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDALP 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3040 GKLIMQ-------VSATDADIRSNA 3057



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V +   V + + D NDN+P      Y  +
Sbjct: 2759 GRLKLEKSLDHETTKWYQFSILARCTQDDYEVVASVDVSIQVKDANDNSPVLESNPYEAF 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS  N 
Sbjct: 2819 IVENLPGGSRVIQ-------IRASDLDSGLNG 2843



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L++ A++      V +  V+I   D NDN P F++ N
Sbjct: 3386 IDPVKGEVKVTKLLDRETISGYTLTIQASDNGSPPRVNTTTVNIDVSDVNDNAPLFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   DKDS  N 
Sbjct: 3446 YSVIIQENKPVGFSVLQ-----LVVT--DKDSSHNG 3474



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    KA   ++ + ILD NDN P F Q +Y   V
Sbjct: 773 GMLKILSPLDRETTDKYTLNMTVYDLGIPQKAAWRLLDIVILDANDNPPEFLQESYFVEV 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   I + ++        + A DKD  +N 
Sbjct: 833 SEDKEINSEIIQ-------VEATDKDLGSNG 856



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1189 SIHPKTGLITTTSRRLDREQQDEHILEVTVTDNGTPPKSTIARVIVKILDENDNKPQFLQ 1248

Query: 71   LNY 73
              Y
Sbjct: 1249 KFY 1251



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2547 GQIFTLEKLDRETPAEKVISIRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATKYEVNI 2606

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  G  V+        + A D D  +NA
Sbjct: 2607 GSNAAKGTSVIK-------VFASDADEGSNA 2630



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 10/82 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T +++ +V   +M      A+  
Sbjct: 1804 SNALLVYHIVEPSVHKYFAIDSSTGAIHTVLSLDYEETSVFHFTVQVHDMGTPRLFAEYA 1863

Query: 52   CSVIVHILDRNDNTPYFTQLNY 73
             +V +H++D ND  P F++  Y
Sbjct: 1864 ANVTIHVIDINDCPPVFSKSLY 1885



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K +++P  G++   +P+  +    +   VT  +    KA   V+V +L  N N P FTQ 
Sbjct: 411 KFSINPNTGLISILEPIKRQQVSHFEFEVTTGDR---KASTKVLVKVLSANSNPPEFTQT 467

Query: 72  NYTGYVSEAAPIGALVL 88
            Y     E A IG  VL
Sbjct: 468 AYRASFDENALIGTTVL 484



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D     +TP F+     
Sbjct: 982  GAVRIVQQLDFERKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHTPVFSSFVEK 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E  PIG+ V+T ++     R ED  +D E   ++ DGS
Sbjct: 1042 GIVKEDVPIGSSVMTVSA-----RDEDTGRDGEIRYSIRDGS 1078



 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E   ++ L + A + A  +    +   + V + D NDN P F   NY  
Sbjct: 876 GVVKVVHPLDREVQHVHYLKIEARDQAKEELQLFSTVLLKVSLEDVNDNPPKFIPPNYRV 935

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 936 KVREDLPEGTIIM 948


>gi|260828414|ref|XP_002609158.1| hypothetical protein BRAFLDRAFT_131370 [Branchiostoma floridae]
 gi|229294513|gb|EEN65168.1| hypothetical protein BRAFLDRAFT_131370 [Branchiostoma floridae]
          Length = 2847

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 64/96 (66%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+  KK LDYE    YNL+V ATNM    +  +V+VHI D NDN P F+Q  Y 
Sbjct: 171 VNPNSGVITCKKQLDYERQTSYNLTVQATNMVSLSSTATVLVHIADENDNPPVFSQSEYI 230

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAA IG++VL   ++PLVI A D D+E N+LL
Sbjct: 231 GSISEAATIGSVVLDVNNIPLVIAATDADNELNSLL 266



 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 64/96 (66%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+  KK LDYE    YNL+V ATNM    +  +V+VHI D NDN P F+Q  Y 
Sbjct: 446 VNPNSGVITCKKQLDYERQTSYNLTVQATNMVSLSSTATVLVHIADENDNPPVFSQSEYI 505

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAA IG++VL   ++PLVI A D D+E N+LL
Sbjct: 506 GSISEAATIGSVVLDVNNIPLVIAATDADNELNSLL 541



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E    ++ +V  ++  M    +   VIV +LD NDN P F Q +Y   +
Sbjct: 1076 GLILTARNLDHEKIEKHDFTVRVSDGGMPSLSSEVHVIVTVLDLNDNAPQFDQPSYDCMI 1135

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE AP G  V         + A D DS  N  L
Sbjct: 1136 SELAPRGHFVTK-------VSASDADSTDNNRL 1161



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L    GVL+T  PLD E T +Y L VTA +  G      + ++++D NDN P F +  Y 
Sbjct: 1810 LDKDTGVLMTGAPLDREETPVYTLGVTAKDGGGKSCYTELTINLIDVNDNPPKFEKQQYL 1869

Query: 75   GYVSEAAPIGALV 87
              V E   +  L+
Sbjct: 1870 VPVYENTAVNTLL 1882



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD EA   +NL++ AT+    +  +   +I+ +LD NDN P F    Y   V
Sbjct: 1917 GIVSLAKALDREAQASFNLTIRATDEGAPRRSSTSYLIISVLDINDNPPEFEFAEYAKNV 1976

Query: 78   SEAAPIGALVL 88
            SE+ PIG+ ++
Sbjct: 1977 SESTPIGSQII 1987



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 9/105 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRND 63
            QL+A L   L    G +     LDYEA++ Y L+V A++  M     + +V +++ D ND
Sbjct: 2096 QLYADLLLILVHSTGKITIVNTLDYEASQGYYLTVKASDGGMPTLSDITTVSINVTDVND 2155

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P F+   Y+  +SE A  G  V+        + A D+DS  NA
Sbjct: 2156 NAPEFSMPMYSASISEDAHTGDSVIQ-------VMATDRDSPPNA 2193



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE  + + L+V AT+  +G  A   V + + D ND  P F + +Y   +S
Sbjct: 970  GVINVVGSLDYETKQNFRLTVRATDSRSGVDAEVVVDITVQDINDVAPVFEKPSYEATLS 1029

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EAA IG  V+        + A D DS  N L+
Sbjct: 1030 EAAAIGTTVIK-------VSATDLDSGVNQLM 1054



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 14/105 (13%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
            QLF I         G + +K  LD E    R+  + V A++  G  + C+V V + D+ND
Sbjct: 1274 QLFEI-----DADTGQIYSKMALDREDENQRMIIVPVVASDQGGRVSFCNVTVTLTDKND 1328

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NTP F   +Y   +   A  GA V+        + A D+D  TN+
Sbjct: 1329 NTPQFELASYQANIPTDAEEGAEVIQ-------VNAIDQDIGTNS 1366



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +    PLD E  ++Y L++TAT+ A   A+ +V + + D NDN+P   Q  YT  +SE
Sbjct: 1714 GKVYVNGPLDRETKQLYVLNITATDGA-FTAMATVNIDVQDVNDNSPICEQSRYTASISE 1772



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 28   LDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEA++ Y L+V A++  M     + +V +++ D NDN P F+   Y+  +SE A  G 
Sbjct: 2030 LDYEASQGYYLTVKASDGGMPTLSDITTVSINVTDVNDNAPEFSMPMYSASISEDAHTGD 2089

Query: 86   LVLTNTSL 93
             V+    L
Sbjct: 2090 SVIQQKQL 2097



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC-SVIVHIL--DRNDNTPYFTQLNYTGY 76
            G + T  PLD E    Y   VTAT+    K +  + +VH+   D ND+ P F    Y G 
Sbjct: 1608 GWVTTLVPLDREMMSSYAFGVTATDKGEPKQLKDTTLVHVTVADVNDSPPTFRSSTYQGQ 1667

Query: 77   VSEAAPIGALVLT 89
            V E A  G +V+T
Sbjct: 1668 VREDALPGTIVIT 1680



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+   K LD E T  Y+L V A  ++     A   V + + D NDN P F    Y   +
Sbjct: 1499 GVIYVNKELDTETTAWYSLKVQAETLSSPPLLAFADVSIQVKDANDNKPKFDSKPYKITL 1558

Query: 78   SEAAPIGALVL 88
             E A +G  V+
Sbjct: 1559 PENASVGTSVI 1569



 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 15/115 (13%)

Query: 1   MSHPVQLFAILKP----ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGAKAVCSVI 55
           ++ P++ + IL P     + P  GVL T   P D E    Y + +   +      V  V+
Sbjct: 742 LNEPLE-YKILNPNNMFEVSPTSGVLRTLGIPFDREEKEKYEIVIEVRDKRSTPRVAHVV 800

Query: 56  VH--ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V   I D NDN P F  L Y   V   A  G  V T       + A DKD+  N+
Sbjct: 801 VFVTIADINDNAPVFVNLPYYSVVQVDAEPGTPVRT-------VTAVDKDAGKNS 848


>gi|403285083|ref|XP_003933869.1| PREDICTED: protocadherin Fat 1 [Saimiri boliviensis boliviensis]
          Length = 4589

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 67/96 (69%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T++ LD+E   IY L +  TNMAG  A  +V+VH+ D NDN+P F Q  YT
Sbjct: 1712 INPHSGSIITQRALDFETLPIYTLIIQGTNMAGLSANTTVVVHLQDENDNSPVFVQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A + ++VLT+ ++PLVI A D D ++NALL
Sbjct: 1772 GLISESASVNSVVLTDRNVPLVIGAADADKDSNALL 1807



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVVSVVAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V + D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVDVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A IG++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAIGSVVLQVTAL-------DKDKGKNA 1595



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVSINVTDINDNTPVFSQDTYTAVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D   N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPLNSHIHYSIIDGN 3378



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSAPLDREEQAVYHLLVRATDGGGRFCEASIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ +  S+ A        + S   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWHQFSILARCTEEDYEMVSSVEVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS  N 
Sbjct: 2818 IVENLPAGSRVIQ-------IRASDVDSGANG 2842



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE +R + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2340 GLISLLRTLDYERSRQHTILVRAVDGGMPPLSSEVIVTVDVTDLNDNLPLFEQQIYEARI 2399

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2400 SEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGDVKVTKVLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPAFSRGN 3444

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  + E  P+G  VL
Sbjct: 3445 YSVIIQENKPVGFSVL 3460



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPYGV------LLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++PA+H  + +      + T + LDYE T I+  +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPAMHSYFAIDSSTAAIHTVRSLDYEETSIFQFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V +H++D ND  P F +
Sbjct: 1863 ANVTIHVIDINDCPPVFAR 1881



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATRYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  G  V+        + A D D  +NA
Sbjct: 2606 GSGAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDTLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  +IV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARIIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A D+D E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISATDQD-EKNKLI 1490



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAQFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI---LDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    + + +    +   LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDHGLPRRLTTTGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    KA   ++ V ++D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLDVVVIDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D     + P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVKAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A+D+D+  +     ++ DGS
Sbjct: 1041 GAVKEGAPVGSLVMT-------VAAQDEDAGRDGEIRYSIRDGS 1077



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR---NDNTPYFTQ 70
            A+H   G + T K LD+E    Y + V A++      + S     +     ND+ P FT 
Sbjct: 2861 AVHTETGWITTLKELDHEKRGNYQIKVVASDHGEKIQLSSTTTVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G +V        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVV-------AILSTTDDDSE 2948


>gi|443716925|gb|ELU08218.1| hypothetical protein CAPTEDRAFT_222745 [Capitella teleta]
          Length = 4539

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 66/99 (66%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  ++P  GV+ ++  LDYE    +NL++ ATNMA A +   V+VH++D NDN P F   
Sbjct: 1683 KFGINPSSGVIYSRDELDYEQNEFFNLTIKATNMARAWSSTLVLVHVVDENDNAPVFVMH 1742

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y+G VSEA+P G++VL   + PLVI+A D D+ +NALL
Sbjct: 1743 AYSGNVSEASPEGSVVLDADNTPLVIKASDMDTNSNALL 1781



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++ P  G +L  K LD+E    YN++V  T+M    A  +V++ +LD ND+ P F+Q  Y
Sbjct: 1377 SIDPENGNVLLAKALDWETRNEYNITVRITDMV-FTAHTTVLIQVLDINDHAPQFSQSEY 1435

Query: 74   TGYVSEAAPIGALVLT 89
            +  VSE+ P G  +LT
Sbjct: 1436 SVGVSESTPAGVDILT 1451



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-AGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G +     LDYE    Y L+V AT++  G+ A  +V +++ D ND+ P FT   YT  VS
Sbjct: 2217 GSITIADKLDYELITSYQLTVRATDIDTGSFAEAAVHINLQDENDHPPRFTSNAYTVTVS 2276

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E   IG  ++T T+        D+DS  NAL
Sbjct: 2277 EVVAIGTPIITVTTT-------DRDSGVNAL 2300



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G + TK+ LD+E   R+Y+L V A++       ++   + V + D+NDN P F + + +G
Sbjct: 485 GEIKTKQVLDFETMRRVYSLVVRASDWGSPFRRESESILKVRLQDQNDNKPQFEKEDCSG 544

Query: 76  YVSEAAPIGALVL 88
           Y+S  AP+G  +L
Sbjct: 545 YLSREAPVGTELL 557



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++  K  LD E    Y L+VTA +  G      V + + D NDN P FTQ  YT  +SE
Sbjct: 3055 GIISIKNSLDRETAPDYTLTVTAVDGGGLFCQSEVYIVVTDVNDNAPVFTQTEYTVGISE 3114

Query: 80   AAPIGALVL 88
             A    L++
Sbjct: 3115 HAQKNTLLM 3123



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G+L  +KPLDYE  R Y+L+V AT+       A  ++ +++ D ND  P F Q 
Sbjct: 3258 SMDPESGILRHQKPLDYETVREYSLTVLATDGGEPPLTASATLNINVTDCNDQAPIFDQS 3317

Query: 72   NYTGYVSEAAPIGALVL 88
             Y   + E   +G  +L
Sbjct: 3318 VYRLTIPENTRVGQSIL 3334



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            AL    G + T   LD EA   Y  SVTA++       +V  V + + D NDN P F Q 
Sbjct: 2842 ALDAESGQISTLVSLDREARDTYEFSVTASDRGSPPLSSVTLVKISVTDFNDNPPQFEQD 2901

Query: 72   NYTGYVSEAAPIGALVLTNTS 92
             Y G V+E A  G ++L  TS
Sbjct: 2902 EYEGAVNEDALPGTIILMVTS 2922



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++     LD EA   YN+SV A +    +  +   +IV++LD NDN P F +  Y   +
Sbjct: 3156 GIVSLNGELDREAVAQYNISVYAYDQGTVRLSSAAHLIVNVLDENDNPPEFERSVYLESI 3215

Query: 78   SEAAPIGA--LVLTNTSLPLVIRAED--KDSETNALLD 111
             E A +G+  L +T TSL   I A+     SE NALL+
Sbjct: 3216 PEDAAVGSSLLQVTATSLDTGINAQMTYTISEDNALLN 3253



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
           + P  GV+   + LD E    Y L V A++ A  K + S +   + + D NDN P F   
Sbjct: 844 ISPDSGVIKVNQQLDRETIPWYELQVVASDGALEKPLSSTVLVSISLADINDNPPQFFPE 903

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAE 100
           +Y+  + E  P+G ++LT T+  L + A+
Sbjct: 904 SYSIRIREDLPVGVVILTLTANDLDLGAD 932



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   K LD E    Y L++ A++ A   +   V V ILD NDN P   Q +Y   +SE
Sbjct: 2952 GELYVNKQLDRERKFWYELTLVASDGAHVTST-QVFVSILDANDNAPVCEQASYQKIISE 3010

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
                G+ +L   S         ++S    LLDG+
Sbjct: 3011 DVDTGSFLL-RVSASDADEKGTRNSRIKFLLDGN 3043



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            ++ P GV+   +PLD E+   Y+L + AT+          ++ +++ D ND  P FT  N
Sbjct: 3364 VNAPDGVISVAQPLDRESLSHYSLVILATDTGATVLTGTATLFINLTDVNDCPPRFTMDN 3423

Query: 73   YTGYVSEAAPIGALVL 88
            +T  V E  P+   +L
Sbjct: 3424 FTAVVQEDLPLATSIL 3439



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP 66
            +I K  ++   GV+ T++ LD EA   + L V   +      +++  V++ + D ND+ P
Sbjct: 1475 SIDKFKINSETGVITTRERLDREAASHHQLVVMVRDQGTPSKRSLARVVIVVNDHNDHHP 1534

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             F      G V  +A IG  VLT       + A D+D   NA L
Sbjct: 1535 EFVTSEVEGRVYGSAEIGTQVLT-------VLAVDRDHGHNAQL 1571



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNT--PYFTQLNYTG 75
            G +    PLD+E+ ++YN+   A + +       CS+ + I+D N+N   P F    + G
Sbjct: 954  GTIRIVNPLDFESKQLYNIIARARDRSTPALSTKCSISIEIVDVNENLYPPVFKDFVFQG 1013

Query: 76   YVSEAAP----IGALVLTNTSL---PLVIRAEDK 102
             V E  P    +  LV T+      PL  RA+ +
Sbjct: 1014 RVKENQPPNTSVMRLVATDADTLQNPLASRADSQ 1047



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + T + LD E    + + V AT+  G     +VIV++ D+ D+ P F    Y   V  
Sbjct: 2531 GEIFTLEALDREKHPQHLVPVAATDGGGRMGYVTVIVNVADQGDSEPQFKLQEYKANVFA 2590

Query: 80   AAPIGALVL 88
             A IG+++L
Sbjct: 2591 DAEIGSVIL 2599



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G L  ++ LD E    Y L++T  +M   AKA  +++ V ++D NDN P F ++ Y   +
Sbjct: 746 GRLQLQRALDRELRDSYTLNITVWDMGQPAKASYTLLDVRVIDVNDNAPQFQKMIYNVTI 805

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E   +   +++       ++A D D  TNA
Sbjct: 806 PENIDVNRTIVS-------VKAYDDDEGTNA 829



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L TK  LD+E   +Y  SV   +       A     V VH++D ND+ P F++  Y+
Sbjct: 1801 GSLKTKVTLDHEVAAVYEFSVQVQDSGVPSQSAMTAAQVTVHVMDINDSPPQFSEPEYS 1859



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            +G +     LD E      L++ A        V    V V I+D NDN P F   +Y   
Sbjct: 2740 FGKIEVYDALDREVVDSVRLTIRAETETSPALVAETVVTVKIMDINDNPPVFESQHYAVT 2799

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E A IG+ VL        + A D D+  N+ L
Sbjct: 2800 IMENAEIGSQVLR-------VEAHDADTGANSDL 2826


>gi|345781801|ref|XP_532835.3| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1 [Canis lupus
            familiaris]
          Length = 4589

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 64/96 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   +Y L +  TNMAG     +V+VH+ D NDN P F Q  Y 
Sbjct: 1712 INPHSGSIITQKALDFETLPVYTLIIQGTNMAGLSTNTTVLVHLQDENDNLPVFMQSEYV 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ + PLVIRA D D E+NALL
Sbjct: 1772 GLISESASINSVVLTDKNAPLVIRATDADKESNALL 1807



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E+   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFESHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFVQQSYATTLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVIQ-------VRATDSDSEPN 2315



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EAT  + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLSTSETLDHEATHQHVLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTSSSYEGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDN+P F+Q  YT  +
Sbjct: 3286 GAIFIIETLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNSPVFSQDTYTAVI 3345

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +   V+T       + A+D D  +N+ +
Sbjct: 3346 SEDALLEQSVIT-------VMADDTDGPSNSRI 3371



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +        + C V V ++D N+N  +P F+     
Sbjct: 981  GAVRIVQHLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVIDVNENLHSPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E  P+G+ V+T ++     R ED  +D E   ++ DGS
Sbjct: 1041 GVVKEDVPVGSSVMTVSA-----RDEDTGRDGEIRYSIRDGS 1077



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +YNL V AT+  G     ++++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTLAPLDREEQEVYNLLVKATDGGGRFCEANIVLTVEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSE 79
             YT  V E
Sbjct: 3129 PYTITVFE 3136



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y L++ A +    +   A  +++V +LD NDN P F    Y   
Sbjct: 3180 GIIQLEKPLDRELQAVYTLTLKAVDQGLPRRLTATGTLVVSVLDINDNPPVFEYREYGAT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   IG  VL        + A  +D E NA
Sbjct: 3240 VSEDILIGTEVLQ-------VYAASRDIEANA 3264



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A       + V SV V I   D NDN+P      Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTHEDYEVVASVDVSIQVKDANDNSPVLESNPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPAGSRVIQ-------IRASDLDSGTNG 2842



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T +++    KA   +I + +LD NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVSDLGIPQKAAWRLIDIRVLDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   I + ++        + A DKD
Sbjct: 832 SEDKEINSEIIQ-------VEATDKD 850



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3386 IDPAKGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSKGN 3445

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      L++   DKDS  N 
Sbjct: 3446 YSVIIQENKPVGFSVLQ-----LIVT--DKDSSHNG 3474



 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C++ V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISIRLMAKDAGGKVAFCTINVILTDDNDNAPQFRATKYEVDI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP G  V+        + A D D  +NA
Sbjct: 2606 GSNAPKGTSVIK-------VLASDADEGSNA 2629



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPICEKTLYSDTIPEDAFP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIQVIDTNDHRPQFSASKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A DKD E N L+
Sbjct: 1462 -----EVVIPEDTIPETEILQISAVDKD-EKNKLI 1490



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWISTLKELDHEKRDRYQIQVVASDHGEKVQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    +A   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQASHFELEVTTSDR---RASTRVLVKVLSANSNPPEFTQTAYKASFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTAVMS 484



 Score = 34.3 bits (77), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E  +++ L + A + A  +    +   + V + D NDN P F   NY  
Sbjct: 875 GVVKIVYPLDREVQQVHYLKIEARDQAREEPQLLSTVLLKVSLEDVNDNPPKFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +++
Sbjct: 935 KVREDLPEGTIIM 947


>gi|327269193|ref|XP_003219379.1| PREDICTED: protocadherin Fat 3-like [Anolis carolinensis]
          Length = 4553

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 66/97 (68%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  GV+ ++KPLDYE    Y L+V ATNMAG  +  +V + I+D NDN P F  L Y
Sbjct: 1711 AINPYSGVITSQKPLDYELMSSYQLTVQATNMAGMASNATVNIQIVDENDNPPIFLFLKY 1770

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1771 SGRISEAAPVNSIVRSLENNPLVIRAIDADSNQNALL 1807



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   I+ L+V A++ + GA+A  +V + I D NDN P F    Y   +S
Sbjct: 2234 GVLSVISPLDYEVNPIFKLTVRASDALTGARAEVTVDLIINDMNDNAPVFEHFAYNATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E + IG  VL        + A D DSE N ++
Sbjct: 2294 EGSLIGTPVLQ-------VIATDADSENNKII 2318



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1501 SMRKFRIDPNTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDSNDHSP 1560

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A IG+ VL  T+L       DKD   NA L
Sbjct: 1561 YFTSPLYEASVFESAAIGSAVLQVTAL-------DKDKGENAEL 1597



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G++  KK LD E    Y+L + A  + +    A  +V V I D NDN+P FT  
Sbjct: 3386 SIDPSLGLIKVKKRLDRERISGYSLVIQARDSGIPSLSASVTVNVDISDVNDNSPVFTPA 3445

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NYT  + E  PIG  +L      LV+   DKDS  N 
Sbjct: 3446 NYTAVIQENKPIGTSILQ-----LVVT--DKDSLHNG 3475



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2340 GLILTARLLDHELMQQCILKVRATDNGFPPLSSEVLVSIFVTDMNDNPPIFNQLIYESYV 2399

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2400 SELAPRGHFV-------TCVQASDADS 2419



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN++V  T+     A   V++ +LD NDN P F+Q +Y   +SE
Sbjct: 1409 GTIVIAKPLDAEQRSVYNMTVEVTDGTNV-ASTQVLIKVLDNNDNGPEFSQPSYDVTISE 1467

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   +L +T + L + A D+D +
Sbjct: 1468 D------ILPDTEI-LQVEAIDRDEK 1486



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T  PL       Y+L V   +         V V I D ND+ P FTQ +Y+ YV+E
Sbjct: 423 GLITTAHPLKIVDKEFYDLEVVNKD---GDLKTHVTVRIEDANDHIPEFTQPSYSSYVNE 479

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + P+G  +L+       + A DKD   N  +
Sbjct: 480 SVPVGTTILS-------VSAFDKDRGENGYI 503



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T  PLD E   +YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3074 LDPESGELKTLAPLDREKIPVYNLIARATD--GGGRFCQSEIHLILEDVNDNPPMFSSDH 3131

Query: 73   YTGYVSEAAPIGALV 87
            YT  V E     AL+
Sbjct: 3132 YTACVYENTATKALL 3146



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE  + + L + A +       AV +V +++ D NDN P F+Q  Y+  +
Sbjct: 3287 GSIYVIEHLDYETCKDFFLIIEAKDGGSPALSAVTTVNINVTDVNDNAPRFSQEVYSAVI 3346

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +G  ++T       + AED DS  N  +
Sbjct: 3347 SEDASVGDSLIT-------LIAEDLDSPPNGQI 3372



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 8    FAILKPA----LHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILD 60
            ++IL P     +    GV+ T   P D E   +Y L V A+       V  V+V  HI D
Sbjct: 2013 YSILNPGNKFKIKSTLGVIETTGIPFDREEQELYELVVEASREQDHLRVARVVVKVHIED 2072

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F  L Y   V   A  GAL+   T++       DKD   N 
Sbjct: 2073 INDNSPVFVGLPYYAAVQVEADPGALIYRVTAI-------DKDKGANG 2113



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ + PLD E    YN+++ A++    + + S   V + +LD NDN P F + +Y   
Sbjct: 3181 GIIILEHPLDRELQPSYNVTIKASDQGIVQTLSSFATVTITVLDINDNPPVFERRDYLVT 3240

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E     A +L+       + A  KD  TNA
Sbjct: 3241 VPEDTSPSAEILS-------VFATSKDIGTNA 3265



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T +Y L++T  ++    KA   ++ + + D NDN P F Q +Y+  +
Sbjct: 777 GLLKVLLPLDREKTELYLLNITIYDLGTPQKATWRLLTITVEDANDNRPEFLQESYSVNI 836

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+  IG  ++        + A D+D  +N 
Sbjct: 837 FESTSIGVEIIQ-------VEARDRDLGSNG 860



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD+E    ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2759 GLIKLDKRLDHETNSAFHFKVAATIQLDKVDVVLTVDVDIKVLDINDNKPVFESASYEAI 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  ++        ++A D D   N 
Sbjct: 2819 IMEGMPIGTKLVQ-------VKATDADWGANG 2843



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T + LD E     ++++   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2546 GQIITTEKLDREIPLEGDITIFLRALDGGGRTTFCTVRVIVVDENDNAPQFMTVEYRASV 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  G LV         ++A D D   NA +
Sbjct: 2606 KADVGKGHLVTQ-------VQAVDPDDGANARI 2631



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N  TPYF+     
Sbjct: 986  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLYTPYFSDFAVI 1045

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E A IG  VL  T+     R +D  +D E   ++ DGS
Sbjct: 1046 GSVKENARIGTSVLQVTA-----RDDDNGRDGEIQYSVRDGS 1082



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TAT+ +   +    VIV   D NDN P   Q+ Y     E  P 
Sbjct: 2983 KRPLDREEQDVYLLNITATDGLFVTQTAVEVIV--TDVNDNNPVCDQVTYIAIFPEDIPP 3040

Query: 84   GALVL 88
              ++L
Sbjct: 3041 NKVIL 3045



 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++ +V ++++    ++ S   + V + D NDN P F    Y G 
Sbjct: 2869 GWISTLKDLDHERNPTFSFTVVSSDLGETLSLSSTTLISVTVTDINDNAPVFEHDMYRGT 2928

Query: 77   VSEAAPIGALV 87
            V E+   G +V
Sbjct: 2929 VKESDSPGEVV 2939


>gi|395504920|ref|XP_003756794.1| PREDICTED: protocadherin Fat 2 [Sarcophilus harrisii]
          Length = 4252

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 64/91 (70%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA A   V+V+I+D NDNTP F   ++ GY+SE
Sbjct: 1606 GLISTQKSLDHEKVSSYQLKIRGSNMAGAFADVMVLVYIIDENDNTPVFINSSFVGYISE 1665

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAPI +++L   + PLV+RA D D++TNALL
Sbjct: 1666 AAPIHSMILDEYNHPLVVRATDADTDTNALL 1696



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
            +HP  G L   K LD+E T  Y L++ AT+ +G  A+     V V + D NDN P F QL
Sbjct: 3268 IHPKKGELQIAKHLDWEETSSYFLTLRATD-SGQPALYQDVEVDVQVADVNDNPPRFFQL 3326

Query: 72   NYTGYVSEAAPIGALVL 88
            NY+  V E AP+G+ VL
Sbjct: 3327 NYSIVVQENAPLGSRVL 3343



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P FTQL YT  VS
Sbjct: 2119 GVLTVTGPLDYESQTKHIFTVRATDTALGSFSEATVEVQVEDINDNPPIFTQLVYTALVS 2178

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A DKDS  N
Sbjct: 2179 EGLPAQTPVIK-------LLASDKDSGRN 2200



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +KP+DYE T+ Y + V A       G   + SV + + D NDN P F    Y  +
Sbjct: 2643 GALKVRKPIDYETTKWYQIDVMANCSHKETGLITLASVNIQVKDVNDNKPVFEADPYKAF 2702

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++E  P+G  V+        + A D+D+  N 
Sbjct: 2703 LTENMPVGTTVIQ-------VTANDQDTGVNG 2727



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNT--P 66
             L P  G L  ++ LD+E    YNLS+ A++  G K     A C V V +LD N+N   P
Sbjct: 969  GLDPLTGALSLERELDFEKRTWYNLSLWASD--GGKPIARGASCHVQVTVLDVNENLHPP 1026

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTS 92
             F    Y G V E +  G LVL+ T+
Sbjct: 1027 RFASFVYQGQVEENSLPGTLVLSVTA 1052



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD+EAT  Y L+VT  ++   +  +   + V++ D NDNTP F    Y   +
Sbjct: 766 GLLKVAAPLDHEATSFYILNVTVYDLGTPQKSSWKQLAVNVGDENDNTPKFPAGGYQVEI 825

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E   +G  +         ++AED D + N 
Sbjct: 826 REDTEMGTTIAQ-------LKAEDADKDDNG 849



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + +++ V A +  +    A   VIV++ D NDN P F Q  Y   V
Sbjct: 2225 GEMSTAQELDYETQQQFHVKVRAVDNGIPPLSAEALVIVNVSDVNDNPPAFRQPQYEANV 2284

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G LV+   +L
Sbjct: 2285 SELASCGHLVIKVQAL 2300



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            TKK LD E    Y L VTA++    +A   V V +LD NDN+P  TQ+ Y+  V E    
Sbjct: 2865 TKKILDREHIAKYLLKVTASD-GKFQASIPVEVFVLDINDNSPQCTQILYSSKVPEDMLP 2923

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G  +L        + A D D+  NA
Sbjct: 2924 GHFILQ-------VTATDLDAGVNA 2941



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T + +DY     Y L V  T +     +  V++ I+D N++ P F+Q +Y G   E
Sbjct: 412 GLITTTRLMDYHDRARYQLHV-GTTLGQTSTI--VVIDIIDCNNHAPVFSQSSYHGTFDE 468

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G  VLT       + A D+D   N  +
Sbjct: 469 NLPPGTSVLT-------VTATDQDHGENGFV 492



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PL+ E   +Y+L   AT+  G       I+ + D NDN P F    + 
Sbjct: 2957 LDPYTGELTTLMPLNREEKDVYHLVAKATDGGGRSCQADAIIRVEDVNDNAPRF----FP 3012

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S A      V  NT++     V+ A D D   NA
Sbjct: 3013 NHCSVA------VFDNTTVKTPVAVVFARDPDEGVNA 3043



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 8   FAILKPALHP----PY-GVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I  P + P    PY GV+ T K +DYE   R+Y   V AT+       ++  S+ + +
Sbjct: 494 YSITSPRIVPFTIDPYLGVISTSKLMDYELMQRLYTFRVWATDWGSPFRRESEVSISLML 553

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            + NDN P F   N  G V     +G  V+T +++ +
Sbjct: 554 NNLNDNQPMFENANCNGTVPWDLRVGETVVTLSAIDM 590



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T++ LD E    Y   V A++      + S   V V I D NDN P F  
Sbjct: 2746 AINSENGWITTRQELDCEIQETYRFYVVASDHGRTIQLSSQALVEVTITDENDNAPQFAS 2805

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
              Y G V E    G  V+T  +L   I  +++
Sbjct: 2806 DVYKGSVIENGDPGEHVVTLRTLDADISEQNR 2837



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + ++D NDN P  ++  Y   V
Sbjct: 1083 GMIQTIMPLDREFIPHYWLTVLAVDQGSVPLSSVTEVYIEVMDTNDNPPQMSRPVYYPSV 1142

Query: 78   SEAAPIGALVL 88
             E AP+   VL
Sbjct: 1143 KEDAPMNTSVL 1153



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           L+ E    Y L + AT    G +A   V+VHILD+ND  P F+  +Y   + E  P+ + 
Sbjct: 106 LNREVCDSYTLVIQATEQTLGYEASTQVLVHILDQNDLKPLFSPPSYKVAIPEDTPLKSA 165

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
           +        ++ A D D   NA
Sbjct: 166 I-------CMVSATDADLGQNA 180



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E  + Y LS+     +         V+V+I D ND+ P F Q  Y+  V
Sbjct: 3168 GILYVNGSLDFETGQEYYLSIECIRKSSPSLNDGTIVVVNITDVNDHPPKFLQDLYSVEV 3227

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G  +LT       + A D D   N+ +
Sbjct: 3228 KEDAAVGESILT-------VSATDGDGPLNSAI 3253



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    +   + V A +  G  A CSV   + D NDN P F   +YT  V
Sbjct: 2431 GQITTLQKLDRENATEKFMPIKVMARDGGGKVAFCSVKTILTDENDNPPQFKASDYTVSV 2490

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  G+ V+        + A D D   NA
Sbjct: 2491 QSNVSKGSPVIQ-------VLAYDADEGANA 2514



 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 29/65 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKP DY+A   Y L V A +           V ++ RN + P F  L+Y 
Sbjct: 2014 IDPYLGDISLKKPFDYQALNKYTLRVIARDGGNPSLQAEENVLVIVRNKSNPLFQSLHYK 2073

Query: 75   GYVSE 79
              + E
Sbjct: 2074 VQIPE 2078


>gi|441620238|ref|XP_004088652.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1 [Nomascus
            leucogenys]
          Length = 4585

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 65/96 (67%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN  +F Q  YT
Sbjct: 1709 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNCQFFMQAEYT 1768

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G + E+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1769 GLIVESASINSVVLTDRNVPLVIRATDADKDSNALL 1804



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2231 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2290

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2291 EASVIGTSVVQ-------VRATDSDSEPN 2312



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1497 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1556

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1557 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1592



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A        V +   V + + D NDN+P F    Y  +
Sbjct: 2755 GRLKLEKSLDHETTKWYQFSILARCTQDDHEVVASVDVSIQVKDANDNSPVFESSPYEAF 2814

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN+
Sbjct: 2815 IVENLPGGSRVIQ-------IRASDADSGTNS 2839



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V +++ D NDNTP F+Q  YT  +
Sbjct: 3282 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNTPVFSQDTYTAVI 3341

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3342 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3375



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3176 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3235

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3236 VSEDILVGTEVLQ-------VYAASRDIEANA 3260



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     SV++ + D ND+ P F+  
Sbjct: 3066 KFKLNPDTGELRTSTPLDREEQAVYHLLVRATDGGGRFCQASVVLTLEDVNDSAPEFSAD 3125

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3126 PYAITVFENTEPGTLL 3141



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3382 IDPIRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3441

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3442 YSVIIQENKPVGFSVLQ-----LVVTDED 3465



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE +R + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2337 GLISLLRTLDYEQSRQHTIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 2396

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2397 SEHAPHGHFV-------TCVKAYDADS 2416



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2978 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3035

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3036 GKLIMQ-------ISATDADIRSNA 3053



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDSGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2543 GQIFTLEKLDRETPAEKVISVRLMAKDDGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2602

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2603 GSSAAKGTSVIK-------VLASDADEGSNA 2626



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2858 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIHLSSTAIVDVTVTDVNDSPPRFTA 2917

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2918 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2945



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+  
Sbjct: 1800 SNALLVYHIVEPSVHKYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1859

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V VH++D ND  P F +
Sbjct: 1860 ANVTVHVIDINDCPPVFAK 1878



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    K    V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KVSTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E  PIG+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDVPIGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077


>gi|348518842|ref|XP_003446940.1| PREDICTED: protocadherin Fat 3-like [Oreochromis niloticus]
          Length = 4724

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 62/91 (68%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+KPLD+E T  Y L V A +MAG +A  SVI+ ++D ND+ P F Q+ Y G VSE
Sbjct: 1697 GVITTRKPLDFEQTTSYFLVVRALSMAGVEASTSVIIQVVDVNDSPPVFQQIRYVGVVSE 1756

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAPI ++VL     PLVI+A DKD   NALL
Sbjct: 1757 AAPINSVVLAEDGNPLVIQATDKDRNHNALL 1787



 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G++    PLDYE T+ Y L+V AT+ + GAK+   V + +LD NDN P F   +Y+  +S
Sbjct: 2224 GIIRVIYPLDYETTQYYRLTVKATDTLTGAKSEVDVDIVMLDVNDNPPLFQNTSYSAVLS 2283

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E + IG  VL        + A+D+D+E NA++
Sbjct: 2284 ENSMIGTPVLQ-------VFAQDQDTEKNAVV 2308



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   KPLDYE   I+   V AT   ++  + +   + V ILD NDN P F    Y   
Sbjct: 2749 GLIRLVKPLDYEEVSIFRFKVAATTRRDLIESVSTVDLEVKILDVNDNKPLFETSTYVAT 2808

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P+G  V+        +RA D D  +N 
Sbjct: 2809 VMEGMPVGTRVVQ-------VRALDPDWGSNG 2833



 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L+  KPLD E   +YN++V  T+     A   V + I D NDN P F+   Y   VSE
Sbjct: 1389 GTLVVAKPLDAEVQSVYNMTVQVTDGTNF-ATAQVFIRIQDSNDNPPVFSLPAYDISVSE 1447

Query: 80   AAPIGALVLTNTSLPLVIRAEDKD 103
              P+   +L        +RA D D
Sbjct: 1448 DIPVDMELLR-------VRASDID 1464



 Score = 45.8 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 36/60 (60%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           L+ E    Y L+V A+   G +A+ +V + +LD ND  P F+  +Y   VSE+AP+GA +
Sbjct: 97  LNREVQDNYTLTVKASAPGGLEALTTVYIRVLDTNDLRPLFSPTSYAFVVSESAPLGASI 156



 Score = 44.3 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFT 69
            ++ P  GV++ +K LD E+   Y + V AT+ AG +   S    + + +LD NDN P F 
Sbjct: 3179 SIDPVTGVVVLEKSLDRESRDSYRVRVQATDRAGQQGALSSQVDLTILVLDVNDNAPVFQ 3238

Query: 70   QLNYTGYVSEAAPIGALVL 88
            + +Y   V E   +G  V+
Sbjct: 3239 RRDYAVTVPEDVAVGTEVV 3257



 Score = 43.5 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  GV+ T   LDYEA    I  + V        + +  ++V + D NDN PYFT   
Sbjct: 1487 VNPGTGVVYTADRLDYEARTQHILTIMVKDQEFPFNRDLARILVAVEDSNDNIPYFTSTV 1546

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y     E   +G  V+  T+L       DKD+  N  L
Sbjct: 1547 YDATAYETFSVGTSVVQVTAL-------DKDNGLNGQL 1577



 Score = 42.0 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 12/105 (11%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHI 58
            S PV   ++   A+    G + T   +D+EA   Y+  V A+++A    + S   V + +
Sbjct: 2857 SGPVSTTSVF--AIDSKTGWITTVSQMDHEACSSYSFEVVASDLAELLPLSSTTVVTITV 2914

Query: 59   LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             D NDN P F +  Y G + E+ P+G +V        +++ +D+D
Sbjct: 2915 SDVNDNPPLFERELYRGAIKESDPLGEVV-------AILKTKDRD 2952



 Score = 40.8 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            +G +     LD+E  + Y L++ A +           V + ++D NDN P F+Q  Y   
Sbjct: 3291 WGSISVADDLDFEVCKDYYLTIEAWDNGNPPLSTATMVTIELMDVNDNAPAFSQDIYNLL 3350

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
            VSE A +G  V         + AED DS+ N     ++L G  N
Sbjct: 3351 VSEDASVGQTVTR-------VVAEDLDSQVNGRITYSILKGDRN 3387



 Score = 40.0 bits (92), Expect = 0.18,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 15/96 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           G++   +PLD E    Y L++T  +     M+G + +  +I    D NDN P F Q +Y+
Sbjct: 758 GLITILRPLDRERVDRYFLNITIYDQGIPQMSGWRLLTVIIE---DTNDNDPQFYQDSYS 814

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             VSE + IG  V+T       I A D+D   N  L
Sbjct: 815 ALVSENSAIGMEVIT-------ITAFDRDMGQNGQL 843



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR---NDNTPYFTQLNYTGY 76
            G++ T + LDYE  + +N  V AT+ +G  A+ S +   +     NDN P F+Q+ Y  +
Sbjct: 2330 GLIYTARLLDYELIQRHNFIVRATD-SGDPALSSDVTVSVTVTDTNDNPPNFSQMLYEAF 2388

Query: 77   VSEAAPIGALV 87
            VSE AP G  V
Sbjct: 2389 VSELAPKGHFV 2399



 Score = 38.9 bits (89), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 11/101 (10%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDN--TPYFTQLN 72
            P  GVL  +K LD+E  + +NL++ A +  +   ++   V + ++D ++N   PYF+   
Sbjct: 964  PISGVLRIRKELDFEKQQFFNLTLLAEDRGIPSLRSQTFVELEVVDVSENLYAPYFSDFA 1023

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
              G V E +  G  VLT       + A+D D   + +L  S
Sbjct: 1024 VRGSVKENSRAGTSVLT-------VNAKDDDKGRDGVLKYS 1057



 Score = 38.5 bits (88), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T + LD E    R   L+V A +  G  + C+V V + D NDN P F  + Y   +
Sbjct: 2536 GVISTVQKLDRENPFNRDMVLTVMALDGGGRASFCTVRVVLADENDNAPRFRAVEYRMSI 2595

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  G+LV         I+A D D+ +N 
Sbjct: 2596 KANVAKGSLVTQ-------IQATDPDAGSNG 2619



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G+L   K LD E    Y+LSV A + +G+ A+ S +   + I D NDN P F   
Sbjct: 3392 IDPVAGLLKVNKKLDRELVSRYSLSVQAFD-SGSPAMSSTVTINIDISDVNDNPPVFNPP 3450

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N T  +      G  +L        +   DKDS  N 
Sbjct: 3451 NSTVVIQLNQAAGTTLLQ-------LSVSDKDSPKNG 3480



 Score = 36.2 bits (82), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T   +D E    Y L   AT+  G      + + +LD NDN P F+  +Y   V E
Sbjct: 3083 GELRTAIVMDRELAPSYKLIAQATDGGGLFCRSDIFLKVLDVNDNAPLFSSTHYLASVYE 3142

Query: 80   AAPIGALV 87
             A   AL+
Sbjct: 3143 NASPKALL 3150



 Score = 34.7 bits (78), Expect = 8.1,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 15/115 (13%)

Query: 1    MSHPVQLFAILKP----ALHPPYG-VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI 55
            ++ P++ + +L P    ++ P  G V  T  P D E    Y L V  +       V  VI
Sbjct: 1997 LNEPLK-YTLLNPVGRFSIRPTCGAVFTTGVPFDREEKDSYELVVEVSREDEILRVARVI 2055

Query: 56   VHIL--DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V +   D NDN+P F  L Y   V   A  G+ V         + A DKD   N 
Sbjct: 2056 VQVQVEDVNDNSPQFVNLPYYAVVQVEAQPGSSVFR-------VSATDKDYSRNG 2103


>gi|380790103|gb|AFE66927.1| protocadherin Fat 1 precursor [Macaca mulatta]
          Length = 4588

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 65/96 (67%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   +Y L +  TNMAG     +V V + D NDN+P F Q  YT
Sbjct: 1712 INPHSGSIITQKALDFETLPVYTLIIQGTNMAGLSTNTTVSVQLQDENDNSPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1807



 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNAPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A      +   A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHEITKWYQFSILARCTQDDREMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN+
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNS 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L++ AT+        V +V V++ D NDN P F+Q  YT  V
Sbjct: 3285 GAVFIIENLDYESSHEYYLTIEATDGGTPSLSDVATVNVNVTDVNDNAPVFSQDTYTAVV 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VLADDADGPSNSHIHYSIIDGN 3378



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3069 KFQLNPDTGELKTSAPLDREEQAVYHLLVRATDRGGRFCQASIVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             Y   V E    G L+         ++A D DS  N
Sbjct: 3129 PYAITVFENTEPGTLLTR-------VQATDADSGLN 3157



 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTAVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLR-----LVVTDED 3468



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 AVHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3039 GKLIMQ-------ISAADADIRSNA 3056



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEERDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE ++ + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2340 GLISLLRTLDYEQSQRHTIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 2399

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2400 SEHAPHGHFV-------TCVKAYDADS 2419



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKKQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    KA   ++ V ++D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLDVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1803 SNALLVYHIVEPSVHKYFAIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1862

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V +H++D ND  P F +
Sbjct: 1863 ANVTIHVIDINDCPPVFAK 1881


>gi|355749714|gb|EHH54113.1| hypothetical protein EGM_14874 [Macaca fascicularis]
          Length = 4591

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 65/96 (67%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   +Y L +  TNMAG     +V V + D NDN+P F Q  YT
Sbjct: 1715 INPHSGSIITQKALDFETLPVYTLIIQGTNMAGLSTNTTVSVQLQDENDNSPVFMQAEYT 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1775 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1810



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2237 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNAPVFAQQSYAATLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2297 EASVIGTSVVQ-------VRATDADSEPN 2318



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A      +   A   V + + D NDN+P F    Y  +
Sbjct: 2761 GRLKLEKSLDHEITKWYQFSILARCTQDDREMVASVDVSIQVKDANDNSPVFESSPYEAF 2820

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN+
Sbjct: 2821 IVENLPGGSRVIQ-------IRASDADSGTNS 2845



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3182 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3241

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3242 VSEDILVGTEVLQ-------VYAASRDIEANA 3266



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3072 KFQLNPDTGELKTSAPLDREEQAVYHLLVRATDRGGRFCQASIVLALEDVNDNAPEFSAD 3131

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             Y   V E    G L+         ++A D DS  N
Sbjct: 3132 PYAITVFENTEPGTLLTR-------VQATDADSGLN 3160



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L++ AT+        V +V V++ D NDN P F+Q  YT  V
Sbjct: 3288 GAVFIIENLDYESSHEYYLTIEATDGGTPSLSDVATVNVNVTDVNDNAPVFSQDTYTAVV 3347

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3348 SEDAVLEQSVIT-------VLADDADGPSNSHIHYSIIDGN 3381



 Score = 41.2 bits (95), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3388 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3447

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3448 YSVIIQENKPVGFSVLR-----LVVTDED 3471



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +LT + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2549 GQILTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2608

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2609 GSSAAKGTSVIK-------VLASDADEGSNA 2632



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 AVHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2984 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3041

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3042 GKLIMQ-------ISAADADIRSNA 3059



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2864 AINMETGWITTLKELDHEERDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2923

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2924 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2951



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE ++ + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2343 GLISLLRTLDYEQSQRHTIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SEHAPHGHFV-------TCVKAYDADS 2422



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKKQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    KA   ++ V ++D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLDVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D     + P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVER 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GAVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1806 SNALLVYHIVEPSVHKYFAIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1865

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V +H++D ND  P F +
Sbjct: 1866 ANVTIHVIDINDCPPVFAK 1884


>gi|355687770|gb|EHH26354.1| hypothetical protein EGK_16302 [Macaca mulatta]
          Length = 4591

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 65/96 (67%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   +Y L +  TNMAG     +V V + D NDN+P F Q  YT
Sbjct: 1715 INPHSGSIITQKALDFETLPVYTLIIQGTNMAGLSTNTTVSVQLQDENDNSPVFMQAEYT 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1775 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1810



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y L++ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2237 GVINVIAPLDFEAHPAYKLNIRATDSLTGAHAEVFVDIIVEDINDNAPVFAQQSYAATLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2297 EASVIGTSVVQ-------VRATDSDSEPN 2318



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  SV A      +   A   V + + D NDN+P F    Y  +
Sbjct: 2761 GRLKLEKSLDHEITKWYQFSVLARCTQDDREMVASVDVSIQVKDANDNSPVFESSPYEAF 2820

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN+
Sbjct: 2821 IVENLPGGSRVIQ-------IRASDADSGTNS 2845



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3182 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3241

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3242 VSEDILVGTEVLQ-------VYAASRDIEANA 3266



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L++ AT+        V +V V++ D NDN P F+Q  YT  V
Sbjct: 3288 GAVFIIENLDYESSHEYYLTIEATDGGTPSLSDVATVNVNVTDVNDNAPVFSQDTYTAVV 3347

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3348 SEDAVLEQSVIT-------VLADDADGPSNSHIHYSIIDGN 3381



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 3072 KFQLNPDTGELKTSAPLDREEQAVYHLLVRATDRGGRFCQASIVLTLEDVNDNAPEFSAD 3131

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             Y   V E    G L+         ++A D DS  N
Sbjct: 3132 PYAITVFENTEPGTLLTR-------VQATDADSGLN 3160



 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3388 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3447

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3448 YSVIIQENKPVGFSVLR-----LVVTDED 3471



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 AVHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 2984 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3041

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        I A D D  +NA
Sbjct: 3042 GKLIMQ-------ISAADADIRSNA 3059



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2549 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2608

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2609 GSSAAKGTSVIK-------VLASDADEGSNA 2632



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2864 AINMETGWITTLKELDHEERDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2923

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2924 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2951



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE ++ + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2343 GLISLLRTLDYEQSQRHTIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SEHAPHGHFV-------TCVKAYDADS 2422



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKKQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    KA   ++ V ++D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLDVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D     + P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVER 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GAVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 2    SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ I++P++H  +      G + T   LDYE T  ++ +V   +M      A+  
Sbjct: 1806 SNALLVYHIVEPSVHKYFAIDSSTGAIHTVLSLDYEETSTFHFTVQVHDMGTPRLFAEYA 1865

Query: 52   CSVIVHILDRNDNTPYFTQ 70
             +V +H++D ND  P F +
Sbjct: 1866 ANVTIHVIDINDCPPVFAK 1884


>gi|426252195|ref|XP_004019801.1| PREDICTED: protocadherin Fat 3 [Ovis aries]
          Length = 4477

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 64/96 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1715 INPYSGVITTRKVLDYERTSSYQLIVQATNMAGMASNVTVSIQIVDENDNAPVFLFSQYS 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V ++ + PLVIRA D DS  NALL
Sbjct: 1775 GSLSEAAPINSIVRSSDNSPLVIRATDADSNRNALL 1810



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1412 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1470

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1471 D------VLPDTEI-LQIEATDRDEK 1489



 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F QL Y 
Sbjct: 421 INPRSGLIVTAQPLNTIKKEVYRLGVT--NKEG-DLKTQVTISIEDANDHTPEFQQLLYE 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 478 AFVNESVPVGTSVLT-------VSASDKDKGENGYI 506



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  ++ + + D NDN P F Q  Y   +S
Sbjct: 2237 GVLKVISPLDYEMTSVYKLTVRASDALTGARAEVTIDLLVNDVNDNPPIFGQPTYNTTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N ++
Sbjct: 2297 EASLIGTPVLQ-------VVSTDADSGNNKMV 2321



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2343 GLILTARMLDHESVQHCTLKVRATDNGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I ++ V        + +  VIV++ D ND++P
Sbjct: 1504 SMRKFRIDPNTGVLYTAERLDHEAQDKHILHVMVRDQEFPYRRNLARVIVNVEDANDHSP 1563

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1564 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1600



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE+ R + L V A +       AV +V +++ D NDN P F+
Sbjct: 3282 KFRINPKTGGISVSEALDYESCRKFYLVVEARDGGTPALSAVTTVGINLTDVNDNPPEFS 3341

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3342 QDVYSAVISEDALVGDSV-------ILLIAEDADSQPNGQI 3375



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L + A  + M    +  +V + I D NDN+P FT  
Sbjct: 3389 AVDPVLGLVKVKKKLDRERVSGYSLLIQAVDSGMPPMSSTATVNIDISDVNDNSPVFTPA 3448

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N T  + E  P+G  VL        +   DKDS  N 
Sbjct: 3449 NATAVIQENKPVGTSVLQ-------LMVTDKDSFHNG 3478



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    Y L V AT+ +  +A+ S   V + +LD NDN P F + +Y   
Sbjct: 3184 GIVVLERPLDREQQSSYTLRVRATDQSPGRALSSLATVSITVLDVNDNPPVFERRDYLVS 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3244 VPEDTSPGTQV-------LAVFATSKDIGTNA 3268



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E   ++  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2872 GWISTLKDLDHETDPVFTFSVVASDLGEAFSLSSTALVSVTVTDINDNAPVFAHEVYRGN 2931

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E    Y+L   AT+  G      V + + D NDN P F+  +Y 
Sbjct: 3077 LDPDSGELKTLAPLDRERVPAYSLIARATDGGGRFCQSDVRLTLEDVNDNPPVFSSDHYN 3136

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3137 ACVYENTATKALL 3149



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V V +LD NDN P F   NY   
Sbjct: 2762 GTIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSNYETV 2821

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2822 IMEGMPVGTRLTQ-------VRAMDVDWGANG 2846



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E   +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 780 GQLQVLMPMDREHRDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPIFIQDSYSVNI 839

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 840 LESSSIGTEIIQ-------VEASDKDLGSNG 863



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+ LD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT  + E  P 
Sbjct: 2986 KRHLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTASLPEDVPS 3043

Query: 84   GALVL 88
              ++L
Sbjct: 3044 NKIIL 3048


>gi|162417991|ref|NP_001104793.1| protocadherin Fat 3 precursor [Gallus gallus]
          Length = 4557

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ ++K LDYE    Y L+V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1717 INPYSGVITSQKALDYEHASFYQLTVQATNMAGMASNATVNIQIVDENDNPPVFLFSQYS 1776

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1777 GSISEAAPINSIVRSTNNSPLVIRATDADSNQNALL 1812



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VI+++ D N
Sbjct: 1502 IDAISMRKFRIDPSAGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIINVEDSN 1561

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1562 DHSPYFTSPLYEASVYESAAVGSAVLQVTAL-------DKDKGENAEL 1602



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   ++ L V A++ + GA+A  +V + I D NDN P F Q  Y   +S
Sbjct: 2239 GVLSVISPLDYEINSLFKLMVRASDALTGARAEVTVDLVINDVNDNPPVFDQSAYNATLS 2298

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D DS+ N ++
Sbjct: 2299 EASLIGTPVLQ-------VVATDADSDNNKIV 2323



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +  +L V AT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2345 GLILTARMLDHELIQQCSLKVRATDNGFPPLSSEVLVSISITDMNDNPPVFNQLIYESYV 2404

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2405 SELAPRGHFV-------TCVQASDADS 2424



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE+ + + L V A +       AV +V V++ D NDN P F+Q+ Y+  +
Sbjct: 3292 GAISISESLDYESCKDFYLVVEAKDGGTPALSAVTTVNVNVTDVNDNAPKFSQVVYSAVI 3351

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A IG  V       +++ AED DS +N  +
Sbjct: 3352 SEDAAIGDSV-------IMLIAEDLDSPSNGQI 3377



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN++V  T+     A   V + +LD NDN P F+Q +Y   +SE
Sbjct: 1414 GTIVIAKPLDAEQRSIYNMTVEVTDGTNV-ATTQVFIKVLDNNDNGPEFSQPSYDVTISE 1472

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   +L +T + L I A D+D +
Sbjct: 1473 D------ILPDTEI-LQIEAIDRDEK 1491



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            ++ P  G++  KK LD E    Y+L + A +        SV V+  I D NDN+P FT  
Sbjct: 3391 SVDPGSGLVKVKKKLDRERISGYSLVIQARDSGTPPLSSSVTVNVDISDVNDNSPVFTPA 3450

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NYT  + E  P+G  +L      LV+   DKDS  N 
Sbjct: 3451 NYTAVIQENKPVGTSILQ-----LVVT--DKDSFHNG 3480



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++ T + L      +Y L V        KA   V + + D ND+TP F Q +Y+
Sbjct: 422 INPITGLITTARSLKIIEKDLYELEVYTNKGDDLKA--QVTIRLEDANDHTPEFQQTSYS 479

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  V       L + A DKD   N  +
Sbjct: 480 SFVNESVPVGFSV-------LAVSAVDKDRGENGYI 508



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L +  PLD E   +YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3079 LDPENGELKSLAPLDREKIPVYNLVARATD--GGGRFCQSEIHLILEDVNDNPPVFSSDH 3136

Query: 73   YTGYVSEAAPIGALV 87
            YT  V E     AL+
Sbjct: 3137 YTACVYENTATKALL 3151



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+++ + PLD E    YN+SV A++ +      +  +V + +LD NDN P F + +Y   
Sbjct: 3186 GIIILEHPLDRELQSSYNISVKASDQSIVLTLSSFATVTITVLDINDNPPVFERRDYLVT 3245

Query: 77   VSEAAPIGALVL----------TNTSLPLVIRAEDKDSETN 107
            V E    G  VL          TN  +  +IR+ ++  + N
Sbjct: 3246 VPEDTSPGTEVLSVFATSQDIGTNAEITYLIRSGNEKGKFN 3286



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD+E    ++  V AT   +         V V +LD NDN P F   +Y   
Sbjct: 2764 GLIKLDKRLDHETNSAFHFKVAATIQLDKVDIVLTVDVEVKVLDVNDNKPMFETASYDAI 2823

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  ++        ++A D DS  N 
Sbjct: 2824 IMEGMPIGTKLMQ-------VKAVDADSSANG 2848



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   +Y L++TAT+        +V V + D NDN+P   Q+ YT    E  P  
Sbjct: 2988 KRPLDREEQDVYYLNITATDGLFVTQ-AAVEVTVTDVNDNSPVCEQVAYTALFPEDIPSN 3046

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             ++L        I A+D D  +N 
Sbjct: 3047 KVILK-------ISAKDADIGSNG 3063



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GVL    PLD E T +Y L++T  ++   +  A   + V + D NDN P F Q +Y+  +
Sbjct: 782 GVLKVLMPLDREKTDLYILNITIYDLGNPQKSAWRLLTVTVGDANDNKPIFLQDSYSVNI 841

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+  +G  ++        + A DKD  +N 
Sbjct: 842 LESTSLGTEIIQ-------VEARDKDLGSNG 865



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  +V A+++    ++ S   V V + D NDN P F    Y G 
Sbjct: 2874 GWISTLKDLDHEKDPTFTFAVVASDLGETLSLSSTTLVSVAVTDINDNAPVFEHEVYRGS 2933

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2934 VKESDPPGEVV 2944



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N  TPYF      
Sbjct: 991  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLYTPYFPDFAVI 1050

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL      +V R ED  +D E   ++ DGS
Sbjct: 1051 GSVKENSRIGTSVLQ-----VVARDEDSGRDGEIQYSIRDGS 1087



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +LT + LD E     ++ +   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2551 GQILTTERLDRENLLESDIGIFLRALDGGGRTTFCTVRVIVVDENDNAPQFMTVEYRASV 2610

Query: 78   SEAAPIGALV 87
                  G LV
Sbjct: 2611 KADVGKGYLV 2620


>gi|345311026|ref|XP_001519720.2| PREDICTED: protocadherin Fat 1-like, partial [Ornithorhynchus
           anatinus]
          Length = 2269

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 63/97 (64%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +++P  GV+ T++ LD+E    Y L V ATNMAG  A  +V V + D ND+ P F +  Y
Sbjct: 178 SVNPHSGVITTRRGLDFEVQASYLLEVRATNMAGQAAQATVRVRLRDENDHAPVFPRAGY 237

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           TG VSEAA  G+LVLT    PLV+RA D+DS  NA+L
Sbjct: 238 TGLVSEAAGPGSLVLTEDGAPLVVRAVDEDSGANAML 274



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G L    PLD+EA   Y L+V AT+ + GA A   V + + D NDN P F Q+ Y   +S
Sbjct: 709 GTLHVAAPLDFEAHPAYKLTVRATDSLTGAHADVFVDIVVRDVNDNPPRFNQMAYASTLS 768

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           EAA +G LV+        +RA D D E+   L
Sbjct: 769 EAAAVGTLVVW-------VRAADADLESGRGL 793



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            LHP  G L T  PLD E    YNL VTAT+  G     SV + + D NDN P FT     
Sbjct: 1545 LHPETGELKTFGPLDREQQATYNLLVTATDGGGRSCCASVQLWLDDVNDNAPVFT----- 1599

Query: 75   GYVSEAAPIGALVLTNTS--LPLV-IRAEDKDSETNALL 110
                 A P  A V  NT    PL  I+A D D+  N  +
Sbjct: 1600 -----ADPFTATVFENTEPRTPLTRIQATDADTGLNGKI 1633



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 4    PVQLFAILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHIL 59
            P Q  A+L+  A+HP  G L T + LD E    + + V A++    +   +  +V V + 
Sbjct: 1323 PAQDRAVLEAFAVHPDSGWLTTLRELDREERATFRVLVVASDCGERERRSSTATVEVTVA 1382

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            D NDN P F+   Y G VSEA P G +V
Sbjct: 1383 DENDNPPRFSAEVYKGTVSEADPSGGVV 1410



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 15/111 (13%)

Query: 8    FAILKPALHPPYGV------LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
            +AI+    H  +GV      +     LDYE  R Y L+V AT+        V +V +++ 
Sbjct: 1740 YAIVGGNEHGRFGVDAATGAVFVSASLDYEQARDYCLTVEATDGGSPPLSDVATVNINVT 1799

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D ND+ P F+Q +YT  VSE A     +LT       + A+D D  +N+L+
Sbjct: 1800 DINDHAPVFSQDSYTAVVSEDAAPDQSILT-------VSADDADGPSNSLI 1843



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  ++ LD E   ++ L+V A +   A    A  +++V +LD NDN P F    Y G 
Sbjct: 1652 GIVWLERSLDREVQAVHTLTVRAVDRGPAGQLSATATLVVSVLDINDNPPEFEYREYGGA 1711

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V+E  P+G  VL        + A  +D E NA
Sbjct: 1712 VAEDVPVGTEVLR-------VYAASRDVEANA 1736



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 49  KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    ++V ++D ND+ P+FT  +Y G V E+A +G+ VL  T+L       D+D   NA
Sbjct: 10  RNFARMVVDVIDANDHAPWFTSASYEGQVYESAAVGSQVLQITAL-------DRDQGENA 62



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E  + R+  + + A +  G  A C+V V + D ND+ P F    Y   V
Sbjct: 1017 GRLFTIQELDRENPSERVVPVRLMARDGGGRAAFCTVSVILTDTNDHAPRFRAAIYEADV 1076

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                P G  VLT       + A D D  +NA
Sbjct: 1077 DAGTPRGKPVLT-------VLATDADEGSNA 1100



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILD 60
            P ++FA+ + +     G L   + LD+EA+R Y ++V A        V +   V + + D
Sbjct: 1220 PSEVFAVDRRS-----GRLTLLRSLDHEASRWYQITVRARGRQRGHEVTASVDVSIRVGD 1274

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             NDN+P      Y   V+E  P+G+ V+        +RA D D
Sbjct: 1275 VNDNSPMPEADPYAASVAENRPVGSPVVQ-------VRASDPD 1310



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQ 70
           + P  G L T + LD    R Y L V A +       A+    V+V + D  D+ P F+ 
Sbjct: 79  IDPVLGSLRTARELDRRRHREYTLVVRAVDRGLPPLSAETTAHVLVTLSD--DDAPRFSA 136

Query: 71  LNYTGYVSEAAPIG 84
             Y G VSEAAP G
Sbjct: 137 GEYAGEVSEAAPAG 150



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 22/119 (18%)

Query: 7   LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTATNMA----------GAKAV 51
           +F IL P     L P  GVL T   P D E    +++ V AT              A+A 
Sbjct: 480 IFRILNPDGRFRLGPTSGVLSTTGVPFDREQQAAFDVVVEATEAGREPGAEPEPGAARAH 539

Query: 52  CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V V + D NDN P F  L Y+  VS  A  G  V   T++       D+D   N L+
Sbjct: 540 VLVRVAVEDVNDNAPTFLHLPYSASVSVDAQAGHPVRMVTAV-------DRDVGRNGLV 591



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 10/88 (11%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSEA 80
            +  ++ LD E    Y L+VTAT+  G     +V+ V +LD NDN+P   +  YT  + E 
Sbjct: 1451 VFVQRALDREEKDSYLLNVTATD--GTFTAGAVVEVKVLDANDNSPVCDKTLYTETIPED 1508

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G L+         + A D D  TNA
Sbjct: 1509 SLPGRLITQ-------VSATDADIRTNA 1529


>gi|344243496|gb|EGV99599.1| Protocadherin Fat 3 [Cricetulus griseus]
          Length = 2774

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 495 INPYSGVITTRRALDYEQTSAYQLIIQATNMAGMASNATVSIQIVDENDNPPVFLSSQYS 554

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 555 GSLSEAAPINSIVSSLDNSPLVIRATDADSNQNALL 590



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 5   VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D N
Sbjct: 280 IDTMSMRKFRMDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDAN 339

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           D++PYFT   Y   V E+A +G++VL  T+L       DKD   NA L
Sbjct: 340 DHSPYFTSPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 380



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L VTAT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 1123 GLILTARMLDHELVQHCTLKVTATDNGFPSMSSEVLVHIYISDVNDNPPVFNQLIYESYV 1182

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1183 SELAPRGHFV-------TCVQASDADS 1202



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 192 GTIVIAKPLDAEQRSVYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPHYDVTISE 250

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L I A D+D +
Sbjct: 251 D------VLPDTEI-LQIEATDRDEK 269



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++ ++PLD E    YN+SV AT+ +  +++    SV + +LD NDN P F + +Y   
Sbjct: 1964 GVIILERPLDREQQSSYNISVRATDQSPRQSLSSLASVTITVLDINDNPPVFERRDYLVT 2023

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL+       + A  KD  TNA
Sbjct: 2024 VPEDTSLGTQVLS-------VFATSKDIGTNA 2048



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L + A +  +    +  +V + I D NDN+P FT  
Sbjct: 2169 AVDPILGLVKVKKKLDRERVSGYSLLIQAVDSGIPSMSSTTTVNIDISDVNDNSPVFTPA 2228

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 2229 NYTAVIQENKPVGTSIL 2245



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++ SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 1652 GWISTLKDLDHETDPAFSFSVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 1711

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1712 VKESDPPGEVV 1722



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A   V V + D NDN P F Q  Y   +S
Sbjct: 1017 GVLKVISPLDYEVTSVYKLTVRASDALTGARAEVIVDVLVDDVNDNPPVFDQPTYNTTLS 1076

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N L+
Sbjct: 1077 EASLIGTPVLQ-------LVSTDADSGNNKLV 1101



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G     +V++ + D NDN P F+  +YT
Sbjct: 1857 LDPESGELKTLALLDRERVPVYNLIARATDGGGRFCHANVLLLLEDVNDNPPVFSSNHYT 1916

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 1917 ACVYENTATKALL 1929



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       A  ++ + + + NDN P F+
Sbjct: 2062 KFRINPKTGGISVLEALDYETCKRFYLVVEAKDGGTPALSAAATISIDLTNVNDNPPQFS 2121

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A      L   S+ L+I AED DS+ N  +
Sbjct: 2122 QDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 2155



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TA++ +   +A+  V V   D NDN+P   Q+ Y+  + E  P 
Sbjct: 1766 KRPLDREEQDVYFLNITASDGLFVTQAMVEVTVS--DVNDNSPICDQVAYSASLPEDIPS 1823

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 1824 NKIILK-------VSAKDADIGSNG 1841



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V V +LD NDN P F   +Y   
Sbjct: 1542 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSSYETI 1601

Query: 77   VSEAAPIG 84
            + E  P+G
Sbjct: 1602 IMEGMPVG 1609


>gi|326914508|ref|XP_003203567.1| PREDICTED: protocadherin Fat 3-like [Meleagris gallopavo]
          Length = 3426

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ ++K LDYE    Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 586 INPYSGVITSQKGLDYERASFYQLIVQATNMAGMASNATVNIQIVDENDNPPVFLFSQYS 645

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAPI ++V + ++ PLVIRA D DS  NALL
Sbjct: 646 GSISEAAPINSIVRSTSNSPLVIRATDADSNQNALL 681



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 5   VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VI+++ D N
Sbjct: 371 IDAISMRKFRIDPSAGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIINVEDSN 430

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           D++PYFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 431 DHSPYFTSPLYEASVYESAAVGSAVLQVTAL-------DKDKGENAEL 471



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   ++ L V A++ + GA+A  +V + I D NDN P F Q  Y   +S
Sbjct: 1108 GVLSVISPLDYEINSLFKLMVRASDALTGARAEVTVDLVINDVNDNPPVFDQSAYNATLS 1167

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D DS+ N ++
Sbjct: 1168 EASLIGTPVLQ-------VVATDADSDNNKIV 1192



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +  +L V AT+         V+V I   D NDN P F QL Y  YV
Sbjct: 1214 GLILTARMLDHELIQQCSLKVRATDNGFPPLSSEVLVSISITDMNDNPPVFNQLIYESYV 1273

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1274 SELAPRGHFV-------TCVQASDADS 1293



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE+ + + L V A +       AV +V V++ D NDN P F+Q+ Y+  +
Sbjct: 2161 GAISISESLDYESCKDFYLVVEAKDGGTPALSAVTTVNVNVTDVNDNAPKFSQVVYSAVI 2220

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A IG  V       +++ AED DS +N  +
Sbjct: 2221 SEDAAIGDSV-------IMLIAEDLDSPSNGQI 2246



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   IYN++V  T+     A   V + +LD NDN P F+Q +Y   +SE
Sbjct: 283 GTIVIAKPLDAEQRSIYNMTVEVTDGTNI-ATTQVFIKVLDNNDNGPEFSQPSYDVTISE 341

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  +L +T + L I A D+D +
Sbjct: 342 D------ILPDTEI-LQIEAIDRDEK 360



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            ++ P  G++  KK LD E    Y+L + A +        SV V+  I D NDN+P FT  
Sbjct: 2260 SVDPGSGLVKVKKKLDRERISGYSLVIQARDSGTPPLSSSVTVNVDISDVNDNSPVFTPA 2319

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NYT  + E  P+G  +L      LV+   DKDS  N 
Sbjct: 2320 NYTAVIQENKPVGTSILQ-----LVVT--DKDSFHNG 2349



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L +  PLD E   +YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 1948 LDPENGELKSLAPLDREKIPVYNLVARATD--GGGRFCQSEIHLILEDVNDNPPVFSSDH 2005

Query: 73   YTGYVSEAAPIGALV 87
            YT  V E     AL+
Sbjct: 2006 YTACVYENTATKALL 2020



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+++ + PLD E    YN+SV A++ +      +  +V + +LD NDN P F + +Y   
Sbjct: 2055 GIIILEHPLDRELQSSYNISVKASDQSIVLTLSSFATVTITVLDINDNPPVFERRDYLVT 2114

Query: 77   VSEAAPIGALVL----------TNTSLPLVIRAEDKDSETN 107
            V E    G  VL          TN  +  +IR+ ++  + N
Sbjct: 2115 VPEDTSPGTEVLSVFATSQDIGTNAEITYLIRSGNEKGKFN 2155



 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   IY L++TAT+        +V V + D NDN+P   Q+ YT    E  P  
Sbjct: 1857 KRPLDREEQDIYYLNITATDGLFVTQ-AAVEVTVTDVNDNSPVCEQVAYTALFPEDIPSN 1915

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             ++L        I A+D D  +N 
Sbjct: 1916 KVILK-------ISAKDADIGSNG 1932



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD+E    ++  V AT   +         V V +LD NDN P F   +Y   
Sbjct: 1633 GLIKLDKRLDHETNSAFHFKVAATIQLDKVDIVLTVDVEVKVLDVNDNKPMFETASYDAI 1692

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  ++        ++A D DS  N 
Sbjct: 1693 IMEGMPIGTKLMQ-------VKAVDVDSSANG 1717



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  +V A+++    ++ S   V V + D NDN P F    Y G 
Sbjct: 1743 GWISTLKDLDHEKDPTFTFAVVASDLGETLSLSSTTLVSVAVTDINDNAPVFEHEVYRGS 1802

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1803 VKESDPPGEVV 1813


>gi|432090713|gb|ELK24052.1| Protocadherin Fat 3 [Myotis davidii]
          Length = 3377

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 64/96 (66%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T+K LDYE T  Y L+V ATNMAG  +  SV + I+D NDN P F    Y+
Sbjct: 549 INPYSGVITTRKALDYERTSSYLLTVQATNMAGMASNVSVNIQIVDENDNAPIFLFSQYS 608

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 609 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 644



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   ++
Sbjct: 1071 GVLKVVSPLDYEVTSVYKLTVRASDALTGARAEVAVDLLVNDVNDNPPVFDQPTYNTTLT 1130

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N ++
Sbjct: 1131 EASLIGTPVLQ-------VVSTDVDSENNKMV 1155



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 1177 GLILTARMLDHESVQHCTLKVRATDSGFPSLSSEVLVHIYISDINDNPPVFNQLIYESYV 1236

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1237 SELAPRGHFV-------TCVQASDADS 1256



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   +YN++V  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 196 GTIVIAKPLDAEQRSVYNMTVEVTDGTNI-AVTQVFIKVLDNNDNGPEFSQPSYDVTISE 254

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L I A D+D +
Sbjct: 255 D------VLPDTEI-LQIEATDRDEK 273



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   
Sbjct: 2018 GIIILEQPLDREQQPSYNISVQATDQSPGRALSSLATVTITVLDINDNPPVFERRDYLVT 2077

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  VLT       + A  KD  TNA
Sbjct: 2078 VPEDTSPGTQVLT-------VFATSKDIGTNA 2102



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 288 SMRKFRMDPSTGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIVNVEDANDHSP 347

Query: 67  YFTQLNYTGYVSEAAPIGALVL 88
           YFT   Y   V E+A +G+ VL
Sbjct: 348 YFTNPLYEASVFESAALGSAVL 369



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +L  + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 2116 KFRINPRTGGILVSEVLDYELCKKFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPTFS 2175

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 2176 QDVYSAVISEDALVGDSV-------ILLIAEDADSQPNGQI 2209



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA------KAVCSVIVHILDRNDNTPY 67
            A+ P  G++  KK LD E    Y+L V A             +  +V + I D NDN+P 
Sbjct: 2223 AVDPVLGLVKVKKKLDRERVSGYSLLVQAXXXXXXXXXPVMSSTATVNIDISDVNDNSPV 2282

Query: 68   FTQLNYTGYVSEAAPIGALVL 88
            FT  NYT  + E  P+G  +L
Sbjct: 2283 FTPANYTAVIQENKPVGTSIL 2303



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A    A+  V V + D NDN P F    Y G 
Sbjct: 1706 GWISTLKDLDHETDPSFTFSVVASDLGEAFSLSAMALVSVRVTDINDNAPVFAHEVYQGN 1765

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1766 VKESDPPGEVV 1776



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 49  KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + +  VIV++ D ND++PYFT   Y   V E+A +G+ VL  T+L       DKD   NA
Sbjct: 380 RNLARVIVNVEDANDHSPYFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENA 432

Query: 109 LL 110
            L
Sbjct: 433 EL 434



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E    Y L++TAT+ +   +A+  V V   D NDN+P   Q++YT    E  P 
Sbjct: 1820 KRPLDREEQDAYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVSYTALFPEDIPS 1877

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 1878 NKIILK-------VSAQDADIGSNG 1895



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T  PLD E    Y L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 1911 LDPESGQLKTSSPLDRERVPAYKLIARATD--GGGRFCQSDIHLILEDVNDNPPVFSSAH 1968

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 1969 YHACVYENTANKALL 1983



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 1596 GTIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTADVDIKVLDLNDNRPVFETASYETM 1655

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  PIG  +         +RA D D   N 
Sbjct: 1656 VMEGMPIGTKLTQ-------VRAIDMDWGANG 1680


>gi|332634638|ref|NP_001193811.1| protocadherin Fat 3 precursor [Bos taurus]
 gi|296471991|tpg|DAA14106.1| TPA: protocadherin Fat 3-like [Bos taurus]
          Length = 4555

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1715 INPYSGVITTRKALDYERTSSYQLIVQATNMAGMASNVTVNIQIVDENDNAPVFLFSQYS 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1775 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1810



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1412 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1470

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1471 D------VLPDTEI-LQIEATDRDEK 1489



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F QL Y 
Sbjct: 421 INPQSGLIVTAQPLNTIKKEVYRLGVT--NKEG-DLKTQVTISIEDANDHTPEFQQLLYE 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 478 AFVNESVPVGTSVLT-------VSASDKDKGENGYI 506



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  ++ + + D NDN P F Q  Y   +S
Sbjct: 2237 GVLKVISPLDYEMTSVYKLTVRASDALTGARAEVTIDLLVNDVNDNPPIFGQPTYNTTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N ++
Sbjct: 2297 EASLIGTPVLQ-------VVSTDADSGNNKMV 2321



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2343 GLILTARMLDHESVQHCTLKVRATDNGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I ++ V        + +  VIV++ D ND++P
Sbjct: 1504 SMRKFRIDPSTGVLYTAERLDHEAQDKHILHIMVRDQEFPYRRNLARVIVNVEDANDHSP 1563

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1564 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1600



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + M    +  +V + I D NDN+P FT  
Sbjct: 3389 AVDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGMPAMSSTATVNIDISDVNDNSPVFTPA 3448

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N T  + E  P+G  VL        +   DKDS  N 
Sbjct: 3449 NATAVIQENKPVGTSVLQ-------LMVTDKDSFHNG 3478



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  R + L V A +       AV +V +++ D NDN P F+
Sbjct: 3282 KFRINPKTGGISVSEALDYELCRKFYLVVEAKDGGTPALSAVTTVGINLTDVNDNPPEFS 3341

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3342 QDVYSAVISEDALVGDSV-------ILLIAEDADSQPNGQI 3375



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E   ++  SV A+++  A ++ S   V V + D NDNTP F    Y G 
Sbjct: 2872 GWISTLKDLDHETDPMFTFSVVASDLGEAFSLSSTALVSVRVTDINDNTPVFAHKVYRGN 2931

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    Y L V AT+ +  +A+ S   + + +LD NDN P F + +Y   
Sbjct: 3184 GIVVLERPLDREQQSSYTLRVQATDQSPGRALSSLATISITVLDVNDNPPVFERRDYLVS 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3244 VPEDTSPGTQV-------LAVFATSKDIGTNA 3268



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +   A     V V +LD NDN P F   NY   
Sbjct: 2762 GTIKLDKRLDHEVSPAFHFKVAATMPLDKVDAVFTVDVDVKVLDLNDNKPVFETSNYETI 2821

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2822 IMEGMPVGTKLTQ-------VRAMDVDWGANG 2846



 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E    Y+L   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3077 LDPESGELKTLAPLDRERVPAYSLVARATDGGGRFCQSDLRLTLEDVNDNPPVFSSDHYN 3136

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3137 ACVYENTATKALL 3149



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E   +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 780 GQLQVLMPMDREHRDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPIFLQDSYSVNI 839

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+ LD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT  + E  P 
Sbjct: 2986 KRHLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTALLPEDIPS 3043

Query: 84   GALVL 88
              ++L
Sbjct: 3044 NKIIL 3048


>gi|440909070|gb|ELR59020.1| Protocadherin Fat 3, partial [Bos grunniens mutus]
          Length = 3373

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 494 INPYSGVITTRKALDYERTSSYQLIVQATNMAGMASNVTVNIQIVDENDNAPVFLFSQYS 553

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 554 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 589



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 191 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 249

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L I A D+D +
Sbjct: 250 D------VLPDTEI-LQIEATDRDEK 268



 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  ++ + + D NDN P F Q  Y   +S
Sbjct: 1016 GVLKVISPLDYEMTSVYKLTVRASDALTGARAEVTIDLLVNDVNDNPPIFGQPTYNTTLS 1075

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N ++
Sbjct: 1076 EASLIGTPVLQ-------VVSTDADSGNNKMV 1100



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 1122 GLILTARMLDHESVQHCTLKVRATDNGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 1181

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1182 SELAPRGHFV-------TCVQASDADS 1201



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           ++ K  + P  GVL T + LD+EA    I ++ V        + +  VIV++ D ND++P
Sbjct: 283 SMRKFRIDPSTGVLYTAERLDHEAQDKHILHIMVRDQEFPYRRNLARVIVNVEDANDHSP 342

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 343 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 379



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + M    +  +V + I D NDN+P FT  
Sbjct: 2168 AVDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGMPAMSSTATVNIDISDVNDNSPVFTPA 2227

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N T  + E  P+G  VL        +   DKDS  N 
Sbjct: 2228 NATAVIQENKPVGTSVLQ-------LMVTDKDSFHNG 2257



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  R + L V A +       AV +V +++ D NDN P F+
Sbjct: 2061 KFRINPKTGGISVSEALDYELCRKFYLVVEAKDGGTPALSAVTTVGINLTDVNDNPPEFS 2120

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 2121 QDVYSAVISEDALVGDSV-------ILLIAEDADSQPNGQI 2154



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    Y L V AT+ +  +A+ S   + + +LD NDN P F + +Y   
Sbjct: 1963 GIIVLERPLDREQQSSYTLRVQATDQSPGQALSSLATISITVLDVNDNPPVFERRDYLVS 2022

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 2023 VPEDTSPGTQV-------LAVFATSKDIGTNA 2047



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E   ++  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 1651 GWISTLKDLDHETDPMFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAHEVYRGN 1710

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1711 VKESDPPGEVV 1721



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E    Y+L   AT+  G      V + + D NDN P F+  +Y 
Sbjct: 1856 LDPESGELKTLAPLDRERVPAYSLIARATDGGGRFCQSDVRLTLEDVNDNPPVFSSDHYN 1915

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 1916 ACVYENTATKALL 1928



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+ LD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT  + E  P 
Sbjct: 1765 KRHLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTALLPEDIPS 1822

Query: 84   GALVL 88
              ++L
Sbjct: 1823 NKIIL 1827


>gi|354475386|ref|XP_003499910.1| PREDICTED: protocadherin Fat 3-like [Cricetulus griseus]
          Length = 4555

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1715 INPYSGVITTRRALDYEQTSAYQLIIQATNMAGMASNATVSIQIVDENDNPPVFLSSQYS 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1775 GSLSEAAPINSIVSSLDNSPLVIRATDADSNQNALL 1810



 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D N
Sbjct: 1500 IDTMSMRKFRMDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDAN 1559

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G++VL  T+L       DKD   NA L
Sbjct: 1560 DHSPYFTSPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 1600



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L VTAT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2343 GLILTARMLDHELVQHCTLKVTATDNGFPSMSSEVLVHIYISDVNDNPPVFNQLIYESYV 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1412 GTIVIAKPLDAEQRSVYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPHYDVTISE 1470

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1471 D------VLPDTEI-LQIEATDRDEK 1489



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 421 INPRSGLIVTAQPLNIVKKEVYKLEVT--NKEG-DVKAQVTIGIEDANDHTPEFQQTVYE 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 478 TFVNESIPVGTNVLT-------VSASDKDKGENGYI 506



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++ ++PLD E    YN+SV AT+ +  +++    SV + +LD NDN P F + +Y   
Sbjct: 3184 GVIILERPLDREQQSSYNISVRATDQSPRQSLSSLASVTITVLDINDNPPVFERRDYLVT 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL+       + A  KD  TNA
Sbjct: 3244 VPEDTSLGTQVLS-------VFATSKDIGTNA 3268



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L + A  + +    +  +V + I D NDN+P FT  
Sbjct: 3389 AVDPILGLVKVKKKLDRERVSGYSLLIQAVDSGIPSMSSTTTVNIDISDVNDNSPVFTPA 3448

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3449 NYTAVIQENKPVGTSIL 3465



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++ SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2872 GWISTLKDLDHETDPAFSFSVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 2931

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A   V V + D NDN P F Q  Y   +S
Sbjct: 2237 GVLKVISPLDYEVTSVYKLTVRASDALTGARAEVIVDVLVDDVNDNPPVFDQPTYNTTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N L+
Sbjct: 2297 EASLIGTPVLQ-------LVSTDADSGNNKLV 2321



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G     +V++ + D NDN P F+  +YT
Sbjct: 3077 LDPESGELKTLALLDRERVPVYNLIARATDGGGRFCHANVLLLLEDVNDNPPVFSSNHYT 3136

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3137 ACVYENTATKALL 3149



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       A  ++ + + + NDN P F+
Sbjct: 3282 KFRINPKTGGISVLEALDYETCKRFYLVVEAKDGGTPALSAAATISIDLTNVNDNPPQFS 3341

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A      L   S+ L+I AED DS+ N  +
Sbjct: 3342 QDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 3375



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TA++ +   +A+  V V   D NDN+P   Q+ Y+  + E  P 
Sbjct: 2986 KRPLDREEQDVYFLNITASDGLFVTQAMVEVTVS--DVNDNSPICDQVAYSASLPEDIPS 3043

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3044 NKIILK-------VSAKDADIGSNG 3061



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E   +Y L++T  ++   +      + V++ D NDN P F Q +Y+  +
Sbjct: 780 GQLKVLMPMDREHRDLYLLNITIYDLGKPQKSSWRLLTVNVEDANDNNPVFLQDSYSVSI 839

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V V +LD NDN P F   +Y   
Sbjct: 2762 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSSYETI 2821

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2822 IMEGMPVGTKLAQ-------VRAIDMDWGANG 2846


>gi|321478607|gb|EFX89564.1| hypothetical protein DAPPUDRAFT_233379 [Daphnia pulex]
          Length = 6466

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)

Query: 15   LHPPYGVLLT--KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G+++   +  LDYE T+ YNLS++A NMAG+ A C V VH+ D NDN+P F+Q  
Sbjct: 2865 INPSTGIIVVSPRGGLDYETTKHYNLSISAMNMAGSSARCLVHVHVSDVNDNSPTFSQEL 2924

Query: 73   YTGYVSEAAPIGALVLTN-TSLPLVIRAEDKDSETNALL 110
            Y G +SEAA  G+LV    +S PLV+ A D DS  NALL
Sbjct: 2925 YEGTISEAAAAGSLVFQRLSSAPLVVSARDGDSGVNALL 2963



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            A+ P  GV+   +PLDYE  R + L+V A +  G   +    +V + +LD NDN P FTQ
Sbjct: 4484 AIDPLSGVISLAEPLDYERAREFYLTVQALD-GGVPPLSNHAAVNITVLDSNDNPPIFTQ 4542

Query: 71   LNYTGYVSEAAPIGALVL 88
             +Y+  + E A IG  VL
Sbjct: 4543 ASYSAAIREDAIIGETVL 4560



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 8/90 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G++     LDYE    Y L V AT+ ++GA +   V V + D ND+ P F+   Y   +S
Sbjct: 3401 GLIYIVNRLDYEVRSKYELLVRATDSVSGAHSEVPVSVSVEDANDSPPEFSNNEYNVTLS 3460

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            EA P G +V       L + A D DS  NA
Sbjct: 3461 EATPSGTVV-------LAVSAHDLDSGINA 3483



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + T++PLD E+ R+Y + V+A +  G     ++ V + D NDN P F    Y   +  
Sbjct: 3725 GDIFTRRPLDRESRRVYEIPVSAFDAGGKSGHTTLRVKVGDANDNRPKFLLAEYRANIHA 3784

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               +G   L        ++A D D + NA +
Sbjct: 3785 NYSVGQPFLK-------VQAIDLDVDNNAKI 3808



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L     LD E    Y L V A +     ++ S   V V + D NDN P F+Q+NYT  
Sbjct: 4595 GLLTVSGQLDRELITSYMLEVEARDNGLPSSLASNVLVAVEVTDANDNPPAFSQVNYTAI 4654

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              E  P+G ++L        +   D D  TNA
Sbjct: 4655 AQEDKPLGFVILK-------LLVTDADGPTNA 4679



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +  ++ LD E    Y+L V AT+     A   V V ILD ND+ P  TQ  Y   VSE
Sbjct: 4175 GEVYVERALDREEIGSYSLQVLATD-GFFTATTHVTVDILDDNDHAPVCTQHRYHELVSE 4233

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            A   G  ++        +RA D D   NA +
Sbjct: 4234 ATAPGTFIVR-------VRATDADEGANAKM 4257



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G L T KPLD E   IY L+    +    +  C+  V++ ++D NDN P F Q  YT  V
Sbjct: 4276 GQLKTLKPLDRETRPIYTLTAHVQDRERPQWECTSEVVIALMDVNDNAPSFNQDWYTFAV 4335

Query: 78   SEAAPIGALV 87
             E A +  +V
Sbjct: 4336 PEDAELRTIV 4345



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVS 78
            G +   +PLD+E    Y L+++ T+  G   + + + + +LD ND+ P F++ +Y   VS
Sbjct: 2562 GKVYVAQPLDWEQQSSYLLNISITD--GHNTIYTQLEITVLDVNDHAPVFSEQHYRAEVS 2619

Query: 79   EAAPIGALVLT 89
            E A +GA ++T
Sbjct: 2620 ENAEVGAEIIT 2630



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL---DRNDNTPYFTQ 70
            A+    G++   K LD E    YNL+V+A ++ G  ++ S +V  +   D NDN P F++
Sbjct: 4379 AIDAESGIVTVAKGLDRETVPSYNLTVSAIDL-GTPSLLSTVVVTIVVTDCNDNPPQFSR 4437

Query: 71   LNYTGYVSEAAPIGALVLT--NTSLPLVIRAEDK 102
              Y   V+E++ IGA +L    TSL + + AE K
Sbjct: 4438 KLYAASVAESSAIGAEILNVLATSLDIGVNAEIK 4471



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G L+  + LD E   +++L V A++       +   + + + D NDN P F Q +
Sbjct: 3513 INPEDGTLILVRSLDRETQSLHHLLVMASDQGNPSLSSTAHIWIRVEDVNDNPPQFEQRS 3572

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SE    G  V
Sbjct: 3573 YRCVLSEDGKRGQFV 3587



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTAT----NMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            L P  G+L     LD E    Y + V A     N  G  A   V V ILD ND TP F +
Sbjct: 1751 LDPNTGLLTVSGQLDRERRDFYEVVVIARDGSPNGPGLTAKALVRVRILDVNDVTPRFAR 1810

Query: 71   LNYTGYVSEAAPIGALV 87
                  + E  P+GA+V
Sbjct: 1811 PWQVVKIREDMPVGAVV 1827



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQ 70
            ++P  GVL T  PLD E    + L+V+A +   A    ++   + V +LD NDN P F Q
Sbjct: 1277 INPTSGVLYTALPLDAEMRAEHILTVSAIDQGTAGTRQQSSAKITVQVLDANDNDPIFYQ 1336



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 15   LHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQ 70
            + P  G + T + LDYE   R Y L + A++       ++   V V + D NDN P F +
Sbjct: 1386 VDPFTGAIRTTETLDYETGRRRYLLKIRASDWGTPYRRQSELLVTVVVRDVNDNRPQFQR 1445

Query: 71   LNYTGYVSEAAPIGALVLT 89
            +   G V     IG+ +LT
Sbjct: 1446 VGCVGRVPRTTAIGSELLT 1464



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G + T   LD E    Y L + A++    A   +  +V++ + D NDN P F+Q +Y   
Sbjct: 4057 GWITTLGLLDREQCDRYVLPIIASDNGTPAKLTSTTAVVIEVRDYNDNPPQFSQSHYVAA 4116

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            V+E A  G +V+  T+        D+D E
Sbjct: 4117 VNEEALPGTVVVRLTTT-------DRDRE 4138


>gi|350588390|ref|XP_003357289.2| PREDICTED: protocadherin Fat 3 [Sus scrofa]
          Length = 4301

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/96 (51%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1715 INPYSGVITTRKALDYEHTSSYQLIVQATNMAGMASNVTVNIQIVDENDNAPVFLFSQYS 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1775 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1810



 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2237 GVLKVVSPLDYEIISVYKLTVRASDALTGARAEVTVDLLVNDINDNPPIFDQPTYNTTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N ++
Sbjct: 2297 EASLIGTPVLQ-------VVSTDADSENNKMV 2321



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1412 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1470

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1471 D------VLPDTEI-LQIEATDRDEK 1489



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1504 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIVNVEDANDHSP 1563

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1564 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1600



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2343 GLILTARMLDHELVQHCTLKVRATDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422



 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 421 INPRSGLIVTAQPLNTIKKEVYKLGVT--NKEG-DLKAQVTIGIEDANDHTPEFQQPLYD 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 478 AFVNESVPVGTSVLT-------VSASDKDKGENGYI 506



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  +HP  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3282 KFRIHPKTGGISVSEILDYELCKKFYLVVEAKDGGTPALSAVATVSINLTDVNDNPPRFS 3341

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3342 QDVYSAVISEDALVGDSV-------ILLIAEDADSQPNGQI 3375



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   
Sbjct: 3184 GIVILEQPLDREQQSAYNISVRATDQSPGQALSSLATVTITVLDINDNPPVFERRDYLVT 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3244 VPEDTSPGTQV-------LAVFATSKDIGTNA 3268



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2872 GWISTLKDLDHETDPAFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAHEVYRGN 2931

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 2986 KRPLDREEQDMYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTAVFPEDIPS 3043

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3044 NKIILK-------VSAKDADIGSNG 3061



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 29   DYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
            D E    Y+L V A  + +    +  +V + I D NDN+P FT  NYT  + E  P+G  
Sbjct: 3404 DRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPANYTAVIQENKPVGTS 3463

Query: 87   VL 88
            +L
Sbjct: 3464 IL 3465



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3077 LDPESGELKTLARLDRERIPVYNLVARATDGGGRFCQSDIRLILEDVNDNPPVFSSDHYN 3136

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3137 ACVYENTATKALL 3149



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E   +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 780 GQLKVLMPMDREHRDLYLLNITIYDLGNPQRSSWRLLTINVEDANDNSPVFLQDSYSVTI 839

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T + LD E     ++S+   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2549 GQVITTERLDRENPLEGDISIFLRALDGGGRTTFCTVRVIVVDENDNAPQFMTVEYRASV 2608

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  G LV         ++A D D   NA +
Sbjct: 2609 RADVGRGHLVTQ-------VQAMDPDDGANARI 2634



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++   Y   V A++       ++  +V +
Sbjct: 506 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPETYRFIVRASDWGSPYRHESEVNVTI 565

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            I + NDN+P F ++   G +S   P+G  +
Sbjct: 566 RIGNVNDNSPLFEKVGCQGVISYDFPVGGHI 596



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 989  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1048

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A D+DS  +     ++ DGS
Sbjct: 1049 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1085



 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2762 GTIKLDKRLDHEISPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYETI 2821

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2822 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2846


>gi|431916497|gb|ELK16475.1| Protocadherin Fat 3 [Pteropus alecto]
          Length = 2947

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 510 INPYSGVVTTRKALDYERTSTYQLIVQATNMAGMASNVTVNIQIVDENDNAPVFLFSQYS 569

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 570 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 605



 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 1032 GVLKVVSPLDYEITSVYKLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 1091

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N ++
Sbjct: 1092 EASLIGTPVLQ-------VVSTDADSENNKMV 1116



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 207 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 265

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L I A D+D +
Sbjct: 266 D------VLPDTEI-LQIEATDRDEK 284



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LDYE  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 1138 GLILTARMLDYELVQHCTLKVRATDNGFPSLSSEVLVHIYISDINDNPPVFNQLIYESYV 1197

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1198 SELAPRGHFV-------TCVQASDADS 1217



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 299 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 358

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 359 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 395



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + Y L V A +       AV +V +++ D NDN P F+
Sbjct: 2077 KFRINPKTGGISVSEVLDYELCKKYYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 2136

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 2137 QDVYSAVISEDASVGDSV-------ILLIAEDADSQPNGQI 2170



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ + PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   
Sbjct: 1979 GIIILEHPLDREQQPSYNISVRATDQSPGQALSSLTTVTITVLDINDNPPVFERRDYLVA 2038

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 2039 VPEDTSPGTQV-------LAVFATSKDIGTNA 2063



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++ P  G++  KK LD E    Y+L V A          +V + I D NDN+P FT  NY
Sbjct: 2184 SVDPVLGIVKVKKKLDRERVSGYSLLVQAKK-------ATVNIDISDVNDNSPVFTPANY 2236

Query: 74   TGYVSEAAPIGALVL 88
            T  + E  P+G  +L
Sbjct: 2237 TAVIQENKPVGTSIL 2251



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 1667 GWISTLKDLDHETDPSFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAHEVYQGN 1726

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1727 VKESDPPGEVV 1737



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 1781 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTALFPEDIPS 1838

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        I A+D D  +N 
Sbjct: 1839 NKIILK-------ISAKDADIGSNG 1856



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT-NMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            G++   K LD+E    ++  V AT  M     V +V V I  LD NDN P F   +Y   
Sbjct: 1557 GMIKLDKRLDHEVNPAFHFKVAATIPMDKVDIVFTVDVDIKVLDLNDNKPVFETSSYETI 1616

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 1617 IMEGMPVGTKLTQ-------VRAIDMDWGANG 1641


>gi|395743364|ref|XP_002822394.2| PREDICTED: protocadherin Fat 3 [Pongo abelii]
          Length = 4589

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFGQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAEKLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSTDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDIYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  +V A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFAVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCDQVAYTALLPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D+DS  +     ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQ-------VTAQDEDSGRDGEIQYSIRDGS 1086



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERIPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNTCVYENTATKALL 3150



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847


>gi|426370122|ref|XP_004052021.1| PREDICTED: protocadherin Fat 3-like [Gorilla gorilla gorilla]
          Length = 3470

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 629 INPYSGVITTRKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 688

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 689 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 724



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 1151 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 1210

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 1211 EASLIGTPVLQVVSI-------DADSENNKMV 1235



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 326 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 384

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L   A D+D +
Sbjct: 385 D------VLPDTEI-LQFEATDRDEK 403



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           ++ K  + P  GVL T + LD+EA    I N+ V        + +  V+V++ D ND++P
Sbjct: 418 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVVVNVEDANDHSP 477

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 478 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 514



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V + +         V+VHI   D NDN P F QL Y  YV
Sbjct: 1257 GLILTARMLDHELVQHCTLKVRSIDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 1316

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1317 SELAPRGHFV-------TCVQASDADS 1336



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 2304 VDPVLGLVKVKKKLDRERVSGYSLLVQALDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 2363

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 2364 YTAVIQENKPVGTSIL 2379



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 2196 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 2255

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 2256 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 2289



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 1786 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 1845

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1846 VKESDPPGEVV 1856



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 2103 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 2162

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 2163 SPGTQV-------LAVFATSKDIGTNA 2182



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 1900 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCDQVAYTALLPEDIPS 1957

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 1958 NKIILK-------VSAKDADIGSNG 1975



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 1991 LDPESGELKTLALLDRERIPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 2048

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 2049 YNTCVYENTATKALL 2063



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 1676 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTI 1735

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 1736 IMEGMPVGTKLTQ-------VRAIDMDWGANG 1760


>gi|432847518|ref|XP_004066062.1| PREDICTED: protocadherin Fat 1-like [Oryzias latipes]
          Length = 4558

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 65/96 (67%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++T++ LDYE+   Y L +  TNMAG  +  ++++H+ D NDNTP F Q  + 
Sbjct: 1640 INPNSGVVVTRQTLDYESNSHYKLIIQGTNMAGLASNTTLLIHLKDENDNTPVFIQREFK 1699

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE++P+ ++VLT+ + PLVI A D D + NA L
Sbjct: 1700 GVISESSPVNSVVLTHENTPLVIHASDADCDQNARL 1735



 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 49/72 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++T++ LDYE+   Y L +  TNMAG  +  ++++H+ D NDNTP F Q  + 
Sbjct: 1391 INPNSGVVVTRQTLDYESNSHYKLIIQGTNMAGLASNTTLLIHLKDENDNTPVFIQREFK 1450

Query: 75   GYVSEAAPIGAL 86
            G +SE++P+ ++
Sbjct: 1451 GVISESSPVNSV 1462



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  ++PLD E   +Y L+  A +    +  ++C+V V ILD NDN P F    YT  V
Sbjct: 3109 GVISLERPLDREVQSVYELTAQAIDRGSPRLSSLCTVTVSILDINDNPPVFEHREYTATV 3168

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +GA +L        ++A  +D E NA
Sbjct: 3169 PEDVAVGAQLLR-------VQAASRDKEANA 3192



 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G LL    LD EAT  Y L++T  ++   +   S +  V ILD NDN+P F Q +YT  V
Sbjct: 770 GWLLVYSALDREATDHYTLNITVYDLGVPQKSSSRLLDVKILDANDNSPQFLQDSYTVEV 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE+ PI   ++        + A DKD   N ++
Sbjct: 830 SESTPIQTEIIQ-------VDATDKDQGNNGII 855



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+   +PLD+E    Y L+V AT+ + GA +   V V + D NDNTP F   +Y   +S
Sbjct: 2162 GVIHVIQPLDFETHPAYKLNVRATDSLTGAHSDVFVDVILEDINDNTPVFLSRSYYANIS 2221

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  VL        + A+D D+  N
Sbjct: 2222 EASVIGTSVLQ-------VEAKDSDTGNN 2243



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 13/107 (12%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR 61
            +P   FAI  K  L     +  T + LD E    + L V   ++   + +  VIV++ D 
Sbjct: 1180 NPQGFFAINTKTGL-----ITTTSRRLDREQQDEHILEVRDQDIPVKRNLVRVIVNVDDT 1234

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NDN P+F  + Y+G V E+A IG  VL  T+L       DKD+  NA
Sbjct: 1235 NDNAPWFIGIPYSGRVFESAAIGTAVLQVTAL-------DKDTGHNA 1274



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KPLD E    Y L++TA++ +  AKAV  V V +LD NDN P   QL Y+  V E +P 
Sbjct: 2911 RKPLDREVMDNYLLNITASDGIFTAKAV--VEVKVLDANDNDPVCEQLLYSESVPEDSPA 2968

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G L+L        + A D D  +NA +
Sbjct: 2969 GRLILQ-------VSATDADIRSNAQI 2988



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   +PLDYE +  Y +++ AT+        + +V +++ D NDN P F+Q  Y   +
Sbjct: 3214 GDIFVIEPLDYETSHEYYITIEATDGGSPPLSDMATVNINLTDVNDNRPVFSQDVYAAVI 3273

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
            SE   +G  V       L + AED D
Sbjct: 3274 SEDVELGKTV-------LAVMAEDFD 3292



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G L   + LDYE  ++YNL+  A +        + C + V ++D N+N   P F      
Sbjct: 979  GALRIVQNLDYETKQVYNLTAKAKDKGKPISLSSTCFIEVDVVDVNENLYRPQFRSFVER 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G++ E A +G  V+        + AED+D+  +     ++ DGS
Sbjct: 1039 GFIKEDALVGTSVMK-------VSAEDEDTGRDGEVRYSIRDGS 1075



 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G L   + LD E T  Y L+V A++  +    +  ++ + I D NDN P F+Q N
Sbjct: 3314 IDPLRGELKVARQLDRERTSGYTLTVVASDNGVPPLSSSATINIDISDVNDNPPLFSQAN 3373

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  + E  P G  VL
Sbjct: 3374 YSLIIQENRPKGTSVL 3389



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++ T   ++ +++  + L V   +    KA   VI+ ++D N+N P F Q +Y 
Sbjct: 411 INPDTGLISTTGSINADSSAQFELEVITDD---NKASTKVIIDVVDVNNNAPEFQQTSYK 467

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E  PIG  V+T       ++A D D   N  +
Sbjct: 468 VTVDENVPIGTSVIT-------VKATDLDRGENGYV 496



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +LT + LD E T  +I  +S+ A +  G    C + V + D NDN P F    Y   +
Sbjct: 2474 GEILTLESLDRENTVEKIIPISLMAKDGGGKVGFCIINVIVTDANDNAPKFRAAEYKSTI 2533

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
                P G      TSL L I A D D  +NA ++
Sbjct: 2534 PSDVPRG------TSL-LKIAASDMDEGSNADIE 2560



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+  ++PLD E    Y L + A + A ++    +   + + + D NDN P F   NY  
Sbjct: 873 GVVTVRRPLDRERFPFYTLKIAARDQAVSEPQLVSTVPLKITLEDVNDNPPKFVPPNYRI 932

Query: 76  YVSEAAPIGALVL 88
            V E  PIG +++
Sbjct: 933 KVREDLPIGTVIM 945



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LD+E  + + L     +  G  A+ S   V + + D NDN P FT+  Y   
Sbjct: 2268 GIISLAQVLDHEDIQQHKLRARVVD-GGVPALSSEVTVTIDVTDLNDNAPMFTEFIYNTT 2326

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            VSE AP G  V+        ++A D DS     L+
Sbjct: 2327 VSELAPRGHFVIQ-------VQASDPDSSDTKKLE 2354



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 7    LFAILKP----ALHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVH--IL 59
             F IL P     +    GV+ T   P D EA   Y++ V  T    ++    V+V   + 
Sbjct: 1941 FFRILNPDSRFQISQTSGVVSTTGIPFDREAQDTYDIVVEVTGQDKSEDAAHVLVTLTVE 2000

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P F  L Y   V   A  G LV   T++       DKD  +NA
Sbjct: 2001 DVNDNNPMFVNLPYHALVQMDAEEGQLVRQVTAV-------DKDVGSNA 2042



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD E    Y ++V AT+        S   V V + D NDN P FT   Y G 
Sbjct: 2796 GWVTTLKELDREKMDKYTIAVLATDQGDTIQHISGTTVEVTVADVNDNPPRFTAEIYKGT 2855

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            VSE  P  + V+       ++   D DSE
Sbjct: 2856 VSEDDPPPSGVIA------ILSTTDDDSE 2878



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 28/68 (41%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T +PLD E    +   V A +  G      + + + D NDN P F    YT  V E
Sbjct: 3007 GELKTSRPLDREKQEEHRFKVRAVDGGGRYCEADIHITVEDVNDNPPLFALDPYTITVFE 3066

Query: 80   AAPIGALV 87
                G  V
Sbjct: 3067 NTETGTFV 3074



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T++ LD+EAT  Y L+V A +       A   V + + D NDN P  ++  Y   V
Sbjct: 1087 GVIRTQELLDHEATPHYWLTVYAMDRGVVPLSAFVEVYIQVQDVNDNAPQTSEPVYYPSV 1146

Query: 78   SEAAPIG-ALVLTNTSLPLVIRAEDK 102
            +E +P   +++  N   P VI A DK
Sbjct: 1147 TENSPKDVSIIQINAVDPDVI-ASDK 1171



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 18/96 (18%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-------AVCSVIVHILDRNDNTPYFTQLN 72
            G L  +K LD+E T+ Y L++    +A A+       A  +V + + D NDN P F    
Sbjct: 2686 GALKLQKSLDHEMTKWYQLTL----LAQARFENDDILASVNVNIQVKDVNDNKPIFEANP 2741

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y     E    G  V+        +RA D DS TN+
Sbjct: 2742 YKAVTVENLASGTQVVQ-------VRATDLDSGTNS 2770


>gi|397485377|ref|XP_003813824.1| PREDICTED: protocadherin Fat 3 [Pan paniscus]
          Length = 4557

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYEHTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNQNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTARPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V + +         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSIDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVSINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   IY L++TAT+         V V + D NDN+P   Q+ YT  + E  P  
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM-VEVSVSDVNDNSPVCDQVAYTALLPEDIPSN 3045

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             ++L        + A+D D  +N 
Sbjct: 3046 KIILK-------VSAKDADIGSNG 3062



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LD+E++  IY   V A++       ++  +V + I + NDN+P F ++   G
Sbjct: 526 GVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQG 585

Query: 76  YVSEAAPIGA 85
            +S   P+G 
Sbjct: 586 VISYDFPVGG 595



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERIPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNTCVYENTATKALL 3150



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTV 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847


>gi|301770721|ref|XP_002920779.1| PREDICTED: protocadherin Fat 3-like [Ailuropoda melanoleuca]
          Length = 4557

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYERTSSYQLIVQATNMAGMASNVTVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEITSVYKLTVRASDALTGARAEVTVDMLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N L+
Sbjct: 2298 EASLIGTPVLQ-------VVSTDADSENNKLV 2322



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPGTGVLYTVERLDHEAQDKHILNVMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ +L  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAILQVTAL-------DKDKGENAEL 1601



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCILKVRATDNGFPSLSSEVLVHIYISDINDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V V I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTIKKEVYKLGVT--NKEG-DLKAQVTVGIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  V       L++ A DKD   N  +
Sbjct: 479 AFVNESVPVGTSV-------LMVSASDKDKGENGYI 507



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  
Sbjct: 3390 AVEPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPA 3449

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3450 NYTAVIQENKPVGTSIL 3466



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G +   + LDYE  + + L V A +       AV ++ +++ D NDN P F+Q  
Sbjct: 3286 INPKTGGISVSEVLDYELCKKFFLVVEAKDGGTPALSAVATISINVTDVNDNPPRFSQDT 3345

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3346 YSAVISEDALVGDSV-------ILLVAEDADSQPNGQI 3376



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQPSYNISVQATDQSPGQALSSLATVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVKVTDINDNAPVFAHEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLLPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFLQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E    
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCEQVAYTALFPED--- 3041

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
                +++  + L + A+D D  +N 
Sbjct: 3042 ----ISSNKIILKVSAKDADIGSNG 3062



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERVPMYSLIARATD--GGGRFCQSDIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNACVYENTATKALL 3150



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D DS  +     ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQ-------VAAQDDDSGRDGEIQYSIRDGS 1086


>gi|172045818|sp|Q8TDW7.2|FAT3_HUMAN RecName: Full=Protocadherin Fat 3; Short=hFat3; AltName:
            Full=Cadherin family member 15; AltName: Full=FAT tumor
            suppressor homolog 3; Flags: Precursor
          Length = 4589

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTQKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTARPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V + +         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSIDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCDQVAYTALLPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
              ++L        + A+D D  +N  +
Sbjct: 3045 NKIILK-------VSAKDADIGSNGYI 3064



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LD+E++  IY   V A++       ++  +V + I + NDN+P F ++   G
Sbjct: 526 GVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQG 585

Query: 76  YVSEAAPIGA 85
            +S   P+G 
Sbjct: 586 VISYDFPVGG 595



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERIPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNTCVYENTATKALL 3150


>gi|281337853|gb|EFB13437.1| hypothetical protein PANDA_009560 [Ailuropoda melanoleuca]
          Length = 3367

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 494 INPYSGVITTRKALDYERTSSYQLIVQATNMAGMASNVTVNIQIVDENDNAPVFLFSQYS 553

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 554 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 589



 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 1016 GVLKVVSPLDYEITSVYKLTVRASDALTGARAEVTVDMLVNDVNDNPPIFDQPTYNTTLS 1075

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N L+
Sbjct: 1076 EASLIGTPVLQ-------VVSTDADSENNKLV 1100



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 191 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 249

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L I A D+D +
Sbjct: 250 D------VLPDTEI-LQIEATDRDEK 268



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 283 SMRKFRIDPGTGVLYTVERLDHEAQDKHILNVMVRDQEFPYRRNLARVIVNVEDANDHSP 342

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YFT   Y   V E+A +G+ +L  T+L       DKD   NA L
Sbjct: 343 YFTNPLYEASVFESAALGSAILQVTAL-------DKDKGENAEL 379



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 1122 GLILTARMLDHELVQHCILKVRATDNGFPSLSSEVLVHIYISDINDNPPVFNQLIYESYV 1181

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1182 SELAPRGHFV-------TCVQASDADS 1201



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  
Sbjct: 2168 AVEPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPA 2227

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 2228 NYTAVIQENKPVGTSIL 2244



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G +   + LDYE  + + L V A +       AV ++ +++ D NDN P F+Q  
Sbjct: 2064 INPKTGGISVSEVLDYELCKKFFLVVEAKDGGTPALSAVATISINVTDVNDNPPRFSQDT 2123

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 2124 YSAVISEDALVGDSV-------ILVVAEDADSQPNGQI 2154



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   V E  
Sbjct: 1968 EQPLDREQQPSYNISVQATDQSPGQALSSLATVTITVLDINDNPPVFERRDYLVTVPEDT 2027

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 2028 SPGTQV-------LAVFATSKDIGTNA 2047



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 1651 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVKVTDINDNAPVFAHEVYRGN 1710

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1711 VKESDPPGEVV 1721



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E    
Sbjct: 1765 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCEQVAYTALFPED--- 1819

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
                +++  + L + A+D D  +N 
Sbjct: 1820 ----ISSNKIILKVSAKDADIGSNG 1840



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 1856 LDPESGELKTLALLDRERVPMYSLIARATD--GGGRFCQSDIHLILEDVNDNPPVFSSDH 1913

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 1914 YNACVYENTATKALL 1928


>gi|148886692|ref|NP_001008781.2| protocadherin Fat 3 precursor [Homo sapiens]
          Length = 4557

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTQKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTARPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V + +         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSIDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCDQVAYTALLPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
              ++L        + A+D D  +N  +
Sbjct: 3045 NKIILK-------VSAKDADIGSNGYI 3064



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LD+E++  IY   V A++       ++  +V + I + NDN+P F ++   G
Sbjct: 526 GVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQG 585

Query: 76  YVSEAAPIGA 85
            +S   P+G 
Sbjct: 586 VISYDFPVGG 595



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERIPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNTCVYENTATKALL 3150


>gi|345787797|ref|XP_848507.2| PREDICTED: protocadherin Fat 3 isoform 9 [Canis lupus familiaris]
          Length = 4557

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 VNPYSGVITTRKALDYERTSSYQLIVQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+QLNY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQLNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEIASVYKLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N L+
Sbjct: 2298 EASLIGTPVLQ-------VVSTDADSENNKLV 2322



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L + AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHESVQHCILKIRATDNGFPSLSSEVLVHIYISDINDNPPIFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V V I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTIKKEVYKLGVT--NKEG-DLKAQVTVGIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  V       L++ A DKD   N  +
Sbjct: 479 VFVNESVPVGTNV-------LMVSASDKDKGENGYI 507



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  
Sbjct: 3390 AVEPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPVMSSTATVNIDISDVNDNSPVFTPA 3449

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3450 NYTAVIQENKPVGTSIL 3466



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+Q  
Sbjct: 3286 INPKTGGISVSEGLDYELCKKFYLVVEAKDGGTPALSAVATVSINLTDVNDNPPRFSQDV 3345

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3346 YSAVISEDALVGDSV-------ILLVAEDADSQPNGQI 3376



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQPSYNISVQATDQSPGQALSSLATVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVKVTDINDNAPVFAHEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN P   Q+ YT    E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNNPVCDQVAYTALFPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLLPMDREHTDLYLLNITIYDLGDPQKSSWRLLTINVEDANDNSPVFLQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            I + NDN+P F ++   G +S   P+G  +
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGGHI 597



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D+DS  +     ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQ-------VTAQDEDSGRDGEIQYSIRDGS 1086



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTVKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYETI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  +         +RA D D   N 
Sbjct: 2823 IMEGMPIGTKLTQ-------VRAIDMDWGANG 2847



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERVPMYSLIARATD--GGGRFCQSDIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNTCVYENTATKALL 3150


>gi|332837491|ref|XP_001136982.2| PREDICTED: protocadherin Fat 3 [Pan troglodytes]
          Length = 4557

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYEHTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTARPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V + +         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSIDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVSINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCDQVAYTALLPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LD+E++  IY   V A++       ++  +V + I + NDN+P F ++   G
Sbjct: 526 GVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQG 585

Query: 76  YVSEAAPIGA 85
            +S   P+G 
Sbjct: 586 VISYDFPVGG 595



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERIPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNTCVYENTATKALL 3150



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTV 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847



 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFT 69
           A++   G++     LD E+T  Y+L + A + A +     +V ++ V + D ND +P F 
Sbjct: 878 AINSSTGIVYVADQLDRESTANYSLKIEARDKAESGQQLFSVVTLKVFLDDVNDCSPAFI 937

Query: 70  QLNYTGYVSEAAPIGALV 87
             +Y+  V E  P+G ++
Sbjct: 938 PSSYSVKVLEDLPVGTVI 955


>gi|402894933|ref|XP_003910594.1| PREDICTED: protocadherin Fat 3 [Papio anubis]
          Length = 4573

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1700 INPYSGVITTRKVLDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1759

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1760 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1795



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2222 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2281

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2282 EASLIGTPVLQVVSI-------DADSENNKMV 2306



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1397 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1455

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1456 D------VLPDTEI-LQIEATDRDEK 1474



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1489 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1548

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1549 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1585



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2328 GLILTARMLDHELVQHCTLKVRSTDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2387

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2388 SELAPRGHFV-------TCVQASDADS 2407



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVT--NKEG-DLKTQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 ANVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3267 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3326

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3327 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3360



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2857 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2916

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2917 VKESDPPGEVV 2927



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  ++ + I D NDN+P FT  N
Sbjct: 3375 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPPMSSTATLNIDISDVNDNSPVFTPAN 3434

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3435 YTAVIQENKPVGTSIL 3450



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3174 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3233

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3234 SAGTQV-------LAVFATSKDIGTNA 3253



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            I + NDN+P F ++   G +S   P+G 
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGG 595



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E    
Sbjct: 2971 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCEQVAYTALLPEDIAS 3028

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3029 NKIILK-------VSAKDADIGSNG 3046



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3062 LDPESGELKTLALLDRERVPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 3119

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3120 YNACVYENTATKALL 3134



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2747 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTI 2806

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2807 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2831


>gi|19924085|ref|NP_612553.1| protocadherin Fat 3 precursor [Rattus norvegicus]
 gi|81867062|sp|Q8R508.1|FAT3_RAT RecName: Full=Protocadherin Fat 3; AltName: Full=FAT tumor suppressor
            homolog 3; Flags: Precursor
 gi|19773543|dbj|BAB86869.1| fat3 [Rattus norvegicus]
          Length = 4555

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  +V V ++D NDN P F    Y+
Sbjct: 1715 INPYSGVITTRRALDYEHTSSYQLIIQATNMAGMASNATVSVQVVDENDNPPVFLFSQYS 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI +LV +  + PLVIRA D DS  NALL
Sbjct: 1775 GSLSEAAPINSLVRSLDNSPLVIRATDADSNQNALL 1810



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D N
Sbjct: 1500 IDAISMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDAN 1559

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G++VL  T+L       DKD   NA L
Sbjct: 1560 DHSPYFTNPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 1600



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1412 GTIVIAKPLDAEQRSVYNMSVEVTDGTNV-AVTQVFITVLDNNDNGPEFSQPHYDVTISE 1470

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
              P    +L        I A D+D +
Sbjct: 1471 DVPPDTEILQ-------IEATDRDEK 1489



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2237 GVLKVISPLDYEVMSVYKLTVRASDALTGARAEVTVDLLVDDVNDNPPVFDQPTYNTTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E++ IG  VL        + + D DS  N L+
Sbjct: 2297 ESSLIGTPVLQ-------LVSTDADSGNNNLV 2321



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L VTAT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2343 GLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYISDVNDNPPVFNQLIYESYV 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            GV++ ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   
Sbjct: 3184 GVIVLEQPLDREQQSSYNISVRATDQSPGQSLSSLTSVTITVLDINDNPPVFERRDYLVT 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL+       + A  KD  TNA
Sbjct: 3244 VPEDTSLGTQVLS-------VFATSKDIGTNA 3268



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L V+        A   V + I D ND+TP F +  Y 
Sbjct: 421 INPRSGLIVTAQPLNTVKKEVYKLEVSDKE---GDAKAQVTIGIEDANDHTPEFQETLYE 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 478 TFVNESVPVGTNVLT-------VSASDKDKGENGYI 506



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+ P  G++  KK LD E    Y+L + A + +G  A+ S   V + I D NDN+P FT 
Sbjct: 3389 AVDPILGLVKVKKKLDRERVSGYSLLIQAVD-SGIPAMSSTTTVNIDISDVNDNSPVFTP 3447

Query: 71   LNYTGYVSEAAPIGALVL 88
             NYT  + E  P+G  +L
Sbjct: 3448 ANYTAVIQENKPVGTSIL 3465



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 36/73 (49%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G     +V++ + D NDN P F+  +YT
Sbjct: 3077 LDPESGELKTLALLDRERVPVYNLIARATDGGGRFCSSTVLLLLEDVNDNPPVFSSNHYT 3136

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3137 ACVYENTATKALL 3149



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++  V A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2872 GWISTLKDLDHETDPTFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 2931

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 11/102 (10%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
            K  ++P  G +   + LDYE  + + L V A +  G  A+    +V + + D NDN P F
Sbjct: 3282 KFRINPKTGGISVLEALDYEMCKRFYLVVEAKD-GGTPALSTAATVSIDLTDVNDNPPRF 3340

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Q  Y+  +SE A      L   S+ L+I AED DS+ N  +
Sbjct: 3341 SQDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 3375



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + V++ D NDN+P F Q +Y+  +
Sbjct: 780 GQLKVLMPMDREHTDLYVLNITIYDLGKPQKSSWRLLTVNVEDANDNSPVFLQDSYSVSI 839

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TA++ +   +A+  V V   D NDN+P   Q+ Y+  + E  P 
Sbjct: 2986 KRPLDREEQDIYFLNITASDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYSASLPEDIPS 3043

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3044 NKIILK-------VSAKDADIGSNG 3061



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +     ++ S+    ++  D     +TPYF      
Sbjct: 989  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSISFVEVEVVDVNENLHTPYFPDFAVV 1048

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A D+DS  +     ++ DGS
Sbjct: 1049 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1085



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T + LD E     ++S+   A +  G    C+V V ++D NDN P F  L Y   V
Sbjct: 2549 GQIITTERLDRENPLEGDISIYLRALDGGGRTTFCTVRVIVVDENDNAPQFMTLEYRASV 2608

Query: 78   SEAAPIGALV 87
                  G LV
Sbjct: 2609 RADVGRGHLV 2618



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V V +LD NDN P F   +Y   
Sbjct: 2762 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSSYETI 2821

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2822 IMEGMPVGTKLAQ-------VRAIDTDWGANG 2846


>gi|355752536|gb|EHH56656.1| hypothetical protein EGM_06114 [Macaca fascicularis]
          Length = 4589

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKVLDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSTDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVT--NKEG-DLKTQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 ANVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  ++ + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPPMSSTATLNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSTVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCEQVAYTALLPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            I + NDN+P F ++   G +S   P+G 
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGG 595



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERVPVYSLMAKATD--GGGRFCQANIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   + E     AL+
Sbjct: 3136 YNACIYENTATKALL 3150



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFAVDVDIKVLDLNDNKPVFETSSYDTI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847


>gi|410972449|ref|XP_003992672.1| PREDICTED: protocadherin Fat 3 isoform 2 [Felis catus]
          Length = 4589

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEITSVYRLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N L+
Sbjct: 2298 EASLIGTPVLQ-------VVSTDADSGNNKLV 2322



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRATDNGFPSLSSEVLVHIYISDINDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  
Sbjct: 3390 AVEPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPA 3449

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3450 NYTAVIQENKPVGTSIL 3466



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLDVT--NKEG-DLKAQVTIGIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  V       L++ A DKD   N  +
Sbjct: 479 AFVNESVPMGTSV-------LMVSASDKDKGENGYI 507



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIIILEQPLDREQQPSYNISVQATDQSPGQALSSLATVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTSPGTQV-------LAVFATSKDIGTNA 3269



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+Q  
Sbjct: 3286 INPKTGGISVSEVLDYELCKKFYLVVEAKDGGTPALSAVTTVSINLTDVNDNPPRFSQDV 3345

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  +SE A +G  V       +++ AED DS  N  +
Sbjct: 3346 YSAVISEDALVGDSV-------ILLIAEDADSPPNGQI 3376



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2873 GWISTLKDLDHETDPAFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAHEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   IY L++TAT+        +V V + D NDN+P   Q+ YT    E  P  
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQ-ATVEVTVSDVNDNSPVCDQVAYTALFPEDIPSN 3045

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             ++L        +RA+D D  +N 
Sbjct: 3046 KIILK-------VRAKDADIGSNG 3062



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERVPVYNLIARATD--GGGRFCQSDIHLILEDVNDNPPVFSSEH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNACVYENTATKALL 3150



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLLPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFLQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            I + NDN+P F ++   G +S   P+G  +
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGGHI 597



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D+DS  +     ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQ-------VAAQDEDSGRDGEIQYSIRDGS 1086



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYETI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847


>gi|410972447|ref|XP_003992671.1| PREDICTED: protocadherin Fat 3 isoform 1 [Felis catus]
          Length = 4557

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEITSVYRLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N L+
Sbjct: 2298 EASLIGTPVLQ-------VVSTDADSGNNKLV 2322



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRATDNGFPSLSSEVLVHIYISDINDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  
Sbjct: 3390 AVEPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPA 3449

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3450 NYTAVIQENKPVGTSIL 3466



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLDVT--NKEG-DLKAQVTIGIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  V       L++ A DKD   N  +
Sbjct: 479 AFVNESVPMGTSV-------LMVSASDKDKGENGYI 507



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +A+ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIIILEQPLDREQQPSYNISVQATDQSPGQALSSLATVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTSPGTQV-------LAVFATSKDIGTNA 3269



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+Q  
Sbjct: 3286 INPKTGGISVSEVLDYELCKKFYLVVEAKDGGTPALSAVTTVSINLTDVNDNPPRFSQDV 3345

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  +SE A +G  V       +++ AED DS  N  +
Sbjct: 3346 YSAVISEDALVGDSV-------ILLIAEDADSPPNGQI 3376



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   IY L++TAT+        +V V + D NDN+P   Q+ YT    E  P  
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQ-ATVEVTVSDVNDNSPVCDQVAYTALFPEDIPSN 3045

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             ++L        +RA+D D  +N 
Sbjct: 3046 KIILK-------VRAKDADIGSNG 3062



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2873 GWISTLKDLDHETDPAFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAHEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERVPVYNLIARATD--GGGRFCQSDIHLILEDVNDNPPVFSSEH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNACVYENTATKALL 3150



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLLPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFLQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            I + NDN+P F ++   G +S   P+G  +
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGGHI 597



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D+DS  +     ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQ-------VAAQDEDSGRDGEIQYSIRDGS 1086



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYETI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847


>gi|355566954|gb|EHH23333.1| hypothetical protein EGK_06782, partial [Macaca mulatta]
          Length = 3492

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 619 INPYSGVITTRKVLDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 678

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 679 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 714



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 1141 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 1200

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 1201 EASLIGTPVLQVVSI-------DADSENNKMV 1225



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 316 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 374

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L I A D+D +
Sbjct: 375 D------VLPDTEI-LQIEATDRDEK 393



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 408 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 467

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 468 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 504



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 1247 GLILTARMLDHELVQHCTLKVRSTDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 1306

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1307 SELAPRGHFV-------TCVQASDADS 1326



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 1776 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 1835

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1836 VKESDPPGEVV 1846



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  ++ + I D NDN+P FT  N
Sbjct: 2294 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPPMSSTATLNIDISDVNDNSPVFTPAN 2353

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 2354 YTAVIQENKPVGTSIL 2369



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 2186 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 2245

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 2246 QDVYSTVISEDALVGDSV-------ILLIAEDVDSQPNGQI 2279



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 2093 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 2152

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 2153 SPGTQV-------LAVFATSKDIGTNA 2172



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 1890 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCEQVAYTALLPEDIPS 1947

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 1948 NKIILK-------VSAKDADIGSNG 1965



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 1981 LDPESGELKTLALLDRERVPVYSLMAKATD--GGGRFCQANIHLILEDVNDNPPVFSSDH 2038

Query: 73   YTGYVSEAAPIGALV 87
            Y   + E     AL+
Sbjct: 2039 YNACIYENTATKALL 2053



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 1666 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFAVDVDIKVLDLNDNKPVFETSSYDTI 1725

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 1726 IMEGMPVGTKLTQ-------VRAIDMDWGANG 1750


>gi|332207901|ref|XP_003253033.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 3-like [Nomascus
            leucogenys]
          Length = 4557

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTIKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN+P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSTDSGFPSLSSEVLVHIYISDVNDNSPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEAYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGDISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVWATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCDQVAYTALLPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NEIILK-------VSAKDADIGSNG 3062



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFVVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            I + NDN+P F ++   G +S   P+G 
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGG 595



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
            +P   FAI +K  L     +  T + LD E    + L VT T+   +  ++   V+VH+L
Sbjct: 1191 NPQNFFAINIKTGL-----ITTTSRKLDREQQAEHFLEVTVTDGGPSPKQSTIWVVVHVL 1245

Query: 60   DRNDNTPYFTQLNY 73
            D NDN P F +  Y
Sbjct: 1246 DENDNKPQFPEKVY 1259



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847


>gi|297268957|ref|XP_001084587.2| PREDICTED: protocadherin Fat 3 [Macaca mulatta]
          Length = 4557

 Score = 91.3 bits (225), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKVLDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   S+       D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSTDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVT--NKEG-DLKTQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 ANVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  ++ + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPPMSSTATLNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSTVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V + D NDN+P   Q+ YT  + E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCEQVAYTALLPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            I + NDN+P F ++   G +S   P+G 
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGG 595



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3078 LDPESGELKTLALLDRERVPVYSLMAKATD--GGGRFCQANIHLILEDVNDNPPVFSSDH 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   + E     AL+
Sbjct: 3136 YNACIYENTATKALL 3150



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFAVDVDIKVLDLNDNKPVFETSSYDTI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847


>gi|426229938|ref|XP_004009040.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2 [Ovis aries]
          Length = 4343

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 61/91 (67%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V+I+D NDN P F++L + G +SE
Sbjct: 1706 GLISTQKKLDHEKISSYQLKIRGSNMAGAFTDIMVLVYIIDENDNAPVFSKLTFVGQISE 1765

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + PLVIRA D D E N+LL
Sbjct: 1766 AAPLNSMIMDENNNPLVIRASDSDKEANSLL 1796



 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            A+HP  G L   K LD+E T  Y+L + AT+ +G  A+     + + ++D NDN P F Q
Sbjct: 3368 AIHPKKGELQVAKALDWEQTSSYSLKLRATD-SGQPALYEDTDIAIQVVDVNDNPPRFFQ 3426

Query: 71   LNYTGYVSEAAPIGALVL 88
            LNY+  V E APIG+ VL
Sbjct: 3427 LNYSTSVQENAPIGSKVL 3444



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 8   FAILKP-----ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P     ++ P  G++ T KP+DYE   RIY   V A++       +   SV + +
Sbjct: 491 YSIARPNAVPFSIDPYLGIISTSKPMDYELMNRIYTFRVQASDWGSPFRQEKEVSVSLRL 550

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            + NDN P F ++N TG + E  P+G  V+T +++
Sbjct: 551 KNLNDNKPMFEEVNCTGSIHEDWPVGKSVMTVSAI 585



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            + ++K LD E T  Y L +TA++    +A   V + +LD NDN+P  +QL Y G VSE  
Sbjct: 2964 IFSRKTLDREHTAKYLLRITASD-GKFQASVPVEIFVLDINDNSPQCSQLLYAGEVSEDV 3022

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P G  +L        + A D DS+TNA +
Sbjct: 3023 PPGHFILK-------VSATDLDSDTNAQI 3044



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2219 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2278

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2279 EGLPAQTPVIQ-------LLASDRDSGQN 2300



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 766 GLLTVAAPLDYEATSFYVLNVTVYDLGTPQKSSWKLLTVNVEDWNDNAPRFPPGGYQVTI 825

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  V+        ++A+D DSE N 
Sbjct: 826 SEDTEVGTTVVE-------LKAKDVDSEDNG 849



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFT 69
            ++P  G L  +K LD+E    YNLS+ A++       + +C V V +LD N+N   P+F 
Sbjct: 970  VNPMTGALSLEKELDFERRAGYNLSLWASDSGKPLARRTLCHVEVIVLDVNENLHPPHFA 1029

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               + G V E +P G  V       +V+ A D D+  +  L
Sbjct: 1030 SFVHQGQVQENSPSGTSV-------MVVAAHDDDTGLDGEL 1063



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2325 GEMSTVQELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2384

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2385 SELATCGHLVLK-------VQALDPDSRDTSRLE 2411



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2744 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTYLGSLVSVNIQVKDVNDNRPIFEADPYKAV 2803

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2804 LTENMPVGTSVIQVTA 2819



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E    Y+L   AT+  G      VI+H+ D NDN P F      
Sbjct: 3058 LDPHTGELTTLTALDREKKDAYSLVAKATDGGGQSCQADVILHVEDVNDNAPRF------ 3111

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S +A     V  NT++     V+ A D D  TNA
Sbjct: 3112 -FPSHSA---VAVFDNTTVKTPVAVVLARDPDQGTNA 3144



 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E +  + LS+  +    +    + +++V+I D N++ P F Q  Y+  V
Sbjct: 3269 GILYVNKSLDFETSPKHFLSIECSRKGSSSLSDMTTIVVNITDVNEHQPRFPQHLYSTRV 3328

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 3329 LENAIVGDVVLT-------VSATDEDGPVNSAI 3354



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +        + V    M   +    V +H+ DRN + P FTQL
Sbjct: 1495 LDPSSGVLVTVGKLDLGSGPSQHTLTVMVRDQEMPIKRNFVWVSIHVEDRNLHRPRFTQL 1554

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   VS+    GA +L        +RA D D   NA
Sbjct: 1555 HYETRVSDTTVPGAELLQ-------VRAMDGDRGANA 1584



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  +IY+  V A +      + S   V V I D N
Sbjct: 2844 ELFAIDSET-----GWITTLQELDCETNQIYHFYVVAYDHGRTIQLSSQVLVEVSITDEN 2898

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G  V T  +L   I  +++
Sbjct: 2899 DNAPRFASEDYRGSVVENSEPGEPVATLKTLDADISEQNR 2938



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2529 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2588

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2589 SIQSNVSKDSPV 2600



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + +LD NDN P  ++  +   V
Sbjct: 1083 GMIQTLAPLDREFASCYWLTVLAVDRGSIPLSSVTEVYIEVLDVNDNPPQMSRPVFYPSV 1142

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+   VL        + A D DS +   L
Sbjct: 1143 REDAPLHTSVLQ-------LDAWDPDSSSKGKL 1168



 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 19/109 (17%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSV-TATNMAGAKAVCSVIVHILDR 61
           +LKP+       L+   G++ T K +D+     Y L + T+  +A      +V++ I+D 
Sbjct: 392 VLKPSSESAAFKLNARTGLITTTKLMDFHDQAQYQLHIRTSLGLAST----TVVIDIMDC 447

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           N++ P F + +Y G   E  P G  VLT       + A D+D   N  +
Sbjct: 448 NNHAPVFNRSSYDGTFDENIPPGTSVLT-------VSATDQDHGENGYI 489



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            LHP  G+L T + LD E    + L VT  +      ++   V+V I+D NDN P F+ 
Sbjct: 1183 LHPLTGLLATARQLDRENKDEHILEVTVLDNGEPSLRSTSRVVVRIVDVNDNPPVFSH 1240


>gi|390354063|ref|XP_003728252.1| PREDICTED: protocadherin Fat 1-like [Strongylocentrotus purpuratus]
          Length = 1207

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 59/91 (64%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T  PLDYE   +YNL+V ATNM G +    +++H+ D NDN P F+ + Y G +SE
Sbjct: 525 GIITTTMPLDYEEVTMYNLTVQATNMVGLRTNTCLVIHVQDANDNAPTFSSVEYVGSISE 584

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +A + ++VL   S PLVI AED DS  NA L
Sbjct: 585 SASLKSVVLDENSRPLVISAEDADSGHNAHL 615



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++P  GV+     +DYE  ++Y L V A++ + GA A+ +V + I D ND  P F Q  Y
Sbjct: 1039 INPLTGVINLIGAVDYETRQLYGLEVLASDTLTGASAMVTVDITISDVNDVMPSFNQKIY 1098

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               +SEA  +GA VL        I   D+DS  N+
Sbjct: 1099 QAVLSEAVSVGATVLQ-------ISTTDQDSPKNS 1126



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATR--IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +   + LD+E+ R  + N+ V   N    +    V+V+++D ND+ P F+  +Y G V
Sbjct: 320 GYIYLNESLDHESQRQHVLNVEVKDYNYGTHRTYARVVVNVMDSNDHMPEFSAESYEGKV 379

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E A +G  V+        + A D+D  +NA L
Sbjct: 380 YETAAVGTRVVD-------VYAFDRDQGSNAEL 405



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 8   FAILKPA----LHPPYGVLL-TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILD 60
           F IL P+    + P  G++  T  P D E    Y++ V A +      V  +IV+  ILD
Sbjct: 822 FTILNPSPMFSIKPTSGIVRNTGIPFDREEQDSYHIVVEARDRRTPPRVAHIIVNVEILD 881

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            NDN P F    Y   V   A +G +V   T++
Sbjct: 882 INDNPPIFIHHQYNAIVQVDASVGEVVRQVTAI 914


>gi|345307957|ref|XP_001508966.2| PREDICTED: protocadherin Fat 2 [Ornithorhynchus anatinus]
          Length = 4144

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 60/91 (65%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LDYE    Y L +   NMAGA A  +V+++++D ND+ P FTQ  + GY+SE
Sbjct: 1705 GLISTRKSLDYEKITSYQLKIRGINMAGAFADAAVLIYVIDENDHAPAFTQPTFVGYISE 1764

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP  +LV+     PLV+RA D D + NALL
Sbjct: 1765 AAPEHSLVMGPEHSPLVVRATDADQDANALL 1795



 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 11/98 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQ 70
            A+HP  G +   +PLD+E T  Y+L+V AT+  G  A+    +V +H+ D NDN P F Q
Sbjct: 3365 AIHPKRGEIHVARPLDWEETPSYHLTVRATD-NGQPALWRDGAVSIHVADVNDNPPRFFQ 3423

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            LNY+  V E+AP+G  VL  T         D+DS  N 
Sbjct: 3424 LNYSIVVQESAPLGTSVLELT-------VSDRDSPENG 3454



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KKPLD E    Y L VT ++    +A   V V +LD NDN+P   Q+ YTG V+E  P 
Sbjct: 2963 SKKPLDREDIEKYFLRVTVSD-GKFQASTQVEVFVLDINDNSPKCRQILYTGRVAEDVPP 3021

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G  +L        + A D D+  NA
Sbjct: 3022 GHFILQ-------VSAVDADAGVNA 3039



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 8/90 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYEA   +  +V AT+ A G+ +  +V V + D NDN P F+Q  YT  VS
Sbjct: 2218 GVLSVIGPLDYEAKAEHVFTVRATDTALGSFSEATVHVEVEDINDNPPVFSQTVYTASVS 2277

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P    V+        + A D+DS  N 
Sbjct: 2278 EGLPAHTPVIR-------LLAADRDSGRNG 2300



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI + +     G + T+K LD EA   Y   V A++      + S   V V + D N
Sbjct: 2841 ELFAIDRES-----GWITTRKELDCEARETYQFHVVASDHGRTIQLSSQALVEVTVSDEN 2895

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P FT   Y G V E +  G L+ T  +L   I  +++
Sbjct: 2896 DNAPRFTSEVYRGSVIENSEPGQLIATLRTLDADISEQNR 2935



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 9/77 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNT--PYFTQLN 72
            G +  ++ L++E   +YNL+V A++  G K     + C V V +LD N+N   P+F    
Sbjct: 974  GAVTLERELNFETRALYNLTVEASD--GGKPLSRSSTCYVEVSVLDVNENLHPPHFASFV 1031

Query: 73   YTGYVSEAAPIGALVLT 89
              G V E +P G LV+T
Sbjct: 1032 SRGSVQENSPRGTLVMT 1048



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T KPLD+     Y L++     +  +   +V V I+D N++ P F+Q +Y G   E
Sbjct: 410 GLITTTKPLDFHERSHYKLAI---GTSPGQTSTTVFVDIVDCNNHAPMFSQSSYHGTFDE 466

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               G  VLT       + A D DS  N  +
Sbjct: 467 NISPGTSVLT-------VTATDNDSGENGFV 490



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K +D+E TR Y L V A        + S++   + + D NDN P F    Y  +
Sbjct: 2742 GALKVNKSVDHETTRWYQLDVMAHCSHQETELVSLVSVNIQVKDVNDNQPVFEADPYKAF 2801

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  V+        + A D+D+ ++ 
Sbjct: 2802 LMENMPVGTTVIQ-------VTANDQDTGSDG 2826



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L     LD+E +  + LS+  +    +    V +V++++ D ND+ P FTQ  Y+  +
Sbjct: 3266 GSLYVNGSLDFEVSHEHYLSIECSRKGASSLSDVMTVVINVTDVNDHEPKFTQELYSTDI 3325

Query: 78   SEAAPIGALVLTNTSL 93
             E A +G  +LT T++
Sbjct: 3326 REDAAVGETILTLTAV 3341



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E T  Y L+V A ++      AV  V + + D NDN P  ++  +   V
Sbjct: 1082 GTIRTVGPLDRERTPHYWLTVLAVDLGSVPLSAVTEVFIEVTDVNDNPPQMSRPVFYPSV 1141

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+      NTS+ L + A D+DS +   L
Sbjct: 1142 REDAPL------NTSV-LQLDAWDQDSSSKGKL 1167



 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD+EA+  Y L+VT  ++      +   + V++ D NDN P F    Y   +
Sbjct: 765 GLLRVVAPLDHEASSFYVLNVTVHDLGIPQKSSWKQLAVNVGDANDNVPRFPPGGYRVRI 824

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G  V+        +RA+D D E N 
Sbjct: 825 PEDTQPGTTVMR-------LRADDADKEDNG 848



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E    Y+L   AT+  G      VI+ + D NDN P FT     
Sbjct: 3055 LDPYTGELFTLTALDREEKDRYHLVAKATDGGGRSCQADVILGVDDVNDNAPRFT----- 3109

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
              +S  +    +V  NT++     V+ A D D   NA
Sbjct: 3110 --ISHCS---VVVFDNTTVKTPVAVVSARDPDEGPNA 3141



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T K +DYE   R+Y+  V A++       +   S+ + + + NDN+P F 
Sbjct: 503 SIDPYSGIISTSKLMDYELMQRLYHFQVWASDWGSPFRQETEVSISLMLNNLNDNSPMFE 562

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           + N +G +     +G  V T +++
Sbjct: 563 KANCSGTIPRDLQVGEQVATMSAI 586



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 14   ALHPPYGVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            A+ P  G+L T + LD E  A  I  ++V      G ++   V++ +LD NDN P F+ 
Sbjct: 1181 AIDPITGLLSTSRQLDRENKAEHILEVAVMDNGEPGLQSTSRVVIQVLDVNDNHPAFSH 1239



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E +  R+  + + A +  G  A C+V + + D NDN P F    YT  V
Sbjct: 2530 GRITTLQELDRENSTERVIAIKIMARDGGGKVAFCTVKIILTDVNDNPPQFKASEYTVSV 2589

Query: 78   SEAAPIGALVL 88
                  GA V+
Sbjct: 2590 QSNVGKGAPVI 2600



 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 30/69 (43%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  +KPLDY A   Y L V A +           V +L RN + P F  L Y 
Sbjct: 2113 IDPYLGDISLRKPLDYRALNKYLLKVIARDGGDPPLQTEGEVLVLLRNKSNPLFQSLRYR 2172

Query: 75   GYVSEAAPI 83
              V E  P+
Sbjct: 2173 VKVPENIPL 2181


>gi|172046767|sp|Q8BNA6.2|FAT3_MOUSE RecName: Full=Protocadherin Fat 3; AltName: Full=FAT tumor suppressor
            homolog 3; Flags: Precursor
          Length = 4555

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  ++ V I+D NDN P F    Y+
Sbjct: 1715 INPYSGVITTRRALDYEHTSSYQLIIQATNMAGMASNATISVQIVDENDNPPVFLFSQYS 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1775 GSLSEAAPINSIVRSLDNSPLVIRATDADSNQNALL 1810



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1504 SMRKFRMDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1563

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G++VL  T+L       DKD   NA L
Sbjct: 1564 YFTNPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 1600



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2237 GVLKVISPLDYEVTSVYKLTVRASDALTGARAEVTVDLLVDDINDNPPVFDQPTYNTTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E++ IG  VL        + + D DS  N L+
Sbjct: 2297 ESSLIGTPVLQ-------LVSTDADSGNNKLV 2321



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1412 GTIVIAKPLDAEQRSVYNMSVEVTDGTNI-AVTQVFIKVLDNNDNGPEFSQPHYDVTISE 1470

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1471 D------VLPDTEI-LQIEATDRDEK 1489



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L VTAT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2343 GLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYISDVNDNPPVFNQLIYESYV 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++ ++PLD E    YN+SV AT+ +  +++    SV + +LD NDN P F + +Y   
Sbjct: 3184 GVIVLEQPLDREQQSSYNISVRATDQSPGQSLSSLASVTITVLDINDNPPVFERRDYLVT 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL+       + A  KD  TNA
Sbjct: 3244 VPEDTSLGTQVLS-------VFATSKDIGTNA 3268



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+ P  G++  KK LD E    Y+L + A + +G  A+ S   V + I D NDN+P FT 
Sbjct: 3389 AVDPILGLVKVKKKLDRERVSGYSLLIQAVD-SGIPAMSSTTTVNIDISDVNDNSPVFTP 3447

Query: 71   LNYTGYVSEAAPIGALVL 88
             NYT  + E  P+G  +L
Sbjct: 3448 ANYTAVIQENKPVGTSIL 3465



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L V+        A   V + I D ND+TP F +  Y 
Sbjct: 421 INPRSGLIVTAQPLNTVKKEVYKLEVSDKE---GDAKAQVTIGIEDANDHTPEFQEALYE 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+  +G  VLT       + A DKD   N  +
Sbjct: 478 TFVNESVRVGTNVLT-------VSASDKDKGENGYI 506



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 36/73 (49%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G     SV++ + D NDN P F+  +YT
Sbjct: 3077 LDPESGELKTLAVLDRERVPVYNLIARATDGGGRFCSSSVLLLLEDVNDNPPVFSSNHYT 3136

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3137 ACVYENTATKALL 3149



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 11/102 (10%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
            K +++P  G +   + LDYE  R + L V A +  G  A+    +V + + D NDN P F
Sbjct: 3282 KFSINPKTGGISVLEALDYETCRRFYLVVEAKD-GGTPALSTAATVSIDLTDVNDNPPRF 3340

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Q  Y+  +SE A      L   S+ L+I AED DS+ N  +
Sbjct: 3341 SQDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 3375



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++  V A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2872 GWISTLKDLDHETDPAFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 2931

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + V++ D NDN P F Q +Y+  +
Sbjct: 780 GQLKVLMPMDREHTDLYVLNITIYDLGKPQKSSWRLLTVNVEDANDNNPVFLQDSYSVSI 839

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TA++ +   +A+  V V   D NDN+P   Q+ Y+  + E  P 
Sbjct: 2986 KRPLDREEQDIYFLNITASDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYSASLPEDIPS 3043

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3044 NKIILK-------VSAKDADIGSNG 3061



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V V +LD NDN P F    Y   
Sbjct: 2762 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSTYETI 2821

Query: 77   VSEAAPIG 84
            + E  P+G
Sbjct: 2822 IMEGMPVG 2829



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 989  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1048

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A D+DS  +     ++ DGS
Sbjct: 1049 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1085


>gi|124249105|ref|NP_001074283.1| protocadherin Fat 3 precursor [Mus musculus]
          Length = 4551

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  ++ V I+D NDN P F    Y+
Sbjct: 1711 INPYSGVITTRRALDYEHTSSYQLIIQATNMAGMASNATISVQIVDENDNPPVFLFSQYS 1770

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1771 GSLSEAAPINSIVRSLDNSPLVIRATDADSNQNALL 1806



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1500 SMRKFRMDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1559

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G++VL  T+L       DKD   NA L
Sbjct: 1560 YFTNPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 1596



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2233 GVLKVISPLDYEVTSVYKLTVRASDALTGARAEVTVDLLVDDINDNPPVFDQPTYNTTLS 2292

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E++ IG  VL        + + D DS  N L+
Sbjct: 2293 ESSLIGTPVLQ-------LVSTDADSGNNKLV 2317



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1408 GTIVIAKPLDAEQRSVYNMSVEVTDGTNI-AVTQVFIKVLDNNDNGPEFSQPHYDVTISE 1466

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1467 D------VLPDTEI-LQIEATDRDEK 1485



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L VTAT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2339 GLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYISDVNDNPPVFNQLIYESYV 2398

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2399 SELAPRGHFV-------TCVQASDADS 2418



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++ ++PLD E    YN+SV AT+ +  +++    SV + +LD NDN P F + +Y   
Sbjct: 3180 GVIVLEQPLDREQQSSYNISVRATDQSPGQSLSSLASVTITVLDINDNPPVFERRDYLVT 3239

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL+       + A  KD  TNA
Sbjct: 3240 VPEDTSLGTQVLS-------VFATSKDIGTNA 3264



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+ P  G++  KK LD E    Y+L + A + +G  A+ S   V + I D NDN+P FT 
Sbjct: 3385 AVDPILGLVKVKKKLDRERVSGYSLLIQAVD-SGIPAMSSTTTVNIDISDVNDNSPVFTP 3443

Query: 71   LNYTGYVSEAAPIGALVL 88
             NYT  + E  P+G  +L
Sbjct: 3444 ANYTAVIQENKPVGTSIL 3461



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L V+        A   V + I D ND+TP F +  Y 
Sbjct: 417 INPRSGLIVTAQPLNTVKKEVYKLEVSDKE---GDAKAQVTIGIEDANDHTPEFQEALYE 473

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+  +G  VLT       + A DKD   N  +
Sbjct: 474 TFVNESVRVGTNVLT-------VSASDKDKGENGYI 502



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 36/73 (49%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G     SV++ + D NDN P F+  +YT
Sbjct: 3073 LDPESGELKTLAVLDRERVPVYNLIARATDGGGRFCSSSVLLLLEDVNDNPPVFSSNHYT 3132

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3133 ACVYENTATKALL 3145



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 11/102 (10%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
            K +++P  G +   + LDYE  R + L V A +  G  A+    +V + + D NDN P F
Sbjct: 3278 KFSINPKTGGISVLEALDYETCRRFYLVVEAKD-GGTPALSTAATVSIDLTDVNDNPPRF 3336

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Q  Y+  +SE A      L   S+ L+I AED DS+ N  +
Sbjct: 3337 SQDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 3371



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++  V A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2868 GWISTLKDLDHETDPAFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 2927

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2928 VKESDPPGEVV 2938



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + V++ D NDN P F Q +Y+  +
Sbjct: 776 GQLKVLMPMDREHTDLYVLNITIYDLGKPQKSSWRLLTVNVEDANDNNPVFLQDSYSVSI 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 836 LESSSIGTEIIQ-------VEARDKDLGSNG 859



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TA++ +   +A+  V V   D NDN+P   Q+ Y+  + E  P 
Sbjct: 2982 KRPLDREEQDIYFLNITASDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYSASLPEDIPS 3039

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3040 NKIILK-------VSAKDADIGSNG 3057



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V V +LD NDN P F    Y   
Sbjct: 2758 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSTYETI 2817

Query: 77   VSEAAPIG 84
            + E  P+G
Sbjct: 2818 IMEGMPVG 2825



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 985  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1044

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A D+DS  +     ++ DGS
Sbjct: 1045 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1081


>gi|148693090|gb|EDL25037.1| mCG142133 [Mus musculus]
          Length = 4539

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  ++ V I+D NDN P F    Y+
Sbjct: 1699 INPYSGVITTRRALDYEHTSSYQLIIQATNMAGMASNATISVQIVDENDNPPVFLFSQYS 1758

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1759 GSLSEAAPINSIVRSLDNSPLVIRATDADSNQNALL 1794



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1488 SMRKFRMDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1547

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G++VL  T+L       DKD   NA L
Sbjct: 1548 YFTNPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 1584



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2221 GVLKVISPLDYEVTSVYKLTVRASDALTGARAEVTVDLLVDDINDNPPVFDQPTYNTTLS 2280

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E++ IG  VL        + + D DS  N L+
Sbjct: 2281 ESSLIGTPVLQ-------LVSTDADSGNNKLV 2305



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1396 GTIVIAKPLDAEQRSVYNMSVEVTDGTNI-AVTQVFIKVLDNNDNGPEFSQPHYDVTISE 1454

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1455 D------VLPDTEI-LQIEATDRDEK 1473



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L VTAT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2327 GLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYISDVNDNPPVFNQLIYESYV 2386

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2387 SELAPRGHFV-------TCVQASDADS 2406



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++ ++PLD E    YN+SV AT+ +  +++    SV + +LD NDN P F + +Y   
Sbjct: 3168 GVIVLEQPLDREQQSSYNISVRATDQSPGQSLSSLASVTITVLDINDNPPVFERRDYLVT 3227

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL+       + A  KD  TNA
Sbjct: 3228 VPEDTSLGTQVLS-------VFATSKDIGTNA 3252



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+ P  G++  KK LD E    Y+L + A + +G  A+ S   V + I D NDN+P FT 
Sbjct: 3373 AVDPILGLVKVKKKLDRERVSGYSLLIQAVD-SGIPAMSSTTTVNIDISDVNDNSPVFTP 3431

Query: 71   LNYTGYVSEAAPIGALVL 88
             NYT  + E  P+G  +L
Sbjct: 3432 ANYTAVIQENKPVGTSIL 3449



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L V+        A   V + I D ND+TP F +  Y 
Sbjct: 405 INPRSGLIVTAQPLNTVKKEVYKLEVSDKE---GDAKAQVTIGIEDANDHTPEFQEALYE 461

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+  +G  VLT       + A DKD   N  +
Sbjct: 462 TFVNESVRVGTNVLT-------VSASDKDKGENGYI 490



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 36/73 (49%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G     SV++ + D NDN P F+  +YT
Sbjct: 3061 LDPESGELKTLAVLDRERVPVYNLIARATDGGGRFCSSSVLLLLEDVNDNPPVFSSNHYT 3120

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3121 ACVYENTATKALL 3133



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 11/102 (10%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
            K +++P  G +   + LDYE  R + L V A +  G  A+    +V + + D NDN P F
Sbjct: 3266 KFSINPKTGGISVLEALDYETCRRFYLVVEAKD-GGTPALSTAATVSIDLTDVNDNPPRF 3324

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Q  Y+  +SE A      L   S+ L+I AED DS+ N  +
Sbjct: 3325 SQDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 3359



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++  V A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2856 GWISTLKDLDHETDPAFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 2915

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2916 VKESDPPGEVV 2926



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + V++ D NDN P F Q +Y+  +
Sbjct: 764 GQLKVLMPMDREHTDLYVLNITIYDLGKPQKSSWRLLTVNVEDANDNNPVFLQDSYSVSI 823

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 824 LESSSIGTEIIQ-------VEARDKDLGSNG 847



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TA++ +   +A+  V V   D NDN+P   Q+ Y+  + E  P 
Sbjct: 2970 KRPLDREEQDIYFLNITASDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYSASLPEDIPS 3027

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3028 NKIILK-------VSAKDADIGSNG 3045



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V V +LD NDN P F    Y   
Sbjct: 2746 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSTYETI 2805

Query: 77   VSEAAPIG 84
            + E  P+G
Sbjct: 2806 IMEGMPVG 2813



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 973  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1032

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A D+DS  +     ++ DGS
Sbjct: 1033 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1069


>gi|395814685|ref|XP_003780875.1| PREDICTED: protocadherin Fat 3 isoform 2 [Otolemur garnettii]
          Length = 4589

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVVTTRKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V    + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRNLDNSPLVIRATDADSNRNALL 1811



 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYEAT +Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEATSVYKLTIRASDSLTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------VVSTDADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V++ I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVT--NKEG-DLRAQVVIGIEDANDHTPEFQQAQYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  +LT       + A DKD   N  +
Sbjct: 479 TYVNESVPVGTSILT-------VSAFDKDKGENGYI 507



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            ++  ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D N
Sbjct: 1501 IESSSMRKFRIDPSTGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIVNVEDAN 1560

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1561 DHSPYFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHESVQHCTLKVRSTDSGFPSLSSEVLVHIHISDINDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIVILEQPLDREQQPSYNISVQATDQSPGQSLSSLAIVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTSPGTQV-------LAVFATSKDIGTNA 3269



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G++  KK LD E    Y+L V A + +G  A+ S     + I D NDN+P FT  
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVD-SGIPAMSSTATLNIDISDVNDNSPVFTPA 3449

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3450 NYTAVIQENKPVGTSIL 3466



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K +++P  G +   + LDYE  + + L V A +       AV +V V + D NDN P F+
Sbjct: 3283 KFSINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVSVTLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDIYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2873 GWISTLKDLDHETDPEFTFSVLASDLGEAFSLSSTTVVSVKVTDINDNAPVFAHEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREQTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 2987 KRPLDREEQDMYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTALFPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+EAT  ++    AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHEATPAFHFKAAATVPLDKIDIVFTVDVDIKVLDLNDNKPVFETSSYETI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA+D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAQDVDWGANG 2847



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3078 LDPESGELKTLALLDRERVPVYNLIARATDGGGRFCQSDIRLILEDVNDNPPMFSSDHYN 3137

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3138 ACVYENTATKALL 3150



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDPGRDGEIQYSIRDGS 1086


>gi|344287782|ref|XP_003415631.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 3-like [Loxodonta
            africana]
          Length = 4556

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE +  Y L + ATNMAG  +  +V + ++D NDN P F    Y+
Sbjct: 1715 INPYSGVITTRKALDYERSSSYQLIIQATNMAGMASNATVNIQVVDENDNAPVFLFSQYS 1774

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1775 GSLSEAAPVNSIVRSADNSPLVIRATDADSSRNALL 1810



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLD+E T +Y L+V A++ + GA+A  +V + + D NDN P F +  Y   +S
Sbjct: 2237 GVLKVASPLDFEITPVYKLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDEPTYNTTLS 2296

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N ++
Sbjct: 2297 EASLIGTPVLQ-------VVSTDADSENNKMV 2321



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1412 GTIVIAKPLDAEQRSFYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1470

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1471 D------VLPDTEI-LQIEATDRDEK 1489



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  G+L T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1504 SMRKFRIDPSTGILYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1563

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1564 YFTSPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1600



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2343 GLILTARMLDHELVQHCTLKVRATDSGFPSLSSEVLVHIYISDINDNPPIFNQLIYESYV 2402

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2403 SELAPRGHFVTR-------VQASDADS 2422



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 421 INPRSGLIVTAQPLNTIKKEVYKLGVT--NREG-DLKAQVTIGIEDANDHTPEFQQPLYE 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 478 AFVNESVPVGTSVLT-------VSASDKDKGENGYI 506



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN P FT  
Sbjct: 3389 AVEPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNGPVFTPA 3448

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3449 NYTAVIQENKPVGTSIL 3465



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    Y++SV AT+ +  +A+ S   V + +LD NDN P F + +Y   
Sbjct: 3184 GIIILEQPLDRELQSSYSISVQATDQSPGQALSSFTTVTITVLDINDNPPVFERRDYLVT 3243

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  VLT       + A  KD  TNA
Sbjct: 3244 VPEDTSPGTQVLT-------VFATSKDIGTNA 3268



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +  +    AV +V +++ D NDN P F+
Sbjct: 3282 KFRINPKTGGISVSEVLDYELCKKFYLVVEAKDGGIPALSAVATVSINLTDVNDNPPKFS 3341

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3342 QDIYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3375



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   + V + D NDN P F    Y G 
Sbjct: 2872 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALISVRVTDINDNAPVFAHEVYRGN 2931

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 2986 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTALFPEDIPS 3043

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3044 NKIILK-------VSAKDADIGSNG 3061



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN P F Q +Y+  +
Sbjct: 780 GQLKVLMPMDREQTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNNPIFLQDSYSVNI 839

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   VH++  D NDN P F+  +
Sbjct: 3077 LDPESGELKTLALLDRERVPVYSLIARATD--GGGRFCQSDVHLILEDVNDNPPVFSSDH 3134

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3135 YNACVYENTATKALL 3149



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +LT + LD E     ++S+   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2549 GQVLTTERLDRENPLEGDISIFLRALDGGGRTTFCTVRVIVVDENDNAPQFMTVEYRASV 2608

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  G LV         ++A D D   N+ +
Sbjct: 2609 RADVGRGHLVTQ-------VQAMDPDDGANSRI 2634



 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 989  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1048

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A D+DS  +     ++ DGS
Sbjct: 1049 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1085



 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2762 GTIKLDKRLDHEISPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFDTSSYETI 2821

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2822 IMEGMPVGTKLTQ-------VRALDMDWGANG 2846


>gi|395814683|ref|XP_003780874.1| PREDICTED: protocadherin Fat 3 isoform 1 [Otolemur garnettii]
          Length = 4557

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVVTTRKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V    + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRNLDNSPLVIRATDADSNRNALL 1811



 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYEAT +Y L++ A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEATSVYKLTIRASDSLTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------VVSTDADSENNKMV 2322



 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V++ I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVT--NKEG-DLRAQVVIGIEDANDHTPEFQQAQYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  +LT       + A DKD   N  +
Sbjct: 479 TYVNESVPVGTSILT-------VSAFDKDKGENGYI 507



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            ++  ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D N
Sbjct: 1501 IESSSMRKFRIDPSTGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIVNVEDAN 1560

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1561 DHSPYFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHESVQHCTLKVRSTDSGFPSLSSEVLVHIHISDINDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIVILEQPLDREQQPSYNISVQATDQSPGQSLSSLAIVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTSPGTQV-------LAVFATSKDIGTNA 3269



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G++  KK LD E    Y+L V A + +G  A+ S     + I D NDN+P FT  
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVD-SGIPAMSSTATLNIDISDVNDNSPVFTPA 3449

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3450 NYTAVIQENKPVGTSIL 3466



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K +++P  G +   + LDYE  + + L V A +       AV +V V + D NDN P F+
Sbjct: 3283 KFSINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVSVTLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDIYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2873 GWISTLKDLDHETDPEFTFSVLASDLGEAFSLSSTTVVSVKVTDINDNAPVFAHEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREQTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 2987 KRPLDREEQDMYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTALFPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+EAT  ++    AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHEATPAFHFKAAATVPLDKIDIVFTVDVDIKVLDLNDNKPVFETSSYETI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA+D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAQDVDWGANG 2847



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3078 LDPESGELKTLALLDRERVPVYNLIARATDGGGRFCQSDIRLILEDVNDNPPMFSSDHYN 3137

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3138 ACVYENTATKALL 3150



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDPGRDGEIQYSIRDGS 1086


>gi|351713328|gb|EHB16247.1| Protocadherin Fat 3 [Heterocephalus glaber]
          Length = 3464

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 63/96 (65%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 561 INPYSGVITTRRTLDYEHTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 620

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 621 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNQNALL 656



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 350 SMRKFRIDPTTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 409

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 410 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 446



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  KPLD E   +YN++V  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 258 GTIVIAKPLDAEQRSVYNMTVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 316

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSE 105
                  VL +T + L I A D+D +
Sbjct: 317 D------VLPDTEI-LQIEATDRDEK 335



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T ++ L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 1083 GVLKVVSPLDYEVTSVHKLTVRASDALTGARAEVTVDLLVNDVNDNPPVFNQPTYNTTLS 1142

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N ++
Sbjct: 1143 EASLIGTPVLQ-------VVSTDIDSGNNKMV 1167



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 1189 GLMLTARMLDHELVQHCTLKVRATDNGFPSLSSEVLVHIHISDINDNPPVFNQLIYESYV 1248

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 1249 SELAPRGHFV-------TCVQASDADS 1268



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       A  +V +++ D NDN P F+
Sbjct: 2120 KFRINPKTGGISVSEALDYELCKRFYLVVEAKDGGTPALSAAATVSINLTDVNDNPPKFS 2179

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 2180 QDIYSAVISEDALVGDSV-------ILLIAEDIDSQPNGQI 2213



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    ++ SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 1710 GWISTLKDLDHETDPAFSFSVVASDLGEAFSLSSMALVSVRVTDINDNAPVFAHEVYRGN 1769

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 1770 VKESDPPGEVV 1780



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV A++ +  +++ SV    + +LD NDN P F + +Y   V E  
Sbjct: 2027 EQPLDREQQSSYNISVRASDQSPGQSLSSVATITITVLDINDNPPVFERRDYLVTVPEDT 2086

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V       L + A  KD  TNA
Sbjct: 2087 SPGTQV-------LAVFATSKDIGTNA 2106



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 29   DYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
            D E    Y+L V A  + +    +  +V + I D NDN+P FT  NYT  + E  P+G  
Sbjct: 2242 DRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPANYTAVIQENKPVGTS 2301

Query: 87   VL 88
            +L
Sbjct: 2302 IL 2303



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   ++ YT    E  P 
Sbjct: 1824 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDEVAYTASFPEDIPS 1881

Query: 84   GALVL 88
              ++L
Sbjct: 1882 NKIIL 1886



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E    YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 1915 LDPESGELKTLALLDRERVPAYNLISRATD--GGGRFCQSDIHLILEDVNDNPPVFSSDH 1972

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 1973 YNACVYENTATKALL 1987


>gi|432892794|ref|XP_004075840.1| PREDICTED: protocadherin Fat 3-like [Oryzias latipes]
          Length = 4611

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+  +K LDYE T  Y L V A NMAG  +  ++++ ILD NDN P F Q +Y G +SE
Sbjct: 1740 GVITNQKALDYETTESYTLIVQAVNMAGMASNATLLIQILDENDNPPVFLQHHYYGSISE 1799

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+ ++VL    LPLVIRA D D   NALL
Sbjct: 1800 VAPVKSVVLNLHGLPLVIRATDPDHNQNALL 1830



 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G ++  +PLDYE  R Y L+V A +       AV +V +++ D NDN P F++  
Sbjct: 3314 VHPHSGAIIVAQPLDYETCRDYFLTVEARDGGTPPLSAVTTVNINLTDVNDNAPMFSRDL 3373

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            YT +VSE A IG  V+        + AED DS  N 
Sbjct: 3374 YTAFVSEDAFIGEFVVQ-------LVAEDSDSHLNG 3402



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LDYE T  Y+L+V AT+ + GA A   + V I D NDN P F +++Y+  +S
Sbjct: 2257 GVISVIHCLDYEVTSSYHLTVRATDYLTGAHAEVDLGVFIQDINDNPPIFQKMSYSVSLS 2316

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E A IG  VL        + A D+DSE N ++
Sbjct: 2317 ETAMIGTPVLQ-------VIASDQDSEKNNII 2341



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  KPLD E    YNL+V AT+     A   V + +LD NDN P F+Q  Y   +SE
Sbjct: 1432 GTILIAKPLDAEQRSFYNLTVLATD-GTHTAYTQVHILVLDNNDNDPIFSQQAYEVTISE 1490

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
              P    VL        I A D+D E N L
Sbjct: 1491 DTPTDTEVLQ-------IVASDRD-EHNEL 1512



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++LT + LD+E    Y   V AT+  G  A+ S   V V + D NDN P F QL Y  Y
Sbjct: 2363 GLILTARMLDHELAHNYYFVVRATD-NGYPALSSEVTVTVTLNDMNDNAPVFNQLLYEAY 2421

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            VSE AP G  +         ++A D DS
Sbjct: 2422 VSELAPRGHFI-------TCVQASDADS 2442



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G + T + LD+EA    I  + V   +    K +  V++ + D ND+ P FT   
Sbjct: 1530 IHPTLGTIFTTQRLDHEACAQHILTVLVKDQDFPYRKNLARVLIEVEDINDHVPIFTSPL 1589

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y G V E+A  G+ V+  T+L       DKD   NA L
Sbjct: 1590 YEGSVYESAAKGSAVVQVTAL-------DKDKGKNAEL 1620



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDN--TPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +     ++ SV    + ++D N+N   PYFT    T
Sbjct: 1006 GAIRLTKELDYETQQFYNLTVKAKDKGRPVSLLSVTFVELEVIDVNENLYAPYFTHFALT 1065

Query: 75   GYVSEAAPIGALVL 88
            G V E A IG  +L
Sbjct: 1066 GVVKENARIGTTLL 1079



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+ T + L   +  ++NL V   +   +     V++ I D NDNTP F+Q +Y  +V+E
Sbjct: 442 GVISTTRWLTKVSNNLFNLEVVEIS---SDLRVKVLITIEDANDNTPTFSQSSYEVFVNE 498

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + P+G  VLT       + A D+D   N  +
Sbjct: 499 SVPVGTNVLT-------VSATDEDRGENGYI 522



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            +  K PLD E    Y +++TAT+         V V ++D NDN+P   Q+ YT  + E  
Sbjct: 3012 MYVKGPLDREKRNFYLINITATDGLFVSQT-KVEVTVMDANDNSPDCDQVMYTASIPEDL 3070

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P+ +L+LT       + A D D   NA +
Sbjct: 3071 PVHSLLLT-------VGATDADVGVNAQI 3092



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT-NMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            GV+   K LD+EA + +   VTAT   A   ++ S  V V++ D NDN P F   +Y   
Sbjct: 2787 GVIKLDKALDHEAIKEFYFKVTATVKQAKLDSMTSANVKVNVFDINDNRPAFETNSYVAT 2846

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  V+        ++A D DS  N 
Sbjct: 2847 VMEGTAVGTKVIR-------VQASDPDSGANG 2871



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            + P  GV+   KPLD E    ++L++ A + +G   + S   V + + D NDN P F+  
Sbjct: 3419 IDPINGVIKVNKPLDRETIPSFSLTIRALD-SGVPPMSSTALVNIDVSDVNDNPPTFSSA 3477

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N T  + E  PIG  +L  + +       D+DS  N 
Sbjct: 3478 NLTAVIQENKPIGTTILQLSVI-------DRDSSRNG 3507



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A R   L V A ++ G  + C+V + +LD NDN+P F    Y   +
Sbjct: 2569 GYICTVEKLDREDPANRDILLIVAAQDLGGRVSYCTVQITLLDDNDNSPSFVATEYQASL 2628

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  G LV         ++A D D  +NA
Sbjct: 2629 KHDVTKGFLVTQ-------LQAHDLDDGSNA 2652



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T   LD+E+ T I+   V A++       ++  +V +H+ + NDN P F ++   G
Sbjct: 541 GVISTSSLLDFESSTEIFVFLVRASDWGSPYRRESEVNVTIHLENVNDNQPLFEKVACQG 600

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            +S   P+G ++ T +++ +
Sbjct: 601 VISADFPVGEVITTVSAIDI 620



 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +  +  LD+E +  Y  +V A +        +  +V V + D NDN P FT+ +Y G 
Sbjct: 2901 GWIFIRTDLDHETSPFYTFTVVALDHGEVLSLSSTTTVTVTVSDVNDNAPVFTETHYIGT 2960

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E+ P G +V        V+   D+DS
Sbjct: 2961 VRESDPPGEVV-------AVLNTRDEDS 2981



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 31/66 (46%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++ P  G + +   LD+E T  Y L V A +  G      + + + D NDN P FT   Y
Sbjct: 3105 SIDPDTGEVKSLVTLDHEKTPSYRLVVQAMDGGGQWCSAEIQLVVTDVNDNPPIFTMPQY 3164

Query: 74   TGYVSE 79
            T  V E
Sbjct: 3165 TANVYE 3170



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GV++ +  LD E    Y ++V A++        ++ +V + +LD NDN P F   +    
Sbjct: 3213 GVVILEHTLDREVQSTYQITVCASDQGSPLPLYSLVNVTITVLDINDNHPIFEHRDQLTT 3272

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL        + A  KD  TNA
Sbjct: 3273 VPEDVRVGTEVLR-------VYAASKDIGTNA 3297


>gi|403301747|ref|XP_003941544.1| PREDICTED: protocadherin Fat 3 isoform 1 [Saimiri boliviensis
            boliviensis]
          Length = 4559

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE    Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYERMSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSVYKLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        I + D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------IVSTDADSENNKIV 2322



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSVYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSTDSGFPALSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLVVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 TFVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A +  +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  +HP  G +     LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKIHPKTGGISVSDVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS  N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSPPNGQI 3376



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFVQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G+ V       L + A  KD  TNA
Sbjct: 3250 SPGSQV-------LAVFATSKDIGTNA 3269



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   IY L++TAT+         V V + D NDN+P   Q+ YT  + E  P  
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQTM-VEVTVSDVNDNSPVCDQVAYTALLPEDIPSN 3045

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             L+L        + A+D D  +N 
Sbjct: 3046 KLILK-------VSAKDADIGSNG 3062



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+   
Sbjct: 3078 LDPERGELKTLALLDRERVPVYSLIAKATD--GGGRFCQSTIHVILEDVNDNPPVFSSDR 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNACVYENTATKALL 3150



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            I + NDN+P F ++   G +S   P+G 
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGG 595



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  +         +RA D D   N 
Sbjct: 2823 IMEGMPIGTKLTQ-------VRAIDMDWGANG 2847



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V   +        + +   V V  ++ N +TPYF      
Sbjct: 990  GTIRLSKELDYEKQQFYNLTVRVKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFADFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086


>gi|410909630|ref|XP_003968293.1| PREDICTED: protocadherin Fat 3-like [Takifugu rubripes]
          Length = 4673

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 60/91 (65%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+K LDYE T  Y+L V A NMAG  +  ++I+ + D NDN P F QL+Y G +SE
Sbjct: 1782 GVMTTRKSLDYEKTPSYSLVVQAINMAGMASNATLIIQLKDENDNPPVFQQLHYRGSISE 1841

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AA + ++VL +   PLVI+A D D   NALL
Sbjct: 1842 AAAVNSVVLESDDSPLVIKATDADRNENALL 1872



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFT 69
            K  + P  G +L  +PLDYE  R Y L+V A +       A+ +V ++I D NDN P F+
Sbjct: 3352 KFHIQPRTGAILVSQPLDYETCRDYFLTVEARDGGTPPLSAITTVNINITDVNDNAPVFS 3411

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               YT  VSE A +G  V+        + AED DS+ N 
Sbjct: 3412 CQLYTAVVSEDAAMGDSVIQ-------VVAEDVDSKPNG 3443



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G + T + LD+EA  ++ L++T  +      K +  V+V + D ND+ P FT+  
Sbjct: 1572 IHPTLGTIYTLQSLDHEACALHILTITVKDQEFPYRKNMARVLVEVKDVNDHVPIFTRSV 1631

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y G V E++ +G+ V+  T+L       DKD   NA L
Sbjct: 1632 YEGSVYESSAVGSAVVQVTAL-------DKDKGRNADL 1662



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  KPLD E    YNL+V AT+  G K A   V V +LD NDN P F+Q  Y   VS
Sbjct: 1474 GTIIIAKPLDAEQQPSYNLTVQATD--GTKTAHTQVHVTVLDNNDNAPVFSQPTYDVTVS 1531

Query: 79   EAAPIGALVL 88
            E  P  A V+
Sbjct: 1532 EDIPPDAEVV 1541



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLDYE+   YNL+V AT+ + GA+A   V V + D NDN P F ++ Y   +S
Sbjct: 2299 GVITVVHPLDYESAARYNLTVRATDYLTGARAEVDVDVAVKDVNDNQPVFQKMAYRVVLS 2358

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E A IG   L        + A DKDS+ N ++
Sbjct: 2359 ETAMIGTPALH-------VSATDKDSDKNNII 2383



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G +   K LDYE  + YNLSV A +        +V SV + ++D N+N   PYF+Q    
Sbjct: 1050 GAIRLMKELDYETQQFYNLSVKAKDRGKPVSLLSVTSVEIEVVDVNENLYAPYFSQFALK 1109

Query: 75   GYVSEAAPIGALVLTNTS 92
              V E A IG  +L  T+
Sbjct: 1110 ATVKENARIGTTLLQVTA 1127



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT-NMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            G++   KPLD+E  + Y   VTAT       +V SV V +  LD NDN P F    Y   
Sbjct: 2828 GLIKLNKPLDHEVIKEYYFKVTATIQQTKIDSVTSVDVEVKVLDLNDNKPEFVTDAYEAT 2887

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P+   +L        ++A D DS  N 
Sbjct: 2888 VMEGVPLSTKILQ-------VQALDADSGING 2912



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQL 71
            ++ P  G++   K LD E+   Y+L+++A +        + +V+I   D NDN P+F   
Sbjct: 3459 SIDPTSGIIRVNKELDRESVPSYSLAISACDTGIPPLSSTTVVNIDLSDINDNAPFFALD 3518

Query: 72   NYTGYVSEAAPIGALVL 88
            ++T  + E  PIG  +L
Sbjct: 3519 DFTVVIQENKPIGTSIL 3535



 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            +G + T + LD E  + R  +L+V+A +  G  +  +V + +LD NDN P+F    Y   
Sbjct: 2609 FGQITTVEKLDREDPSNRDVSLTVSARDAGGYVSYATVQMTLLDENDNAPHFCATEYRAS 2668

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V  +   G LV         ++A D D   NA +
Sbjct: 2669 VKSSVAEGFLVTQ-------VQASDPDDGPNARI 2695



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  + Y+  V AT+       +  SV V + D NDN P F QL Y  YV
Sbjct: 2404 GLILTARLLDHELLQRYDFVVVATDNGFPPLSSEVSVTVVVSDVNDNPPVFNQLLYEAYV 2463

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +E AP G  V         ++A D DS
Sbjct: 2464 NELAPRGHFV-------TCVQASDADS 2483



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+ T +     +  ++NL V   N   ++    V V + D NDNTP F Q +Y   V+E
Sbjct: 487 GVISTTQWFTQVSQSVFNLEVQELN---SELKVKVKVVVQDANDNTPTFHQSSYEILVNE 543

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + P+G  VLT       + A+D D+  N  +
Sbjct: 544 SVPVGTSVLT-------VSAQDGDTGENGYI 567



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L+ ++ LD E    Y ++V AT+      + S   + V ILD NDN P F   +    
Sbjct: 3254 GILVLERFLDREVQSTYRVTVRATDWGAPTRLSSFANLTVTILDINDNPPVFEHRDQLVT 3313

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL        + A  KD  TNA
Sbjct: 3314 VKEDVGLGTEVLR-------VHAASKDIGTNA 3338



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G + T   LD E T  Y L   AT+  G      V + + D NDN P FTQ  ++
Sbjct: 3147 IDPDSGEIKTSVILDRELTDSYRLLAQATDGGGRWCRAEVRIKVTDVNDNPPMFTQSQFS 3206

Query: 75   GYVSE 79
              + E
Sbjct: 3207 TSIYE 3211



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR---NDNTPYFTQLNYTGY 76
            G + T K LD+E+   Y  +V A+++    +  S     +     NDN P F + NY G 
Sbjct: 2942 GWISTLKDLDHESASSYVFTVVASDLGDTVSFSSTTTATVVVTDVNDNPPRFLEQNYFGS 3001

Query: 77   VSEAAPIGALV 87
            V E++P G +V
Sbjct: 3002 VQESSPPGEVV 3012



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTP 66
           A+HP  GV+L    LD      Y+L + A +         G  +   +IVH+   N++ P
Sbjct: 268 AVHPTSGVVLLSGKLDVSERHQYDLEILAVDRGMKLYGNNGVSSTAKLIVHVERVNEHAP 327

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             + +N + +    +PI A          V+  ED D   N  +D
Sbjct: 328 IISVVNSSPWSHAKSPIYA----------VVTVEDPDEGLNGEVD 362


>gi|403301749|ref|XP_003941545.1| PREDICTED: protocadherin Fat 3 isoform 2 [Saimiri boliviensis
            boliviensis]
          Length = 4591

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T+K LDYE    Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRKALDYERMSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAPI ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811



 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T +Y L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSVYKLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        I + D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------IVSTDADSENNKIV 2322



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSVYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V +T+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSTDSGFPALSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLVVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 TFVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++  KK LD E    Y+L V A  + +    +  +V + I D NDN+P FT  N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            YT  + E  P+G  +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  +HP  G +     LDYE  + + L V A +       AV +V +++ D NDN P F+
Sbjct: 3283 KFKIHPKTGGISVSDVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS  N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSPPNGQI 3376



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F Q  Y G 
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFVQEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   V E  
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G+ V       L + A  KD  TNA
Sbjct: 3250 SPGSQV-------LAVFATSKDIGTNA 3269



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   IY L++TAT+         V V + D NDN+P   Q+ YT  + E  P  
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQTM-VEVTVSDVNDNSPVCDQVAYTALLPEDIPSN 3045

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             L+L        + A+D D  +N 
Sbjct: 3046 KLILK-------VSAKDADIGSNG 3062



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +Y+L   AT+  G    C   +H++  D NDN P F+   
Sbjct: 3078 LDPERGELKTLALLDRERVPVYSLIAKATD--GGGRFCQSTIHVILEDVNDNPPVFSSDR 3135

Query: 73   YTGYVSEAAPIGALV 87
            Y   V E     AL+
Sbjct: 3136 YNACVYENTATKALL 3150



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            I + NDN+P F ++   G +S   P+G 
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGG 595



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GTIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  +         +RA D D   N 
Sbjct: 2823 IMEGMPIGTKLTQ-------VRAIDMDWGANG 2847



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V   +        + +   V V  ++ N +TPYF      
Sbjct: 990  GTIRLSKELDYEKQQFYNLTVRVKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFADFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086


>gi|348565657|ref|XP_003468619.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 3-like [Cavia
            porcellus]
          Length = 4527

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++ LDYE T  Y L + ATNMAG  +  +V + ++D NDN P F    Y+
Sbjct: 1687 INPYSGVITTRRALDYEHTSSYQLIIQATNMAGMASNATVNIQVVDENDNAPVFLFSQYS 1746

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1747 GSLSEAAPVNSIVRSLDNSPLVIRATDADSNQNALL 1782



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T IY L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2209 GVLKVVSPLDYEVTSIYKLTVRASDTLTGARAEVTVDLLVNDINDNPPIFDQHTYNTTLS 2268

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DS  N ++
Sbjct: 2269 EASLIGTPVLQ-------VVSSDIDSGNNKMV 2293



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D ND++P
Sbjct: 1476 SMRKFRIDPTTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1535

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1536 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1572



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN++V  T+     AV  V + +LD NDN P F+Q NY   +SE
Sbjct: 1384 GTIVIAKPLDAEQRSVYNMTVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1442

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1443 D------VLPDTEI-LQIEATDRDEK 1461



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      VI+ I D ND+TP F Q  Y 
Sbjct: 422 INPRTGLIVTAQPLNTIKKEVYKLEVT--NKEG-NIKAQVIIGIDDANDHTPEFQQSLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  +L+       + A DKD   N  +
Sbjct: 479 TFVNESVPVGTSILS-------VSASDKDKGENGYI 507



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2315 GLILTARMLDHELVQHCTLKVRATDNGFPSLSNEVLVHIHISDINDNPPVFNQLIYESYV 2374

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2375 SELAPRGHFV-------TCVQASDADS 2394



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A +  +    +  +V + I D NDN+P FT  
Sbjct: 3361 AVDPVLGLVKVKKKLDRERVSGYSLLVQAVDGGIPAMSSTATVNIDISDVNDNSPVFTPA 3420

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3421 NYTAVIQENKPVGTSIL 3437



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +++ S   +++ +LD NDN P F + +Y   
Sbjct: 3156 GIIILEQPLDREQQSSYNISVRATDQSPERSLSSIATIMITVLDINDNPPVFERRDYLVT 3215

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3216 VPEDTSPGTQV-------LAVFATSKDIGTNA 3240



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE+ + + L V A +       A  +V +++ D NDN P F+
Sbjct: 3254 KFRINPKTGGISVSEALDYESCKRFYLVVEAKDGGTPALSAAATVSINLTDVNDNPPKFS 3313

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3314 QDVYSTVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3347



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHI 58
            SHP ++       +    G + T K LD+E    ++ SV A+++  A ++ S   V V +
Sbjct: 2828 SHPEKVMEAFN--IDSNTGWISTLKDLDHETDPAFSFSVVASDLGEAFSLSSMALVSVKV 2885

Query: 59   LDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
             D NDN P F    Y G V E+ P G +V
Sbjct: 2886 TDINDNAPVFAHEVYRGNVKESDPPGEVV 2914



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + ++I D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINIEDANDNSPIFLQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 2958 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTASFPEDIPS 3015

Query: 84   GALVL 88
              ++L
Sbjct: 3016 NKIIL 3020



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3049 LDPESGELKTLALLDRERVPVYNLIARATDGGGRFCQSDIRLILEDVNDNPPVFSSDHYN 3108

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3109 ACVYENTATKALL 3121



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD+E + +++  V AT   +         + + +LD NDN P F   +Y   
Sbjct: 2734 GTIKLDKRLDHEISPVFHFKVAATIPLDKVDIVFTVDIDIKVLDLNDNKPVFETSSYETI 2793

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2794 IMEGMPVGTKLTQ-------VRATDMDWGANG 2818



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 961  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1020

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D+DS  +     ++ DGS
Sbjct: 1021 GSVKENSRIGTSVLQ-------VTAQDEDSGRDGEIQYSIRDGS 1057


>gi|348543886|ref|XP_003459413.1| PREDICTED: protocadherin Fat 3-like [Oreochromis niloticus]
          Length = 4593

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 60/91 (65%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+K LDYE T  Y L V A NMAG  +  ++++ ++D NDN P F +L+Y G +SE
Sbjct: 1725 GVITTQKSLDYETTTSYTLIVQAINMAGMASNATLLIQVVDDNDNPPVFQELHYHGSISE 1784

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAPI ++VL     PLVI+A D D   NALL
Sbjct: 1785 AAPINSVVLNLDGSPLVIKATDADRNQNALL 1815



 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G +L  +PLDYE  R Y L+V A +       A+ +V + + D NDN P F+   
Sbjct: 3299 IHPLTGAILVAQPLDYETCRDYFLTVEARDGGTPSLSAITTVNIDLTDVNDNPPMFSHSV 3358

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            YT  VSE A +G  V+        ++A+D DS+ N 
Sbjct: 3359 YTAVVSEDATVGEPVIQ-------LKADDVDSQLNG 3387



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   KPLDYE  + Y   VTAT       + +   V V +LD NDN P F   +Y   
Sbjct: 2772 GVIKLDKPLDYEVIKGYYFKVTATAQQAKLDSVSCVEVEVKVLDLNDNKPAFEANSYDTT 2831

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  ++        ++A D DS  N 
Sbjct: 2832 IMEGMPVGTRIIQ-------VQARDPDSGANG 2856



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G + T + LD+EA   + L+V   +      K +  V++ + D ND+ P FT   
Sbjct: 1515 IHPTQGTIYTTQRLDHEACARHILTVIVKDQEFPYRKDLVRVLIEVEDVNDHVPNFTSAL 1574

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y G V E+A +G+ V+  T+L       DKD   NA L
Sbjct: 1575 YEGSVYESAAVGSAVVQVTAL-------DKDKGENAEL 1605



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YN++V AT+   + A   + + ++D NDN P F Q  Y   VSE
Sbjct: 1417 GTIIIAKPLDAEQCSFYNMTVQATD-GTSTAHTQIHITVMDNNDNAPIFFQPTYDVIVSE 1475

Query: 80   AAPIGALVLTNTSLPLVIRAEDKD 103
              P    V+        ++A D+D
Sbjct: 1476 DTPPDTKVVQ-------VQASDRD 1492



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  + Y+  V AT+       +  SV V + D NDN P F QL Y  YV
Sbjct: 2348 GLILTARMLDHELLQKYDFIVRATDNGFPPLSSEVSVTVMLNDINDNPPVFNQLLYEAYV 2407

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +E A  G  +         ++A D DS
Sbjct: 2408 NELATRGHFI-------TCVQASDADS 2427



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            +  K PLD E   +YN++VTA++        +V V ++D NDN+P   ++ YT Y+ E  
Sbjct: 2997 MYVKGPLDREECNLYNINVTASDGLFVSQ-ATVEVTVVDTNDNSPICDKVMYTAYIPEDL 3055

Query: 82   PIGALVL 88
            P  +++L
Sbjct: 3056 PANSVLL 3062



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+     LD+EAT  Y+L+V AT+ + GA A   V V + D NDN P F ++ Y   +S
Sbjct: 2242 GVISVIHALDFEATSSYHLTVRATDYLTGAHAEVDVDVFVQDVNDNPPIFQKMTYRVVLS 2301

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E A IG   L        + A DKDSE N+++
Sbjct: 2302 ETAMIGTPALQ-------VVATDKDSEKNSVV 2326



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 34/73 (46%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G + +  PLD E T  Y L   AT+  G      V + + D NDN P FTQ  YT
Sbjct: 3091 IDPDSGEIKSSVPLDREMTPSYQLVAQATDGGGRWCRAVVYLTVTDVNDNPPIFTQSRYT 3150

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3151 TSVYEDTVTKALL 3163



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A +   L+V A ++ G    C+V V +LD NDN P F    Y   V
Sbjct: 2554 GQIYTTEKLDREDPANKDIVLTVAAQDLGGRVCYCTVQVTLLDDNDNAPCFRATEYRASV 2613

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  G LV         I+A D D   NA
Sbjct: 2614 KSDVAQGFLVTQ-------IQAHDPDHGINA 2637



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+ T +        ++NL V   +   +     V V I D ND+TP F Q +Y  +V+E
Sbjct: 427 GVISTARWFTRVFQDVFNLEVMEMD---SNLKVKVRVTIEDANDHTPTFAQSSYEVFVNE 483

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + P+   VLT       + A DKD   N  +
Sbjct: 484 SVPVATSVLT-------VSAVDKDKGENGYI 507



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDN-----TPYFTQLNYT 74
            GV+   K LDYE  + YNL+V A +     ++ SV    ++  D       PYF+    T
Sbjct: 991  GVIRLTKELDYETQQFYNLTVKAKDKGRPVSLLSVTFVEVEVVDVNENLYAPYFSDFALT 1050

Query: 75   GYVSEAAPIGALVLTNTS 92
            G V E A IG  +L  T+
Sbjct: 1051 GLVKENARIGTTLLQVTA 1068



 Score = 37.7 bits (86), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  GV+   K LD E    Y+L++ A +        +V+V+I   D NDN P F+  N
Sbjct: 3404 IDPLSGVIKVNKQLDRETVPSYSLAIRALDSGTPPMSSTVMVNIDISDINDNPPTFSPAN 3463

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  + E  P+G  +L  + +       D+DS  N 
Sbjct: 3464 LSVVIQENKPVGTSILQLSVI-------DEDSSQNG 3492



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++ LD E    Y ++V A++        ++ +V + +LD NDN P F + +    
Sbjct: 3198 GIVVLEQVLDREIQPFYQITVCASDQGSPLPLYSLVNVTITVLDINDNPPVFERRDQLAS 3257

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E   +G  VL        + A  KD  TNA
Sbjct: 3258 VPEDVGVGTEVLR-------VYAASKDIGTNA 3282



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LD+E++    + +   +  G+    ++  +V +H+ + NDN P F ++   G
Sbjct: 526 GVISTTEELDFESSSESFMFIVRASDWGSPYRRESEVNVTIHLENVNDNQPLFEKVACQG 585

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            + E  P+  ++ T +++ +
Sbjct: 586 IIPEDFPVNEVITTMSAIDI 605


>gi|345324502|ref|XP_003430824.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 3-like
            [Ornithorhynchus anatinus]
          Length = 4517

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 63/96 (65%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+  ++ LDYE T  Y L V ATNMAG  +  +V + ++D NDN P F    Y+
Sbjct: 1712 INPYSGVITNQRALDYERTASYQLIVQATNMAGMASNATVNIQVVDENDNAPVFLFSQYS 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V ++ + PLVIRA D DS  NALL
Sbjct: 1772 GSLSEAAPVNSVVRSSANSPLVIRATDADSNQNALL 1807



 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE    + L+V A++ ++GA+A  +V V + D NDN P F Q +Y+  +S
Sbjct: 2234 GVLSVVSPLDYETASAFKLTVRASDALSGARAEVTVDVLVTDVNDNAPVFDQPSYSATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D DSE+N L+
Sbjct: 2294 EASLIGTPVLQ-------VVASDADSESNRLV 2318



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV + D ND++P
Sbjct: 1501 SMRKFRIDPGTGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIVSVEDANDHSP 1560

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YFT   Y   + E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1561 YFTSPLYEASMFESAALGSAVLQVTAL-------DKDKGENAEL 1597



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN++V  T+     AV  V + +LD NDN P F+  +Y   +SE
Sbjct: 1409 GTIVIAKPLDAEQRSIYNMTVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSHPSYDVTISE 1467

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
              P    +L        + A D+D +
Sbjct: 1468 DVPPDTEILQ-------VEATDRDEK 1486



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G+++T +PL+     +Y L VT+           V VH+ D ND+ P F + +Y 
Sbjct: 418 IDPRSGLIVTARPLNVLEKEVYELGVTSQE---GDLKAQVTVHLEDANDHIPEFGEPSYE 474

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  +       + + A D+D   N  +
Sbjct: 475 AFVNESVPVGTSI-------VAVSASDRDKGENGYI 503



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV A++ + A A+ S   V + +LD NDN P F + +Y   
Sbjct: 3181 GIIILEQPLDREVQSSYNISVKASDQSVALALSSFATVTITVLDINDNPPVFERRDYLVT 3240

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3241 VPEDTSPGTQV-------LAVFATSKDIGTNA 3265



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 10/88 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LD+EA  ++  +V A+++  A    A  SV V + D NDN P F    Y G+
Sbjct: 2869 GWISTLRDLDHEADPMFTFAVVASDLGEAVSLSATASVAVTVTDVNDNAPAFAHEVYRGH 2928

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E+ P G +V        V+   D+D+
Sbjct: 2929 VKESDPPGEVV-------AVLSTRDRDT 2949



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2340 GLILTARLLDHESVQRSTLKVRATDSGFPPLSSEVLVTIFVTDTNDNPPVFNQLIYESYV 2399

Query: 78   SEAAPIGALV 87
            SE AP    V
Sbjct: 2400 SELAPRNHFV 2409



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y+L++TAT+ +   +AV  V V   D NDN+P   Q+ YT  + E  P 
Sbjct: 2983 KRPLDREEQDVYSLNITATDGLFVTQAVVEVTVS--DVNDNSPVCDQVAYTALIPEDIPS 3040

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              L+L        I A+D D  +N 
Sbjct: 3041 NKLILK-------ISAKDPDVGSNG 3058



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE  + + L V A +       AV +V V++ D NDN P F Q  Y+  +
Sbjct: 3287 GEISVIEELDYELCKDFYLVVEAADGGTPALSAVATVNVNLTDVNDNAPQFNQEVYSAVI 3346

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +G  V       +++ AED DS  N  +
Sbjct: 3347 SEDASVGDSV-------VLLIAEDVDSPPNGRI 3372



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T   LD E   +YNL V AT+  G    C   VH++  D NDN P F+  +
Sbjct: 3074 LDPESGELKTLALLDREKIPVYNLIVRATD--GGGRFCQSEVHLILEDVNDNPPVFSSDH 3131

Query: 73   YTGYVSEAAPIGALV 87
            Y+  V E     AL+
Sbjct: 3132 YSACVYENTATKALL 3146



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    PLD E T +Y L++T  ++   +      + V++ D NDN P F Q +Y+  V
Sbjct: 777 GQLRVLMPLDREQTDLYLLNITIYDLGKPQRSSWRLLTVNVEDANDNRPVFLQESYSVNV 836

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A D+D   N 
Sbjct: 837 LESSGIGTEIIQ-------VEARDRDRGPNG 860



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLS--VTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            +G + T +PLD E     ++S  V A +  G    C+V V ++D NDN P F  + +   
Sbjct: 2545 HGQIQTTEPLDRERPTEGDISIFVRAADGGGRATFCTVRVIVVDENDNAPQFLTVEFRAS 2604

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V      G LV         ++A D D   N+ +
Sbjct: 2605 VKADVGRGHLVTQ-------VQAVDPDDGVNSRI 2631



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-----CSVIVHILDRNDNTPYFTQLNYT 74
            G +   + LDYE  + YNL+V A +     A+       V V  ++ N +TPYF      
Sbjct: 986  GAIRLNRELDYEKQQFYNLTVRAKDKGRPVALSSVSFVEVEVVDVNENLHTPYFPDFAAV 1045

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1046 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEVQYSIRDGS 1082



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 20   GVLLTKK-PLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            GV+ T   P D E   +Y L V A+       V  VIV +   D NDNTP F  L Y   
Sbjct: 2029 GVIQTTGIPFDREEQEVYELVVEASRELDRLRVARVIVRVTVEDINDNTPVFVGLPYYAA 2088

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V   A  G  +   T++       D+D   N 
Sbjct: 2089 VQVDAEPGTSIYRVTAI-------DRDKGANG 2113


>gi|224043651|ref|XP_002200195.1| PREDICTED: protocadherin Fat 3 [Taeniopygia guttata]
          Length = 4557

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ ++K LDYE    Y L V ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1717 INPYSGVITSQKALDYEHASSYQLIVQATNMAGMASNATVNIQIVDENDNPPVFLFSEYS 1776

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1777 GSISEAAPVNSVVRSANNSPLVIRATDADSNQNALL 1812



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VI+++ D N
Sbjct: 1502 IDTVSMRKFRIDPNTGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIINVEDSN 1561

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1562 DHSPYFTSPLYEASVFESAAVGSAVLQVTAL-------DKDKGENAEL 1602



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   ++ L V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2239 GVLSVISPLDYEINSLFKLMVRASDSLTGARAEVTVDLIVNDVNDNPPVFDQSAYNATLS 2298

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D DS+ N ++
Sbjct: 2299 EASLIGTPVLQ-------VVATDADSDNNKIV 2323



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++ T + L      +Y L V A      KA   V V + D ND+TP F QL+Y+
Sbjct: 422 INPNTGLITTARSLKIIDKDLYELEVYANKGGDLKA--QVTVRLEDANDHTPEFQQLSYS 479

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G+ V       L + A D+D   N  +
Sbjct: 480 SFVNESVPVGSSV-------LAVSAVDEDRGENGYI 508



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +  +L V AT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2345 GLILTARMLDHELIQQCSLKVRATDNGFPPMSSEVLVSISITDMNDNPPVFNQLIYESYV 2404

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2405 SELAPRGHFV-------TCVQASDADS 2424



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            ++ P  G++  KK LD E    Y+L V A +        SV V+  I D NDN+P FT  
Sbjct: 3391 SVDPVLGLVKVKKKLDRERISGYSLVVQARDSGTPPLSSSVTVNVDISDVNDNSPVFTPA 3450

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NYT  + E  P+G  +L      LV+   DKDS  N 
Sbjct: 3451 NYTAVIQENKPVGTSILQ-----LVVT--DKDSFHNG 3480



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN++V  T+     A   V++ +LD NDN P F+Q +Y   +SE
Sbjct: 1414 GTIVIAKPLDAEQRSMYNMTVEVTDGTNI-ATAQVLIKVLDNNDNGPEFSQPSYDVTISE 1472

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   +L +T + L I A D+D +
Sbjct: 1473 D------ILPDTEI-LQIEAIDRDEK 1491



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+   + LD+E+ + + L V A +       AV +V V++ D NDN P F+Q  Y+  +
Sbjct: 3292 GVISIIEALDFESCKDFYLVVEAKDGGTPALSAVTTVNVNVTDVNDNAPTFSQAVYSAVI 3351

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +G  V       +++ AED DS  N  +
Sbjct: 3352 SEDAAVGDSV-------VMLIAEDLDSPPNGQI 3377



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD+E    ++  V AT   +         V V +LD NDN P F   NY   
Sbjct: 2764 GLIKLDKRLDHEINSAFHFKVAATIQLDKVDIVLTVDVEVKVLDVNDNKPVFEAANYDAV 2823

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  ++        ++A D DS  N 
Sbjct: 2824 IMEGMPIGTKLMQ-------VKAVDADSSANG 2848



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  +V A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2874 GWISTLKDLDHEKDSAFTFAVVASDLGEALSLSSTTLVSVTVTDINDNAPVFEHEVYRGS 2933

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2934 VKESDPPGEVV 2944



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L +  PLD E    YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3079 LDPENGELKSLAPLDREKIPAYNLVARATD--GGGRFCQSEIHLILEDVNDNPPVFSSDH 3136

Query: 73   YTGYVSEAAPIGALV 87
            YT  V E     AL+
Sbjct: 3137 YTACVYENTATKALL 3151



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+++ + PLD E    YN++V A++ +      +  +V + +LD NDN P F + +Y   
Sbjct: 3186 GIIILEHPLDRELQSSYNITVKASDQSIVLTLSSFATVTITVLDINDNPPVFERRDYLVT 3245

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  VL+       + A  +D  TNA
Sbjct: 3246 VPEDTSPGTEVLS-------VFATSQDIGTNA 3270



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   IY L++TAT+        +V V + D NDN P   Q+ YT    E  P  
Sbjct: 2988 KRPLDREEQDIYYLNITATDGLFVTQ-AAVEVTVTDVNDNNPVCEQVAYTALFPEDIPPN 3046

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             ++L        I A+D D  +N 
Sbjct: 3047 KVILK-------ISAKDADIGSNG 3063



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T +Y L++T  ++   +      + V + D NDN P F Q +Y+  +
Sbjct: 782 GILSVLMPLDREKTELYLLNITIYDLGNPQKSSWRLLTVTVEDANDNKPVFLQDSYSVNI 841

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+  +G  ++        + A DKD  +N 
Sbjct: 842 LESTSLGTEIIQ-------VEARDKDLGSNG 865



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDN-----TPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +     ++ S+    ++  D      TPYF      
Sbjct: 991  GAIRLNKELDYEKQQFYNLTVRAKDKGRPVSLSSLSFVEVEVVDVNENLYTPYFPDFAVI 1050

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL      +V R ED  +D E   ++ DGS
Sbjct: 1051 GSVKENSRIGTSVLQ-----VVARDEDSGRDGEIQYSIRDGS 1087


>gi|334311403|ref|XP_003339609.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2-like [Monodelphis
            domestica]
          Length = 4351

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 60/91 (65%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L V  +NMAGA A   V+V+I+D NDN P F   ++ G +SE
Sbjct: 1705 GLISTQKNLDHEKVSSYQLKVRGSNMAGAFADVMVLVYIIDENDNAPVFINSSFVGQISE 1764

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAPI +++L     PLV+RA D D++ NALL
Sbjct: 1765 AAPIHSMILGEYHHPLVVRATDADTDANALL 1795



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            +HP  G L   K LD+E T  Y+L++ AT+ +G   +     V V + D NDN P F QL
Sbjct: 3367 IHPKKGELQIAKHLDWEETSSYSLTLRATD-SGQPVLYQDAVVNVEVADVNDNPPRFFQL 3425

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NY+  V E AP+G+ VL      LV+   D+DS  N 
Sbjct: 3426 NYSIVVQENAPLGSRVLE-----LVL--SDRDSTKNG 3455



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL Y+  VS
Sbjct: 2218 GVLTVTGPLDYESQTKHIFTVRATDTALGSFSEATVEVQVEDINDNPPVFSQLVYSALVS 2277

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2278 EGLPPQTPVIQ-------LLASDQDSGRN 2299



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  KK +DYE T+ Y + V A       G  ++ SV + + D NDN P F    Y  +
Sbjct: 2742 GALTVKKAIDYETTKWYQIDVMANCSHQETGLISLVSVNIQVKDVNDNKPVFEADPYKAF 2801

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++E  P+G  V+        + A D+D+  N 
Sbjct: 2802 LTENMPVGTTVIQ-------VTANDQDTGVNG 2826



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 9/86 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNT--P 66
             L P  G L  ++ LD+E    YNLS+ A++  G K     A C V V +LD N+N   P
Sbjct: 969  GLDPLTGALSLERELDFEKRTWYNLSLWASD--GGKPMARGASCHVQVTVLDVNENLHPP 1026

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTS 92
             F    Y G V E +  G LV++ T+
Sbjct: 1027 RFASFVYQGQVEENSLPGTLVMSVTA 1052



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD+E T  Y L+VT  ++   +      + V++ D NDNTP F    Y   +
Sbjct: 766 GLLKVAAPLDHETTSFYILNVTVYDLGTPQKSTWKHLAVNVGDENDNTPRFPPGGYQVEI 825

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E   +G  +         ++AED DS+ N 
Sbjct: 826 REDIEVGTTIAQ-------MKAEDADSDDNG 849



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + + + V A +  +    A   VIV++ D NDN P F Q  Y   V
Sbjct: 2324 GEMSTTQELDYETQQQFYVKVRAVDNGVPPLSAETLVIVNVSDVNDNPPAFRQPQYEANV 2383

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LV+        ++A D DS     L+
Sbjct: 2384 SELATCGQLVIK-------VQALDPDSGDTTRLE 2410



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            + TKK LD E    Y L VTA++    +A   V V +LD NDN+P  T++ Y+  V E  
Sbjct: 2962 ITTKKTLDREHIAKYLLKVTASD-GKFQASTPVEVFVLDINDNSPQCTKILYSSKVPEDV 3020

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
              G  +L        + A D D+  NAL+
Sbjct: 3021 LPGHFILQ-------VTATDLDTGVNALV 3042



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T + +D+     Y L +  T     +A  +V++ I+D N++ P F+Q +Y G   E
Sbjct: 412 GLITTTRLMDFHDRARYQLHIGTTL---GQASTTVVIDIIDCNNHAPVFSQSSYHGTFDE 468

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G  +LT       + A D+D   N  +
Sbjct: 469 NLPPGTSILT-------VTATDQDHGENGFV 492



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E +  Y L+V A +       +V  V + ++D NDN P  ++  Y   V
Sbjct: 1083 GMIQTMMPLDREFSPHYWLTVLAVDQGSVPLSSVTEVYIEVMDTNDNPPQMSRPVYYPSV 1142

Query: 78   SEAAPIGALVL 88
             E AP+   VL
Sbjct: 1143 KEDAPMNTSVL 1153



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI     +   G + T + LD E   +Y+  V A++      + S   V V I D N
Sbjct: 2842 ELFAI-----NSENGWITTLRELDCEVQEMYSFYVVASDHGRTIQLSSKALVEVTITDEN 2896

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E    G  V T  +L   I  +++
Sbjct: 2897 DNAPQFASEVYRGSVIENGEPGEHVATLRTLDADISEQNR 2936



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           L+ E    Y L + AT    G +A   V++HILD+ND  P F+  +Y   ++E  P+ + 
Sbjct: 106 LNREVRDSYTLVIQATEQTLGYEASTHVLIHILDQNDLKPLFSPPSYKVAITEDTPLKSA 165

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
           +        ++ A D D   NA
Sbjct: 166 I-------CMVSATDADLGQNA 180



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++  + V A +  G  A CSV   + D NDN P F    YT  V
Sbjct: 2530 GQIATLQKLDRENPTEKLMPIKVMARDGGGRVAFCSVKTILTDENDNPPQFKASEYTVSV 2589

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  G+ V+        + A D D   NA
Sbjct: 2590 QSNVSKGSPVIQ-------VLAYDADEGANA 2613



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +Y L   AT+  G      V + + D NDN P F    + 
Sbjct: 3056 LDPYTGELTTLMLLDREEKDVYYLVAKATDGGGRSCQADVTIRVEDVNDNAPRF----FP 3111

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S A      V  NT++     V+ A D D   NA
Sbjct: 3112 SHCSVA------VFDNTTVKTPVAVVFARDPDEGINA 3142


>gi|291384089|ref|XP_002708683.1| PREDICTED: FAT tumor suppressor homolog 3 [Oryctolagus cuniculus]
          Length = 4559

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ T++  DYE T  Y L++ ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITTRRAPDYERTSSYQLTIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V    + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEAAPVNSIVRNLDNSPLVIRATDADSNRNALL 1811



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T  Y L++ A++ + GA+A  +V + I D NDN P F Q  Y   +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLINDVNDNPPIFDQPTYNTTLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + + D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------VVSTDADSENNKMV 2322



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VIV++ D N
Sbjct: 1501 IDSMSMRKFRIDPNTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDAN 1560

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1561 DHSPYFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +   L V AT+         V+VHI   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRATDNGFPSLSSEVLVHIHISDINDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE AP G  V         ++A D DS     LD S
Sbjct: 2404 SELAPRGHFV-------TCVQASDADSSDIDRLDYS 2432



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSLYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPHYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G++  KK LD E    Y+L V A +       +  +V + I D NDN+P FT  
Sbjct: 3390 AVDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGFPAMSSTATVNIDISDVNDNSPVFTPA 3449

Query: 72   NYTGYVSEAAPIGALVL 88
            NYT  + E  P+G  +L
Sbjct: 3450 NYTAVIQENRPVGTSIL 3466



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV AT+ +  +++ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIIILEQPLDREQQSSYNISVRATDQSPGQSLSSLATVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTSPGTQV-------LAVFATSKDIGTNA 3269



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L V   N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVK--NKEG-DLKAQVTIGIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  V       L++ A DKD   N  +
Sbjct: 479 AFVNESVPVGTSV-------LMVSAYDKDKGENGYI 507



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +   + LDYE  + + L V A +       A  +V +++ D NDN P F+
Sbjct: 3283 KFRINPKTGGISVSEVLDYEVCKRFYLVVEAKDGGTPALSAAATVSINLTDVNDNAPQFS 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A +G  V       +++ AED DS+ N  +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E   ++  SV A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2873 GWISTLKDLDHETDPMFTFSVVASDLGEAFSLSSTALVSVKVTDINDNAPVFAHEVYRGN 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 34/73 (46%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E   +YNL   AT+  G      V + + D NDN P F+  +Y 
Sbjct: 3078 LDPESGELKTFAPLDRERVPVYNLIARATDGGGRFCHSDVRLILEDVNDNPPVFSSEHYN 3137

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3138 ACVYENTATKALL 3150



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYTALFPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
              ++L        + A+D D  +N 
Sbjct: 3045 NKIILK-------VSAKDADIGSNG 3062



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNNPVFLQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD+E +  ++  V AT   +         V + +LD NDN P F   +Y   
Sbjct: 2763 GIIKLDKRLDHETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYETI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  +         +RA D D   N 
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAMDMDWGANG 2847



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D+DS  +     ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQ-------VTAQDEDSGRDGEIQYSIRDGS 1086


>gi|47212432|emb|CAF94182.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3085

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+K LDYE T  Y+L V A NMAG  +  + I+ + D NDN P F QL Y G +SE
Sbjct: 1767 GVITTRKALDYEKTASYSLIVQAVNMAGMASNATAIIQLKDENDNPPVFQQLRYHGSISE 1826

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AA + ++VL     PLVI+A D D   NALL
Sbjct: 1827 AAAVNSVVLNPDDSPLVIKATDADRNENALL 1857



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT-NMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            G++   KPLD+E  + Y    TAT   A   +V SV V +  LDRNDN P F   ++   
Sbjct: 2813 GLIRLNKPLDHELIKEYYFKATATVQQAKLDSVASVDVQVKVLDRNDNKPEFVTESFEAA 2872

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P+   +L        +RA D DS  N 
Sbjct: 2873 VMEGVPLATRILQ-------VRALDADSGANG 2897



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  + ++  V AT+       +  SV V + D NDN P F QL Y  YV
Sbjct: 2389 GLILTARMLDHELVQKFDFVVIATDNGFPPLSSEVSVTVMVSDINDNPPVFNQLLYEAYV 2448

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
             E AP G  V         ++A D DS
Sbjct: 2449 DELAPRGHFV-------TCVQASDADS 2468



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+   A A   V V +LD NDN P F+Q  Y   V E
Sbjct: 1432 GTIIIAKPLDAEQQSFYNLTVQATDGTKA-AFAQVHVTVLDTNDNAPIFSQPTYEVTVPE 1490

Query: 80   AAPIGALVL 88
              P    V+
Sbjct: 1491 DIPADTEVI 1499



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 36/123 (29%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVT--------ATNMAG------------------- 47
            +HP  G + T + LD+EA  ++ L++T        A    G                   
Sbjct: 1530 IHPTLGTIHTLQSLDHEACALHILTITVSLKLALFARGFHGYMAVNNKTKTVKKVKDQEF 1589

Query: 48   --AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
               K +  V++ + D ND+ P FT+  Y G V E++ +G+ V+  ++L       DKD  
Sbjct: 1590 PYRKNMARVLIEVKDVNDHVPIFTRSTYEGSVCESSAVGSAVVQVSAL-------DKDKG 1642

Query: 106  TNA 108
             NA
Sbjct: 1643 ENA 1645



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+E    YNL+V AT+ + GA A   V V + D NDN P F ++ Y   +S
Sbjct: 2284 GVIAVIHPLDHETAARYNLTVRATDCLTGAHAEVDVDVAVKDVNDNQPLFKKMAYQVVLS 2343

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   IG   L        + A DKDS+ N ++
Sbjct: 2344 ETVMIGTPALH-------VSATDKDSDKNNVI 2368



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+ T +     +  ++ L V   +   ++    V V I D NDNTP F Q +Y   V+E
Sbjct: 413 GVISTTQWFTGVSQSLFKLDVLEMD---SELKAQVQVAIQDANDNTPTFHQSSYEILVNE 469

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + P+G  VLT       + A+D D   N  +
Sbjct: 470 SVPVGTSVLT-------VSAQDGDDGENGYI 493



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  + +   +SV A +  G  +  +V V ++D NDN P+F    Y   V
Sbjct: 2595 GQITTAEKLDREDPSNQYVVVSVAAQDAGGHVSYATVQVSLVDENDNAPHFWATEYRASV 2654

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +   G L+         ++A D D+ TNA +
Sbjct: 2655 RSSVAEGFLLTQ-------VQASDPDAGTNARI 2680



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
            G +   K LDYE  + YNLSV A +     A+ SV    ++  D     N PYF+     
Sbjct: 976  GAIRLMKELDYETQQFYNLSVKAKDRGKPVALLSVTSVEVEVVDVNENLNAPYFSHFALK 1035

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              V E A IG  +L        + A+D D
Sbjct: 1036 ATVKENARIGTTLLQ-------VAAQDDD 1057


>gi|449269582|gb|EMC80343.1| Protocadherin Fat 3 [Columba livia]
          Length = 4549

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 61/96 (63%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+ ++K LDYE    Y + V ATNMAG  +  +V + I+D NDN P F    Y 
Sbjct: 1717 INPYSGVITSQKTLDYERASFYQIVVQATNMAGMASNATVNIQIVDENDNPPVFLFSQYL 1776

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SEAAP+ ++V +  + PLVIRA D DS  NALL
Sbjct: 1777 GSISEAAPVNSVVRSVNNSPLVIRATDADSNQNALL 1812



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE   ++ L V A++ + GA+A  +V + + D NDN P F Q +Y   +S
Sbjct: 2239 GVLSVISPLDYEINSLFKLMVRASDALTGARAEVTVDLIVNDVNDNPPLFDQSSYNATLS 2298

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL   +L       D DS+ N L+
Sbjct: 2299 EASLIGTPVLQVVAL-------DADSDNNKLV 2323



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            +   ++ K  + P  GVL T + LD+EA    I N+ V        + +  VI+++ D N
Sbjct: 1502 IDTVSMRKFRIDPSTGVLYTAERLDHEAQDKHILNVMVRDQEFPYRRNLARVIINVEDSN 1561

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D++PYFT   Y   V E+A +G+ VL  T+L       DKD   N+ L
Sbjct: 1562 DHSPYFTSPLYEASVFESAAVGSAVLQVTAL-------DKDKGENSEL 1602



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E  +  +L V AT+         V+V I   D NDN P F QL Y  YV
Sbjct: 2345 GLILTARMLDHELIQQCSLKVRATDNGFPPLSSEVLVSIFITDMNDNPPVFNQLIYESYV 2404

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2405 SELAPRGHFV-------TCVQASDADS 2424



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   +YN++V  T+     A   V++ +LD NDN P F+Q +Y   +SE
Sbjct: 1414 GTIVIAKPLDAEQRSMYNMTVEVTDGTNI-ATTQVLIKVLDNNDNGPEFSQPSYDVTISE 1472

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   +L +T + L I A D+D +
Sbjct: 1473 D------ILPDTEI-LQIEAIDRDEK 1491



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++ T + L      +Y L V        KA   V V + D ND+TP F Q +Y+
Sbjct: 422 INPNTGLITTARSLKIVEKDLYELEVYTNKGDDLKA--EVTVRLEDANDHTPEFQQASYS 479

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G+ V       L + A DKD   N  +
Sbjct: 480 SFVNESVPVGSSV-------LAVSAVDKDRGENGYI 508



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            ++ P  G++  KK LD E    Y+L + A +        SV V+  I D NDN P FT  
Sbjct: 3391 SVDPGLGLVKVKKKLDRERISGYSLVIQARDSGTPPLSSSVTVNVDISDVNDNGPIFTPA 3450

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NYT  + E  P+G  +L      LV+   DKDS  N 
Sbjct: 3451 NYTAVIQENKPVGTSILQ-----LVVT--DKDSFHNG 3480



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE+ + + L V A +       AV +V V++ D NDN P F+Q  Y+  +
Sbjct: 3292 GAISIFEALDYESCKDFYLVVEAKDGGTPALSAVTTVNVNVTDVNDNAPKFSQAVYSAVI 3351

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +G  V       +++ AED DS  N  +
Sbjct: 3352 SEDAAVGDSV-------IMLIAEDLDSPPNGQI 3377



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L +  PLD E   +YNL   AT+  G    C   +H++  D NDN P F+  +
Sbjct: 3079 LDPENGELKSLAPLDREKIPVYNLVARATD--GGGRFCQSEIHLILEDVNDNPPVFSSDH 3136

Query: 73   YTGYVSEAAPIGALV 87
            YT  V E     AL+
Sbjct: 3137 YTACVYENTATKALL 3151



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+++ + PLD E    YN+SV A++ +      +  +V + +LD NDN P F + +Y   
Sbjct: 3186 GIIILEHPLDRELQSSYNISVKASDQSIVLTLSSFATVTITVLDINDNPPVFERRDYLVT 3245

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  VL+       + A  +D  TNA
Sbjct: 3246 VPEDTSPGTEVLS-------VFATSQDIGTNA 3270



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  +V A+++  A ++ S   V V + D NDN P F    Y G 
Sbjct: 2874 GWISTLKDLDHEKDPAFTFAVVASDLGEALSLSSTTLVSVTVTDINDNAPVFEHEVYRGS 2933

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2934 VKESDPPGEVV 2944



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD+E    ++  V AT   +         V V +LD NDN P F   +Y   
Sbjct: 2764 GLIKLDKRLDHETNPAFHFKVAATIQLDKVDIALTVDVEVKVLDVNDNKPVFETASYDAI 2823

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  ++        ++A D DS  N 
Sbjct: 2824 IMEGMPIGTKLMQ-------VKAVDADSSANG 2848



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K+PLD E   +Y L++TAT+        +V V + D NDN P   Q+ YT    E  P  
Sbjct: 2988 KRPLDREEQDLYYLNITATDGLFVTQ-AAVEVTVTDVNDNNPVCEQVAYTALFPEDIPSN 3046

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             ++L        I A+D D  +N 
Sbjct: 3047 KVILK-------ISAKDADIGSNG 3063



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N  TPYF      
Sbjct: 991  GAIRLNKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLYTPYFPDFAVI 1050

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL      +V R ED  +D E   ++ DGS
Sbjct: 1051 GSVKENSRIGTSVLQ-----VVARDEDSGRDGEIQYSIRDGS 1087



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +LT + LD E     ++ +   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2551 GQILTTERLDRENPLESDIGIFLRALDGGGRTTFCTVRVIVVDENDNAPQFMAVEYRASV 2610

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  G LV         ++A D D+  N+ +
Sbjct: 2611 KADVGKGYLVTQ-------VQAVDPDAGANSRI 2636



 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GVL    PLD E T +Y L++T  ++      A   + V + D NDN P F Q +Y+  +
Sbjct: 782 GVLNVLMPLDREKTDLYLLNITIYDLGNPPKSAWRLLTVTVEDANDNKPVFLQDSYSVNI 841

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+  +   ++        + A DKD  +N 
Sbjct: 842 LESTSLLTEIIQ-------VEARDKDLGSNG 865


>gi|338713124|ref|XP_001917610.2| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2-like [Equus
            caballus]
          Length = 4351

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 60/91 (65%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V+I+D NDN P F +L + G +SE
Sbjct: 1710 GLIATQKNLDHEKISSYQLKIRGSNMAGAFTDVVVLVYIIDENDNAPMFLKLTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P+VIRA D D E N+LL
Sbjct: 1770 AAPLNSMIVDENNNPVVIRASDSDKEANSLL 1800



 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y+L V AT+           + + ++D NDN P F QLN
Sbjct: 3373 IHPKKGELKVAKALDWEQTSSYSLRVRATDNGRPPLHEDTDITIQVVDVNDNPPRFFQLN 3432

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +P+G+ VL
Sbjct: 3433 YSTSVQENSPVGSKVL 3448



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            + ++K LD E    Y L +TA++    K   SV+V I  LD NDN+P  +QL YTG VSE
Sbjct: 2968 IFSRKTLDREQMAKYLLRITASD---GKFQASVLVEIFVLDINDNSPQCSQLLYTGKVSE 3024

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G  +L        + A D DS+TNA +
Sbjct: 3025 DVSPGHFILK-------VSATDLDSDTNAQI 3048



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 8   FAILKP-----ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P     ++ P  G++ T KP+DYE   RIY   V A++       +   SV + +
Sbjct: 495 YSIARPKSVPFSIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRL 554

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            + NDN P F ++N T  + E  P+G  V+T +++
Sbjct: 555 RNLNDNRPMFEEVNCTVAIREDWPVGKSVMTVSAI 589



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATSFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQVTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   IG  +         ++A+D DSE N 
Sbjct: 830 SEDTEIGTTIAE-------LKAKDADSEDNG 853



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+Q  YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHTFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQSVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLAFDQDSGQN 2304



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            L P  G+L   + LD+E    Y LS+  +    +    + +++V+I D N++ P F Q  
Sbjct: 3268 LDPRTGILYVNRSLDFETNPKYFLSIECSRKGSSSLSDMTTIVVNITDTNEHRPRFLQDL 3327

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  V E A +G LVLT       + A D+D   N+ +
Sbjct: 3328 YSTRVLENAVVGDLVLT-------VSATDEDGPVNSAI 3358



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQL 71
            P  GVL  +K LD+E    YNLS+  ++       + +C V V +LD N+N   P F   
Sbjct: 976  PSTGVLSLEKELDFERRAGYNLSLWVSDSGRPLARRTLCHVEVIVLDVNENLHPPRFASF 1035

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + G V E +P G  V+        + A D DS  +  L
Sbjct: 1036 VHQGQVQENSPSGTQVMG-------VTAHDDDSGLDGEL 1067



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQALDPDSRDISRLE 2415



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2748 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTYLVSLVSVNIQVKDVNDNRPIFEADPYKAV 2807

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2808 LTENMPVGTTVIQVTA 2823



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +Y+L   AT+  G      V +H+ D NDN P F      
Sbjct: 3062 LDPHTGELTTLTALDREKKDVYSLVAKATDGGGQSCQADVTLHVEDVNDNAPRF------ 3115

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D  TNA
Sbjct: 3116 -FPSHCA---VAVFDNTTVKTPVAVVLARDPDQGTNA 3148



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+LT  PLD E    Y L+V A +       +V  V + ++D NDN+P  ++  +   V
Sbjct: 1087 GVILTLAPLDREFVSCYWLTVQAVDSGSVPLSSVTEVYIEVMDVNDNSPRMSRPVFYPSV 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+   VL        + A D DS +   L
Sbjct: 1147 REDAPLYTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L + A+      A  +V+V I+D N
Sbjct: 396 VLKPSSDSAGFKLNARTGLITTTKLMDFRDRAHYQLHIRASP---GLASTTVVVDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G   E  P G  VLT       + A D+D   N 
Sbjct: 453 NHAPIFNRSSYEGTFDENIPPGTSVLT-------VTATDRDHGENG 491



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SVQSNVSKDSPV 2604



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  + Y   V A +      + S   V V I D N
Sbjct: 2848 ELFAIDSET-----GWITTLQELDCETRQTYRFYVVAYDHGRTIQLSSQVLVEVSITDEN 2902

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G  V T  +L   +  +++
Sbjct: 2903 DNAPQFASEDYRGSVVENSEPGEPVATLKTLDADVSEQNR 2942



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      ++   V+V ILD NDN P F+ 
Sbjct: 1187 VHPLTGLLSTARQLDRENKDEHILEVTVQDNGEPSLRSTSRVVVRILDVNDNPPVFSH 1244



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L V AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIVQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|395520507|ref|XP_003764370.1| PREDICTED: protocadherin Fat 3 isoform 1 [Sarcophilus harrisii]
          Length = 4557

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+  +K LDYE    Y L V ATNMAG  +  +V + I+D NDN P F   +Y+
Sbjct: 1716 INPYSGVITNQKALDYERISSYQLIVQATNMAGMASNATVNIQIVDENDNPPIFLFSHYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE API ++V ++ + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEVAPINSIVRSSGNNPLVIRATDADSNQNALL 1811



 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T ++ L+V A++ + GA+A  +V + I D NDN P F Q  Y   +S
Sbjct: 2238 GVLNVISPLDYEETPVFKLTVRASDALTGARAEVTVDLLINDVNDNPPIFNQPAYNATLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------VVASDADSENNKVV 2322



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PLD     +Y L V+  N  G  +   V + + D ND+TP F Q +Y 
Sbjct: 422 INPRSGLIVTAQPLDVSRKEVYELGVS--NKEGDLS-AQVTISLEDANDHTPEFQQPSYE 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VL+       + A DKD   N  +
Sbjct: 479 AFVNESVPVGTSVLS-------VSASDKDKGENGYI 507



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQSSYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L + A D+D +
Sbjct: 1472 D------VLPDTEI-LQVEATDRDEK 1490



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+V+I   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHESVQQSTLKVRATDNGFPPMSSEVLVNIYVTDMNDNPPIFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   + LD+EA    I N+ V        + +  VIV++ D ND++PYFT   Y   V
Sbjct: 1516 GVLYIAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSPYFTSPLYEASV 1575

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1576 FESAALGSAVLQVTAL-------DKDRGENAEL 1601



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G++  KK LD E    Y+L + AT+ +G  A+ S +   + I D NDN P FT  NYT  
Sbjct: 3396 GLIKVKKKLDRERVSGYSLLIQATD-SGIPAMSSTVTVNIDISDVNDNGPVFTPANYTAV 3454

Query: 77   VSEAAPIGALVL 88
            + E  P+G  +L
Sbjct: 3455 IQENKPVGTSIL 3466



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV A++ +  KA+ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIIILEQPLDRELQSSYNISVKASDQSILKALSSLATVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTSPGTEV-------LAVFATSKDIGTNA 3269



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +     LDYE  + + L V A +       AV +V +++ D NDN P F 
Sbjct: 3283 KFMINPKTGGISVIDSLDYEMCKDFYLVVEAKDGGTPALSAVATVNINLTDVNDNAPKFN 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A IG  V       +V+ AED DS  N  +
Sbjct: 3343 QEVYSAVISEDASIGDSV-------IVLIAEDVDSPPNGQI 3376



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TAT+ +   +A+  V V  +D NDN+P   Q+ YT    E  P 
Sbjct: 2987 KRPLDREEQDVYFLNITATDGLFVTQAMVEVTV--IDVNDNSPVCDQVAYTALFPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKD 103
              ++L        I A+D D
Sbjct: 3045 NKIILK-------ISAKDAD 3057



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S I   V + D NDN P F    Y   
Sbjct: 2873 GWISTLKDLDHERDPTFAFSVVASDLGEAFSLSSTILVSVTVTDINDNAPVFGHEMYREQ 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREQTDLYLLNITIYDLGRPQKSSWRLLTINVEDANDNRPIFLQESYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD E    +   V AT   +         + + +LD NDN P+F   +Y   
Sbjct: 2763 GIIKLDKRLDREMIPAFYFKVAATIPLDKVDIVFTVDIEIKVLDLNDNKPFFDASSYEAI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  ++        ++A D+D   N 
Sbjct: 2823 IMEGMPIGTRLIQ-------VKAIDRDWGANG 2847



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3078 LDPESGELKTLALLDREKIPVYNLVARATDGGGRFCQSDIRLILEDVNDNPPIFSSDHYN 3137

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3138 ACVYENTATKALL 3150



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T + LD E+    ++S+   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2550 GQVITTERLDRESPMEGDISIFLRALDGGGRTTFCTVRVIVVDENDNAPQFLTVEYRASV 2609

Query: 78   SEAAPIGALV 87
                  G LV
Sbjct: 2610 RADVGRGHLV 2619


>gi|395520509|ref|XP_003764371.1| PREDICTED: protocadherin Fat 3 isoform 2 [Sarcophilus harrisii]
          Length = 4589

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+  +K LDYE    Y L V ATNMAG  +  +V + I+D NDN P F   +Y+
Sbjct: 1716 INPYSGVITNQKALDYERISSYQLIVQATNMAGMASNATVNIQIVDENDNPPIFLFSHYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE API ++V ++ + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEVAPINSIVRSSGNNPLVIRATDADSNQNALL 1811



 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T ++ L+V A++ + GA+A  +V + I D NDN P F Q  Y   +S
Sbjct: 2238 GVLNVISPLDYEETPVFKLTVRASDALTGARAEVTVDLLINDVNDNPPIFNQPAYNATLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------VVASDADSENNKVV 2322



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PLD     +Y L V+  N  G  +   V + + D ND+TP F Q +Y 
Sbjct: 422 INPRSGLIVTAQPLDVSRKEVYELGVS--NKEGDLS-AQVTISLEDANDHTPEFQQPSYE 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VL+       + A DKD   N  +
Sbjct: 479 AFVNESVPVGTSVLS-------VSASDKDKGENGYI 507



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQSSYDVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L + A D+D +
Sbjct: 1472 D------VLPDTEI-LQVEATDRDEK 1490



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+V+I   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHESVQQSTLKVRATDNGFPPMSSEVLVNIYVTDMNDNPPIFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   + LD+EA    I N+ V        + +  VIV++ D ND++PYFT   Y   V
Sbjct: 1516 GVLYIAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSPYFTSPLYEASV 1575

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1576 FESAALGSAVLQVTAL-------DKDRGENAEL 1601



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G++  KK LD E    Y+L + AT+ +G  A+ S +   + I D NDN P FT  NYT  
Sbjct: 3396 GLIKVKKKLDRERVSGYSLLIQATD-SGIPAMSSTVTVNIDISDVNDNGPVFTPANYTAV 3454

Query: 77   VSEAAPIGALVL 88
            + E  P+G  +L
Sbjct: 3455 IQENKPVGTSIL 3466



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV A++ +  KA+ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIIILEQPLDRELQSSYNISVKASDQSILKALSSLATVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTSPGTEV-------LAVFATSKDIGTNA 3269



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G +     LDYE  + + L V A +       AV +V +++ D NDN P F 
Sbjct: 3283 KFMINPKTGGISVIDSLDYEMCKDFYLVVEAKDGGTPALSAVATVNINLTDVNDNAPKFN 3342

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y+  +SE A IG  V       +V+ AED DS  N  +
Sbjct: 3343 QEVYSAVISEDASIGDSV-------IVLIAEDVDSPPNGQI 3376



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 10/80 (12%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   +Y L++TAT+ +   +A+  V V  +D NDN+P   Q+ YT    E  P 
Sbjct: 2987 KRPLDREEQDVYFLNITATDGLFVTQAMVEVTV--IDVNDNSPVCDQVAYTALFPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKD 103
              ++L        I A+D D
Sbjct: 3045 NKIILK-------ISAKDAD 3057



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S I   V + D NDN P F    Y   
Sbjct: 2873 GWISTLKDLDHERDPTFAFSVVASDLGEAFSLSSTILVSVTVTDINDNAPVFGHEMYREQ 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREQTDLYLLNITIYDLGRPQKSSWRLLTINVEDANDNRPIFLQESYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   K LD E    +   V AT   +         + + +LD NDN P+F   +Y   
Sbjct: 2763 GIIKLDKRLDREMIPAFYFKVAATIPLDKVDIVFTVDIEIKVLDLNDNKPFFDASSYEAI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  PIG  ++        ++A D+D   N 
Sbjct: 2823 IMEGMPIGTRLIQ-------VKAIDRDWGANG 2847



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3078 LDPESGELKTLALLDREKIPVYNLVARATDGGGRFCQSDIRLILEDVNDNPPIFSSDHYN 3137

Query: 75   GYVSEAAPIGALV 87
              V E     AL+
Sbjct: 3138 ACVYENTATKALL 3150



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T + LD E+    ++S+   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2550 GQVITTERLDRESPMEGDISIFLRALDGGGRTTFCTVRVIVVDENDNAPQFLTVEYRASV 2609

Query: 78   SEAAPIGALV 87
                  G LV
Sbjct: 2610 RADVGRGHLV 2619


>gi|47085727|ref|NP_998132.1| protocadherin Fat 1 precursor [Danio rerio]
 gi|27463074|gb|AAO15696.1|AF469608_1 protocadherin [Danio rerio]
          Length = 4610

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 62/96 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++T   LDYE    Y L++  TNMAG  +  ++++H+ D NDN P F Q  + 
Sbjct: 1709 INPNSGVVVTHSVLDYETIPSYKLTIQGTNMAGLASNTTLLIHLKDENDNAPVFIQDQFA 1768

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G VSE++P+ ++VLT  + PLVIRA D D + N+ L
Sbjct: 1769 GMVSESSPVNSVVLTKDNTPLVIRALDTDRDANSRL 1804



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
            F++ K  L P  GVL T + LD+E    + L+V     ++   + +  VIV++ D NDN 
Sbjct: 1497 FSLRKFRLDPGTGVLYTAERLDHETMHQHTLTVMVRDQDIPVKRNLVRVIVNVQDTNDNA 1556

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+F+   Y G V E+A  G+ VL  ++L       DKD   NA
Sbjct: 1557 PWFSGAPYVGRVFESAATGSAVLQVSAL-------DKDKGQNA 1592



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A++P  G++ T  PL  ++   Y L V  ++    KAV  VI+ ++D N+N P F Q +Y
Sbjct: 410 AINPDSGLITTAAPLHADSVNKYELEVVTSD---KKAVTKVIIDVIDVNNNGPEFKQTSY 466

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P G  VLT       ++A D DS  N  +
Sbjct: 467 KASLDENMPTGTSVLT-------VKATDLDSGENGYV 496



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 15/102 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            GV+   +PLD E   +Y L   AT+    + + S   + V ILD NDN P F +  YT  
Sbjct: 3177 GVVRLDRPLDRELQSLYTLRAQATDRGSPRHLSSQTLLSVSILDINDNPPVFERREYTAT 3236

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSE-----TNALLDGS 113
            V+E  P+G  VL        + A  +D+E     T A+++G+
Sbjct: 3237 VAEDIPVGTQVLR-------VHAASRDTEAGTEITYAIINGN 3271



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
            + P  G L   K LD+E+T+ Y L++ A +   G+K V +V   + + D NDN P F   
Sbjct: 2750 VDPSSGSLKLDKKLDHESTKWYQLTLQAQSEYEGSKVVSAVDISIQVKDVNDNRPLFESN 2809

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y  +V E  P G  V+        ++A D DS TN 
Sbjct: 2810 PYEAFVVENLPGGTCVIQ-------VKATDLDSGTNG 2839



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+   K LD+E    Y LSV AT+ + GAKA   V + + D NDN P F    Y   +S
Sbjct: 2231 GVIQVVKTLDFETHPAYKLSVRATDSLTGAKAEVFVDIILEDVNDNPPVFHTKLYNASLS 2290

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D D+  N +L
Sbjct: 2291 EASVIGTSVLE-------VSATDADTGNNKVL 2315



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLN 72
            + P  G +   + LD E T  Y L+V A++  G A++  + I V + D NDN P F+Q N
Sbjct: 3383 IDPVRGEVKVARLLDREKTSGYTLTVLASDNGGPARSSSATINVDVSDINDNPPIFSQAN 3442

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  + E  PIGA VL
Sbjct: 3443 YSIIIQENQPIGASVL 3458



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 14/106 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G +   +PLDYE    + L+V AT+        + +V +++ D NDN+P F Q  
Sbjct: 3278 VDPQTGGVFVIEPLDYETAHEFYLTVEATDGGTPSLSDLATVNINLTDVNDNSPVFNQDI 3337

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            Y+  +SE A +G  VLT       + A+D D  ++     +++DG+
Sbjct: 3338 YSAVISEDAELGKTVLT-------VMADDADGPSSNQVRFSIIDGN 3376



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVS 78
           G L    PLD E T  Y L++T  ++   K+   ++ V ILD NDN P F +  Y+  +S
Sbjct: 770 GWLKVFAPLDRETTDHYTLNITVYDLVPQKSSSRLLDVKILDANDNGPQFLKETYSVEIS 829

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E++ +G  V+        + A+DKD   N ++
Sbjct: 830 ESSTVGTEVIQ-------VEAKDKDLGDNGVV 854



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LD+E    + L + A +  G  A+ S   V++ ++D NDNTP F+Q  Y   
Sbjct: 2337 GTIWTTRMLDHEEKPSHRLLIRAVD-GGVPALSSEVMVLIDVMDLNDNTPVFSQNVYEAT 2395

Query: 77   VSEAAPIGALV 87
            VSE AP G  V
Sbjct: 2396 VSELAPRGHFV 2406



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL--DRNDNTPYFT 69
           A+    G++  KKPLD E   ++ L + A + A A  + V +V++ I   D NDN P F 
Sbjct: 866 AIDTETGIVTVKKPLDREVQPVFVLKIAARDQATAEPQLVSTVLLKITLEDVNDNPPKFI 925

Query: 70  QLNYTGYVSEAAPIGALVL 88
             NY   V E  PIG +++
Sbjct: 926 PPNYHVRVREDLPIGTVIM 944



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KPLD E    Y L++TAT+    AKAV  V V +LD +DN+P   +  Y   V E +P 
Sbjct: 2979 RKPLDREEKDNYLLNITATDGTFTAKAV--VEVKVLDASDNSPICEKSFYMESVPEDSPA 3036

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G L+L        + A D D  +NA +
Sbjct: 3037 GRLILQ-------VSATDADIRSNAQI 3056



 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  + LD E    YNL+V AT+  G ++V + V++ ++D N++ P F++  Y   VS
Sbjct: 1406 GTMIVAQALDAEQKSHYNLTVNATD--GTRSVSTQVLIKVIDTNNHRPQFSKPKYEVDVS 1463

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E  P    VL        I A D+D E N L
Sbjct: 1464 EDTPPETEVLR-------ISATDQD-EKNKL 1486



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G +   + LDYE  ++Y+L+  A +        + C + V ++D N+N   P F      
Sbjct: 978  GAVRIVQNLDYEKKQVYSLTAKAKDKGKPISLSSSCHIEVEVVDVNENLYRPLFPSFVDK 1037

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDK--DSETN-ALLDGS 113
            G++ E  PIG  V+  T+     + EDK  D E   ++ DGS
Sbjct: 1038 GFIKEDVPIGTSVMKITA-----QDEDKGRDGEIRYSIRDGS 1074



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E    ++  +S+ A +  G    C+V V + D NDN P F   +Y   V
Sbjct: 2543 GEIFTLESLDRENALEKVIPISLIAKDGGGKVGFCTVNVILTDINDNAPQFRAADYRVNV 2602

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +   P G  +L        I A D D  +NA
Sbjct: 2603 ASDVPRGTTILK-------IAASDMDEGSNA 2626



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 17/114 (14%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIV 56
            ++ I++P  H  +      G + T   LDYE   ++  SV   +M      A+   +V +
Sbjct: 1805 VYQIVEPFAHNYFAIDSSTGAIRTISELDYEQRSVFRFSVQVHDMGIPRHFAEKAANVTI 1864

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             ILD ND  P F+Q  Y   V      G  V+T       + A D DS  N+ L
Sbjct: 1865 EILDVNDCPPQFSQDLYETTVLVPTYKGVEVIT-------VNASDADSGPNSRL 1911



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 29/64 (45%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T  PLD E   ++ + V A +  G      V + + D NDN P FT   YT  V E
Sbjct: 3075 GELKTLLPLDREEEEVHKMKVRALDGGGRFCEAEVEITVEDVNDNPPQFTTDPYTFTVFE 3134

Query: 80   AAPI 83
               I
Sbjct: 3135 NTEI 3138


>gi|296485147|tpg|DAA27262.1| TPA: FAT tumor suppressor homolog 2 [Bos taurus]
          Length = 3159

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 59/91 (64%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T+K LD+E    Y L +  +NMAG      V+V+I+D NDN P F++  + G +SE
Sbjct: 518 GLISTQKKLDHEKISSYQLKIRGSNMAGTFTDVMVLVYIIDENDNAPVFSKSTFVGQISE 577

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           AAP+ ++++   + PLVIRA D D E N+LL
Sbjct: 578 AAPLNSMIMDENNNPLVIRASDSDKEANSLL 608



 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            A+HP  G L   K LD+E T  Y+L + AT+ +G  A+     + + ++D NDN P F Q
Sbjct: 2180 AIHPKKGELQVAKALDWEQTSSYSLKLRATD-SGQPALYEDTDIAIQVVDVNDNPPRFFQ 2238

Query: 71   LNYTGYVSEAAPIGALVL 88
            LNY+  V E APIG+ VL
Sbjct: 2239 LNYSTSVQENAPIGSKVL 2256



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            + ++K LD E T  Y L +TA++    +A   V + +LD NDN+P  +QL YTG VSE  
Sbjct: 1776 IFSRKTLDREHTAKYLLRITASD-GKFQASVPVEIFVLDINDNSPQCSQLLYTGKVSEDV 1834

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P    +L        + A D DS+TNA +
Sbjct: 1835 PPEHFILK-------VSATDLDSDTNAQI 1856



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 1031 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 1090

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 1091 EGLPAQTPVIQ-------LLASDQDSGQN 1112



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q +Y   V
Sbjct: 1137 GEMSTVQELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPHYEANV 1196

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 1197 SELATCGHLVLK-------VQALDPDSRDTSRLE 1223



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 1556 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTYLGSLVSVNIQVKDVNDNRPIFEADPYKAV 1615

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 1616 LTENMPVGTSVIQVTA 1631



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E +  Y LSV  +    +    + +++V+I D N++ P F Q  Y+  V
Sbjct: 2081 GILYVNKSLDFETSPKYFLSVECSRKGSSSLSDMTTIVVNITDINEHRPRFPQHLYSTRV 2140

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 2141 LENAIVGDVVLT-------VSATDEDGPVNSAI 2166



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +Y+L   AT+  G      V +H+ D NDN P F      
Sbjct: 1870 LDPHTGDLTTLTALDREKKDVYSLVAKATDGGGQSCQADVTLHVEDVNDNAPRF------ 1923

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S +A     V  NT++     V+ A D D  TNA
Sbjct: 1924 -FPSHSA---VAVFDNTTVKTPVAVVLARDPDQGTNA 1956



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  +IY+  V A +      + S   V V I D N
Sbjct: 1656 ELFAIDSET-----GWITTLQELDCETNQIYHFYVVAYDHGRTIQLSSQVLVEVSITDEN 1710

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G  V T  +L   I  +++
Sbjct: 1711 DNAPRFASEDYRGSVVENSEPGEPVATLKTLDADIAEQNR 1750



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 1341 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYT 1399



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 15  LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           L P  GVL+T   LD  +        + V    M   +    V +H+ D N + P FTQL
Sbjct: 307 LDPSSGVLVTVGKLDLGSGPSQHTLTVMVRDQEMPIKRNFVWVSIHVEDGNLHPPRFTQL 366

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +Y   VS+    GA +L        +RA D D   NA
Sbjct: 367 HYETRVSDTTVPGAELLQ-------VRAMDGDRGANA 396


>gi|300796778|ref|NP_001179501.1| protocadherin Fat 2 precursor [Bos taurus]
          Length = 4347

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 59/91 (64%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAG      V+V+I+D NDN P F++  + G +SE
Sbjct: 1706 GLISTQKKLDHEKISSYQLKIRGSNMAGTFTDVMVLVYIIDENDNAPVFSKSTFVGQISE 1765

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + PLVIRA D D E N+LL
Sbjct: 1766 AAPLNSMIMDENNNPLVIRASDSDKEANSLL 1796



 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            A+HP  G L   K LD+E T  Y+L + AT+ +G  A+     + + ++D NDN P F Q
Sbjct: 3368 AIHPKKGELQVAKALDWEQTSSYSLKLRATD-SGQPALYEDTDIAIQVVDVNDNPPRFFQ 3426

Query: 71   LNYTGYVSEAAPIGALVL 88
            LNY+  V E APIG+ VL
Sbjct: 3427 LNYSTSVQENAPIGSKVL 3444



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 8   FAILKP-----ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P     ++ P  G++ T KP+DYE   RIY   V A++       +   SV + +
Sbjct: 491 YSITRPNAVPFSIDPYLGIISTSKPMDYELMNRIYTFRVRASDWGSPFRQEKEVSVSLRL 550

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            + NDN P F ++N TG + E  P+G  V+T +++
Sbjct: 551 KNLNDNKPMFEEVNCTGSIHEDWPVGKSVMTVSAI 585



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            + ++K LD E T  Y L +TA++    +A   V + +LD NDN+P  +QL YTG VSE  
Sbjct: 2964 IFSRKTLDREHTAKYLLRITASD-GKFQASVPVEIFVLDINDNSPQCSQLLYTGKVSEDV 3022

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P    +L        + A D DS+TNA +
Sbjct: 3023 PPEHFILK-------VSATDLDSDTNAQI 3044



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2219 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2278

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2279 EGLPAQTPVIQ-------LLASDQDSGQN 2300



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 766 GLLTVAAPLDYEATSFYVLNVTVYDLGTPQKSSWKLLTVNVEDWNDNAPRFPPGGYQVTI 825

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  V         ++A+D DSE N 
Sbjct: 826 SEDTEVGTTVAE-------LKAKDVDSEDNG 849



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFT 69
            ++P  G L  +K LD+E    YNLS+ A++       + +C V V +LD N+N   P F 
Sbjct: 970  VNPMTGALSLEKELDFERRAGYNLSLWASDSGKPLARRTLCHVEVTVLDVNENLHPPRFA 1029

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS----ETNALLDGST 114
               + G V E +P G  V       +V+ A D D+    E    L G T
Sbjct: 1030 SFVHQGQVQENSPSGTSV-------MVVAAHDDDTGLDGELQYFLRGGT 1071



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q +Y   V
Sbjct: 2325 GEMSTVQELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPHYEANV 2384

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2385 SELATCGHLVLK-------VQALDPDSRDTSRLE 2411



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2744 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTYLGSLVSVNIQVKDVNDNRPIFEADPYKAV 2803

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2804 LTENMPVGTSVIQVTA 2819



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E +  Y LSV  +    +    + +++V+I D N++ P F Q  Y+  V
Sbjct: 3269 GILYVNKSLDFETSPKYFLSVECSRKGSSSLSDMTTIVVNITDINEHRPRFPQHLYSTRV 3328

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 3329 LENAIVGDVVLT-------VSATDEDGPVNSAI 3354



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +Y+L   AT+  G      V +H+ D NDN P F      
Sbjct: 3058 LDPHTGDLTTLTALDREKKDVYSLVAKATDGGGQSCQADVTLHVEDVNDNAPRF------ 3111

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S +A     V  NT++     V+ A D D  TNA
Sbjct: 3112 -FPSHSA---VAVFDNTTVKTPVAVVLARDPDQGTNA 3144



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  +IY+  V A +      + S   V V I D N
Sbjct: 2844 ELFAIDSET-----GWITTLQELDCETNQIYHFYVVAYDHGRTIQLSSQVLVEVSITDEN 2898

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G  V T  +L   I  +++
Sbjct: 2899 DNAPRFASEDYRGSVVENSEPGEPVATLKTLDADIAEQNR 2938



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2529 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2588

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2589 SIQSNVSKDSPV 2600



 Score = 37.7 bits (86), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +   A  +V++ I+D N
Sbjct: 392 VLKPSSESAAFKLNARTGLITTTKLMDFHDQAQYQLRI---RTSPGLASTTVVIDIMDCN 448

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P F + +Y G   E  P G  VLT       + A D+D   N  +
Sbjct: 449 NHAPVFNRSSYDGTFDENIPPGTSVLT-------VTATDQDHGENGYI 489



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + +LD NDN P  ++  +   V
Sbjct: 1083 GMIQTLAPLDREFASCYWLTVLAVDRGSIPLSSVTEVYIEVLDVNDNPPQMSRPVFYPTV 1142

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+   VL        + A D DS +   L
Sbjct: 1143 REDAPLHTSVLQ-------LDAWDLDSSSKGKL 1168



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +        + V    M   +    V +H+ D N + P FTQL
Sbjct: 1495 LDPSSGVLVTVGKLDLGSGPSQHTLTVMVRDQEMPIKRNFVWVSIHVEDGNLHPPRFTQL 1554

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   VS+    GA +L        +RA D D   NA
Sbjct: 1555 HYETRVSDTTVPGAELLQ-------VRAMDGDRGANA 1584



 Score = 34.7 bits (78), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            LHP  G+L T + LD E    + L VT  +      ++   V+V I D NDN P F+ 
Sbjct: 1183 LHPLTGLLATARQLDRENKDEHILEVTVLDNGEPSLRSTSRVVVRIADVNDNPPVFSH 1240


>gi|440904071|gb|ELR54637.1| Protocadherin Fat 2 [Bos grunniens mutus]
          Length = 4347

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 59/91 (64%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAG      V+V+I+D NDN P F++  + G +SE
Sbjct: 1706 GLISTQKKLDHEKISSYQLKIRGSNMAGTFTDVMVLVYIIDENDNAPVFSKSTFMGQISE 1765

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + PLVIRA D D E N+LL
Sbjct: 1766 AAPLNSMIMDENNNPLVIRASDSDKEANSLL 1796



 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            A+HP  G L   K LD+E T  Y+L + AT+ +G  A+     + + ++D NDN P F Q
Sbjct: 3368 AIHPKKGELQVAKALDWEQTSSYSLKLRATD-SGQPALYEDTDIAIQVVDVNDNPPRFFQ 3426

Query: 71   LNYTGYVSEAAPIGALVL 88
            LNY+  V E APIG+ VL
Sbjct: 3427 LNYSTSVQENAPIGSKVL 3444



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   SV + + + NDN P F 
Sbjct: 502 SIDPYLGIISTSKPMDYELMNRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNKPMFE 561

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + E  P+G  V+T +++
Sbjct: 562 EVNCTGSIHEDWPVGKSVMTVSAI 585



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            + ++K LD E T  Y L +TA++    +A   V + +LD NDN+P  +QL YTG VSE  
Sbjct: 2964 IFSRKTLDREHTAKYLLRITASD-GKFQASVPVEIFVLDINDNSPQCSQLLYTGKVSEDV 3022

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P    +L        + A D DS+TNA +
Sbjct: 3023 PPEHFILK-------VSATDLDSDTNAQI 3044



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2219 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2278

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2279 EGLPAQTPVIQ-------LLASDQDSGQN 2300



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 766 GLLTVAAPLDYEATSFYVLNVTVYDLGTPQKSSWKLLTVNVEDWNDNAPRFPPGGYQVTI 825

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  V         ++A+D DSE N 
Sbjct: 826 SEDTEVGTTVAE-------LKAKDVDSEDNG 849



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFT 69
            ++P  G L  +K LD+E    YNLS+ A++       + +C V V +LD N+N   P F 
Sbjct: 970  VNPMTGALSLEKELDFERRAGYNLSLWASDSGKPLARRTLCHVEVTVLDVNENLHPPRFA 1029

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS----ETNALLDGST 114
               + G V E +P G  V       +V+ A D D+    E    L G T
Sbjct: 1030 SFVHQGQVQENSPSGTSV-------MVVAAHDDDTGLDGELQYFLRGGT 1071



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2325 GEMSTVQELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2384

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2385 SELATCGHLVLK-------VQALDPDSRDTSRLE 2411



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2744 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTYLGSLVSVNIQVKDVNDNRPIFEADPYKAV 2803

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2804 LTENMPVGTSVIQVTA 2819



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E +  Y LSV  +    +    + +++V+I D N++ P F Q  Y+  V
Sbjct: 3269 GILYVNKSLDFETSPKYFLSVECSRKGSSSLSDMTTIVVNITDINEHRPRFPQHLYSTRV 3328

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 3329 LENAIVGDVVLT-------VSATDEDGPVNSAI 3354



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +Y+L   AT+  G      V +H+ D NDN P F      
Sbjct: 3058 LDPHTGDLTTLTALDREKKDVYSLVAKATDGGGQSCQADVTLHVEDVNDNAPRF------ 3111

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S +A     V  NT++     V+ A D D  TNA
Sbjct: 3112 -FPSHSA---VAVFDNTTVKTPVAVVLARDPDQGTNA 3144



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  +IY+  V A +      + S   V V I D N
Sbjct: 2844 ELFAIDSET-----GWITTLQELDCETNQIYHFYVVAYDHGRTIQLSSQVLVEVSITDEN 2898

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G  V T  +L   I  +++
Sbjct: 2899 DNAPRFASEDYRGSVVENSEPGEPVATLKTLDADIAEQNR 2938



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2529 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2588

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2589 SIQSNVSKDSPV 2600



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + +LD NDN P  ++  +   V
Sbjct: 1083 GMIQTLAPLDREFASCYWLTVLAVDRGSIPLSSVTEVYIEVLDVNDNPPQMSRPVFYPTV 1142

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+   VL        + A D DS +   L
Sbjct: 1143 REDAPLHTSVLQ-------LDAWDLDSSSKGKL 1168



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T + +D+     Y L +     +   A  +V++ I+D N
Sbjct: 392 VLKPSSESAAFKLNSRTGLITTTRLMDFHDQAQYQLRI---RTSPGLASTTVVIDIMDCN 448

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P F + +Y G   E  P G  VLT       + A D+D   N  +
Sbjct: 449 NHAPVFNRSSYDGTFDENIPPGTSVLT-------VTATDQDHGENGYI 489



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +        + V    M   +    V +H+ D N + P FTQL
Sbjct: 1495 LDPSSGVLVTVGKLDLGSGPSQHTLTVMVRDQGMPIKRNFVWVSIHVEDGNLHPPRFTQL 1554

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   VS+    GA +L        +RA D D   NA
Sbjct: 1555 HYETRVSDTTVPGAELLQ-------VRAMDGDRGANA 1584



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            LHP  G+L T + LD E    + L VT  +      ++   V+V I D NDN P F+ 
Sbjct: 1183 LHPLTGLLATARQLDRENKDEHILEVTVLDNGEPSLRSTSRVVVRIADVNDNPPVFSH 1240


>gi|348524466|ref|XP_003449744.1| PREDICTED: protocadherin Fat 1 [Oreochromis niloticus]
          Length = 4614

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 60/96 (62%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++T+K LDYE    Y L +  TNMAG  +  ++ +H+ D NDN P F Q  + 
Sbjct: 1713 INPNSGVVVTQKALDYETIAEYKLIIQGTNMAGLASNTTLTIHLKDENDNAPVFDQREFQ 1772

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A I ++VLT  + P VI A D D + NA+L
Sbjct: 1773 GVISESALINSVVLTRENTPFVIHATDADCDQNAML 1808



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+  ++PLD E   +Y L   A++    +  ++C V++ +LD NDN P F    YT  V
Sbjct: 3182 GVITLERPLDREVQSVYELKARASDQGSPRLSSLCQVVISVLDINDNPPVFEHREYTATV 3241

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE   +G  VL        + A  +D++ N  +
Sbjct: 3242 SEDVAVGTQVLR-------VHAASRDADANGEI 3267



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
            F++ K  L P  G L T + LD+E     I  + V   ++   + +  VIV++ D NDN 
Sbjct: 1501 FSLRKFRLDPGTGTLYTTERLDHETMHRHILTVMVRDQDIPVKRNLVRVIVNVDDTNDNA 1560

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+F    Y+G V E+A +G  VL  T+L       DKD  +NA
Sbjct: 1561 PWFIGTPYSGRVFESAAVGTAVLQVTAL-------DKDKGSNA 1596



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLDYEA+  Y +++ AT+        + +V +++ D NDN P F+Q 
Sbjct: 3281 SVDPKTGDVFVIEPLDYEASHEYYITIEATDGGSPPLSDMATVNINLTDVNDNRPVFSQD 3340

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             YT  +SE A +G  V       + + AED D
Sbjct: 3341 VYTAVISEDAELGKTV-------MAVMAEDFD 3365



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G LL   PLD E    Y L++T  ++   +   S +  V ILD NDN+P F Q +Y+  +
Sbjct: 771 GWLLVYSPLDRETADHYTLNITVYDLGIPQKSSSRLLDVKILDANDNSPQFLQESYSVEI 830

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +E+ P+G  ++        + + DKD   N ++
Sbjct: 831 TESTPVGTEIIQ-------VDSTDKDQGDNGIV 856



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++ T  P++ + +  + L V  ++    KA   VIV ++D N+N P F Q +Y 
Sbjct: 412 INPDTGLISTAGPINADISSQFQLDVITSD---KKAAAKVIVDVIDVNNNAPEFQQTSYK 468

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E  PIG  V+T       ++A D D   N  +
Sbjct: 469 ASVDENVPIGTSVVT-------VKATDLDKGENGYV 497



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y L++ A TN    + V SV V+I   D NDNTP F    Y   
Sbjct: 2759 GALKLQKNLDHETTKWYQLTLLAQTNYENFEIVASVNVNIQVKDVNDNTPVFEANPYEAV 2818

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E  P G  V+        ++A D+DS TN  +
Sbjct: 2819 VVENLPSGTQVIQ-------VKAIDQDSGTNGRI 2845



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+   +PLD+E    Y L+V AT+ + GA +   V + + D NDN P F    Y   +S
Sbjct: 2235 GVIHVIQPLDFETHPAYKLNVRATDSLTGAHSEVFVDIILEDVNDNAPVFLSKTYYANIS 2294

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  VL        + A+D D+  N
Sbjct: 2295 EASVIGTSVLQ-------VDAKDSDTGNN 2316



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G L+  +PLD E    YNL+V AT+  G + V + V++ ++D N++ P F++  Y   V 
Sbjct: 1410 GTLIVARPLDAEQKSNYNLTVEATD--GTRTVSTQVLIRVIDTNNHRPEFSENVYVVNVP 1467

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E  P G  VL        I A D+D E N L
Sbjct: 1468 EDKPAGTEVLQ-------ISAVDRD-EKNKL 1490



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KPLD E    Y L++TA++ +  AKAV  V V +LD NDN+P   +  Y+  V E +P 
Sbjct: 2984 RKPLDREEKDNYLLNITASDGIFTAKAV--VEVKVLDANDNSPVCDKSVYSESVPEDSPA 3041

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G L+L        + A D D  +NA +
Sbjct: 3042 GRLILQ-------VSATDADIRSNAQI 3061



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G L   + LDYE  ++YNL+  A +        + C + V ++D N+N   P F      
Sbjct: 980  GALRIVQNLDYETKQVYNLTAKAKDKGKPISLSSTCFIEVDVVDVNENLYRPMFRSFVEK 1039

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            G++ E A IG  V+T       + AED+D
Sbjct: 1040 GFIKEDAVIGTSVMT-------VTAEDED 1061



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G L   + LD E T  Y L+V A++        S +++I   D NDN P F+Q N
Sbjct: 3387 IDPVRGELKVARQLDRERTSGYTLTVVASDNGAPPLSSSAMINIDISDINDNPPLFSQAN 3446

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  + E  P G  VL
Sbjct: 3447 YSLIIQENRPAGTSVL 3462



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 12/94 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++ T + LD+E  + + L V   +  G  A+ S   V + + D NDN P FT+  Y   
Sbjct: 2341 GIISTAQVLDHEEIQQHKLRVRVVD-GGVPALSSDIIVTIDVTDLNDNAPVFTEHTYRTT 2399

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
            +SE AP G  V         ++A D D S+TN L
Sbjct: 2400 ISELAPRGHFVSQ-------VQASDPDSSDTNKL 2426



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFT 69
            A++   G + T K LD E T  Y +S+ AT+  G K       +V V + D NDN P FT
Sbjct: 2863 AVNSETGWVTTLKELDREKTDKYKISILATDQ-GEKVQLITGTTVEVTVGDVNDNPPRFT 2921

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
               Y G VSE  P  + V+       ++   D DSE
Sbjct: 2922 AEIYKGTVSEDDPPPSGVIA------ILSTTDDDSE 2951



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L T +PLD E    Y+  V A +  G    C   +HI+  D NDN P F+   YT  V
Sbjct: 3080 GELKTSQPLDREEKDEYSFKVRAVD--GGGRYCESDIHIIVEDVNDNPPQFSSDPYTITV 3137

Query: 78   SEAAPIGALV 87
             E    G  V
Sbjct: 3138 FENTETGTFV 3147



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL--DRNDNTPYFT 69
           A++   GV+   KPLD E    Y L ++A + A    + V +V + I   D NDN P F 
Sbjct: 868 AINENTGVVTVTKPLDRELHPFYVLKISARDQAVNEPQLVSTVPLKITLEDVNDNPPKFF 927

Query: 70  QLNYTGYVSEAAPIGALVL 88
             NY   V E  PIG +++
Sbjct: 928 PPNYRVKVREDLPIGTVIM 946



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LDYE   RIYNL V A++       +   SVI+ + + NDN P F  ++   
Sbjct: 516 GVISTSEVLDYELMPRIYNLKVRASDWGSPYRREVEASVIITLNNLNDNKPLFENVDCEV 575

Query: 76  YVSEAAPIGALVLTNTSL 93
            V     +G  + T +++
Sbjct: 576 TVPRDHGVGEQITTASAI 593



 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIV 56
            ++ I++P  H  +      G +    PLDYE   ++  +V   ++      A+   +V +
Sbjct: 1809 IYQIVEPFAHNYFAIDSSTGAIRITSPLDYEQRSVFRFTVQVHDLGMPRLFAETTANVTI 1868

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             ++D ND  P  +Q  Y   V      G  V+        + A D DS  N+ L
Sbjct: 1869 EVIDVNDCAPVLSQEQYEATVIVPTYKGVEVIQ-------VSATDADSGPNSKL 1915


>gi|350594501|ref|XP_003134187.2| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2 [Sus scrofa]
          Length = 3938

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 60/91 (65%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V+I+D NDN P F++  + G VSE
Sbjct: 1654 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVLVYIIDENDNAPMFSKSTFVGQVSE 1713

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + PLVI A D D+E N+LL
Sbjct: 1714 AAPLNSMIMDENNNPLVIHASDGDTEANSLL 1744



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 50/91 (54%), Gaps = 12/91 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            +  +K LD E    Y L VTA++    K   SV+V I  LD NDN+P  +QL YTG VSE
Sbjct: 2912 IFARKTLDREHMAKYLLRVTASD---GKFQASVLVEIFVLDLNDNSPQCSQLLYTGKVSE 2968

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P+G  +L        I A D DS+TNA +
Sbjct: 2969 DVPLGHFILK-------ISATDLDSDTNAQI 2992



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            A+HP  G L   K LD+E    Y+L + AT+           V + ++D NDN P F QL
Sbjct: 3316 AIHPKKGELQVAKTLDWEQISSYSLRLRATDNGQPPLHEDTDVAIQVVDVNDNPPRFFQL 3375

Query: 72   NYTGYVSEAAPIGALVL 88
            NY+  V E +P G+ VL
Sbjct: 3376 NYSTSVQENSPTGSKVL 3392



 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 8   FAILKP-----ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P     ++ P  G++ T KP+DYE   RIY   V A++       +   SV + +
Sbjct: 494 YSITRPNAVPFSIDPYLGIISTSKPMDYELMNRIYTFRVRASDWGSPFRREKEVSVSLRL 553

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            + NDN P F ++N +G + +  P+G  V+T +++ +
Sbjct: 554 KNLNDNKPMFEEVNCSGSIHKDWPVGKAVMTVSAIDM 590



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2167 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSVS 2226

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2227 EGLPAQTPVIH-------LLASDQDSGQN 2248



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++    K+   V+ V++ D NDN P F    Y   V
Sbjct: 769 GLLTIASPLDYEATSFYILNVTVYDLGTPQKSSWKVLTVNVEDWNDNAPRFPPGGYQVTV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  V         ++A+D DSE N 
Sbjct: 829 SEDTEVGTTVAQ-------LKAKDADSEDNG 852



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E +  Y LS+  +    +    + +++V++ D N++ P F+Q  Y+  V
Sbjct: 3217 GILYVNKSLDFETSPKYFLSIECSRKGSSSLSDMTTIVVNVTDINEHRPRFSQDLYSTRV 3276

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +G LVLT       + A D+D   N+ +
Sbjct: 3277 SENAIVGDLVLT-------VSATDEDGPLNSAI 3302



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFT 69
            ++P  G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P F 
Sbjct: 973  VNPMTGALSLERELDFERRAGYNLSLWASDSGRPIARRTLCHVEVIVLDVNENLHPPRFA 1032

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               + G V E +P G  V        V+ A+D DS  +  L
Sbjct: 1033 SFVHQGQVQENSPSGTSV-------TVVAAQDDDSGLDGEL 1066



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2692 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTYLGSLVSVNIQVKDVNDNRPIFEADPYKAV 2751

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2752 LTENMPVGTSVIQVTA 2767



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2273 GEMSTVQELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2332

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2333 SELATCGHLVLK-------VQALDPDSGDTSRLE 2359



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L+T   LD E   +Y+L   AT+  G      V +H+ D NDN P F      
Sbjct: 3006 LDPHTGELITLTALDREKKDVYSLVAKATDGGGQSCQADVTLHVEDVNDNAPRF------ 3059

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D  TNA
Sbjct: 3060 -FPSHCA---VAVFDNTTVKTPVAVVLARDPDQGTNA 3092



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E ++IY   V A +      + S   V V I D N
Sbjct: 2792 ELFAIDSET-----GWITTLQELDCETSQIYRFYVVAHDHGQTIQLSSQVLVEVSITDEN 2846

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G  V T  +L   I  +++
Sbjct: 2847 DNAPRFASEDYRGSVVENSEPGEPVATLKTLDADIAEQNR 2886



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++H   G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  ++ 
Sbjct: 1080 SIHQDTGMIQTVAPLDREFMSCYWLTVQAVDRGSVPLSSVTEVYIEVTDVNDNPPQMSRP 1139

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +   V E AP+   VL        + A D DS +   L
Sbjct: 1140 VFYPSVREDAPLHTSVLQ-------LDARDPDSSSKGKL 1171



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2477 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2536

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2537 SIQSNVSKDSPV 2548



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     + + A  +V++ I+D N
Sbjct: 395 VLKPSSEGAGFKLNARTGLITTTKLVDFHDRAHYQLEI---RTSPSLASTTVVIDIMDCN 451

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F++ +Y     E  P G  VLT       I A DKD   N 
Sbjct: 452 NHAPMFSKSSYESTFDENIPPGTSVLT-------ITATDKDHGENG 490



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G+L T + LD E    + L VT  +      ++   V+V ILD NDN P F+ 
Sbjct: 1185 AIHPLTGLLSTARQLDRENKDEHILEVTVLDNGEPTLRSTSRVVVRILDVNDNPPVFSH 1243



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y+L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYSLIIQATEKTLEFEALTHVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|71725377|ref|NP_001025159.1| protocadherin Fat 2 precursor [Mus musculus]
 gi|81888837|sp|Q5F226.1|FAT2_MOUSE RecName: Full=Protocadherin Fat 2; AltName: Full=FAT tumor suppressor
            homolog 2; Flags: Precursor
 gi|148701548|gb|EDL33495.1| mCG1445 [Mus musculus]
          Length = 4351

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAG       +V+I+D NDN P F +  + G++SE
Sbjct: 1710 GLISTQKRLDHEKVSSYQLKIRGSNMAGVFTEVVALVYIIDENDNAPAFLKSTFVGHISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ +L+L   + PLVIRA D D E N+LL
Sbjct: 1770 AAPLHSLILGEDNSPLVIRASDSDQEANSLL 1800



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G L   K LD+E T  Y+L + AT+           V V ++D NDN P F QLN
Sbjct: 3373 IDPKKGKLQVAKALDWEQTPSYSLRIRATDSGQPPLHEDTEVAVEVVDVNDNPPRFFQLN 3432

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG  VL
Sbjct: 3433 YSTAVQENSPIGIKVL 3448



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 12/99 (12%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQL 71
            P  G L  +K LD+E    YNLS  A++       + +C V V ++D N+N  +P+F+  
Sbjct: 976  PMTGALSLEKELDFERRAGYNLSFWASDSGRPLARRTLCHVEVLVMDVNENLHSPHFSSF 1035

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1036 VYQGQVQENSPAGTQV-------MVVTAQDDDSGLDGEL 1067



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL Y+  VS
Sbjct: 2223 GVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYSTSVS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E +P    V+        + A D+DS  N
Sbjct: 2283 EGSPAQTPVIQ-------LLASDQDSGQN 2304



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            + ++K LD E    Y L +TA++    +A   V V +LD NDN+P  +QL YTG V E  
Sbjct: 2968 ITSRKTLDREHIAKYLLRITASD-GKFQASVPVEVFVLDINDNSPQCSQLLYTGKVREDV 3026

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
              G  +L        + A D D +TNA +
Sbjct: 3027 TPGHFILK-------VSAIDVDMDTNAQI 3048



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + + + V AT+           V+V++ D NDN P F +  Y   V
Sbjct: 2329 GEMFTIQELDYEAHQHFRVKVRATDRGDPPLTGETLVVVNVSDINDNPPEFREPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G LVL   +L
Sbjct: 2389 SELATCGHLVLKVQAL 2404



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T KP+D+     Y L V  +     +A  +VI+ I+D N++ P F + +Y G + E
Sbjct: 413 GLITTTKPVDFHEQNQYQLHVKTSL---GQATTTVIIDIVDCNNHAPVFNRSSYEGTLDE 469

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G  VLT       + A D+D   N 
Sbjct: 470 NIPPGTSVLT-------VTATDQDHGDNG 491



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  GV+ T K +DYE   RIY   V A++       +   SV + + + NDN P F 
Sbjct: 506 SIDPYLGVISTTKSMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPL 95
           ++N T  + + AP+G  ++  +++ +
Sbjct: 566 EVNCTVSLRQDAPVGKSIMAVSAIDM 591



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 17/109 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIV 56
            ++ IL+P       + P  G L     LDYE T ++  S+      T +  A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTITSELDYETTPLFQFSIYVHDQGTPILFAPRSARVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            H+ D ND+ P F++  Y   V E    G  +LT       ++AED DS+
Sbjct: 1861 HVRDVNDSPPRFSEQIYEVAVVEPIHPGMELLT-------VQAEDNDSK 1902



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      V +HI D NDN P F      
Sbjct: 3062 LDPHTGELTTLSVLDRERKDVYNLVAKATDGGGQSCQAEVTLHIEDVNDNAPRF------ 3115

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3116 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGVNA 3148



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  KK +D+E+T+ Y + + A      T++    ++ SV + + D NDN P F    Y
Sbjct: 2748 GVLKVKKAMDHESTKWYQIDLMAHCPHEDTDLV---SLVSVNIQVEDVNDNRPVFEADPY 2804

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +++E  P G  V+        + A D+D+ ++ 
Sbjct: 2805 KAFLTENMPGGTTVIQ-------VTANDQDTGSDG 2832



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L T  PLD E T  Y L+V A +       AV  V + + D NDN P  ++  +   V
Sbjct: 1087 GMLETLAPLDREFTPYYWLTVLAVDRGSVPLSAVTEVYIEVTDINDNIPSMSRPVFYPSV 1146

Query: 78   SEAAPIGALVL 88
             E AP+G  VL
Sbjct: 1147 KEDAPLGTSVL 1157



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            QLFA+   +     G + T + LD E  + Y   V A +      + S   V V I D N
Sbjct: 2848 QLFAVDSES-----GWITTLQELDCETQQTYRFYVVAFDHGQTIQLSSQALVEVSITDEN 2902

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E    G LV T  +L   I  +++
Sbjct: 2903 DNPPRFASEDYRGSVVENNEPGELVATLKTLDADISEQNR 2942



 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G+L T K LD E    Y L VT  +      ++   V+V +LD NDN+P F+   
Sbjct: 1187 VHPFTGLLSTAKQLDRENKDEYVLEVTVQDNGDPPLRSTSRVVVCVLDVNDNSPMFSHKL 1246

Query: 73   YTGYVSE 79
            +   +SE
Sbjct: 1247 FNVRLSE 1253



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + + A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PSGQITTLQKLDRENSTERVIAIKIMARDGGGKVAFCTVKIILTDENDNAPQFKASGYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS  +PI
Sbjct: 2593 SIPSNVSRDSPI 2604



 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E    Y LS+  +  + +    V ++++++ D N++ P FT   YT  V
Sbjct: 3273 GILYVNGSLDFETNPKYFLSIECSRKSSSSLSDVTTIVINVTDVNEHHPRFTHDLYTVRV 3332

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G ++LT       + A D D   N+++
Sbjct: 3333 LENAIVGDVILT-------VSASDDDGPVNSVI 3358



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 30/65 (46%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKP DY+A   Y+L VTA +         V VH+  RN + P F    Y 
Sbjct: 2118 IDPYVGDISLKKPFDYQALNKYHLRVTARDAGTPPLQTEVEVHVTVRNKSNPLFQSPYYK 2177

Query: 75   GYVSE 79
              V E
Sbjct: 2178 VKVPE 2182



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L V A++ +   +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLVVQASDKSLEFEALTQVVVHILDQNDLKPLFSPPSYRFTISEDRPL 163



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L     LDYE T  Y L+VT  ++    K+   ++ V + D ND  P F    Y   +
Sbjct: 770 GLLTVAAALDYETTSFYVLNVTVYDLGTPPKSSWKLLTVTVKDWNDKPPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  V         ++  D DSE N 
Sbjct: 830 SEDTEVGTTVAE-------LKTRDTDSEDNG 853



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +     I  + V    M   +    V +H+ D N ++P+FTQ 
Sbjct: 1499 LDPSSGVLVTVGTLDLHSGPSQHILTVMVRDQEMPIKRNFVWVTIHVEDGNLHSPHFTQP 1558

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   V +    G  +L        +RA D D   NA
Sbjct: 1559 RYEANVPDTTTPGTELLQ-------VRAVDADRGANA 1588


>gi|301770757|ref|XP_002920796.1| PREDICTED: protocadherin Fat 2-like [Ailuropoda melanoleuca]
 gi|281339749|gb|EFB15333.1| hypothetical protein PANDA_009583 [Ailuropoda melanoleuca]
          Length = 4351

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 59/91 (64%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K +D+E    Y L +  +NMAGA      +V+I+D NDN P F + N+ G VSE
Sbjct: 1710 GLISTQKKMDHEKISSYQLKIRGSNMAGAFTDVMALVYIIDENDNAPMFLKSNFVGQVSE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++  T+ PLVIRA D D   N+LL
Sbjct: 1770 AAPLYSMIMDETNNPLVIRASDSDEGANSLL 1800



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++HP  G L   K LD+E T  Y+L + AT+           + + ++D NDN P F QL
Sbjct: 3372 SVHPKKGELQVAKALDWEQTPTYSLRLRATDNGRPPLHEDTDIAIQVVDVNDNPPRFFQL 3431

Query: 72   NYTGYVSEAAPIGALVL 88
            NY+  V E +PIG+ VL
Sbjct: 3432 NYSTSVQENSPIGSKVL 3448



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   SV + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNKPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           Q+N TG + E  P+G  V+T +++
Sbjct: 566 QVNCTGSIREDWPVGKSVMTVSAI 589



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            + ++K LD E    Y L +TA++    K   SV+V I  LD NDN+P  +QL YTG VSE
Sbjct: 2968 IFSRKTLDREHMAKYLLRITASD---GKFQASVLVEIFVLDVNDNSPQCSQLLYTGKVSE 3024

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G  +L        + A D DS+TNA +
Sbjct: 3025 DTSPGHFILK-------VSATDLDSDTNAQI 3048



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGQN 2304



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E    Y+L   AT+  G      VI+H+ D NDN P+F      
Sbjct: 3062 LDPHTGELTTLTPLDREKKDTYSLVAKATDGGGQSCQADVILHVEDVNDNAPHF------ 3115

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D  TNA
Sbjct: 3116 -FPSHCA---VAVFDNTTVKTPVAVVLARDPDQGTNA 3148



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATSFYILNVTVYDLGTPRKSSWKLLTVNVKDWNDNAPRFPPGGYQITI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +         ++A+D DS+ N 
Sbjct: 830 SEDTEVGTTIAE-------LKAKDADSDDNG 853



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P F    + 
Sbjct: 979  GALSLERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPRFVSFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAAHDDDSGLDGEL 1067



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2748 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTHLVSLVSVNIQVKDVNDNRPVFEADPYKAV 2807

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2808 LTENMPVGTSVIQVTA 2823



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYETQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQALDPDSRDTSHLE 2415



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E +  + LS+  +    +    + +++V+I D N++ P F Q  Y+  V
Sbjct: 3273 GILYVNKSLDFETSPKFFLSIECSRKGSSSLSDMTTIVVNITDVNEHRPRFLQDLYSTRV 3332

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 3333 LENAIVGDVVLT-------VSATDEDGPANSAI 3358



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2848 ELFAIDSET-----GWITTLQELDCETHQTYHFYVVAYDHGRTIQLSSSVLVEVSITDEN 2902

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G LV+T  +L   I  +++
Sbjct: 2903 DNAPRFASEDYRGSVVENSEPGELVVTLQTLDADISEQNR 2942



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L+    +DYE+   +  SV   +       A     VI+
Sbjct: 1801 VYEILEPEALKFFKIDPSMGTLIIISEMDYESMPSFQFSVYVHDQGNPILFASRPVQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +I D ND+ P F+   Y   + +    G  +L       ++RA D DSE N
Sbjct: 1861 NIRDVNDSPPRFSDRAYEVAIVKPIHRGMELL-------IVRASDDDSEVN 1904



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +   A  +V+++I+D N
Sbjct: 396 VLKPSSESAGFRLNARTGLITTTKLIDFHDRAHYQLHI---RTSPGLASTTVVINIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G   E  P G  VLT       + A D+D   N 
Sbjct: 453 NHAPIFNRSSYEGTFDENIPPGTSVLT-------VTATDQDHGENG 491



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPLTGLLSTARQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVRILDVNDNPPVFSH 1244



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVQDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|431918060|gb|ELK17288.1| Protocadherin Fat 2 [Pteropus alecto]
          Length = 4424

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 59/91 (64%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA    +V+V+I+D NDN P F +  + G +SE
Sbjct: 1784 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVTVLVYIIDENDNAPMFLKSTFVGQISE 1843

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VIRA D D E N+LL
Sbjct: 1844 AAPLYSMIMDEKNNPFVIRASDSDKEANSLL 1874



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y+L + AT+           + + ++D NDN P F QLN
Sbjct: 3447 IHPKKGELQVAKALDWEQTSSYSLRLRATDSGRPPLHEDIDIAIQVVDVNDNPPRFFQLN 3506

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3507 YSTSVQENSPIGSKVL 3522



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 8   FAILKP-----ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P     ++ P  G++ T KP+DYE   RIY   V A++       +   SV + +
Sbjct: 495 YSIARPKDVPFSVDPYLGIISTTKPMDYELMKRIYTFQVRASDWGSPFRQEKEVSVSLRL 554

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            + NDN P F Q+N TG + E  P+   ++T +++
Sbjct: 555 NNLNDNKPMFEQVNCTGSIREDWPVEKSIMTVSAI 589



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +V  V V + D NDN P F+QL YT  VS
Sbjct: 2297 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSVAIVEVLVEDVNDNPPTFSQLVYTTSVS 2356

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2357 EGLPAQTPVIQ-------LLASDQDSGQN 2378



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            + ++K LD E    Y L +TA++    K   +VIV I  LD NDN+P  +QL YTG VSE
Sbjct: 3042 IFSRKTLDREDMAKYLLRITASD---GKFQVAVIVEIFVLDINDNSPQCSQLLYTGKVSE 3098

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G  +L        + A D DS+TNA +
Sbjct: 3099 DIAPGHFILK-------VSATDLDSDTNAQI 3122



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T K LDYEA + +++ V A +           V+V + D NDN P F Q  Y   V
Sbjct: 2403 GEMSTVKELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVGVSDINDNPPEFRQPQYEANV 2462

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G LVL   +L
Sbjct: 2463 SELATCGHLVLKVQAL 2478



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  +K LD+E    YNLS+ A++       + +C V V +LD N+N   P F    + 
Sbjct: 979  GALSLEKELDFERQAGYNLSLWASDSWRPLSRRTLCHVEVIVLDVNENLHPPRFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A D DS  +  L
Sbjct: 1039 GQVQENSPPGTQV-------MVVAAHDDDSGLDGEL 1067



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYE T  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYETTSFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPIFPPGGYQVTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +         ++A+D DS+ N 
Sbjct: 830 SEDIEVGTTIAE-------LKAKDADSDDNG 853



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K +DYE+T+ Y + + A    N     ++ +V + + D NDN P F    Y   
Sbjct: 2822 GALKVRKAMDYESTKWYQIDLMAHCPHNDTYLVSLVTVNIQVKDVNDNRPIFEADPYKAV 2881

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2882 LTENMPVGTSVIQVTA 2897



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   IY+L   AT+  G      V +H+ D NDN P F
Sbjct: 3136 LDPHTGELTTLTALDRERKDIYSLVAKATDGGGQSCQADVTLHVEDVNDNAPRF 3189



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       LH   G++ T K +D+     Y L +     +   A  +V++ I+D N
Sbjct: 396 VLKPSSGSAGFKLHARSGLITTTKLMDFHDRAHYQLHI---RTSPGLASTTVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G   E  P G  VLT       + A D+D   N 
Sbjct: 453 NHAPIFNRSSYDGTFDENIPPGTTVLT-------VTATDRDHGENG 491



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   + LD+E +  Y LS+  +    +    + +++V+I D N++ P F +  Y+  V
Sbjct: 3347 GVLYVNRSLDFETSPKYFLSIECSRKGSSSLSDMTTIVVNITDINEHRPRFPKDLYSVRV 3406

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 3407 LENAFVGDVVLT-------VSATDEDGPLNSAI 3432



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2607 PLGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNAPQFKASEYTV 2666

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2667 SVQSNVSKDSPV 2678



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       AV  V + ++D NDN P  ++  +   V
Sbjct: 1087 GLIQTLTPLDREFVSCYWLTVLAVDRGSIPLSAVTEVYIEVMDVNDNPPRMSRPVFYPSV 1146

Query: 78   SEAAPIGALVL 88
             E AP+   VL
Sbjct: 1147 REDAPLHTSVL 1157



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L V AT+     +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVQDSYTLIVQATDKTLEFEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2922 ELFAIDSET-----GWITTLQELDCETRQTYHFYVMAYDNGQTIQLSSQVLVEVSITDEN 2976

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLT 89
            DN P F   +Y G V E +  G  V T
Sbjct: 2977 DNAPQFASEDYRGSVVENSEPGEPVAT 3003



 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LD      Y L+V A +    +   + +VI+H+     + P F++  Y   +
Sbjct: 1684 GIITLAEKLDQAKHARYTLTVKAEDQGSPRWHDLATVIIHVYPSESSAPIFSKAEYFVEI 1743

Query: 78   SEAAPIGALVL-----TNTSLPLVIRAEDKD 103
             E+ PIG+ +L     +++ +   +R  +KD
Sbjct: 1744 PESIPIGSPILLVSATSSSEVTFELREGNKD 1774


>gi|326671264|ref|XP_003199405.1| PREDICTED: protocadherin Fat 3-like, partial [Danio rerio]
          Length = 3394

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+K  D+E T  Y L + A NMAG  +  +V + ++D NDN P F  L YTG +SE
Sbjct: 1718 GVITTQKDFDFEMTSSYILVIQAVNMAGIASSVTVCIQVVDENDNPPVFQDLTYTGTISE 1777

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AA + ++V+T    PLVI A D D   NALL
Sbjct: 1778 AAHVNSVVMTEDGKPLVIEATDADKNHNALL 1808



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G+LLT + LDYE T  ++  V AT+       C V V +   D NDN P F Q  Y  +V
Sbjct: 2339 GLLLTARLLDYELTSSFSFIVRATDNGSPSQNCEVTVTVFLSDVNDNPPSFNQPLYEAFV 2398

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G +V         I+A D DS
Sbjct: 2399 SELAPRGHIV-------TCIQASDLDS 2418



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+L    PLDYE T IY+  V AT    +  + +V  V V +LD NDN P F   +Y   
Sbjct: 2758 GLLRLVSPLDYELTNIYHFKVAATMRQALVESMSVVDVEVKVLDVNDNKPLFETSSYVAM 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            V E  P G  V+        +RA D D  +N  ++ S
Sbjct: 2818 VMEGMPRGTRVIQ-------VRALDPDWGSNGQVNYS 2847



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  +PLD E   +YN++V  T+     A   + + + D NDNTP F++  Y   VSE
Sbjct: 1410 GTIVIARPLDAETQSLYNMTVQVTDGTNT-ATTQIYIKVSDSNDNTPIFSEHTYEVLVSE 1468

Query: 80   AAPIGALVLTNTSLPLVIRAEDKD 103
              P    VL        +RA D+D
Sbjct: 1469 DTPADTEVLR-------VRARDRD 1485



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T + LD E    R   L+V A +  G  + C+V V + D NDN P F  + Y   +
Sbjct: 2545 GLITTAQKLDRENPINRDIVLTVMALDGGGRASFCTVRVILADENDNAPRFRAMEYRVSI 2604

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                P+G+LV         I+A+D DS  N 
Sbjct: 2605 KANVPMGSLVTQ-------IQAQDPDSGDNG 2628



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            A  P  G++     LDYE  + + L+V A +      +A   V + +LD NDN+P F++ 
Sbjct: 3157 ANDPDEGIISVADDLDYEICKDFFLNVEAFDGGSPPLRAAIIVTIELLDVNDNSPSFSEE 3216

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   +SE   IG  V         + AED DS+ N  +
Sbjct: 3217 IYNVLISEDIAIGETVTR-------LFAEDLDSQINGRI 3248



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV+ T +     +  ++NL V  T ++G  A   V + + D N+N+P FT   Y 
Sbjct: 420 INPLTGVIATAQEFTTLSQELFNLEVMET-VSGMTA--KVQIKVEDANNNSPIFTSTFYE 476

Query: 75  GYVSEAAPIGALVLT 89
            +V+E+ PIG ++LT
Sbjct: 477 VFVNESIPIGTVILT 491



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  GV+ T   LDYEA    I  + V        + +  +IV + D N+  P FTQ N
Sbjct: 1508 INPGTGVMYTADRLDYEARTQHILTIMVKDQEFPYYRDLARIIVTLEDANNQPPIFTQTN 1567

Query: 73   YTGYVSEAAPIGALVL 88
            Y   V E+AP G   L
Sbjct: 1568 YDSTVFESAPPGTSAL 1583



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRND--NTPYFTQLNYT 74
            G +   K LDYE  + YNLS+ A ++      ++   + V I+D N+  N PYF++    
Sbjct: 987  GAIKVAKDLDYEKQQFYNLSLVAEDLGFPVKLRSESYLEVEIIDVNENLNEPYFSEFAVR 1046

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            G V E +  G  VL        + A+D D   + ++  S N
Sbjct: 1047 GSVKENSRHGTSVLQ-------VTAQDDDKGRDGVIRYSIN 1080



 Score = 41.6 bits (96), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G+L   K LD E    Y+LSV A + +G+ A  + +   + I D NDN P F+  
Sbjct: 3263 IDPVTGLLKVNKALDRETVSSYSLSVQAFD-SGSPAKSTTVNVNIEIADVNDNPPLFSPA 3321

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N +  +    P G  +LT       +   DKDS  N 
Sbjct: 3322 NASAVIQLNKPAGRTILT-------LSVSDKDSTRNG 3351



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T   LD+E    Y  +V A+++    ++ S   V V I D NDN P F +  Y G 
Sbjct: 2875 GWITTLGDLDHEICPSYTFNVVASDLGEGVSLSSTAVVTVAIADVNDNPPTFEREYYRGA 2934

Query: 77   VSEAAPIGALV 87
            V E+ P+G +V
Sbjct: 2935 VRESDPLGEVV 2945



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G L+T K LD+E++   Y  +V A++       ++  +V V +L+ NDN P F +++  G
Sbjct: 524 GELMTSKELDFESSLETYVFAVRASDWGSPYRRESEVNVTVQVLNINDNQPLFERVSCKG 583

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            +    P+G  ++  +++ +
Sbjct: 584 AIGRDFPVGQTIIIMSAIDI 603



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++   +PLD E +  Y L++T  ++      +   + V+I D NDN+P F+  +YT  V
Sbjct: 778 GLIYIYQPLDRERSDRYLLNITVYDLGIPQRSSWRLLTVNIEDVNDNSPEFSLESYTAVV 837

Query: 78  SEAAPIGALVLTNTS 92
           +E A IG  V+  T+
Sbjct: 838 TENAAIGTEVIQVTA 852



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           L+ E    Y L+V AT   G +A  +V V I+D ND  P F+  +Y   + E+ P+G+ V
Sbjct: 117 LNREVQDNYTLTVRATAGGGLEASVTVNVQIMDMNDLRPLFSPTSYAINIPESTPLGSNV 176



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLDYE T  Y L++ +T+ + GA++   V + ++D NDN P F   +Y+  + 
Sbjct: 2233 GVISVIYPLDYETTSNYRLTIRSTDTLTGARSEVDVDIVVVDVNDNAPVFRNTSYSTTLP 2292

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   IG+ V+        + A DKDSE N ++
Sbjct: 2293 ENTMIGSSVIR-------LLATDKDSEKNNVI 2317



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNY 73
            T + LD E    + L VT  +  G   ++   VIVH+ D NDNTP F +  Y
Sbjct: 1206 TSRKLDREQQAEHFLEVTVMDGGGIFRQSTVWVIVHVQDENDNTPEFKESIY 1257



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T   LD EA   Y L+V AT+       A   V + + D NDN P  ++  Y  YV
Sbjct: 1095 GMIYTADSLDCEAQDSYWLTVYATDRGVVPLSASIEVFIQVEDVNDNAPLTSEPIYHSYV 1154

Query: 78   SEAAP 82
             E +P
Sbjct: 1155 MENSP 1159



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 31/68 (45%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T   LD E T  Y L   AT+  G      + + ILD NDN P F    +   V E
Sbjct: 3085 GELKTAALLDRERTAGYMLIAQATDGGGLFCRSEISLTILDVNDNAPSFAFTRFMASVYE 3144

Query: 80   AAPIGALV 87
            +A   AL+
Sbjct: 3145 SAAPKALL 3152



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 14   ALHPPYG--VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            AL P  G   +  K+PLD E    Y L++TA++      +  V V ++D NDN+P   Q 
Sbjct: 2976 ALAPIQGEWKVYVKRPLDREEQDQYLLNITASDGLFVTRI-GVEVTVMDANDNSPICNQA 3034

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y     E       V  NT++ L + A D D+  NA
Sbjct: 3035 EYKASFPED------VAVNTAI-LKVGATDLDTGANA 3064


>gi|334330616|ref|XP_001369584.2| PREDICTED: protocadherin Fat 3 [Monodelphis domestica]
          Length = 4557

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 60/96 (62%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+  +K LDYE    Y L + ATNMAG  +  +V + I+D NDN P F    Y+
Sbjct: 1716 INPYSGVITNQKALDYERISSYQLIIQATNMAGMASNATVNIQIVDENDNPPIFLFSQYS 1775

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G +SE API ++V +  + PLVIRA D DS  NALL
Sbjct: 1776 GSLSEVAPINSIVRSLGNNPLVIRATDADSNQNALL 1811



 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE T ++ L+V A++ + GA+A  +V + + D NDN P F Q  Y   +S
Sbjct: 2238 GVLNVISPLDYEVTPVFKLTVRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNATLS 2297

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            EA+ IG  VL        + A D DSE N ++
Sbjct: 2298 EASLIGTPVLQ-------VVASDADSENNKIV 2322



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E   IYN+SV  T+     AV  V + +LD NDN P F+Q +Y   +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPSYEVTISE 1471

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
                   VL +T + L + A D+D +
Sbjct: 1472 D------VLPDTEI-LQVEATDRDEK 1490



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PLD     +Y L+V+  N  G      V + + D ND+TP F Q +Y 
Sbjct: 422 INPRSGLIVTAQPLDVIKKEVYELAVS--NKEG-DLKAQVTIGLEDANDHTPEFQQSSYE 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VL+       + A DKD   N  +
Sbjct: 479 AFVNESVPMGTSVLS-------VSASDKDKGENGYI 507



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++LT + LD+E+ +   L V AT+         V+V+I   D NDN P F QL Y  YV
Sbjct: 2344 GLILTARMLDHESVQQSTLKVRATDNGFPPMSSEVLVNIYVTDMNDNPPVFNQLIYESYV 2403

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
            A+ P  G++  KK LD E    Y+L + AT+ +G  A+ S +   + I D NDN P FT 
Sbjct: 3390 AVDPVLGLVKVKKKLDRERVSGYSLLIQATD-SGVPAMSSTVTVNIDISDVNDNGPVFTP 3448

Query: 71   LNYTGYVSEAAPIGALVL 88
             NYT  + E  P+G  +L
Sbjct: 3449 ANYTAVIQENKPVGTSIL 3466



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   + LD+EA    I N+ V        + +  VIV++ D ND++PYFT   Y   V
Sbjct: 1516 GVLYIAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSPYFTSPLYEASV 1575

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E+A +G+ VL  T+L       DKD   NA L
Sbjct: 1576 FESAALGSAVLQVTAL-------DKDRGENAEL 1601



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+++ ++PLD E    YN+SV A++ +  KA+ S   V + +LD NDN P F + +Y   
Sbjct: 3185 GIIILEQPLDRELQSSYNISVKASDQSILKALSSLATVTITVLDINDNPPVFERRDYLVT 3244

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V       L + A  KD  TNA
Sbjct: 3245 VPEDTTPGTEV-------LAVFATSKDIGTNA 3269



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 26   KPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            + LDYE  + + L V A +       AV +V +++ D NDN P F Q  Y+  +SE A I
Sbjct: 3297 EALDYEMCKDFYLVVEAKDGGTPALSAVATVNINLTDVNDNAPKFNQEVYSAVISEDASI 3356

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  V       +V+ AED DS  N  +
Sbjct: 3357 GDSV-------IVLIAEDVDSPPNGQI 3376



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD+E    +  SV A+++  A ++ S   V V + D NDN P F    Y  Y
Sbjct: 2873 GWISTLKDLDHERDPTFTFSVLASDLGEAFSLSSTTLVSVTVTDINDNAPVFGHEVYREY 2932

Query: 77   VSEAAPIGALV 87
            V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   K LD E T  ++  V AT   +         + + +LD NDN P+F   +Y   
Sbjct: 2763 GTIKLDKRLDREMTPAFHFKVAATIPLDKVDIVFTVDIEIKVLDLNDNKPFFDASSYEAI 2822

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  ++        ++A DKD   N 
Sbjct: 2823 IMEGMPVGTRLIQ-------VKAIDKDWGANG 2847



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 10/80 (12%)

Query: 25   KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            K+PLD E   IY L++TAT+ +   +A+  V V   D NDN+P   Q+ YT    E  P 
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAMVEVTV--TDVNDNSPVCDQVAYTALFPEDIPS 3044

Query: 84   GALVLTNTSLPLVIRAEDKD 103
              ++L        I A+D D
Sbjct: 3045 NKIILK-------ISAKDAD 3057



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREQTDLYLLNITIYDLGKPQKSSWRLLTINVEDANDNRPIFLQESYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E++ IG  ++        + A DKD
Sbjct: 841 LESSSIGTEIIQ-------VEARDKD 859



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T + LD E+    ++S+   A +  G    C+V V ++D NDN P F  + Y   V
Sbjct: 2550 GQVITTERLDRESPMEGDISIFLRALDGGGRTTFCTVRVIVVDENDNAPQFLTVEYRASV 2609

Query: 78   SEAAPIGALV 87
                  G LV
Sbjct: 2610 RADVGRGHLV 2619



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 33/73 (45%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +YNL   AT+  G      + + + D NDN P F+  +Y 
Sbjct: 3078 LDPESGELKTLALLDREKIPVYNLIARATDGGGRFCQSDIRLILEDVNDNPPIFSSDHYN 3137

Query: 75   GYVSEAAPIGALV 87
              + E     AL+
Sbjct: 3138 TCIYENTATKALL 3150


>gi|427798291|gb|JAA64597.1| Putative cadherin egf lag seven-pass g-type receptor, partial
            [Rhipicephalus pulchellus]
          Length = 3724

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 62/97 (63%), Gaps = 2/97 (2%)

Query: 15   LHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            L P  GVL T ++ LDYE   ++ L V ATN+AG  A+  V V +LD ND+ P+F QL Y
Sbjct: 1657 LDPVTGVLTTGEEALDYERAAVHRLVVRATNLAGTSALARVTVQVLDCNDHAPHFRQLLY 1716

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             G VSEAAP G+ VL   S PLV+ A D+D+  NA L
Sbjct: 1717 RGTVSEAAPAGSAVLRG-SQPLVVAAHDEDTGINAQL 1752



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            +G +   +PLD E    YNL+V  T+   AKA   V V +LD NDN P F++  Y   VS
Sbjct: 1354 HGFIKLARPLDREICASYNLTVQVTD-GSAKASAMVHVEVLDANDNWPVFSESLYQVEVS 1412

Query: 79   EAAPIGALVLTNTS 92
            E++  G  +L  T+
Sbjct: 1413 ESSSPGTEILQLTA 1426



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 13/88 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L+T++PLD+E   +Y + V+AT+  G  A   V V + D NDN P F    Y      
Sbjct: 2472 GELVTQEPLDHEHRHLYEVPVSATDGGGRLAFAVVRVAVTDVNDNEPTFGAAEYE----- 2526

Query: 80   AAPIGALVLTNTSLP---LVIRAEDKDS 104
                   + TNTS+    L +RA D+D 
Sbjct: 2527 -----VSIWTNTSVGTTLLKVRAFDQDQ 2549



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  GVL   +PLDYE T  Y L+V A +       A   + V +LD NDN P F   
Sbjct: 3171 SIEPKTGVLRVARPLDYEETPSYQLAVEARDGGEPPLSARAWLNVSVLDANDNAPVFGG- 3229

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y+  V+E A  G LVL        ++A D DS
Sbjct: 3230 PYSATVTEDASPGQLVLQ-------VQASDADS 3255



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   + LDYE+   + L V AT+ ++GA +   V +++ D ND  P F Q  Y   VS
Sbjct: 2167 GVLSLVELLDYESQPRHELQVRATDSVSGAHSEVPVTINVQDVNDCAPLFEQSWYNVSVS 2226

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKD 103
            EA P+ + +L        +RA D+D
Sbjct: 2227 EATPVASPLLE-------VRASDRD 2244



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            P  GV+ T+  LD EA   YN +V   +     +   V V +LD NDN P F    Y   
Sbjct: 2765 PSSGVVTTRVALDREAVPFYNFTVRVRDDGLLSSSAWVYVEVLDVNDNPPVFEHSRYQLQ 2824

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            V E A  G +V +       +  ED D ET
Sbjct: 2825 VPEDAVAGTVVAS-------LHIEDADRET 2847



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L T   LDYEA   Y+L ++AT+ A     +AV +V V + D ND+ P F  +     
Sbjct: 403 GRLSTANWLDYEAKANYSLQLSATSSAARGRLQAVATVTVRVFDCNDHAPVFDPMPVEVL 462

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P+G  + T       + A D+D   N 
Sbjct: 463 LDENRPVGTKIFT-------VHAHDEDEAENG 487



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL    PLD+EA++ + L+V   +  G    +    V V + D ND+ P F Q  Y   
Sbjct: 1458 GVLSLALPLDHEASQQHLLTVAVRDSGGPVTRRGFARVRVLVTDHNDHAPEFLQARYEVR 1517

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            VSE A  G  +L   +L       D+D   NALL
Sbjct: 1518 VSETAAPGTALLQLGAL-------DRDRGPNALL 1544



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 14/94 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           G+L  K PLD E    + L+VT  + A      + A  S++V   D NDN P+F +  Y 
Sbjct: 854 GLLTVKGPLDREHHDRHLLTVTVADGALEDPLSSTATVSIVVR--DVNDNAPHFARAPYV 911

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  PIGALV +       + AED D   N 
Sbjct: 912 VRIREDLPIGALVTS-------VHAEDADFGDNG 938



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++  ++PLD E    +NL+V A +  G   + S   + V + D ND+ P FTQ  Y   
Sbjct: 3071 GLVRLEQPLDREQCARFNLTVQAQDH-GQPPLASRTHLAVTVQDINDSPPEFTQQMYAAA 3129

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            VSE AP+G      + +   I+A  +D   NA +
Sbjct: 3130 VSEVAPVG------SPISAAIKATSRDVGVNAQI 3157



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +  ++PLD EA + Y L + AT+     A   + + +LD NDN P   +  YT  VSE
Sbjct: 2869 GDVFVQRPLDREALQNYTLKMVATDGLHV-ATTQLEITVLDSNDNPPICLKSKYTELVSE 2927

Query: 80   AAPIGALVLT 89
            +  +G  +LT
Sbjct: 2928 SIAVGTAILT 2937



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  + PLD EA  ++ L V A++    A   +   + V ++D NDN P F Q  YT  
Sbjct: 2266 GVLRLRAPLDREAQPVHRLQVVASDSGHPAPLSSTARIWVTVIDMNDNPPTFAQPAYTAV 2325

Query: 77   VSEAAPIGALV 87
            V + +  G  +
Sbjct: 2326 VDQRSRRGQFI 2336



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 8    FAILKP---ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRN 62
            + +L P   +L P  G L    PLD E    Y L V   +          +VH+  LD N
Sbjct: 3261 YTLLHPGPFSLDPATGQLSVAGPLDRETVSRYVLEVECWDGGTPPLSAQALVHVEVLDVN 3320

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVL 88
            D+ P F Q NYT  V E    G  VL
Sbjct: 3321 DHPPRFDQSNYTAVVHEGRQAGWTVL 3346



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            GVL T +PLD E    Y+L     ++A  +  C+  + +L  D NDN P F Q  Y   +
Sbjct: 2968 GVLHTSRPLDREQRPHYSLVAHVRDVARWEWQCNSSIEVLLSDVNDNPPVFGQKAYELAL 3027

Query: 78   SEAAPIGALV 87
             E  P G LV
Sbjct: 3028 PEDTPAGRLV 3037



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 32/68 (47%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L+   PLD E    ++L++      G      V VH+LD ND  P F  L Y   V+E
Sbjct: 2664 GNLVVAAPLDREHQSTHHLTLRKETSRGLATAFDVTVHVLDDNDCEPVFDVLAYKTAVAE 2723

Query: 80   AAPIGALV 87
             A  G +V
Sbjct: 2724 NAEQGCVV 2731



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 8    FAILKPALH----PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
            F++L P+ H    P  G++    PLD E   ++ L++ A + A A A   + VH++D ND
Sbjct: 1958 FSLLTPSEHFAVGPHSGLVRCLAPLDREERALHELALEARS-ALAVAHALLRVHVMDAND 2016

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            N P F    Y   ++ +A  G LV    ++ L
Sbjct: 2017 NAPIFVNRPYYSVITVSAQPGDLVFKVKAIDL 2048



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G LL    LDYE    + L+VTA +        S  + V +LD NDN P F +  Y+  +
Sbjct: 753 GALLLVAALDYELAPSHLLNVTAYDQGQPPRSTSQTMFVRVLDVNDNAPLFEKPAYSFVI 812

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +E AP G  V         +RA D D   NA L
Sbjct: 813 NEDAPNGTSVAR-------LRAADADQGRNAEL 838



 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDN--TPYFTQLN 72
            P  G++     LD+E  R+YN++V A +       +V ++IV + D N+N   P F +  
Sbjct: 953  PDTGLVRLAAMLDFETWRLYNVTVQAHDCGDPPLTSVTNMIVEVEDVNENLHAPSFAEQV 1012

Query: 73   YTGYVSEAAPIGALVLT 89
             +  V E  P G  V T
Sbjct: 1013 SSATVDENQPPGTSVTT 1029


>gi|125835070|ref|XP_693952.2| PREDICTED: protocadherin Fat 1-like [Danio rerio]
          Length = 4472

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 61/96 (63%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E    Y L V  T+MA   +  +V +++ D NDN P FTQ  YT
Sbjct: 1706 INPNSGAVITRKKLDFETLSSYKLIVQGTDMAEMSSSVTVNIYLKDENDNAPVFTQSEYT 1765

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A I ++VL +   PLV+RA D D  +NA L
Sbjct: 1766 GFISESAIIRSVVLNSQKAPLVVRATDADQHSNARL 1801



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 15/109 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +H   G++   +PLDYEA   Y LS+ AT+ + GA +   V + + D NDN P F    Y
Sbjct: 2222 IHFNSGLIKVIQPLDYEAHPAYRLSIQATDSLTGANSDVFVDIILEDVNDNAPKFEAAVY 2281

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL-------DGSTN 115
            +  +SE+  IG  VL        + A D D+++NA+L       DGST+
Sbjct: 2282 SISISESTVIGTSVLQ-------VVAMDPDAQSNAILFYKLHERDGSTS 2323



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 7    LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDN 64
            LF++ K  L P  G L T + LD+E    + L+V   +  +     V  VI+++ D NDN
Sbjct: 1493 LFSLKKFRLDPGTGFLYTTEKLDHETMHRHILTVMVRDQGVPVKSNVVRVIINVEDSNDN 1552

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P+FT   Y   V E A IG+ VL  T+L       DKD   NA
Sbjct: 1553 PPWFTSSQYAARVFETAAIGSSVLQVTAL-------DKDKSFNA 1589



 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   +PLDYE +  + L+V AT + G +++    +V +H+ D NDN+P F+Q  Y+  
Sbjct: 3276 GDIFVMEPLDYEESSQHYLTVKAT-VGGKQSLSDMATVSIHLQDINDNSPVFSQKIYSAV 3334

Query: 77   VSEAAPIGALVLT 89
            VSE   + + VLT
Sbjct: 3335 VSEDTRLASTVLT 3347



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
            A+    G L+  K LDYE  + Y+L+V   ++     + S +   VH+ D NDN+P F  
Sbjct: 2741 AIDSTTGKLILTKRLDYETIKWYHLAVQVRDVKDDMEIISTVDVSVHLKDVNDNSPQFES 2800

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              Y   ++E  P G  V+        ++A D DS  N 
Sbjct: 2801 FRYQSCIAENLPKGTSVVQ-------VKATDLDSWLNG 2831



 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++ T  P+  E    Y   V  ++    +A   V+V + D N+N P F + NY 
Sbjct: 412 INPNTGLISTSGPIKAEKVSQYEFEVVISDR---RASTKVVVSVSDMNNNAPVFQKSNYE 468

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E  PIG  VLT       + A D D   N 
Sbjct: 469 ASIAEHVPIGTSVLT-------VSATDMDDGENG 495



 Score = 44.3 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G L   +PLD E T  Y L +T  ++   +   S +  V ILD NDN+P F Q  Y   +
Sbjct: 771 GWLKVFQPLDRETTDRYTLKITVYDLGLPQKSSSHLLDVKILDANDNSPEFLQRKYIVDI 830

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE   IG  ++        + A+DKD   N ++
Sbjct: 831 SEDTAIGTDIIQ-------LEAKDKDLGVNGMV 856



 Score = 40.8 bits (94), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 11/91 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++    LD E    YNL+V AT+  G +++ + VI+ +LD N++ P F+Q +Y   + 
Sbjct: 1403 GTIIIAGALDAERQSNYNLTVEATD--GTRSISTQVIIQVLDTNEHRPKFSQNHYEISIP 1460

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E    G  +L        I A DKD E N L
Sbjct: 1461 EEIQPGMKILE-------INATDKD-ENNKL 1483



 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G + T   LDYE  RI+N  V   +       A+   +V +HI++ ND  P FTQ +Y  
Sbjct: 1821 GAIQTLSNLDYEQRRIFNFRVQVHDTGNPRLFAQDTANVTIHIININDCAPKFTQDSYEA 1880

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             +      G  V+T       ++A D+DS
Sbjct: 1881 TLLLPTYKGVKVIT-------VKATDEDS 1902



 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T++ LD E    Y L+V AT+  +    +   V + + D NDN P  T+  Y   V
Sbjct: 1088 GIITTQEILDRETNNHYWLTVYATDQGIVPLSSFVEVYIEVQDVNDNAPLTTEPVYFPSV 1147

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            SE +P G  V+        I+A D DSE++
Sbjct: 1148 SENSPKGVSVIQ-------IQAFDLDSESS 1170



 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T++  D E    +I  +S+ A +  G    C+VIV + D NDN+P F    Y   V
Sbjct: 2539 GQIYTEESFDRENPEEKIIRISLMAKDGGGLLGFCNVIVILSDVNDNSPKFKHSEYKVTV 2598

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               AP    V+  T++       D+D  +NA
Sbjct: 2599 PRDAPSSTTVIKTTAV-------DEDEGSNA 2622



 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 16/104 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            GV+ T   LD+E    ++L V A +  GA  + S   V V+I D NDN P F Q  Y   
Sbjct: 2333 GVIWTAGLLDHETQSQHDLIVKAVD-GGAIQLSSEVQVTVYITDLNDNPPIFAQQLYNAT 2391

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
            +S+ +  G LV         ++A D DS  +     A+L G+ N
Sbjct: 2392 ISKISSPGQLV-------TCVKAFDADSHGSSNLEYAILSGNDN 2428



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVI--VHILDRNDNTPYFTQ 70
           +H   G++   + LD EA  ++ L V A + A    K V +V+  +++ D NDN P F  
Sbjct: 869 IHEETGIVSVMRLLDREANPVFVLRVAAFDAAIDEPKLVSTVLLRINLEDVNDNPPMFVP 928

Query: 71  LNYTGYVSEAAPIGALVL 88
            +Y   V E  P+G LVL
Sbjct: 929 QHYHIRVREDIPVGTLVL 946



 Score = 37.7 bits (86), Expect = 0.96,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L   + LD E    Y L+V A++        S  ++I   D NDN P F+Q NY+  +
Sbjct: 3381 GELQLARQLDREMVASYMLTVMASDSGSPLKSDSAAINIAVSDVNDNPPVFSQANYSLII 3440

Query: 78   SEAAPIGALVL 88
             E  P G  VL
Sbjct: 3441 QENLPSGTSVL 3451



 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
            G + T   LD E T +YNL+V A +        S+++ + D NDN P FT
Sbjct: 3068 GAVKTLATLDREVTDVYNLTVRAVDKDNHFCQASLLITVEDANDNAPKFT 3117



 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            V+   K LD E    Y L++TAT+     A  +V + +LD NDN+P   +  Y   V E 
Sbjct: 2968 VVAVSKTLDREERDFYLLNITATD-GTFVAKAAVEITVLDANDNSPVCEKDVYAQAVPED 3026

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNA 108
              IG  +L        + A D D ++NA
Sbjct: 3027 VLIGKHILQ-------VSATDADIQSNA 3047



 Score = 35.4 bits (80), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  ++ LD +   ++ L V AT+        ++ SV+V +LD ND+ P F +  Y   
Sbjct: 3170 GIISLERSLDKQMKAMHVLRVRATDQGFPHRLSSLGSVVVTVLDANDHPPVFERREYIST 3229

Query: 77   VSEAAPIGALVL 88
            V E   IG  +L
Sbjct: 3230 VPEDVTIGTKLL 3241


>gi|444723716|gb|ELW64355.1| Protocadherin Fat 2 [Tupaia chinensis]
          Length = 4521

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 60/91 (65%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA A   V+V+I+D NDN P F++  + G +SE
Sbjct: 1889 GLISTQKNLDHEKISSYQLKIRGSNMAGAFADVMVLVYIIDENDNAPTFSKSTFVGQISE 1948

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + PLVI A D D E N+LL
Sbjct: 1949 AAPLYSMIMDKNNNPLVIHAFDSDKEANSLL 1979



 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y+L + AT+          ++ V ++D NDN P F QLN
Sbjct: 3546 VHPKTGELQVAKALDWEQTSSYSLRLRATDSGQPPLHEDTNITVQVVDVNDNPPRFFQLN 3605

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3606 YSTTVQENSPIGSKVL 3621



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 9/96 (9%)

Query: 7   LFAILKPALHP----PY-GVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVH 57
           +++I  P + P    PY GV+ T KP+DYE   RIYN  V A++       +   S+ + 
Sbjct: 634 IYSIAGPKVLPFSIDPYLGVISTSKPMDYELMKRIYNFRVRASDWGSPFRREREVSISLR 693

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
           + + NDN P F ++N TG + +  PIG  V+T +++
Sbjct: 694 LKNLNDNQPVFEEVNCTGSIRQDWPIGKSVMTVSAI 729



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2402 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 2461

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2462 EGLPAQTPVIQ-------LLASDQDSGKN 2483



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 1119 GALSLERELDFEKQAGYNLSLWASDGGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1178

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +++ A D DS  +  L
Sbjct: 1179 GQVQENSPSGTQV-------MIVAARDDDSGLDGEL 1207



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            +L P  G+L  +K +D+E T+ Y + V A    N     ++ SV + + D NDN P F  
Sbjct: 2921 SLDPDTGILKVRKAMDHEFTKWYQIYVMAHCLHNGTDLVSLVSVNIQVKDVNDNRPIFEA 2980

Query: 71   LNYTGYVSEAAPIGALVLTNTS 92
              Y   ++E  P+G  V+  T+
Sbjct: 2981 DPYKAVLTENMPVGTSVIQVTA 3002



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            LHP  G L T   LD E    Y+L   AT+  G      V +H+ D NDN P F   + T
Sbjct: 3235 LHPHTGELTTLTALDRERKDTYSLVAKATDGGGRSCQADVTLHVEDVNDNAPRFFPSHCT 3294

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
                        V  NT++     V+ A D D  TNA
Sbjct: 3295 ----------VAVFDNTTVKTPVAVVFARDPDQGTNA 3321



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYE T  Y L++T  ++   +      + V++ D NDN P F    Y   +
Sbjct: 910 GLLTVAAPLDYETTSFYVLNITVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 969

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +         ++ +D DSE N 
Sbjct: 970 SEDTEVGTTIAE-------LKTKDADSEDNG 993



 Score = 40.8 bits (94), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A  +V+V I+D N
Sbjct: 536 VLKPSSQSAGFKLNAHSGLITTTKLMDFHDQTRYELHI---RTSPGRASTTVVVDIVDCN 592

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P F + +Y G + E  P G  VLT       + A D+D   N  +
Sbjct: 593 NHAPVFNRSSYEGTLDENIPPGTSVLT-------VTATDRDHGENGCI 633



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   + LD+E +  Y LS+  +    +    + +++V+I D N+  P F Q  Y   V
Sbjct: 3446 GILYVNRSLDFETSPKYFLSIECSRKGSSSLSDMTTIVVNITDVNEYRPRFPQELYDTRV 3505

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G ++LT       + A D+D   N+ +
Sbjct: 3506 LENAIVGDIILT-------VSATDEDGPLNSAI 3531



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2712 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2771

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2772 SVQSNVSKDSPV 2783



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LD E  + +   V A +      + S   V V I D NDN P F   +Y G 
Sbjct: 3036 GWITTLQELDCETHQTHRFYVVAYDHGQPTQLSSQALVEVSITDENDNAPRFASEDYRGS 3095

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDK 102
            V E +  G LV T  +L   I  +++
Sbjct: 3096 VIENSEPGELVATLKTLDADISEQNR 3121



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + ++D NDN P  ++  +   +
Sbjct: 1227 GMIQTMAPLDREFASYYWLTVLAVDKGSVPLSSVTEVYIEVMDVNDNPPRMSRPVFYPSI 1286

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G  VL        + A D DS +   L
Sbjct: 1287 LEDAPSGTSVLQ-------LEAWDPDSISEGKL 1312



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 14/87 (16%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E    Y L +TA++    +A  +V + +LD NDN+P  +Q      V E    
Sbjct: 3149 SRKTLDREHIAKYLLRITASD-GKFQASVTVEIFVLDINDNSPQCSQ------VREDVSP 3201

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G LVL        + A D D++TNA +
Sbjct: 3202 GHLVLK-------VSATDLDTDTNAQI 3221



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +        + V    M   +    V +++ D N + P+FTQL
Sbjct: 1678 LDPSSGVLVTVGKLDLSSGPSQHTLTVMVRDQEMPIKRNFVWVTIYVEDGNLHPPHFTQL 1737

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   V +    G  +L        +RA D D   NA
Sbjct: 1738 HYEASVPDTTAPGTELLQ-------VRAADSDRGANA 1767



 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LD  +   + L+V A +    K   + +VI+H+   + + P F++  Y   +
Sbjct: 1789 GIITVAQKLDQASHAQHTLTVKAEDQGSPKRHDLATVIIHVYPSDSSAPIFSKAEYFVEI 1848

Query: 78   SEAAPIGALVL-----TNTSLPLVIRAEDKD 103
             E+ P+G+ +L     +++ +   +R  +KD
Sbjct: 1849 PESIPVGSPILLVSATSSSEVTYELREGNKD 1879


>gi|351707763|gb|EHB10682.1| Protocadherin Fat 2 [Heterocephalus glaber]
          Length = 4349

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V+I+D NDN P F    + G +SE
Sbjct: 1707 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDIIVLVYIIDENDNAPMFLNSTFVGQISE 1766

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++     P VIRA DKD E N+LL
Sbjct: 1767 AAPLYSMIMDEDHNPFVIRASDKDKEANSLL 1797



 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            A+HP  G L   K LD+E T  Y+L + AT+       A   V V +LD NDN P F QL
Sbjct: 3374 AVHPEKGALQVAKALDWEQTPSYSLKLRATDSGQPPLHADADVDVQVLDINDNPPRFFQL 3433

Query: 72   NYTGYVSEAAPIGALVL 88
            NY+  V E + IG+ VL
Sbjct: 3434 NYSTAVQENSAIGSKVL 3450



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  GV+ T KP+DYE   RIY   V A++       +   SV + + + NDN P F 
Sbjct: 503 SIDPFLGVISTSKPMDYELMRRIYTFRVRASDWGAPFSQEKEVSVSLRLKNLNDNWPMFE 562

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N T  V +  P+G  V+T +++
Sbjct: 563 EVNCTTSVRQDWPVGKSVMTFSAI 586



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2220 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSVS 2279

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2280 EGLPAHTPVIQ-------LLASDQDSGQN 2301



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L +TA++     +V  V + +LD NDN+P  TQL Y   V E    
Sbjct: 2968 SRKTLDREHTAKYLLRITASDGKFQTSV-PVEISVLDVNDNSPQCTQLLYISRVREDVSP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            GA +L        + A D D++TNA +
Sbjct: 3027 GAFILK-------VSATDSDADTNAQI 3046



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +Y+    AT+  G      V VH+ D NDN P F    + 
Sbjct: 3060 LDPHTGELTTLTALDRERKDMYSFVAKATDGGGRSCQADVTVHVEDVNDNAPRF----FP 3115

Query: 75   GYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
            G+      +     T    P+ V+ A D D   NA
Sbjct: 3116 GFSRSHCTVAVFDNTTVKTPVAVVFARDPDQGANA 3150



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G+L    PLDYE T  Y L+VT  ++ G   + S   + V++ D NDN P F    Y   
Sbjct: 767 GLLTVAAPLDYETTSFYLLNVTVYDL-GTPQLSSWKLLTVNVKDWNDNAPRFPPGGYQLT 825

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +SE   +G  +         ++ +D DSE N 
Sbjct: 826 ISEDTEVGTTIAE-------LKTKDADSEDNG 850



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T K LD E  + Y   V A +      + S   V V ++D N
Sbjct: 2846 ELFAIDSET-----GWITTLKELDCETYQTYRFHVVAYDHGQTIQLASRALVEVSVIDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLT 89
            DN P F   +YTG V E +  G LV T
Sbjct: 2901 DNAPQFVSEDYTGSVVENSEPGELVAT 2927



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  +K LD+E    YNLS+  ++       + +C V V +LD N+N   P F    Y 
Sbjct: 976  GALSLEKELDFERRAGYNLSLWVSDSGRPLPRRTLCRVEVIVLDVNENLHPPRFASFVYQ 1035

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V+        + A D DS  +  L
Sbjct: 1036 GQVQEDSPPGTQVMQ-------VTAHDDDSGLDGEL 1064



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  +K LD+E+T+ Y + + A      T +    A+ SV + + D NDN P F    Y
Sbjct: 2746 GVLKVRKALDHESTKWYQIDLMAHCPYEDTELV---ALVSVHIQVKDVNDNRPIFEADPY 2802

Query: 74   TGYVSEAAPIGALVLTNTS 92
              +++E  P G  V+  T+
Sbjct: 2803 KAFLTENMPGGTTVIQVTA 2821



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   + LD+E +  Y LS+  +  A +    V +V+V+I D N++ P F +  Y+  V
Sbjct: 3275 GILYVNRSLDFETSPKYFLSIECSRKASSSLSDVTTVVVNITDVNEHRPQFPKDLYSTRV 3334

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G ++LT       + A D+D   N+ +
Sbjct: 3335 LENAIVGDVILT-------VTATDEDGPLNSAI 3360



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G++ T+  LD E+   Y L+V A +       +V  V + I+D NDN P  ++ 
Sbjct: 1078 SIDPDTGMIQTQAALDRESIPYYWLTVLAVDRGSVPLSSVTEVYIEIMDVNDNPPRMSRP 1137

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +   + E AP+G  VL        + A D DS +   L
Sbjct: 1138 VFYPCIREDAPLGTSVLQ-------LDAWDPDSSSRGKL 1169



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       LH   G++ T K +D+     Y L V     +   A  +V++ I+D N
Sbjct: 393 VLKPSPESTAFKLHTRTGLITTAKLMDFRDQAHYQLHV---RTSPGLASTTVLIDIVDCN 449

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           ++ P F + +Y G V E  P G  VLT T+
Sbjct: 450 NHAPIFHRSSYEGTVDENIPPGTSVLTVTA 479



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 2531 PSGQITTLQKLDRENSTERVIAIKVMARDGGGKVAFCTVKIILTDENDNAPQFKASRYT 2589



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E+   + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1184 IHPVTGLLSTARQLDRESKDEHILEVTVLDNGEPSLKSTSRVVVCILDINDNAPVFSH 1241


>gi|291387668|ref|XP_002710368.1| PREDICTED: FAT tumor suppressor 2 [Oryctolagus cuniculus]
          Length = 4349

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 59/91 (64%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ TKK LD+E    Y L +  +NMAGA    +V+V+++D NDN P F++  + G VSE
Sbjct: 1710 GLISTKKNLDHEKISSYQLKIRGSNMAGAFTDVTVLVYVIDENDNAPVFSKSTFVGQVSE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDEDNNPFVIHASDNDKEGNSLL 1800



 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y+L V AT+           V + ++D NDN P F QLN
Sbjct: 3373 IHPKKGELQVAKALDWEQTPSYSLRVRATDSGQTPLHEDIDVAIQVVDVNDNPPRFFQLN 3432

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E APIG+ VL
Sbjct: 3433 YSTTVQENAPIGSKVL 3448



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           +++P  G++ T KP+DYE   R+Y   V A++       +   SV + + + NDN P F 
Sbjct: 506 SINPYLGIISTSKPMDYELMRRMYTFRVRASDWGSPFRREKEVSVSLRLQNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
            +N TG + +  P+G  V+T +++
Sbjct: 566 DVNCTGSIRQDWPVGKSVMTMSAI 589



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVVVEDINDNPPTFSQLVYTTSVS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGQN 2304



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KK LD E    Y L +TA++    +A   V + +LD NDN+P  +QL YTG V E A  
Sbjct: 2970 SKKILDREHLAKYLLRITASD-GKFQASVPVEIFVLDINDNSPQCSQLLYTGRVREDASP 3028

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3029 GHFILK-------VSATDLDTDTNAQI 3048



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEISTVQELDYEAQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS+  + L+
Sbjct: 2389 SELATCGHLVLK-------VQALDPDSKDTSHLE 2415



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   + LD+E +  Y LS+  +    A    + +++V++ D N++ P F Q  Y   V
Sbjct: 3273 GILYVNQSLDFETSPKYFLSIECSRKGSASLSDMTTILVNVTDVNEHRPRFRQELYGTRV 3332

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E+A +GA+VLT       + A D+D   N+ +
Sbjct: 3333 LESAVVGAVVLT-------VSATDEDGPLNSAI 3358



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  ++ LD+E    YNLS+  ++       + +C V V +LD N+N   P F    + 
Sbjct: 979  GALSLERELDFERRAGYNLSLWVSDSGRPVARRTLCHVEVMVLDVNENLHPPRFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +++ A D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MLVAAHDDDSGLDGEL 1067



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  +K LD+E+T+ Y + + A      T++    ++ SV + + D NDN P F    Y
Sbjct: 2748 GVLKVRKALDHESTKWYQIDLMAHCPHEDTDLV---SLVSVNIQVKDVNDNRPVFEADPY 2804

Query: 74   TGYVSEAAPIGALVLTNTS 92
              +++E  P G  V+  T+
Sbjct: 2805 RAFLTENMPGGTTVIQVTA 2823



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   IY+L   AT+  G      V +H+ D NDN P F    + 
Sbjct: 3062 LDPHTGELTTFTGLDRERKDIYSLVAKATDGGGRSCQADVTLHVEDVNDNAPRF----FP 3117

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S A      V  NT++     V+ A D D  +NA
Sbjct: 3118 SHCSVA------VFDNTTVKTPVAVVFARDPDQGSNA 3148



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G+     PLDYE T  Y L++T  ++   +     +  V++ D NDN P F    Y   +
Sbjct: 770 GLFSVVAPLDYETTSFYILNITVHDLGTPQKSSWKLLPVNVKDWNDNAPRFPAGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +         ++ +D DSE N 
Sbjct: 830 SEDTEVGTTIAE-------LQTKDADSEDNG 853



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G+L T K LD E    + L VT  +      K+   V+V +LD NDN P F+ 
Sbjct: 1186 AIHPFTGLLTTAKQLDRENKEEHILEVTVLDHGEPALKSTSRVVVRVLDVNDNPPVFSH 1244



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 2533 PTGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASGYT 2591



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P   +  +   +
Sbjct: 1087 GMIQTLAPLDREFVPFYWLTVLAVDRGSVPLSSVTEVYIEVTDVNDNPPRMHRPVFYTSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P+G  VL        + A D DS +   L
Sbjct: 1147 QEGVPVGTSVLQ-------LEAWDPDSSSKGKL 1172



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  + Y   V A +      + S   V V + D N
Sbjct: 2848 ELFAIDSET-----GWITTLQELDCETRQNYQFYVVAYDHGQTVQLSSQALVEVSVTDEN 2902

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G LV T  +L   +  +++
Sbjct: 2903 DNAPQFASEDYRGSVVENSEPGELVATLETLDADVSEQNR 2942



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 21/113 (18%)

Query: 7    LFAILKP------ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L T   +DYE+   +  SV   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTTVSEMDYESMPSFQFSVYVHDQGSPILFAPKPAKVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPI--GALVLTNTSLPLVIRAEDKDSETN 107
            ++ D ND+ P F++  Y   V+   PI  G  +LT       ++A D+DSE +
Sbjct: 1861 NVRDVNDSPPRFSEQIYE--VAVVGPIHPGMELLT-------VQARDEDSEVS 1904



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T + LD+     Y L V  T      A  +V++ I+D N++ P F + +Y G + E
Sbjct: 413 GLITTTRFLDFRDGAHYQLHVRTTP---GLASTTVVIDIVDCNNHAPVFNRSSYEGTLDE 469

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G  +       L + A D D   N  +
Sbjct: 470 NVPPGTSI-------LAVTATDGDRGENGFV 493


>gi|410267946|gb|JAA21939.1| FAT tumor suppressor homolog 1 [Pan troglodytes]
          Length = 4588

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G + T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTISTQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIR 98
            G +SE+A I ++VLT+ ++PLVIR
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIR 1795



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P+F Q  Y   
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPPLSSDMIVTVDVTDLNDNPPFFEQQIYEAR 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDREMISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGIPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.3 bits (90), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+    E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTTPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3039 GKLILQ-------VSATDADIRSNA 3056



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   +PLD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQPLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+   +V V
Sbjct: 1808 VYHIVEPSVHRHFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTV 1867

Query: 57   HILDRNDNTPYFTQ 70
            H++D ND  P F +
Sbjct: 1868 HVIDINDCPPVFAK 1881


>gi|410349159|gb|JAA41183.1| FAT tumor suppressor homolog 1 [Pan troglodytes]
          Length = 4588

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G + T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTISTQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIR 98
            G +SE+A I ++VLT+ ++PLVIR
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIR 1795



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDREMISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P F Q  Y   
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPPLSSDMIVTVDVTDLNDNPPLFEQQIYEAR 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGIPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+    E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTTPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3039 GKLILQ-------VSATDADIRSNA 3056



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   +PLD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQPLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+   +V V
Sbjct: 1808 VYHIVEPSVHRHFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTV 1867

Query: 57   HILDRNDNTPYFTQ 70
            H++D ND  P F +
Sbjct: 1868 HVIDINDCPPVFAK 1881


>gi|410225470|gb|JAA09954.1| FAT tumor suppressor homolog 1 [Pan troglodytes]
 gi|410225472|gb|JAA09955.1| FAT tumor suppressor homolog 1 [Pan troglodytes]
          Length = 4588

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G + T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTISTQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIR 98
            G +SE+A I ++VLT+ ++PLVIR
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIR 1795



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDREMISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P F Q  Y   
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPPLSSDMIVTVDVTDLNDNPPLFEQQIYEAR 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGIPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+    E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTTPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3039 GKLILQ-------VSATDADIRSNA 3056



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   +PLD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQPLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+   +V V
Sbjct: 1808 VYHIVEPSVHRHFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTV 1867

Query: 57   HILDRNDNTPYFTQ 70
            H++D ND  P F +
Sbjct: 1868 HVIDINDCPPVFAK 1881


>gi|410304872|gb|JAA31036.1| FAT tumor suppressor homolog 1 [Pan troglodytes]
          Length = 4588

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G + T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTISTQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIR 98
            G +SE+A I ++VLT+ ++PLVIR
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIR 1795



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDREMISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P F Q  Y   
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPPLSSDMIVTVDVTDLNDNPPLFEQQIYEAR 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGIPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+    E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTTPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3039 GKLILQ-------VSATDADIRSNA 3056



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   +PLD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQPLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+   +V V
Sbjct: 1808 VYHIVEPSVHRHFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTV 1867

Query: 57   HILDRNDNTPYFTQ 70
            H++D ND  P F +
Sbjct: 1868 HVIDINDCPPVFAK 1881


>gi|332820729|ref|XP_003310638.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 1 [Pan troglodytes]
          Length = 4588

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G + T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTISTQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIR 98
            G +SE+A I ++VLT+ ++PLVIR
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIR 1795



 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G++   + LDYE +R + + V A +  G   + S   V V + D NDN P+F Q  Y   
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPPLSSDMIVTVDVTDLNDNPPFFEQQIYEAR 2398

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +SE AP G  V         ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDREMISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+  +     +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGIPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+    E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTTPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3039 GKLILQ-------VSATDADIRSNA 3056



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 17/98 (17%)

Query: 26   KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYTGYVSEA 80
            +PLD+E  ++YNL+V A +     ++ S     ++  D       P F+     G V E 
Sbjct: 987  QPLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEKGTVKED 1046

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1047 APVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+   +V V
Sbjct: 1808 VYHIVEPSVHRHFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTV 1867

Query: 57   HILDRNDNTPYFTQ 70
            H++D ND  P F +
Sbjct: 1868 HVIDINDCPPVFAK 1881


>gi|397506036|ref|XP_003823543.1| PREDICTED: protocadherin Fat 1 [Pan paniscus]
          Length = 4588

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G + T+K LD+E   IY L +  TNMAG     +V+VH+ D NDN P F Q  YT
Sbjct: 1712 INPHSGTISTQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVIR 98
            G +SE+A I ++VLT+ ++PLVIR
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIR 1795



 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN+P F Q +Y   +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVEDINDNSPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ IG  V+        +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
             ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V++ D ND+ 
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+Q  YT  +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V+        IRA D DS TN 
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVVVSVLDINDNPPVFEYREYGAT 3238

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     SV++ + D NDN P F+  
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASVVLTLEDVNDNAPEFSAD 3128

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144



 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   K LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
            Y+  + E  P+G  VL      LV+  ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LDYE +R + + V A +  M    +   V V + D NDN P F Q  Y   +
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVDGGMPPLSSDVIVTVDVTDLNDNPPLFEQQIYEARI 2399

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE AP G  V         ++A D DS
Sbjct: 2400 SEHAPHGHFV-------TCVKAYDADS 2419



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 GSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++   +     ++H++  D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G ++        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVI-------AILSTTDADSE 2948



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+    E    
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTTPEDVLP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L+L        + A D D  +NA
Sbjct: 3039 GKLILQ-------VSATDADIRSNA 3056



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
            G +   +PLD+E  ++YNL+V A +     ++ S     ++  D       P F+     
Sbjct: 981  GAVRIVQPLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E AP+G+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDAGRDGEIRYSIRDGS 1077



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y   + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467

Query: 80   -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              AP   +        L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    KA   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             PIG  V++
Sbjct: 475 NVPIGTTVMS 484



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ I++P++H  +      G + T   LDYE T I++ +V   +M      A+   +V V
Sbjct: 1808 VYHIVEPSVHRHFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYAANVTV 1867

Query: 57   HILDRNDNTPYFTQ 70
            H++D ND  P F +
Sbjct: 1868 HVIDINDCPPVFAK 1881


>gi|73954163|ref|XP_536461.2| PREDICTED: protocadherin Fat 2 [Canis lupus familiaris]
          Length = 4354

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA      +V+I+D NDN P F +  + G VSE
Sbjct: 1713 GLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMALVYIIDENDNAPMFLKSIFVGQVSE 1772

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + PLVIRA D D E N+LL
Sbjct: 1773 AAPLYSMIMDENNNPLVIRASDSDEEANSLL 1803



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 4/77 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            +HP  G L   K LD+E T  Y+L + AT+ +G   +     + + ++D NDN P F QL
Sbjct: 3376 VHPKKGELQVAKALDWEQTSSYSLRLRATD-SGRPPLHEDTVIAIQVVDVNDNPPRFFQL 3434

Query: 72   NYTGYVSEAAPIGALVL 88
            NY+  V E +PIG+ VL
Sbjct: 3435 NYSTSVQENSPIGSKVL 3451



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 8   FAILKPALHP----PY-GVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P   P    PY G++ T KP+DYE   RIY   V A++       +   S+ + +
Sbjct: 498 YSITRPKAVPFSIDPYLGIISTSKPMDYELMRRIYTFRVRASDWGSPFRQEKEVSISLRL 557

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            + NDN P F Q+N TG + E  P+G  V+T +++
Sbjct: 558 KNLNDNKPMFEQVNCTGSIREDWPVGKSVMTVSAI 592



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            + ++K LD E    Y L +TA++    K   SV+V I  LD NDN+P  +QL YTG VSE
Sbjct: 2971 IFSRKTLDREHMAKYLLRITASD---GKFQASVLVEIFVLDINDNSPQCSQLLYTGKVSE 3027

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G  +L        + A D DS+TNA +
Sbjct: 3028 DTSPGHFILK-------VSATDLDSDTNAQI 3051



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2226 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 2285

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2286 EGLPAQTPVIQ-------LLASDQDSGQN 2307



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P F    + 
Sbjct: 982  GALSLERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPRFASFVHQ 1041

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A D DS  +  L
Sbjct: 1042 GQVQENSPSGTQV-------MVVAAHDDDSGLDGEL 1070



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2751 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTHLVSLVSVNIQVKDVNDNRPIFEADPYKAV 2810

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2811 LTENMPVGTSVIQVTA 2826



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYE T  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 773 GMLTVAAPLDYEVTSFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQITI 832

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +         ++A+D DS+ N 
Sbjct: 833 SEDTEVGTTIAE-------LKAKDADSDDNG 856



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2332 GEMSTVQELDYETQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2391

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2392 SELATCGHLVLK-------VQALDPDSRDTSRLE 2418



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E +  + LS+  +    +    + +++V+I D N++ P F Q  Y+  V
Sbjct: 3276 GILYVNKSLDFETSPKFFLSIECSRKGSSSLSDMTTIVVNITDINEHRPRFPQDLYSTRV 3335

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 3336 LENAIVGDVVLT-------VSATDEDGPANSAI 3361



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E    Y+L   AT+  G      V +H+ D NDN P+F
Sbjct: 3065 LDPHTGELTTLTALDREKKDTYSLVAKATDGGGQSCQADVTLHVEDVNDNAPHF 3118



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2536 PNGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2595

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2596 SIQSNVSKDSPV 2607



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V++HI+D NDN P F+ 
Sbjct: 1190 IHPVTGLLSTARQLDRENKDEHILEVTVLDNGEPSLKSTSRVVIHIVDVNDNPPVFSH 1247



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  + Y   V A +      + S   V V I D N
Sbjct: 2851 ELFAIDSET-----GWITTLQELDCETHQTYRFYVVAYDHGRTIQLSSQVMVEVSITDEN 2905

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G +V T  +L   I  +++
Sbjct: 2906 DNAPQFASEDYRGSVVENSEPGEVVATLKTLDADITEQNR 2945



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTPYFTQ 70
            + P  G L+    +DYE    +  SV   +       A     VI+++ D ND+ P F+ 
Sbjct: 1818 IDPSMGTLIIISEMDYENMPSFQFSVYVHDQGNPILFASRPVQVIINVRDVNDSPPRFSD 1877

Query: 71   LNYTGYVSEAAPI-GALVLTNTSLPLVIRAEDKDSETN 107
              Y   V+ A PI   + L      L++RA D+DSE N
Sbjct: 1878 QVYE--VAIAKPIHWGMEL------LIVRASDEDSEVN 1907



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  ++  +   V
Sbjct: 1090 GMIQTLAPLDREFVSCYWLTVLAVDRGSTPLSSVTEVYIEVTDVNDNPPQMSRPVFYPSV 1149

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+   VL        + A D DS +   L
Sbjct: 1150 REDAPLHTSVLQ-------LDARDPDSSSKGKL 1175



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +   A  +V++ I+D N
Sbjct: 399 VLKPSSESAGFRLNARTGLMTTTKLMDFHDRAHYQLHI---RTSPGLASTTVVIDIVDCN 455

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G   E  P G  +LT       + A D+D   N 
Sbjct: 456 NHAPIFNRSSYDGTFDENIPPGTSILT-------VTATDQDHGENG 494



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYE---ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD     +     + V    M   +    V +H+ D N ++P FTQL
Sbjct: 1502 LDPSSGVLVTVGKLDLGLGPSQHTLTVMVRDQEMPIKRNFVWVSIHVEDGNLHSPRFTQL 1561

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   V +    G  +L        +RA D D   NA
Sbjct: 1562 HYEASVPDTTASGTELLQ-------VRAMDADRGANA 1591


>gi|432098834|gb|ELK28329.1| Protocadherin Fat 2 [Myotis davidii]
          Length = 4335

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +   NMAGA     V+V+I+D NDN P F +  + G +SE
Sbjct: 1709 GLISTQKNLDHEKISSYQLKIRGCNMAGAFTDILVVVYIIDENDNAPMFLRPTFVGQISE 1768

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VIRA D D E N+LL
Sbjct: 1769 AAPLYSMIMDENNSPFVIRASDSDKEANSLL 1799



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G L   K LD+E T  Y+L + AT+           V + ++D NDN P F QL
Sbjct: 3371 AIDPKKGELQVAKALDWEQTSSYSLRLRATDSGRPPLHEDTDVAIQVVDVNDNPPRFFQL 3430

Query: 72   NYTGYVSEAAPIGALVL 88
            NY+  V E  PIG+ VL
Sbjct: 3431 NYSTSVQENCPIGSKVL 3447



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 12/91 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            + ++K LD E    Y L +TA++    K   SVIV I  LD NDN+P  +QL YTG VSE
Sbjct: 2967 IFSRKTLDREHIAKYLLRITASD---GKFQASVIVEIFVLDINDNSPQCSQLLYTGKVSE 3023

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G  +L        + A D DS+TNA +
Sbjct: 3024 DISPGHFILQ-------VSATDLDSDTNAQI 3047



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2222 GVLTVTGPLDYESKTKHVFTVRATDTAQGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2281

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2282 EGLPAQTPVIQ-------LLASDQDSGQN 2303



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)

Query: 8   FAILKP-----ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P     ++ P  G++ T KP+DYE   RIY   + A++       +   SV + +
Sbjct: 494 YSIARPKDVPFSIDPYLGIISTTKPMDYELMKRIYTFQIRASDWGSPFRQEKEVSVSLML 553

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIG 84
            + NDN P F ++N TG + E  P+G
Sbjct: 554 NNLNDNKPMFEEVNCTGSLREDWPVG 579



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + VH+ D NDN P F    Y   +
Sbjct: 769 GLLTVAAPLDYEATSFYILNVTVYDLGTPRKSSWKLLTVHVKDCNDNAPRFPPGGYQITI 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +         ++A+D DS+ N 
Sbjct: 829 SEDTGVGTTIAE-------LKAKDADSDDNG 852



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  +K LD+E    YNLS+ A++       + +C V V +LD N+N   P F    + 
Sbjct: 978  GALTLEKELDFERRAGYNLSLWASDNGKPLARRTLCHVEVIVLDVNENLHPPRFDSFVHQ 1037

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A D DS  +  L
Sbjct: 1038 GQVQENSPPGTQV-------IVVTAHDDDSGLDGEL 1066



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2747 GALKVRKAMDYESTKWYQIDLMAHCPYNDTNLISLVSVNIQVKDVNDNRPIFEADPYKAI 2806

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2807 LTENMPVGTAVIQVTA 2822



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P+G + T K LD E +  R+  + V A +  G    C+V + + D NDN P F    YT 
Sbjct: 2532 PHGQITTLKKLDRENSTERVIAIKVRAQDRGGKVGFCTVKIILTDENDNAPQFKASEYTV 2591

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2592 SIQSNVSKDSPV 2603



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE+ + +++ V A +           V+V + D NDN P F Q  Y   V
Sbjct: 2328 GEMSTVQELDYESQQHFHVKVRAMDRGNPPLTGETLVVVGVSDINDNPPEFRQPQYEATV 2387

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G L L        ++A D DS   + L+
Sbjct: 2388 SELAICGHLALK-------VQALDPDSRDTSRLE 2414



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   K LD+E    Y LS+  +    +    + +++V+I D N++ P F Q  Y+  V
Sbjct: 3272 GILYVNKSLDFETNPKYFLSIECSRKGSSSLGDMTTIVVNITDINEHRPRFPQDLYSTRV 3331

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G  VLT       + A D+D   N+ +
Sbjct: 3332 LENAIVGDTVLT-------VSATDEDGPLNSAI 3357



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  GVL T   LD E   +Y+L   AT+  G      V + + D NDN P F      
Sbjct: 3061 LDPHTGVLTTLTALDRERKDVYSLVAKATDGGGQSCQADVTLQVEDVNDNAPRF------ 3114

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3115 -FPSHCA---VAVFDNTTIKTPVAVVLARDPDQGANA 3147



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +  +      A  +V++ I+D N
Sbjct: 395 VLKPSSEGTGFKLNARTGLITTTKLMDFHDQAHYQLHIKTSP---GLASTTVLIDIVDCN 451

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F +L+Y G   E  P G+ VLT       + A D+D   N 
Sbjct: 452 NHAPVFHRLSYAGTFDENIPPGSSVLT-------VTATDRDHGENG 490



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 8/87 (9%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2847 ELFAIDSET-----GWITTLQELDCETRQTYHFYVVAYDHGRTIQLSSQVLVEVSITDEN 2901

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLT 89
            DN P F   +Y G V E +  G  V T
Sbjct: 2902 DNAPKFASEDYRGSVIENSEPGEPVAT 2928



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +     +  + V    M   +    V +H+ D N + P FTQL
Sbjct: 1498 LDPSSGVLVTVGKLDLSSGPSQHMLTVMVRDQEMPIRRNFVWVSIHVEDGNRHPPRFTQL 1557

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   V +    G  +L        +RA D D   NA
Sbjct: 1558 HYEASVPDTTVPGTELLQ-------VRAMDGDRGANA 1587



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            A+HP  G+L T + LD E    + L VT  +      ++   V+V I D NDN P F+ 
Sbjct: 1185 AIHPLTGLLSTARQLDRETKDEHILEVTVLDNGEPSLRSTSRVVVCISDVNDNAPVFSH 1243



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE----AAP 82
           L+ E    Y L V AT      +A+  V+VHILD+ND  P F+  +Y   +SE     +P
Sbjct: 107 LNREVRDSYTLIVQATEKTLEFEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMALKSP 166

Query: 83  IGALVLTNTSL 93
           I  +  T+  L
Sbjct: 167 ICKVTATDADL 177


>gi|390460196|ref|XP_002745206.2| PREDICTED: protocadherin Fat 1 [Callithrix jacchus]
          Length = 4541

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 57/83 (68%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++T+K LD+E   IY L V  TNMAG     +V+VH+ D NDN+P F Q  YT
Sbjct: 1712 INPHSGSIITQKALDFETLPIYTLIVQGTNMAGLSTNTTVLVHLQDENDNSPVFAQAEYT 1771

Query: 75   GYVSEAAPIGALVLTNTSLPLVI 97
            G +SE+A + ++VLT+ ++PLVI
Sbjct: 1772 GLISESASVNSVVLTDRNVPLVI 1794



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D ND+ P F Q +Y   +S
Sbjct: 2234 GVVSVVAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIVVEDINDSPPVFAQQSYAATLS 2293

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            EA+ +G  V+        +RA D DSE N
Sbjct: 2294 EASVVGTSVVQ-------VRATDSDSEPN 2315



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 9/106 (8%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRN 62
            V   ++ K  L P  G L T + LD+EA   + L+V     ++   +    ++V + D N
Sbjct: 1497 VDPLSLKKFRLDPATGSLYTSEKLDHEAIHQHVLTVMVRDQDVPVKRNFARIVVDVSDTN 1556

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D+ P+FT  +Y G V E+A +G++VL  T+L       DKD   NA
Sbjct: 1557 DHAPWFTSSSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K LD+E  + Y  SV A    G   V S   V + + D NDN+P F    Y  +
Sbjct: 2758 GRLKLEKRLDHETAKWYQFSVLARCTQGDYEVVSSVDVSIQVKDANDNSPVFESSPYEAF 2817

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  V+        IRA D DS TN 
Sbjct: 2818 IVENLPAGTRVIQ-------IRASDADSGTNG 2842



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +V+V +LD NDN P F    Y   
Sbjct: 3150 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLSASGTVVVSVLDINDNPPVFEYREYGAT 3209

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 3210 VSEDVLVGTEVLQ-------VYAASRDIEANA 3234



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 14/109 (12%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K +L    G +     LDYE++  Y L+V AT+        V +V +++ D NDN+P F+
Sbjct: 3248 KFSLDSKTGAVFIIGNLDYESSHEYYLTVEATDGGTPSLSDVATVSINVTDINDNSPVFS 3307

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            Q  YT  +SE A +   V+T       + A+D D   N     +++DG+
Sbjct: 3308 QATYTAVISEDAVLEQSVIT-------VMADDADGPLNSHIHYSIIDGN 3349



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A++   G + T K LD+E T  Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 2861 AINVETGWITTLKELDHEKTDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y G VSE  P G +V        ++   D DSE
Sbjct: 2921 EIYKGTVSEDDPPGGVV-------AILSTTDDDSE 2948



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)

Query: 25   KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E A  
Sbjct: 2981 KKPLDREQRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDALP 3038

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
            G L++        + A D D  +NA
Sbjct: 3039 GKLIMQ-------VSATDADIRSNA 3056



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G +   + LD E    Y L+V A++      V +  V+I   D NDN P F++ N
Sbjct: 3356 IDPVRGEVKVTRLLDRETISGYTLTVQASDNGSPPKVNTTTVNIDVSDVNDNAPAFSREN 3415

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E  P+G  VL      LV+   D+DS  N 
Sbjct: 3416 YSVVIQENKPVGFSVLQ-----LVVT--DRDSSHNG 3444



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 2546 GQVFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATRYEVSI 2605

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +A  G  V+        + A D D  +NA
Sbjct: 2606 RSSAAKGTSVIK-------VLASDADEGSNA 2629



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 14   ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
            ++HP  G++ T  + LD E    + L VT T+        +  +IV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARIIVKILDENDNKPQFLQ 1247

Query: 71   LNY 73
              Y
Sbjct: 1248 KFY 1250



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++  KPLD E    YNL+V AT+      +  V + ++D ND+ P F+   Y      
Sbjct: 1409 GTVIVAKPLDAEQKSDYNLTVEATDGTNT-ILTQVFIKVIDTNDHRPQFSTSKY------ 1461

Query: 80   AAPIGALVLTNTSLP----LVIRAEDKDSETNALL 110
                  +V+   ++P    L I A D+D E N L+
Sbjct: 1462 -----EVVIPEDTVPETEILQISATDQD-EKNKLI 1490



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 7    LFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ I++P++H  +      G L T   LDYE T I+  +V   +M      A+   +V +
Sbjct: 1808 VYHIVEPSVHSYFAIDSSTGALHTVLSLDYEETSIFQFTVQVHDMGTPRLFAEYAANVTI 1867

Query: 57   HILDRNDNTPYFTQ 70
            H++D ND  P F +
Sbjct: 1868 HVIDINDCPPVFAR 1881



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD E T  Y L++T  ++    KA   ++ V ++D NDN P F Q +Y   V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLDVAVVDANDNPPEFLQESYFVEV 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE   + + ++        + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +P+  +    + L VT ++    +A   V+V +L  N N P FTQ  Y     E
Sbjct: 418 GLISILEPVKRQQAAQFELEVTTSDR---RASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474

Query: 80  AAPIGALVLT 89
             P+G  V++
Sbjct: 475 NVPVGTTVMS 484



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
            G +   + LD+E  ++YNL+V A +     ++ S     ++  D     + P F+     
Sbjct: 981  GAVRIVQQLDFEKKQVYNLTVKAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E APIG+LV+T       + A D+D+  +     ++ DGS
Sbjct: 1041 GAVKEDAPIGSLVMT-------VSAHDEDAGRDGEVRYSIRDGS 1077



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+   +PLD E   ++ L + A ++A  +    +   + V + D NDN P F   NY  
Sbjct: 875 GVVKIVQPLDREVQPVHYLKIEARDLAREEPQLFSTVVLKVSLEDVNDNPPKFIPPNYRV 934

Query: 76  YVSEAAPIGALVL 88
            V E  P G +V+
Sbjct: 935 KVREDLPEGTVVM 947



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T   LD E+T  Y L+V AT+       +   + V + D NDN P  ++  Y   V
Sbjct: 1089 GVIETSDRLDRESTSHYWLTVFATDQGVVPLSSFIEIYVEVEDVNDNAPQTSEPVYYPEV 1148

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P    V+        I A D DS +N  L
Sbjct: 1149 MENSPKDVSVVQ-------IEAFDPDSSSNDRL 1174


>gi|292620786|ref|XP_001920058.2| PREDICTED: protocadherin Fat 2 [Danio rerio]
          Length = 4342

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G+L  K  LD+E    Y+L ++ATN AG  +   V V+++D NDN P F Q  Y G +SE
Sbjct: 1708 GLLSVKNALDFEQHSSYHLQISATNTAGISSDAVVFVYVIDANDNAPVFHQDVYYGQISE 1767

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +AP+ ++V    + PLVI+A D D +TNALL
Sbjct: 1768 SAPVNSMVTGENNTPLVIKASDADKDTNALL 1798



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GVL+T + LDYE+T+ + L V AT+           +IV+++D NDN P F++ +
Sbjct: 2319 IDPLSGVLVTTQVLDYESTQQFTLKVKATDKGVPPLSGEAHIIVNVIDVNDNPPDFSEPS 2378

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            Y   + E A  G +V+        ++A D DS+ +
Sbjct: 2379 YRASLDEMATCGNIVIK-------VQASDPDSKDD 2406



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            +++K PLD E    Y L + AT+    +   +V VH+LD NDN+P+  QL YT  V E +
Sbjct: 2959 VISKSPLDREDKDKYTLKIIATD-GRFQTSANVEVHVLDLNDNSPFCEQLQYTEAVMENS 3017

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G ++L        I A D D  TN 
Sbjct: 3018 SSGKVILK-------ISASDPDIGTNG 3037



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV++T + LD+E    Y   VTA +    +AV  VIV I D NDN P FT  +Y   + E
Sbjct: 415 GVIVTSQSLDFENRNHYEFDVTAND---GEAVTRVIVDITDENDNAPSFTLPSYQASLPE 471

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              IG  VL+       + A D D + N  +
Sbjct: 472 NVRIGTSVLS-------VSAIDVDKDNNGFV 495



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL     LD+E+   + L+V AT+ ++G  A   V + + D NDN P F  L+Y   V 
Sbjct: 2221 GVLSVTDFLDFESETKHILTVRATDSVSGTFAEAKVEIDVEDINDNAPVFQNLSYVADVF 2280

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  PIG  VL        + A D+D++ NA
Sbjct: 2281 EGLPIGTSVLQ-------VSAVDRDADKNA 2303



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL+ K+ LDYE    + L V   +  +   K    V+VH+ D ND+ P F   +Y G +
Sbjct: 1502 GVLVLKEELDYETISTHTLIVMVRDDKIPIKKNFAKVVVHVEDCNDHIPSFLDTHYEGII 1561

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            S  A  G  VL        ++A DKD+ +NA
Sbjct: 1562 SNLALTGTEVLR-------VKALDKDTGSNA 1585



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 5/79 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDN--TPYFTQLNYT 74
            G L  ++ LD+E  + YNL+V A +    +++   C + + +LD N+N   P F ++ +T
Sbjct: 979  GSLTLERELDFEKRQFYNLTVRAVDHGKPRSLSSSCFIEIEVLDVNENLNRPLFGEMVHT 1038

Query: 75   GYVSEAAPIGALVLTNTSL 93
              V E A IG  VLT T++
Sbjct: 1039 AAVMEDAKIGTSVLTLTAV 1057



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDN 64
            FAI K       G ++ +  +D+E T++Y + V A    N     ++ SV + + D NDN
Sbjct: 2733 FAIDKDG-----GTVVLQNNIDHEKTKMYKIDVIAQGNHNGTNVASLVSVHIEVQDVNDN 2787

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P F    Y  +++E  P G  V+        + A D D+  N 
Sbjct: 2788 KPMFEADTYKAFLAENLPSGTTVIQ-------VTANDADANING 2824



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 18/102 (17%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA------VCSVIVHILDRNDNTPYF 68
            ++P  G+L  K  LD+E  R Y LSV      GA+       +  VI++I D NDN P F
Sbjct: 3261 INPVTGLLSVKAALDFERCREYYLSV-----EGARGKPLLSDIAMVIINITDVNDNPPVF 3315

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +Y+  + E    G + L        +RA D D   N  +
Sbjct: 3316 NRSSYSTVIPEDISPGEMALQ-------VRAIDLDGPPNNFI 3350



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E  + Y+L V AT+  G      V + + D NDN P F+  +Y 
Sbjct: 3053 LDPKTGELFTLAVLDREREKEYDLVVKATDGGGRSCQADVTLMVQDMNDNPPQFSTSHYE 3112

Query: 75   GYVSEAAPIGALVLTNTSL--PL-VIRAEDKDSETNA 108
                        V  NT++  P+ VI A+D D+  N+
Sbjct: 3113 ----------VTVFDNTTIRTPIAVIYAKDPDTGINS 3139



 Score = 40.8 bits (94), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHIL--DRNDNTPYFTQ 70
            A+    G + T K  D E  +++   V AT+   A K   SV+V +   D NDN P FT+
Sbjct: 2842 AIDSQTGWITTLKEADSETKQLHRFFVVATDHGDALKQSASVLVEVTLTDENDNPPQFTE 2901

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
              Y G + E +  G  ++T T+    + AE++
Sbjct: 2902 ELYQGSILENSRPGENIVTLTTADKDVSAENR 2933



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T +PLD E  + R+  + + A +  G    C+V + + D NDN P F    Y   +
Sbjct: 2528 GQIVTSQPLDRENPSQRVIAIKIMAKDGGGRVGFCTVKIILTDENDNVPQFKASEYDISI 2587

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  G+ V+        I A D D   NA
Sbjct: 2588 QSTVNKGSPVIQ-------IMAYDADEGKNA 2611



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
            P Q F+I      P  G +  +  LD E    Y+L+V A +       +   V V + D 
Sbjct: 3359 PKQQFSI-----DPRTGFITLRSMLDREEITHYSLTVQAADEGDPPLSSAVQVTVTVSDV 3413

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVL 88
            NDN P F+++N++  V E   +G+ +L
Sbjct: 3414 NDNPPMFSKINHSLIVQEGEAVGSGIL 3440



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+    PLD E  R Y+L++ A + A       +   V+V + D NDN P F    Y  
Sbjct: 873 GVVKVIGPLDRETFRRYDLTIEARDQAKPDPQLFSFTDVVVVLEDINDNPPKFVPTVYKI 932

Query: 76  YVSEAAPIGALVLTNTSLPL------VIRAEDKDSETNA-LLDGST 114
            V E  P G ++L   S  L      VI    K+SE+    LD ST
Sbjct: 933 KVPEDVPPGTVLLWVESFDLDLESGGVISYNLKNSESGTFFLDTST 978



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 7    LFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIV 56
            ++ IL+PA H      P  G +  K  +D+EAT  +  SV   +       A   C VI+
Sbjct: 1799 VYQILEPAAHEVFKIDPSMGTISLKSLIDFEATPEFFFSVQVWDSGEPSLSASKPCKVII 1858

Query: 57   HILDRNDNTPYF 68
             +LD ND  P F
Sbjct: 1859 RVLDFNDCPPKF 1870



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  GV+ T +  DYE   R Y+L + A++        + C+V + + + NDN P F 
Sbjct: 508 SIDPLTGVISTSQEFDYELMKRWYHLRIWASDSGNPFNRVSECTVTITMTNVNDNVPVFE 567

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPL 95
           ++     +     +G ++   ++L L
Sbjct: 568 RVACNASIPRDFAVGEIIAEISALDL 593


>gi|348557432|ref|XP_003464523.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2-like [Cavia
            porcellus]
          Length = 4356

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  ++MAGA     V+V I+D NDN P F    + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSSMAGAFTDIVVLVDIIDDNDNAPMFLNSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   S P V+RA DKD E NALL
Sbjct: 1770 AAPLYSMIVGEDSSPFVVRASDKDQEANALL 1800



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T + LDYEA R +++ V AT+           VIV++ D NDN P F Q  Y   V
Sbjct: 2329 GEMVTLQELDYEAQRHFHVKVRATDRGNPPLTGETLVIVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQALDPDSRDTSRLE 2415



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2223 GVLTVTGPLDYESKTRHIFTVRATDTALGSFSEATVEVFVEDVNDNPPTFSQLVYTTAVS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTSVIQ-------LLASDQDSGHN 2304



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 8   FAILKP-----ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMA---GAKAVCSVIVHI 58
           ++I+ P     ++ P  GV+ T KP+DYE   RIY   V A++       +   SV + +
Sbjct: 495 YSIIAPKAVPFSIDPFSGVISTSKPMDYELMRRIYMFRVRASDWGTPFRQEKEVSVSLRL 554

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            + NDN P F ++N T  + +  P+G  V+T +++
Sbjct: 555 KNLNDNRPMFEEVNCTVSIRQDWPVGRSVMTFSAI 589



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G+L+   PLDYE T  Y L++T  ++   +     +  V++ D NDN P F    Y   +
Sbjct: 770 GLLMVAAPLDYETTSFYLLNITVYDLGTPQKSSWKLLAVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +         ++ ED+DSE N 
Sbjct: 830 SEDTEVGTTIAE-------LKTEDEDSEDNG 853



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E    Y L +TA++     +V  V + +LD NDN+P   QL YTG V E    
Sbjct: 2970 SRKTLDREYMAKYLLRITASDGKFQTSV-PVEIFVLDVNDNSPQCPQLLYTGRVREDVSP 3028

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3029 GHFILK-------VSATDLDTDTNAQI 3048



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQL 71
            P  G L  +K LD+E    YNLS+  ++       + +C V V +LD N+N   P F   
Sbjct: 976  PMTGALSLEKELDFERRAGYNLSLWVSDSGKPLARRTLCHVEVIVLDVNENLHPPRFASF 1035

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y G V E +P G  V+        + A+D D+ ++ 
Sbjct: 1036 VYQGQVQENSPPGTQVMQ-------VMAQDDDNGSDG 1065



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T K LD E  + Y   V A +      + S   V V I D N
Sbjct: 2848 ELFAIDSES-----GWITTLKELDCETHQTYRFHVVAFDHGQTIQLSSQALVEVSITDEN 2902

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P FT  +Y G V E +  G LV T  +L   I  +++
Sbjct: 2903 DNAPRFTSEDYRGSVVENSEPGELVTTLRTLDADISEQNR 2942



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y+L + AT+       +   + V ++D NDN P F QLN
Sbjct: 3373 IHPKKGELQVAKALDWEQTSSYSLKLRATDSGQPPLHSDVDIDVQVVDVNDNPPRFFQLN 3432

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +P+G+ VL
Sbjct: 3433 YSTAVQENSPVGSQVL 3448



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 17/112 (15%)

Query: 6   QLFAILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI 58
           +L  +LKP+       LH   G++ T K LD+     Y L V  T+   A AV  VIV I
Sbjct: 392 KLQYVLKPSSESVGFKLHARTGLITTAKLLDFRDRARYQLYVR-TSPGLASAV--VIVDI 448

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +D N++ P F + +Y G + E  P G  VLT       + A D+D   N  +
Sbjct: 449 VDCNNHAPIFNRSSYDGTLDENIPPGTSVLT-------VTATDQDPGENGYI 493



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 9/79 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  +K LD+E+T+ Y + + A      T +    A+ SV + + D NDN P F    Y
Sbjct: 2748 GVLKVRKALDHESTKWYQIDLMAHCPHEDTELV---ALVSVHIQVKDVNDNRPVFEADPY 2804

Query: 74   TGYVSEAAPIGALVLTNTS 92
              +++E  P G  V+  T+
Sbjct: 2805 KAFLTENMPGGTTVIQVTA 2823



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G++ T+ PLD E+   Y L+V A +       +V  V + I D NDN P  ++ 
Sbjct: 1081 SIDPDTGMIQTRAPLDRESVPYYWLTVLAVDGGSVPLSSVTEVYIEITDVNDNPPRMSRP 1140

Query: 72   NYTGYVSEAAPIGALVL 88
             +   + E AP+G  VL
Sbjct: 1141 VFYPCIVENAPLGTSVL 1157



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   + LD+E +  Y LS+     A A    V +++V++ D N++ P F +  Y+  V
Sbjct: 3273 GILYVNRSLDFETSPKYFLSIECIRKASASLSDVTTIVVNVTDVNEHHPRFPKDLYSARV 3332

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A  G ++LT       + A D+D   N+ +
Sbjct: 3333 LENAIRGDIILT-------VSATDEDGPLNSAI 3358



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G L T   LD E   +Y+L   AT+  G      V +H+ D NDN P F      
Sbjct: 3062 MGPHTGELTTLTALDRERKDMYSLVAKATDGGGRSCQADVTLHVEDVNDNAPRF------ 3115

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     +  NT++     V+ A D D  TNA
Sbjct: 3116 -FPSHCA---VAIFDNTTVKTPVAVVFARDPDQGTNA 3148



 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL P       + P  G L     +DYE+  ++  +V   +       A     VI+
Sbjct: 1801 IYKILDPEASKFFKIDPSMGTLTVLSEIDYESRPLFQFNVYVHDQGSPILFAPRPAKVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE-TNALLDGSTN 115
            ++ D ND+ P F +  Y   V      G  +LT       +RA D+DSE T ++  G+T+
Sbjct: 1861 YVRDVNDSPPRFAEQIYEAAVVGPIHFGMELLT-------VRASDEDSEVTYSIKTGNTD 1913



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C V + + D NDN P F    YT
Sbjct: 2533 PNGQITTLQKLDRENSTERVIAIKVMARDGGGKVAFCIVKIILTDENDNAPQFKASRYT 2591



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            LHP  G+L T + LD E+   + L VT  +      ++   V+V ILD NDN P F+ 
Sbjct: 1187 LHPLTGLLSTARQLDRESKDEHILEVTVLDNGEPSLRSTSRVVVCILDINDNAPTFSH 1244



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDY---EATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD     +     + V    M   +    V VH+ D N + P FTQL
Sbjct: 1499 LDPSTGVLVTVGKLDLGSGPSQHTLTVMVRDQEMPIKRNFVWVTVHVKDGNIHPPRFTQL 1558

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   V +    GA +L        ++A D D   NA
Sbjct: 1559 HYEARVPDTIAPGAELLQ-------VQAVDADRGANA 1588


>gi|355750344|gb|EHH54682.1| hypothetical protein EGM_15570 [Macaca fascicularis]
          Length = 4349

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D ETN+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKETNSLL 1800



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDWEQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +  +  V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNSDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPTDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIHQDWPVGKSIVTMSAI 589



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    Y 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVYQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAAQDDDSGLDGEL 1067



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDRDSGQN 2304



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLVYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q +Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPHYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV+T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGKLVVTLKTLDADISEQNR 2940



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   ++NL   AT+  G      V +H+ D NDN P F
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADVTLHVEDVNDNAPRF 3113



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVVVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPILFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDDDSEVN 1904



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V++ ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTARQLDRENKDEHILEVTVLDNGEPSLKSTSRVVIGILDVNDNPPVFSH 1244



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDTPL 163



 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +    V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQVSTMVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPIFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491


>gi|109079410|ref|XP_001110265.1| PREDICTED: protocadherin Fat 2-like [Macaca mulatta]
          Length = 4349

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D ETN+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKETNSLL 1800



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E    Y+L + AT+           + V + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDWEQASSYSLKLRATDSGQPPLHEDTDIAVQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +  +  V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNSDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPTDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIHQDWPVGKSIVTMSAI 589



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    Y 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVYQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAAQDDDSGLDGEL 1067



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDRDSGQN 2304



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLVYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q +Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPHYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV+T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGKLVVTLKTLDADISEQNR 2940



 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   ++NL   AT+  G      V +H+ D NDN P F
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADVTLHVEDVNDNAPRF 3113



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVVVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPILFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDDDSEVN 1904



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V++ ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTARQLDRENKDEHILEVTVLDNGEPSLKSTSRVVIGILDVNDNPPVFSH 1244



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163



 Score = 34.3 bits (77), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +    V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQVSTMVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPIFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491


>gi|355691768|gb|EHH26953.1| hypothetical protein EGK_17044 [Macaca mulatta]
          Length = 4349

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D ETN+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKETNSLL 1800



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDWEQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +  +  V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNSDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPTDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIHQDWPVGKSIVTMSAI 589



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    Y 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVYQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAAQDDDSGLDGEL 1067



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDRDSGQN 2304



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLVYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q +Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPHYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV+T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGKLVVTLKTLDADISEQNR 2940



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   ++NL   AT+  G      V +H+ D NDN P F
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADVTLHVEDVNDNAPRF 3113



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVVVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPILFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDDDSEVN 1904



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V++ ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTARQLDRENKDEHILEVTVLDNGEPSLKSTSRVVIGILDVNDNPPVFSH 1244



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +    V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQVSTMVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPIFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491


>gi|402873140|ref|XP_003900444.1| PREDICTED: protocadherin Fat 2 [Papio anubis]
          Length = 4349

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D ETN+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKETNSLL 1800



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDWEQASSYSLKLRATDSGQPPLHEDTDITIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +  +  V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNSDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPTDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIHQDWPVGKSIVTMSAI 589



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDRDSGQN 2304



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLVYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAAQDDDSGLDGEL 1067



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYE T  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEVTNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV+T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGKLVVTLKTLDADISEQNR 2940



 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   ++NL   AT+  G      V +H+ D NDN P F
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADVTLHVEDVNDNAPRF 3113



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVVVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPILFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDDDSEVN 1904



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V++ ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTARQLDRENKDEHILEVTVLDNGEPSLKSTSRVVIGILDVNDNPPVFSH 1244



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +    V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQVSTMVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPIFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491


>gi|344265172|ref|XP_003404660.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2-like [Loxodonta
            africana]
          Length = 4345

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V+I+D NDN P F +  + G +SE
Sbjct: 1702 GLISTQKSLDHEKISSYQLKIRGSNMAGASTDVMVLVYIIDENDNAPKFLKPTFVGQISE 1761

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++V+   + P VI A D D E N+LL
Sbjct: 1762 AAPLHSMVMDENNSPFVIHAIDSDKEANSLL 1792



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y L + AT+           + + ++D NDN P F QLN
Sbjct: 3365 IHPKTGELQVAKALDWEQTSSYLLRLRATDSGQPPLHEDTDIDIQVVDVNDNPPRFFQLN 3424

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3425 YSTTVQENSPIGSKVL 3440



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            + ++K LD E T  Y LSVTA++    +A   V + +LD NDN+P  +QL Y G VSEA 
Sbjct: 2960 IFSRKTLDRELTAKYLLSVTASD-GKFQASVPVEIFVLDINDNSPQCSQLLYAGKVSEAV 3018

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNALL 110
              G  VL        + A D D++TNA +
Sbjct: 3019 APGHFVLK-------VSAIDLDTDTNAQI 3040



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  +K LD+E    YNLS+ A++       + +C V V +LD N+N   P+FT   + 
Sbjct: 971  GALSLEKELDFETQTGYNLSLWASDSGKPLARRTLCHVEVIVLDVNENLHPPHFTSFVHQ 1030

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            G V E +P+G  V       +V+ A D DS
Sbjct: 1031 GQVQEDSPLGTQV-------MVVAAHDDDS 1053



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2215 GVLTVTGPLDYESKTKHIFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 2274

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2275 EGLPAQTPVIQ-------LLASDRDSGQN 2296



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L++T  ++    K+   ++ V+++D NDN P F    Y   +
Sbjct: 762 GLLSVSAPLDYEATSFYILNITVYDLGTPPKSSWKLLTVNVIDWNDNAPRFPPGGYQVTI 821

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE A +G+ +         ++A+D DSE N 
Sbjct: 822 SEDAEVGSTIAE-------LKAKDADSEDNG 845



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  KK +DYE+T+ Y + V A      T++    ++ S+ + + D NDN P F    Y
Sbjct: 2740 GVLKVKKAMDYESTKWYQIDVMAHCSHKDTDLV---SLVSINIQVKDVNDNRPIFEADPY 2796

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +++E  P+G  V+        + A D+D+ ++ 
Sbjct: 2797 KAFLTENMPVGTTVIQ-------VTANDQDTGSDG 2824



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2321 GEMSTAQELDYEAQQHFHMKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2380

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2381 SELATCGHLVLK-------VQALDPDSRDTSCLE 2407



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T + LD E   +YNL   AT+  G      V +H+ D NDN P F    + 
Sbjct: 3054 LDPYTGELTTFRALDREKKDVYNLVAKATDGGGRSCQADVTLHVEDVNDNAPRF----FP 3109

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S A      V  NT++     V+ A D D  TNA
Sbjct: 3110 SHCSVA------VFDNTTVKTPVAVVFARDPDQGTNA 3140



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            LH   GVL   + LD+E +  Y LS+  +    +    + +++V+I D N++ P F Q  
Sbjct: 3260 LHTHTGVLYVNRSLDFETSPKYFLSIECSRKGSSSLSDMTTIVVNITDVNEHQPRFLQDL 3319

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            Y+  V E A +G ++LT       + A D+D   N
Sbjct: 3320 YSVKVLENAIVGDIILT-------VSATDEDGPLN 3347



 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 14/105 (13%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   + V I D N
Sbjct: 2840 ELFAIDSES-----GWITTLQELDSETRQSYSFYVVAYDHGQTLQLSSEALIEVSITDEN 2894

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            DN P F   +Y G+V E +  G LV T  +L      +D  SE N
Sbjct: 2895 DNAPRFASEDYRGFVVENSEPGELVATLKTL------DDDISEQN 2933



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E    Y L+V A +       +V  V + + D NDN P  ++  +   V
Sbjct: 1079 GAIQTTAPLDREFISYYWLTVLAVDKGSVPLSSVTEVYIEVTDVNDNPPRISRPVFYPSV 1138

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+      NTS+ L + A D DS +N  L
Sbjct: 1139 REDAPL------NTSV-LQLDAWDPDSSSNGKL 1164



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 2525 PSGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYT 2583



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYE---ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD     +     + V    M   +    V +H+ D+N + P FTQL
Sbjct: 1491 LDPSSGVLVTVGKLDLGLGPSQHTLTVMVRDQEMPIKRNFVWVTIHVEDKNLHPPRFTQL 1550

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   V +    G  +L        +RA D D   NA
Sbjct: 1551 HYEAQVPDTTAPGTDLLQ-------VRAIDDDRGANA 1580



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V +LD NDN P F+ 
Sbjct: 1179 IHPLTGLLSTARKLDRENKDEHILEVTVLDNGEPPLKSTSRVVVRVLDVNDNPPVFSH 1236



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVQDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYKVTISEDMPL 163


>gi|449267132|gb|EMC78098.1| Protocadherin Fat 2 [Columba livia]
          Length = 4375

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L V  TNMAGA     V+++++D NDN P F + ++ G++ E
Sbjct: 1711 GLISTQKSLDFEQVSFYQLKVRGTNMAGAFTDTIVLIYVIDENDNAPIFVKPSFVGWIME 1770

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP  ++VL  ++ PLV  A D D ++NALL
Sbjct: 1771 NAPSQSMVLDESNAPLVTHATDADQDSNALL 1801



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KKPLD E T  Y L V A++    +A+  V + +LD NDN+P   Q+ YTG VSE A  
Sbjct: 2969 SKKPLDREDTEKYLLKVMASD-GKFQAITEVEIFVLDINDNSPECGQIFYTGRVSEGALP 3027

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        I A D D  +NA +
Sbjct: 3028 GLFILK-------ISATDPDVGSNAQI 3047



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQL 71
            A+ P  G +   K LD E    Y+L+V AT+         V   +H+ D NDN P F QL
Sbjct: 3373 AIQPKSGQISIAKHLDREEIPSYSLTVRATDNGHPAQFSDVALHIHVSDVNDNPPRFFQL 3432

Query: 72   NYTGYVSEAAPIGALVL 88
            NY+  V E AP+G  VL
Sbjct: 3433 NYSVVVQENAPVGTSVL 3449



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + + + V AT+  M    +   VIV + D NDN P F+QL Y   V
Sbjct: 2330 GQITTAQALDYERNQQFRMKVRATDHGMPPLSSDALVIVDVTDINDNPPEFSQLQYEAKV 2389

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G +V+   +L
Sbjct: 2390 SEMATCGHIVIKVQAL 2405



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 14/101 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL     LDYE    +  +V AT+ A G+ +   V V + D NDN P F+Q+ YT  VS
Sbjct: 2224 GVLTVTGQLDYELETKHTFTVKATDTALGSFSEARVEVEVEDVNDNPPVFSQMIYTASVS 2283

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
            E+ P    V+        + A DKDS  N       L DGS
Sbjct: 2284 ESLPAQTPVVQ-------LFASDKDSGRNKAVSYQILDDGS 2317



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L     LD+EA+  Y LS+  T    A    V  V+++I D ND+ P F Q  Y   +
Sbjct: 3274 GALYINGSLDFEASHEYYLSIEGTRKGSASLSDVTMVVINITDINDHAPEFIQDPYFADI 3333

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E A +G ++LT       + A+D D   N
Sbjct: 3334 REDAAVGEIILT-------VSADDLDGAMN 3356



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD EA  IY   V AT+      + S   V V + D NDN P FT   Y G 
Sbjct: 2856 GWITTLKELDCEAQEIYRFYVVATDHGRKVQLSSQTLVEVTVSDENDNAPQFTSDFYKGS 2915

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDK 102
            V E A  G +V+T +++   I  +++
Sbjct: 2916 VIENAEPGQVVVTLSTIDADISEQNR 2941



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNT--PYFTQLN 72
            G L  +K LDYE    YNL+V  ++  G K     ++C + V+ILD N+N   P F    
Sbjct: 981  GALRLEKELDYEKKDSYNLTVQVSD--GGKPFSRSSLCHLEVNILDVNENLHPPRFASFV 1038

Query: 73   YTGYVSEAAPIGALVLTNTS 92
            + G+V E +P G  V+  T+
Sbjct: 1039 FKGWVQENSPEGTSVMMVTA 1058



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L  KK +D+E T+ Y + V A        + S++   +H+ D NDN P F    Y  +
Sbjct: 2748 GALKIKKAMDHETTKWYQIDVMAHCSHQETELVSLVSVNIHVQDVNDNRPVFEADPYKAF 2807

Query: 77   VSEAAPIGALVLTNTS 92
            V E  P G  V+  T+
Sbjct: 2808 VMENMPSGTTVIQVTA 2823



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD+E T  Y L++T  ++   +     +  V++LD NDNTP F Q  Y   +
Sbjct: 772 GLLQVLSPLDHERTSFYILNITVYDLGTPQKSSWKLLAVNVLDTNDNTPKFPQGAYWVAI 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G  +         ++AED D++ N 
Sbjct: 832 PEHVATGTTIAQ-------LKAEDADTDDNG 855



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTPYFTQLN 72
            P  G L ++  +DYE T +++ SV A +       A     V +H+ D ND+ P F++ N
Sbjct: 1818 PSTGTLTSRADIDYELTPVFHFSVHAHDSGNPSLFASKPAKVTIHVKDVNDSPPVFSKDN 1877

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            Y   V   A  G  +L+       ++A+D DSE
Sbjct: 1878 YELSVLLPAHPGMELLS-------VQAKDADSE 1903



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E   +Y+L   AT+  G      + + + D NDN P F      
Sbjct: 3061 LGPHTGELTTSAPLDREQKPMYHLVAKATDGGGRSCQADITLIVEDTNDNAPRF------ 3114

Query: 75   GYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
             + S  A +     T T  P+ V+ A D D   NA
Sbjct: 3115 -FPSHCA-VAVFDNTTTKTPIAVVAARDLDEGPNA 3147



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 28  LDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           L+ E    Y L + AT    A +A   V++HILDRND  P F+  +Y   + E  P+  +
Sbjct: 110 LNREVKDSYMLIIKATESTFAYEAWAKVLIHILDRNDLKPLFSPPSYKVSIREDTPLKTV 169

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
           V T       + A D D+  NA
Sbjct: 170 VCT-------LSATDADAGQNA 184



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-CSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  +PLD      YNL+V  T+  G+  +     +H++D N + P F + +Y   + 
Sbjct: 1403 GSMVIARPLDARKKSSYNLTVEVTD--GSTTIKTQAFIHVIDINQHRPQFLESHYEERIP 1460

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        + A DKD
Sbjct: 1461 EDTPSGREILR-------VSATDKD 1478



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           IL+P        ++P  G++ T + +D+     + L VT TN   +  V    + I D N
Sbjct: 399 ILRPTPDSTSFKINPHTGLITTARTMDFREQSHFVLEVTTTNSHTSTTVH---IDITDCN 455

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P F+Q +Y G   E  P G  VLT       ++A D+D   N  +
Sbjct: 456 NHAPSFSQSSYRGAFDENVPPGTSVLT-------VQATDEDEGNNGFV 496



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 33/74 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKPLDY+A   YNL V A +           V I  RN + P F  L Y 
Sbjct: 2119 IDPYLGDISLKKPLDYQALNKYNLRVIAKDKGEPPLHAEEEVVISVRNKSNPLFQSLYYR 2178

Query: 75   GYVSEAAPIGALVL 88
              V E  P+   +L
Sbjct: 2179 VKVPENIPLYTSIL 2192



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT--- 74
            G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT   
Sbjct: 2536 GHITTLQKLDRENSTERVIAIKVMAKDGGGKVAFCTVKIILTDENDNPPQFKASEYTLSI 2595

Query: 75   -GYVSEAAPI 83
               VS+ +P+
Sbjct: 2596 QSNVSKGSPV 2605



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 13  PALHPPY-GVLLTKKPLDYE-ATRIYNLSVTATNMAGA-KAVCSVIVHIL--DRNDNTPY 67
           P +  PY G++ T K +DYE   R Y+L V A++     +    V V ++  + NDN P 
Sbjct: 507 PFVIDPYSGIISTSKSMDYELMQRWYHLRVWASDWGSPFRHETEVYVSLMLSNVNDNAPV 566

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSL 93
           F + + +G +    P+G  V T +++
Sbjct: 567 FEKASCSGTIPRDFPVGNPVATVSAI 592



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E T  Y L+V A ++      +V  + + + D NDN P  ++  +   V
Sbjct: 1089 GTIRTTGPLDREGTSHYWLTVLALDLGTIPLSSVTEIYIEVTDTNDNPPQMSRPVFYTSV 1148

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P       NTS+ L + A D DS +   L
Sbjct: 1149 MENSP------PNTSV-LQLDALDPDSSSEGKL 1174


>gi|149052656|gb|EDM04473.1| rCG33481 [Rattus norvegicus]
          Length = 3111

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 58/91 (63%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T+K LD+E    Y L +  +NMAG       +V+I+D NDN P F +  + G++SE
Sbjct: 470 GLISTQKRLDHEKVPSYRLRIRGSNMAGVFTEVVALVYIIDENDNPPAFGKPTFLGHISE 529

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           AAP+ +L+L   + PLV+RA D D E N+LL
Sbjct: 530 AAPLHSLILGEDNSPLVVRASDSDREANSLL 560



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G L   K LD+E T  Y+L + AT+           V V ++D NDN P F QLN
Sbjct: 2133 INPKKGKLQVAKALDWEQTPSYSLRLRATDSGQPPLHEDTEVAVEVVDVNDNPPRFFQLN 2192

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG  VL
Sbjct: 2193 YSTSVQENSPIGIKVL 2208



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 983  GVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 1042

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E +P    V+        + A D+DS  N
Sbjct: 1043 EGSPAQTPVIQ-------LLASDQDSGQN 1064



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E    Y L VTA++    +A   V V ++D NDN+P  +QL YTG V E    
Sbjct: 1730 SRKTLDREHIAKYLLRVTASD-GKFQASVPVEVFVVDINDNSPQCSQLLYTGKVREDVTP 1788

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D +TNA +
Sbjct: 1789 GHFILK-------VSAIDVDMDTNAQI 1808



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 17/108 (15%)

Query: 7   LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIV 56
           ++ IL+P       + P  G L T   LD+E T ++  ++      T +  A     VI+
Sbjct: 561 VYKILEPEALKFFKIDPSMGTLTTTSELDFEDTPLFQFNIYVHDQGTPILFAPRSAKVII 620

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
           H+ D ND+ P F++  Y   V E    G  +LT       ++AED DS
Sbjct: 621 HVRDVNDSPPRFSEQIYEVAVVEPIHPGMGLLT-------VQAEDNDS 661



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   +YNL   AT+  G      V +HI D NDN P F
Sbjct: 1822 LDPHTGELTTLTVLDRERKDVYNLVAKATDGGGQSCQAEVTLHIEDVNDNAPRF 1875



 Score = 41.6 bits (96), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  +K +D+E+T+ Y + + A      T++    ++ SV + + D NDN P F    Y
Sbjct: 1508 GVLKVRKAMDHESTKWYQIDLMAHCPHEDTDLV---SLVSVSIQVEDVNDNRPVFEADPY 1564

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +++E  P G  V+        + A D+D+ ++ 
Sbjct: 1565 KAFLTENMPGGTTVIQ-------VTANDQDTGSDG 1592



 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + + + V A +           V+V++ D NDN P F +  Y   V
Sbjct: 1089 GEIFTIQELDYETHQHFRVKVRAMDKGDPPLTGETLVVVNVSDINDNPPKFREPQYEANV 1148

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G LVL   +L
Sbjct: 1149 SELATCGHLVLKVQAL 1164



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 1293 PRGQITTLQKLDRENSTERVIAIKVMARDGGGKVAFCTVKIILTDENDNAPQFKASGYTV 1352

Query: 75   ---GYVSEAAPI 83
                 VS  +PI
Sbjct: 1353 SIPSNVSRDSPI 1364



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFA+   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 1608 ELFAVDSES-----GWITTLQELDCETQQTYSFYVVAFDHGQTIQLSSQALVEVSITDEN 1662

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            DN P F   +Y G V E    G LV T  +L
Sbjct: 1663 DNPPRFASEDYRGSVVENNEPGELVATLKTL 1693



 Score = 37.7 bits (86), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E    Y LS+  +  + +    V ++++++ D N++ P FT   YT  V
Sbjct: 2033 GILYVNGSLDFETNPKYFLSIECSRKSSSSLSDVTTIVINVTDVNEHHPRFTHDLYTVRV 2092

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G ++LT       + A D D   N+ +
Sbjct: 2093 LENAVVGDVILT-------VSASDDDGPVNSAI 2118



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 15  LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           L P  GVL+T   L+  +     I  + V    M   +    V +H+ D N ++P+FTQL
Sbjct: 259 LDPSSGVLVTVGTLELHSGPSQHILTVMVRDQEMPIKRNFVWVTIHVEDGNLHSPHFTQL 318

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   V +    G  +L        +RA D D   NA
Sbjct: 319 RYEANVPDTTAPGTELLQ-------VRAVDADRGANA 348



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 29/65 (44%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +  KKP DY+A   Y+L V A +         V VH+  RN + P F    Y 
Sbjct: 878 IDPYVGDISLKKPFDYQALNKYHLRVIARDSGIPPLQTEVEVHVTVRNKSNPLFQSPYYK 937

Query: 75  GYVSE 79
             V E
Sbjct: 938 VKVPE 942


>gi|12621132|ref|NP_075243.1| protocadherin Fat 2 precursor [Rattus norvegicus]
 gi|22095688|sp|O88277.1|FAT2_RAT RecName: Full=Protocadherin Fat 2; AltName: Full=Multiple epidermal
            growth factor-like domains protein 1; Short=Multiple
            EGF-like domains protein 1; Flags: Precursor
 gi|3449286|dbj|BAA32458.1| MEGF1 [Rattus norvegicus]
          Length = 4351

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAG       +V+I+D NDN P F +  + G++SE
Sbjct: 1710 GLISTQKRLDHEKVPSYRLRIRGSNMAGVFTEVVALVYIIDENDNPPAFGKPTFLGHISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ +L+L   + PLV+RA D D E N+LL
Sbjct: 1770 AAPLHSLILGEDNSPLVVRASDSDREANSLL 1800



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFT 69
            +HP  G L  +K LD+E    YNLS  A++       + +C V V ++D N+N  +P+F+
Sbjct: 974  VHPMTGALSLEKELDFERRAGYNLSFWASDSGKPLSRRTLCHVEVLVMDVNENLHSPHFS 1033

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               Y G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1034 SFVYQGQVQENSPAGTPV-------MVVTAQDDDSGLDGEL 1067



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G L   K LD+E T  Y+L + AT+           V V ++D NDN P F QLN
Sbjct: 3373 INPKKGKLQVAKALDWEQTPSYSLRLRATDSGQPPLHEDTEVAVEVVDVNDNPPRFFQLN 3432

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG  VL
Sbjct: 3433 YSTSVQENSPIGIKVL 3448



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2223 GVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E +P    V+        + A D+DS  N
Sbjct: 2283 EGSPAQTPVIQ-------LLASDQDSGQN 2304



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  GV+ T KP+DYE   RIY   V A++       +   SV + + + NDN P F 
Sbjct: 506 SIDPLLGVISTTKPMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPL 95
           ++N T  + +  P+G  ++  +++ +
Sbjct: 566 EVNCTVSLRQDVPVGKSIMAVSAIDM 591



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E    Y L VTA++    +A   V V ++D NDN+P  +QL YTG V E    
Sbjct: 2970 SRKTLDREHIAKYLLRVTASD-GKFQASVPVEVFVVDINDNSPQCSQLLYTGKVREDVTP 3028

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D +TNA +
Sbjct: 3029 GHFILK-------VSAIDVDMDTNAQI 3048



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 17/108 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIV 56
            ++ IL+P       + P  G L T   LD+E T ++  ++      T +  A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTTTSELDFEDTPLFQFNIYVHDQGTPILFAPRSAKVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            H+ D ND+ P F++  Y   V E    G  +LT       ++AED DS
Sbjct: 1861 HVRDVNDSPPRFSEQIYEVAVVEPIHPGMGLLT-------VQAEDNDS 1901



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   +YNL   AT+  G      V +HI D NDN P F
Sbjct: 3062 LDPHTGELTTLTVLDRERKDVYNLVAKATDGGGQSCQAEVTLHIEDVNDNAPRF 3115



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  +K +D+E+T+ Y + + A      T++    ++ SV + + D NDN P F    Y
Sbjct: 2748 GVLKVRKAMDHESTKWYQIDLMAHCPHEDTDLV---SLVSVSIQVEDVNDNRPVFEADPY 2804

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +++E  P G  V+        + A D+D+ ++ 
Sbjct: 2805 KAFLTENMPGGTTVIQ-------VTANDQDTGSDG 2832



 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L T  PLD E T  Y L+V A +       AV  V + + D NDN P  ++  +   V
Sbjct: 1087 GMLETLAPLDREFTPYYWLTVLAVDRGSVPLSAVTEVYIEVTDINDNIPSMSRPVFYPSV 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 LEDAPLGTSVLQ-------LEAWDPDSSSQGKL 1172



 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + + + V A +           V+V++ D NDN P F +  Y   V
Sbjct: 2329 GEIFTIQELDYETHQHFRVKVRAMDKGDPPLTGETLVVVNVSDINDNPPKFREPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G LVL   +L
Sbjct: 2389 SELATCGHLVLKVQAL 2404



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
           G+L+    LDYE T  Y L+VT  ++    K+   ++ V + D NDN P F    Y   +
Sbjct: 770 GLLMVAAALDYETTSFYVLNVTVYDLGTPPKSSWKLLTVTVKDWNDNPPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
           SE   +G  +         ++ ED DSE N
Sbjct: 830 SEDTEVGTTIAE-------LKTEDADSEDN 852



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T K +D+     Y L V     +  +A  +VI+ I+D N++ P F + +Y G + E
Sbjct: 413 GLITTTKLVDFHEQNQYQLHV---KTSLGQATTTVIIDIVDCNNHAPVFNRSSYEGTLDE 469

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G  VLT       + A D+D   N 
Sbjct: 470 NIPPGTSVLT-------VTATDQDHGDNG 491



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PRGQITTLQKLDRENSTERVIAIKVMARDGGGKVAFCTVKIILTDENDNAPQFKASGYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS  +PI
Sbjct: 2593 SIPSNVSRDSPI 2604



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G+L T K LD E    Y L VT  +      ++   V+V ILD NDN P F+   
Sbjct: 1187 VHPFTGLLTTAKQLDRENKDEYVLEVTVQDNGDPSLRSTSRVVVCILDVNDNPPMFSHKL 1246

Query: 73   YTGYVSE 79
            +   +SE
Sbjct: 1247 FNVRLSE 1253



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFA+   +     G + T + LD E  + Y   V A +      + S   V V I D N
Sbjct: 2848 ELFAVDSES-----GWITTLQELDCETQQTYRFYVVAFDHGQTIQLSSQALVEVSITDEN 2902

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            DN P F   +Y G V E    G LV T  +L
Sbjct: 2903 DNPPRFASEDYRGSVVENNEPGELVATLKTL 2933



 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E    Y LS+  +  + +    V ++++++ D N++ P FT   YT  V
Sbjct: 3273 GILYVNGSLDFETNPKYFLSIECSRKSSSSLSDVTTIVINVTDVNEHHPRFTHDLYTVRV 3332

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G ++LT       + A D D   N+ +
Sbjct: 3333 LENAVVGDVILT-------VSASDDDGPVNSAI 3358



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   L+  +     I  + V    M   +    V +H+ D N ++P+FTQL
Sbjct: 1499 LDPSSGVLVTVGTLELHSGPSQHILTVMVRDQEMPIKRNFVWVTIHVEDGNLHSPHFTQL 1558

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   V +    G  +L        +RA D D   NA
Sbjct: 1559 RYEANVPDTTAPGTELLQ-------VRAVDADRGANA 1588



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L V A++ +   +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIVQASDKSLEFEALTQVVVHILDQNDLKPLFSPPSYRVTISEDRPL 163



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 29/65 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKP DY+A   Y+L V A +         V VH+  RN + P F    Y 
Sbjct: 2118 IDPYVGDISLKKPFDYQALNKYHLRVIARDSGIPPLQTEVEVHVTVRNKSNPLFQSPYYK 2177

Query: 75   GYVSE 79
              V E
Sbjct: 2178 VKVPE 2182


>gi|432896879|ref|XP_004076361.1| PREDICTED: protocadherin Fat 3-like [Oryzias latipes]
          Length = 4672

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+K LD+E T  Y L V A +MAG +A  +VIV + D NDN P   Q+ Y G VSE
Sbjct: 1703 GVITTRKMLDFELTASYFLMVRALSMAGVEASAAVIVQVGDINDNPPELLQIRYAGRVSE 1762

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AA + ++VL     PLVI+A DKD   NA+L
Sbjct: 1763 AALVNSVVLGEDGNPLVIQATDKDRNHNAML 1793



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T   LDYEA   + L+V   +      + +  ++V + D NDN P+FT+  
Sbjct: 1493 VSPGTGVIYTADRLDYEARTQHILTVMVKDQEFPFNRDLARIVVAVEDINDNVPFFTRTT 1552

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   V E +P G  VL  T+L       DKDS  N  L
Sbjct: 1553 YDAVVYETSPAGYSVLQVTAL-------DKDSGINGQL 1583



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L+  KPLD E   +YN++V  T+   + A   V + + D NDN P F+Q  Y   VSE
Sbjct: 1395 GTLVVAKPLDAEVQSVYNMTVQVTD-GTSFATAQVFIRVQDSNDNPPVFSQPTYDVTVSE 1453

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSE 105
             AP    +L        +RA D D  
Sbjct: 1454 DAPADMELLR-------VRATDIDER 1472



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   KPLDYE   IY   V A    ++  +     V V ILD NDN P F    Y   
Sbjct: 2749 GLIRLLKPLDYEDVNIYRFKVAAMTRRDLTESVTTVDVEVKILDVNDNQPVFETNAYVAT 2808

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P G  V+        +RA D D  +N 
Sbjct: 2809 VMEGMPAGTRVIQ-------VRALDPDWGSNG 2833



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+    G + T   +D+EA   Y+  V A+++A    + S   V + + D NDN P F +
Sbjct: 2867 AIDSKTGWITTVGQMDHEACSSYSFEVVASDLAELLPLSSSAVVTITVSDINDNPPQFDR 2926

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              Y G V E+ P+G +V       +V+R +D+D
Sbjct: 2927 EFYRGAVKESDPLGEVV-------VVLRTKDQD 2952



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           L+ E    Y L+V A+   G +A+ +V + +LD ND  P F+   Y+  VSE+AP+G  +
Sbjct: 103 LNREVQDNYTLTVKASAQGGLEALVTVFIKVLDTNDLRPLFSPTFYSFVVSESAPLGTTI 162



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTG 75
            GV++ +K LD E+   Y +   AT+  G +   S    + + +LD NDN P F + +Y  
Sbjct: 3185 GVVILEKSLDRESQESYRIRAQATDRVGQQGAMSSQVDLTILVLDVNDNAPVFQKRDYAV 3244

Query: 76   YVSEAAPIGALVL 88
             + E   +G  VL
Sbjct: 3245 TIPEDVAVGTEVL 3257



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G++   +PLD E    Y L++T  +  G   + S   + V I D NDN P F Q NY+  
Sbjct: 764 GLITVLQPLDREQLDRYFLNITIYDQ-GIPTMSSWRLLTVIIEDANDNDPRFYQDNYSAV 822

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V+E + IG+ V+T       I A DKD   N  L
Sbjct: 823 VAENSAIGSEVIT-------ITAFDKDMGQNGQL 849



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     LD+E  + Y ++V A +           V++ ++D NDN P F Q  Y   +
Sbjct: 3292 GSISVADDLDFEVCKDYYITVEAWDSGNPPLSTATMVVIELMDVNDNAPTFDQDVYNVLI 3351

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +G  V         + AED DS+ N  +
Sbjct: 3352 SEDASVGQTVTR-------VSAEDLDSQVNGRI 3377



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 8/90 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G++    PLDYE  + Y L+V A + + GAK+   V + +LD NDN P F   +Y   +S
Sbjct: 2224 GIITVVYPLDYETIQYYRLTVKAADTLTGAKSEVDVDIVVLDVNDNPPEFHNSSYACVLS 2283

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E +  G  VL        + A+D+DSE NA
Sbjct: 2284 ENSMTGTSVLQ-------VFAQDQDSEKNA 2306



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 32/68 (47%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T   +D E    YNL   AT+  G      + + +LD NDN P F+  +Y   V E
Sbjct: 3083 GELRTATVMDRELVPTYNLIAQATDGGGLFCRSDISLKVLDVNDNAPLFSSTHYLASVYE 3142

Query: 80   AAPIGALV 87
             A   AL+
Sbjct: 3143 NAAPKALL 3150



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T + LD E    +   L+V A +  G  + C+V V + D NDN P F  + Y   +
Sbjct: 2536 GVISTVEMLDRENPLNKDMVLTVMALDGGGRASFCTVRVVLADENDNAPKFRAVEYRMSI 2595

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  G+LV         I+A D D+ +N  +
Sbjct: 2596 KANVAKGSLVTQ-------IQATDPDAGSNGRI 2621



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 14  ALHPPYGVLLTKKPLDYEATR-IYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           A+    G L   + LD+E+++  Y  +V A++       ++  +V + +++ NDN P F 
Sbjct: 504 AIQQHTGELRITRDLDFESSKDTYTFAVRASDWGSPYRRESELNVTIRVININDNPPLFE 563

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPL 95
           + +  G VS   P+   ++T +++ +
Sbjct: 564 KTSCRGMVSRDFPVNRTIVTLSAIDM 589



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G+L   K LD E   +Y LSV A + +G+ A+ + +   + I D NDN P F   
Sbjct: 3392 IDPVTGLLKVNKKLDRELVSMYTLSVQAFD-SGSPAMSTRVTVNIDISDVNDNPPVFAPP 3450

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N T  +      G  +L        +   DKDS  N 
Sbjct: 3451 NSTAVIQLNQVAGTELLK-------LSVSDKDSPRNG 3480


>gi|229442267|gb|AAI72776.1| FAT tumor suppressor 2 precursor [synthetic construct]
          Length = 896

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 370 GLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 429

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           AAP+ ++++   + P VI A D D E N+LL
Sbjct: 430 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 460



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7   LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
           ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 461 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQVII 520

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
           H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 521 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 564


>gi|224067665|ref|XP_002195148.1| PREDICTED: protocadherin Fat 2 [Taeniopygia guttata]
          Length = 4428

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L V  TNMAGA     V+++++D NDN P F + ++ G++ E
Sbjct: 1713 GLISTQKNLDFEQVSFYQLKVRGTNMAGAFMDAVVLIYVIDENDNVPVFVKPSFVGWIME 1772

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP  ++VL  ++ PLV  A D D ++NALL
Sbjct: 1773 NAPAQSMVLDESNAPLVTYATDADQDSNALL 1803



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KKPLD E T  Y L V A++    +A   V + +LD NDN+P   Q+ YTG VSE A  
Sbjct: 2971 SKKPLDREDTEKYLLKVVASD-GKFQATTEVEIFVLDINDNSPECGQILYTGRVSEDAGP 3029

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G L+L        I A D D  +NA +
Sbjct: 3030 GLLILK-------ISATDPDVGSNAQI 3049



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+ P  G +   K LD E    Y L+V AT+  G  A  S   V VH+ D NDN P F Q
Sbjct: 3375 AIQPKNGQISIAKHLDREEIPSYALTVRATD-NGHPAQFSDVPVHVHVSDVNDNPPRFFQ 3433

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            LNY+  V E AP+G  VL      L++   D+DS  N 
Sbjct: 3434 LNYSVVVQENAPVGTSVLE-----LIM--SDRDSPENG 3464



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL     LDYE    +  +V AT+ A G+ +   V V + D NDN P F+Q+ YT  VS
Sbjct: 2226 GVLTVTGQLDYELETKHTFTVRATDTALGSFSEARVEVEVEDINDNPPIFSQIIYTASVS 2285

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E+ P    V+        + A DKDS  N ++
Sbjct: 2286 ESLPPQTPVVQ-------LFASDKDSGRNKVV 2310



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFT 69
            K  L+P  G L     LD+E +  Y LS+  T    A    V  V+++I D ND+ P F 
Sbjct: 3268 KFQLNPNTGALYINGSLDFEVSHEYYLSIEGTRKGSASLSDVTMVVINITDINDHAPEFI 3327

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            Q  Y   + E A IG ++LT       + A+D D   N
Sbjct: 3328 QDPYFTDIREDAAIGEIILT-------VSADDLDGSMN 3358



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD+E T  Y L++T  ++   +     +  V++LD NDNTP FTQ +Y   +
Sbjct: 772 GLLQVLSPLDHEQTSFYILNITVYDLGTPQKSSWKLLAVNVLDTNDNTPKFTQASYWVAI 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G  +         ++AED D++ N 
Sbjct: 832 PEHVAAGTTIAQ-------LKAEDADTDDNG 855



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LDYE  + + + V A +  G   + S   VIV + D NDN P F+QL Y   
Sbjct: 2332 GHITTAQALDYETNQQFRMKVRAADH-GVPPLSSDALVIVDVTDINDNPPEFSQLQYEAK 2390

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            VSE A  G +V+        ++A D DS     L+
Sbjct: 2391 VSEMATCGHIVIK-------VQALDPDSGDTTRLE 2418



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNT--PYFTQLN 72
            G L  +K LDYE    YNL+V  ++  G K     ++C + V+++D N+N   P F    
Sbjct: 981  GALRLEKELDYEKRDSYNLTVQVSD--GGKPFSRSSLCHLEVNVIDVNENLNPPRFASFI 1038

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGST 114
            + G+V E +P G  V+  T+  +      KD E    L   T
Sbjct: 1039 FKGWVQENSPKGTSVMMVTAKDI---DRGKDGEVQYFLREGT 1077



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G L  KKP+D+E T+ Y + V A      T +    ++ SV + + D NDN P F    Y
Sbjct: 2750 GALKIKKPMDHETTKWYQVDVMAHCSHLETELV---SLVSVNIQVQDVNDNRPVFEADPY 2806

Query: 74   TGYVSEAAPIGALVLTNTS 92
              +V E  P G  V+  T+
Sbjct: 2807 RAFVMENMPSGTTVIQVTA 2825



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD E   IY   V AT+      + S   V V + D NDN P FT   Y G 
Sbjct: 2858 GWITTLKELDCEDQEIYRFYVVATDHGRKVQLSSQTLVEVTVSDENDNAPQFTSDFYKGS 2917

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDK 102
            V E A  G +++T +++   I  +++
Sbjct: 2918 VIENAEPGQVIVTLSTIDADISEQNR 2943



 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G ++  +PLD      YNL+V  T+ +   K      +H++D N + P F Q +Y   V 
Sbjct: 1403 GSMVIARPLDARKKSSYNLTVEVTDGSSTIKTQVMAFIHVIDINQHRPQFLQSHYEVRVP 1462

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        + A DKD
Sbjct: 1463 EDTPSGREILR-------VSATDKD 1480



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           IL+P        ++P  G++ T + +++     + L VT++    +  V   IV I+D N
Sbjct: 399 ILRPTPDSTSFKINPYTGLITTVRAMNFHEQSSFELEVTSSISHTSTTV---IVDIIDCN 455

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P FTQ +Y G   E  P G  VLT       ++A D+D   N  +
Sbjct: 456 NHAPSFTQSSYHGAFDENVPPGTSVLT-------VKATDEDKGDNGFV 496



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 13  PALHPPY-GVLLTKKPLDYE-ATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPY 67
           P +  PY GV+ T K +DYE   R Y+L V A++       +    V + + + NDN P 
Sbjct: 507 PFVIDPYSGVIFTSKSMDYELMQRWYHLRVWASDWGSPFRHETEVYVSLTLSNVNDNAPV 566

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSL 93
           F + + +G +    P+G+ V T +++
Sbjct: 567 FEKASCSGTIPRDFPVGSPVATVSAI 592



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT--- 74
            G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT   
Sbjct: 2538 GCIATLQKLDRENSTERVIAIKVMAKDGGGKVAFCTVKIILTDENDNPPLFKASEYTLSI 2597

Query: 75   -GYVSEAAPI 83
               VS+ +P+
Sbjct: 2598 QSNVSKGSPV 2607



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 28  LDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           L+ E    Y L + AT    A +A   V++HILDRND  P F+  +Y   + E  P+  +
Sbjct: 110 LNREVKDSYMLIIKATESTLAYEAWAKVLIHILDRNDLKPLFSPPSYKVSIREDTPLKTV 169

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
           + T       + A D D+  NA
Sbjct: 170 IST-------LSATDADAGQNA 184



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L ++  +DYE T +++ SV   +       A     V +
Sbjct: 1804 IYEILEPEALKYFTVDPSTGTLTSRADIDYELTPVFHFSVHVHDSGSPSLFASKPAKVTI 1863

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE-TNALLDGS 113
            H+ D ND+ P F +  Y   V   A  G  +L+       ++A+D DSE T ++++G+
Sbjct: 1864 HVKDVNDSPPVFLKDIYDVSVLLPAHPGMELLS-------VQAKDADSEVTYSIVEGN 1914



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E    Y+L   AT+  G      V + I D NDN P F      
Sbjct: 3063 LGPHTGELSTSASLDREQKPTYHLVAKATDGGGRSCQADVTLIIEDTNDNAPRF------ 3116

Query: 75   GYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
             + S  A +     T T  P+ V+ A D D   NA
Sbjct: 3117 -FPSHCA-VAVFDNTTTKTPIAVVAARDLDEGLNA 3149



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 30/68 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  K+PLDY+A   YNL V A +           V I  RN + P F  L Y 
Sbjct: 2121 IDPYLGDISLKRPLDYQALNKYNLRVIAKDKGEPPLHAEEEVVISVRNRSNPLFQSLYYR 2180

Query: 75   GYVSEAAP 82
              V E  P
Sbjct: 2181 VKVPENVP 2188


>gi|410949641|ref|XP_003981529.1| PREDICTED: protocadherin Fat 2 [Felis catus]
          Length = 4376

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +   NMAGA      +V+I+D NDN P F +  + G +SE
Sbjct: 1735 GLISTQKNLDHEKISSYQLKIRGINMAGAFTDVMALVYIIDENDNAPTFFKSVFVGQISE 1794

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + PLVIRA D+D E N+LL
Sbjct: 1795 AAPLYSMIVDENNNPLVIRASDRDEEANSLL 1825



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y+L + AT+           + + ++D NDN P F QLN
Sbjct: 3398 IHPKKGELQVAKALDWEQTSSYSLRLRATDSGRPPLHGDTDIAIQVVDVNDNPPRFFQLN 3457

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3458 YSTSVQENSPIGSKVL 3473



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 12/91 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            + ++K LD E T  Y L +TA++    K   SV+V I  LD NDN+P  +QL YTG VSE
Sbjct: 2993 IFSRKTLDREHTAKYLLRITASD---GKFQASVLVEIFVLDINDNSPQCSQLLYTGKVSE 3049

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G  +L        + A D DSETNA +
Sbjct: 3050 DISPGHFILQ-------VSATDLDSETNAQI 3073



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 8   FAILKPALHP----PY-GVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I +P   P    PY G++ T KP+DYE   RIY   V A++       +   S+ + +
Sbjct: 519 YSISRPKAVPFSIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRQEKEVSISLRL 578

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            + NDN P F Q+N TG + E  P+G  ++T +++
Sbjct: 579 KNLNDNKPMFEQVNCTGSIHEDWPVGKSLMTVSAI 613



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEATR Y L+VT  ++   +      + V++ D NDN P F    Y   V
Sbjct: 795 GLLTVAAPLDYEATRFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQITV 854

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE A +G  +         ++A+D DS+ N 
Sbjct: 855 SENAEVGTTIAE-------LKAKDADSDDNG 878



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2248 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSVS 2307

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2308 EGLPAQTPVIQ-------LLASDQDSGQN 2329



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL  +K +DYE+T+ Y + + A    N     ++ SV + + D NDN P F    Y   
Sbjct: 2773 GVLKVRKAMDYESTKWYQIDLMAHCPHNDTPLVSLVSVNIQVKDVNDNRPIFEADPYKAV 2832

Query: 77   VSEAAPIGALVLTNTS 92
            ++E  P+G  V+  T+
Sbjct: 2833 LTENMPVGTSVIQVTA 2848



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE  + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2354 GEMSTVQELDYETQQHFHVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2413

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2414 SELATCGHLVLK-------VQALDPDSRDTSRLE 2440



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQL 71
            P  G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P F   
Sbjct: 1001 PMTGALSLERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPRFASF 1060

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + G V E +P G  V       +V+ A D D   +  L
Sbjct: 1061 VHQGQVQENSPSGTQV-------MVVAAHDDDGGLDGEL 1092



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L   + LD+E +  + LSV  +    +    + +++V+I D N++ P F Q  YT  V
Sbjct: 3298 GILYVNRNLDFETSPKFFLSVECSRKGSSSLSDMTTIVVNITDVNEHRPRFPQDLYTTRV 3357

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VLT       + A D+D   N+ +
Sbjct: 3358 LENAAVGDVVLT-------VSATDEDGPVNSAI 3383



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI         G + T + LD E  + Y   V A +      + S   V V I D N
Sbjct: 2873 ELFAIDSET-----GWITTLQELDCETRQTYRFYVVAHDHGRTIQLSSQVLVEVSITDEN 2927

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G LV T  +L   +  +++
Sbjct: 2928 DNAPRFASEDYRGSVVENSEPGELVATLKTLDADVSEQNR 2967



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2558 PNGQITTLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2617

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2618 SIQSNVSKDSPV 2629



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            LHP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1212 LHPLTGLLSTARQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVRILDVNDNPPVFSH 1269



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E+   Y L+V A +       +V  V + + D NDN P  ++  +   V
Sbjct: 1112 GMIQTLAPLDRESVSCYWLTVLAVDRGSIPLSSVTEVYIEVKDVNDNPPRMSRPVFYPSV 1171

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+   VL        + A D DS +   L
Sbjct: 1172 REDAPLHTSVLQ-------LDAWDPDSSSKGKL 1197



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 25/54 (46%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E    Y+L   AT+  G      V +++ D NDN P F
Sbjct: 3087 LDPHTGELTTLTALDREKKDTYSLVAKATDGGGQSCQADVTLYVEDVNDNAPSF 3140



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K  D+     Y L +     +   A  +V++ I+D N
Sbjct: 420 VLKPSSESAGFRLNARTGLITTTKLRDFHDRAHYQLHI---RTSPGLASTTVVIDIVDCN 476

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P F + +Y G   E  P G  +LT       + A D+D   N  +
Sbjct: 477 NHAPIFNRSSYDGTFDENIPPGTSILT-------VTATDRDHGENGYI 517



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 131 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 187


>gi|7407144|gb|AAF61928.1|AF231022_1 protocadherin Fat 2 [Homo sapiens]
          Length = 4349

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDGGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2940



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   ++NL   AT+  G      + +H+ D NDN P F      
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRF------ 3113

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3114 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 3146



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTVVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPIFSH 1244



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|13787217|ref|NP_001438.1| protocadherin Fat 2 precursor [Homo sapiens]
 gi|296434503|sp|Q9NYQ8.2|FAT2_HUMAN RecName: Full=Protocadherin Fat 2; Short=hFat2; AltName:
            Full=Cadherin family member 8; AltName: Full=Multiple
            epidermal growth factor-like domains protein 1;
            Short=Multiple EGF-like domains protein 1; Flags:
            Precursor
          Length = 4349

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDGGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2940



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   ++NL   AT+  G      + +H+ D NDN P F      
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRF------ 3113

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3114 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 3146



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTVVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPIFSH 1244



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|119582077|gb|EAW61673.1| FAT tumor suppressor homolog 2 (Drosophila) [Homo sapiens]
          Length = 4349

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDGGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 41.2 bits (95), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2940



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   ++NL   AT+  G      + +H+ D NDN P F      
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRF------ 3113

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3114 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 3146



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTVVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPIFSH 1244



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|195354340|ref|XP_002043656.1| GM19748 [Drosophila sechellia]
 gi|194127824|gb|EDW49867.1| GM19748 [Drosophila sechellia]
          Length = 1591

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 9/114 (7%)

Query: 7   LFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
            F I+   +H      P  GV++    +DYE+ +++NL+V  TNMA   +  ++I+HILD
Sbjct: 878 FFNIISGNMHESFRINPSTGVIVINGNIDYESIKVFNLTVKGTNMAAESSCQNIIIHILD 937

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
            NDN PYF Q  Y G +SE+A IG+ VL    ++   L ++ +D D   N +++
Sbjct: 938 ANDNIPYFVQNEYVGALSESAAIGSYVLKVHDSSKDHLTLQVKDADVGVNGMVE 991



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRND 63
           +LF I K       G + T+  LDYE  +++NL V+A +       +  S+++ I+D N+
Sbjct: 229 ELFRIDKHT-----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNE 283

Query: 64  N--TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           N   P F    Y G + E  P G  V+  T+  +
Sbjct: 284 NRFAPEFDDFVYEGKIKENKPKGTFVMNVTARDM 317



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 20/114 (17%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTA-------TNMAGAKAVCSV 54
            +P QLF I +        GV+      D E   +Y L V A       TN    +AV S+
Sbjct: 1202 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSVLYDGTNSNVRRAVTSI 1256

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 1257 YISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAVDLDSAENG 1303



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 692 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 751

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+A IG+ +         +RA D+DS  NA
Sbjct: 752 PESAAIGSKLAE-------VRAIDRDSGHNA 775



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G +   KPLD E    Y L +TA +          +V++L  D NDN P F    Y   V
Sbjct: 132 GCIRLNKPLDREKQDNYALHITAKDGGNPMLSSEALVYVLVDDVNDNAPVFGVQEYIFKV 191

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G ++        VI A D+D   NA
Sbjct: 192 REDLPRGTVL-------AVIEAVDEDIGPNA 215


>gi|195496048|ref|XP_002095528.1| GE19644 [Drosophila yakuba]
 gi|194181629|gb|EDW95240.1| GE19644 [Drosophila yakuba]
          Length = 3884

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 9/114 (7%)

Query: 7    LFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
             F I+   +H      P  GV++    +DYE+ +++NL+V  TNMA   +  ++I+HILD
Sbjct: 943  FFNIISGNIHESFRINPSTGVIVINGNIDYESIKVFNLTVKGTNMAAESSCQNIIIHILD 1002

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
             NDN PYF Q  Y G +SE+A IG+ VL    ++   L ++ +D D   N +++
Sbjct: 1003 ANDNIPYFVQNEYVGELSESAAIGSYVLKVYDSSKDHLTLQVKDADVGVNGMVE 1056



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLD E    Y L + A +    +   SV   ++ILD NDN P F+  
Sbjct: 2622 SIEPKNGTISVSRPLDRETISHYTLEIQACDQGNPQRCNSVPININILDTNDNAPIFSSA 2681

Query: 72   NYTGYVSEAAPIGALVLT 89
            NY+  + E   +G + LT
Sbjct: 2682 NYSVVLQENRRLGYIFLT 2699



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L+    LDYE ++ Y L++ A +  G+  + +   V + ILD NDN+P F Q  Y   
Sbjct: 2523 GDLVLNATLDYEMSKFYFLTIQAID-GGSPPLSNNAYVNISILDINDNSPKFLQNLYRIN 2581

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V+E   +G+ +L        I+A D+DS+ N L+
Sbjct: 2582 VNEDIFVGSKILD-------IKATDEDSDVNGLV 2608



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   ++NL+V A +    K  ++ +V V+ILD NDN P F+   Y+  +
Sbjct: 2418 GIIRLDKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDVNDNPPEFSMRQYSCKI 2477

Query: 78   SEAAPIGALV 87
             E A  G  V
Sbjct: 2478 LENATHGTEV 2487



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   KPLD E    YNLS+ AT+     A  +V + + D NDNTPY  +  Y    +E
Sbjct: 2215 GELFIAKPLDREQIMFYNLSIIATD-GKFTAKANVEIDVNDINDNTPYCLKPRYHISTNE 2273

Query: 80   AAPIG 84
            +  IG
Sbjct: 2274 SISIG 2278



 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRND 63
           +LF I K       G + T+  LDYE  +++NL V+A +          S+++ I+D N+
Sbjct: 222 ELFRIDKHT-----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNE 276

Query: 64  N--TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           N   P F    Y G + E  P G  V+  T+  +
Sbjct: 277 NRFAPEFDDFVYEGKIKENKPKGTFVMNVTARDM 310



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G +   KPLD E   IY L +TA +          +V++L  D NDN P F    Y   V
Sbjct: 125 GCIRLNKPLDREKQDIYALHITAKDGGNPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKV 184

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            E  P G ++        VI A D+D   NA +  S
Sbjct: 185 REDLPRGTVL-------AVIEAVDEDIGPNAEIQFS 213



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 12/94 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  K PLDYE  + +++ V   +  G+ ++ S   V + + D NDNTP F + +Y   
Sbjct: 1594 GNLYLKTPLDYEQIKYHHVVVNVKDH-GSPSLSSRSNVFITVKDLNDNTPCFVEPSYFTK 1652

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
            +S AA  G  V    +LP   +A DKD S+T++L
Sbjct: 1653 LSVAAVRGQFV----ALP---KAYDKDISDTDSL 1679



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L  K LDYE  + YNL+++ T+        +++V ++D NDN P F +  Y   +SE
Sbjct: 654 GNILLSKYLDYETKQSYNLTISVTD-GTFTTFTNLLVQVIDINDNPPQFAKDVYHVNISE 712

Query: 80  AAPIGALVLTNTSLPLVIRAEDK 102
                ++++    L    R EDK
Sbjct: 713 NIEEESVIM---QLHATDRDEDK 732



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 757 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 816

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+A IG+ +         +RA D+DS  NA
Sbjct: 817 PESAAIGSKLAE-------VRAIDRDSGHNA 840



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 20/114 (17%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTAT-------NMAGAKAVCSV 54
            +P QLF I +        GV+      D E   +Y L V A        N    +AV  +
Sbjct: 1267 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYTLFVEAKSELYDGMNSNVRRAVTFI 1321

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 1322 DISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAVDLDSAENG 1368


>gi|326928556|ref|XP_003210443.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2-like [Meleagris
            gallopavo]
          Length = 4281

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L V  TNMAGA     V+++++D NDN P F +  + G++ E
Sbjct: 1717 GLISTQKSLDFEQVSFYQLKVRGTNMAGAFMDTMVLIYVIDENDNVPIFVKPAFIGWIME 1776

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP  ++VL  ++ PLV  A D D ++NALL
Sbjct: 1777 NAPPQSMVLDESNAPLVTHATDADQDSNALL 1807



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G +   K LD E    Y+L+V AT+       +  +V VH+ D NDN P F QL
Sbjct: 3379 AIQPKSGQISIAKHLDREEISSYSLTVRATDNGHPAQFSDVAVRVHVSDVNDNPPRFFQL 3438

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NY+  V E AP+G  VL      L++   D+DS  N 
Sbjct: 3439 NYSVVVQENAPVGTSVLE-----LIM--SDRDSPENG 3468



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KKPLD E T  Y L V A++    +A   V + +LD NDN+P   Q+ YTG VSE A  
Sbjct: 2975 SKKPLDREDTEKYLLKVMASD-GKFQATTEVEIFVLDINDNSPECGQIFYTGRVSEDAQP 3033

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        I A D D  +NA +
Sbjct: 3034 GHFILK-------ISATDPDVGSNAQI 3053



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYE T+ + + V A +  M    +   VIV + D NDN P F+QL Y   V
Sbjct: 2336 GQITTAQALDYEETQQFRMKVRAADHGMPPLSSDALVIVDVTDINDNPPEFSQLQYEAKV 2395

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G +V+   +L
Sbjct: 2396 SEMATCGHIVIKVQAL 2411



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL     LDYE    ++ +V AT+ A G+ +   V V + D NDN P F+++ YT  VS
Sbjct: 2230 GVLTVTGQLDYEIETKHSFTVRATDTALGSFSEARVEVEVEDINDNPPVFSEIIYTASVS 2289

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P    V+        I A DKDS  N ++
Sbjct: 2290 ENMPAHTPVVQ-------IFASDKDSGRNKMV 2314



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           IL+P        ++P  G++ T + LD+     + L V  T+   +    +V++ I+D N
Sbjct: 399 ILRPTPDSTNFKINPHTGLITTVRALDFHEQSNFQLEVATTS---SHTSATVVIDIIDCN 455

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P F+Q +Y G   E  P G  VLT       +RA D+D   N  +
Sbjct: 456 NHAPSFSQSSYRGAFDENVPPGTSVLT-------VRATDEDEGDNGFV 496



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L     LD+EA+  Y LS+  T    A    V  V+++I D ND+ P F Q  Y   +
Sbjct: 3280 GALYINGSLDFEASHEYYLSIEGTRKGSASLSDVTMVVINITDINDHAPEFIQDPYFADI 3339

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E A +G ++LT       + A+D D   N
Sbjct: 3340 REDAAVGEIILT-------VSADDLDGTMN 3362



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  +K LDYE    YNL+V  ++        ++C + V++LD N+N   P F    + 
Sbjct: 981  GALRLEKELDYEKKDSYNLTVQVSDSGKPVSRSSLCHLEVNVLDVNENLYPPRFASFVFK 1040

Query: 75   GYVSEAAPIGALVL 88
            G+V E +P G  V+
Sbjct: 1041 GWVQENSPEGTSVM 1054



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD+E T  Y L++T  ++   +     +  V++LD NDNTP F Q  Y   +
Sbjct: 772 GLLQVLSPLDHERTSFYILNITVYDLGTPQKSSWKLLAVNVLDTNDNTPRFPQGAYWVTI 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G  +         ++AED D++ N 
Sbjct: 832 PENVATGTTIAQ-------LKAEDADTDDNG 855



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD E    Y   V AT+      + S   V V + D NDN P FT   Y G 
Sbjct: 2862 GWITTLKELDCETQETYRFYVVATDHGRKVQLSSQTLVEVTVSDENDNAPQFTSDFYKGS 2921

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDK 102
            V E A  G +++T +++   I  +++
Sbjct: 2922 VIENAEPGQIIVTLSTIDADISEQNR 2947



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 18/123 (14%)

Query: 2    SHPVQLFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ IL+P       + P  G L ++  +DYE T +++ SV A +       A   
Sbjct: 1803 SNALLVYEILEPEALKYFTVDPSTGTLTSRADIDYELTPVFHFSVHARDSGNPSLFASKP 1862

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE-TNALL 110
              V +H+ D ND+ P F +  Y   V   A  G  +L+       ++A+D DSE T +++
Sbjct: 1863 AKVTIHVKDVNDSPPVFAKDTYELSVLLPAHPGMELLS-------VQAKDADSEVTYSIV 1915

Query: 111  DGS 113
            +G+
Sbjct: 1916 EGN 1918



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G L  KK +D+E T+ Y + V A      T +    ++ SV + + D NDN P F    Y
Sbjct: 2754 GALKIKKAVDHETTKWYQIDVMAHCSHLETELV---SLVSVNIQVQDINDNKPVFEADPY 2810

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +V E  P G  V+        + A D+D+ ++ 
Sbjct: 2811 RAFVMENMPSGTTVIQ-------VTANDQDTGSDG 2838



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T  PLD E    Y+L   AT+  G      +++ I D NDN P F       + S 
Sbjct: 3072 GELTTSAPLDREQKPTYHLVAKATDGGGRSCQADIMLTIEDTNDNAPRF-------FPSH 3124

Query: 80   AAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
             A +     T T  P+ V+ A D D   NA
Sbjct: 3125 CA-VAVFDNTTTKTPIAVVSARDLDEGLNA 3153



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 28  LDYEATRIYNLSVTAT-NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           L+ E    Y L + AT N    +A   V++HILDRND  P F+  +Y   + E  P+  +
Sbjct: 110 LNREVKDSYMLIIKATENTFAYEAWAKVLIHILDRNDLKPLFSPPSYKVSIREDTPLKTV 169

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
           V T       + A D D+  NA
Sbjct: 170 VST-------LSATDADAGQNA 184



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT--- 74
            G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT   
Sbjct: 2542 GHITTLQKLDRENSTERVIAIKVMAKDGGGKVAFCTVKIILTDENDNPPQFKASEYTLSI 2601

Query: 75   -GYVSEAAPI 83
               VS+ +P+
Sbjct: 2602 QSNVSKGSPV 2611



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 13  PALHPPY-GVLLTKKPLDYE-ATRIYNLSVTATNMAG-AKAVCSVIVHIL--DRNDNTPY 67
           P +  PY GV+ T K +DYE   R Y+L V A++     +    V V ++  + NDN P 
Sbjct: 507 PFVIDPYSGVISTSKSMDYELMQRWYHLRVWASDWGSPXRHETEVYVSLMLSNVNDNAPV 566

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSL 93
           F + + +G +    P+G  V T +++
Sbjct: 567 FEKASCSGSIPRDFPVGNPVATVSAI 592



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E T  Y L+V A ++      +   + + + D NDN P  ++  Y   V
Sbjct: 1089 GTIRTIGPLDREGTSHYWLTVLALDLGTVPLSSATEIYIEVTDTNDNPPQMSRPVYYASV 1148

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P       NTS+ L + A D DS +   L
Sbjct: 1149 MENSP------PNTSV-LQLDALDPDSSSEGKL 1174



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 30/68 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKPLDY A   Y+L V A +      +    V I  RN + P F  L Y 
Sbjct: 2125 IDPYLGDISLKKPLDYHALNKYSLRVIAKDNGEPPLLAEEEVVISVRNKSNPLFQSLYYR 2184

Query: 75   GYVSEAAP 82
              V E  P
Sbjct: 2185 VKVPENIP 2192


>gi|296193285|ref|XP_002806645.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2 [Callithrix
            jacchus]
          Length = 4349

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLMSTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDWEQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   SV + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSVFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +K +D+E+T++Y + V A  +     V   SV + ++D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKTMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVIDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E    Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHMAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDADTNAQI 3046



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALSLERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAAHDDDSGLDGEL 1067



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T  PLD E   ++NL V AT+  G      V +H+ D NDN P F
Sbjct: 3060 LDPHTGELTTLTPLDRERKDVFNLVVKATDGGGRSCQADVTLHVEDVNDNAPRF 3113



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQSQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A  G LVL        ++A D DS   + L
Sbjct: 2389 SELATCGHLVLR-------VQAIDPDSRDTSRL 2414



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + YN  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYNFHVVAYDHGRTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVIENSEPGELVATLKTLDADISEQNR 2940



 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYE T  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTIAAPLDYETTNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  T  + +    + +V+V+I D N++ P F Q  Y   V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECTRKSSSSLSDITTVVVNITDVNEHRPRFPQDPYNTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  ++  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSRAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDASDPDSSSKGKL 1172



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMAQDGGGRVAFCTVKIILTDENDNPPQFKASAYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENLGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTVVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  VL  T       A D+D   N 
Sbjct: 453 NHAPVFNRSSYDGTLDENIPPGTSVLAAT-------ATDQDHRENG 491



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDTPL 163



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTARQLDRENKDEHILEVTVLDNGEPPLKSTSRVVVGILDINDNPPAFSH 1244



 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +        + V    +   +    V +H+ + N + PYFTQL
Sbjct: 1499 LDPSSGVLVTVGKLDLRSGPSQHTLTVMVRDQEIPIKRNFVWVTIHVENGNLHPPYFTQL 1558

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   V +    G  +L        +RA D D   NA
Sbjct: 1559 HYEASVPDTTAPGTELLQ-------VRAMDADRGANA 1588


>gi|194874570|ref|XP_001973423.1| GG16079 [Drosophila erecta]
 gi|190655206|gb|EDV52449.1| GG16079 [Drosophila erecta]
          Length = 4446

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 9/114 (7%)

Query: 7    LFAILKPALH------PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
             F I+   +H      P  GV++    +DYE+ +++NL+V  TNMA   +  ++I+HILD
Sbjct: 1601 FFNIISGNIHESFRINPSTGVIVINGNIDYESIKVFNLTVKGTNMAAESSCQNIIIHILD 1660

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
             NDN PYF Q  Y G +SE+A IG+ VL    ++   L ++ +D D   N +++
Sbjct: 1661 ANDNIPYFVQNEYVGALSESASIGSYVLKVYDSSKDHLTLQVKDADVGVNGMVE 1714



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLD E    Y L + A +    +   SV   ++ILD NDN P F+  
Sbjct: 3188 SIDPKNGTISVSRPLDRETIPHYTLEIQACDQGNPQRCNSVPININILDTNDNAPIFSSA 3247

Query: 72   NYTGYVSEAAPIGALVLT 89
            NY+  + E  P+G + LT
Sbjct: 3248 NYSVVLQENRPLGYVFLT 3265



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
           ++P  G+L T K LD E    Y L+V+A + A  G++   S  V + + D NDN P F  
Sbjct: 447 INPDSGMLYTAKQLDAEKKSSYTLTVSAIDQANVGSRKQSSAKVKISVQDMNDNDPIFEN 506

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N    ++E    G+ V+        + A+D+DS  N+ +
Sbjct: 507 VNKVISINENNLAGSFVVK-------LTAKDRDSGENSYI 539



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L+    LDYE ++ Y L++ A +  G   + +   V + ILD NDN+P F Q  Y   
Sbjct: 3089 GDLVLNATLDYEMSKFYFLTIQAID-GGTPPLSNNAYVNISILDINDNSPKFLQNLYRVN 3147

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V+E   +G+ +L        I+A D+DS+ N L+
Sbjct: 3148 VNEDIFVGSKILD-------IKATDEDSDINGLV 3174



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   ++NL+V A +    K  ++ +V V+ILD NDN P F+   Y+  +
Sbjct: 2984 GIIRLDKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPEFSMRQYSCEI 3043

Query: 78   SEAAPIGALV 87
             E A  G  V
Sbjct: 3044 LENATHGTEV 3053



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRND 63
           +LF I K       G + T+  LDYE  +++NL V+A +          S+++ I+D N+
Sbjct: 880 ELFRIDKHT-----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNE 934

Query: 64  N--TPYFTQLNYTGYVSEAAPIGALVL 88
           N   P F    Y G + E  P G  V+
Sbjct: 935 NRFAPEFDDFVYEGKIKENKPKGTFVM 961



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LDYE  + YNL+++ T+      + +++V ++D NDN P F +  Y   +SE
Sbjct: 1312 GNILLSKYLDYETKQFYNLTISVTD-GTFTTLTNLLVQVIDINDNPPQFAKDVYHVNISE 1370

Query: 80   AAPIGALVLTNTSLPLVIRAEDK 102
                 ++++    L    R EDK
Sbjct: 1371 NIEEESVIM---QLHATDRDEDK 1390



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 17/110 (15%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T   LD+E   R Y L + A++       +    + + + D NDN P F ++N  G
Sbjct: 558 GIVKTTSLLDFETMKRNYELIIRASDWGLPYRRQTEIKLSIVVKDINDNRPQFERVNCYG 617

Query: 76  YVSEAAPIGALVLT---NTSLPL-----VIRAEDKDSETN-----ALLDG 112
            V+++AP+G  V     N S+ L      I A+D+D   N     A+LDG
Sbjct: 618 KVTKSAPMGTEVFELSINESVQLGETVAWIEAKDRDLGYNGKLVFAILDG 667



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 20/114 (17%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTAT-------NMAGAKAVCSV 54
            +P QLF I +        GV+      D E   +Y L V A        N    +AV S+
Sbjct: 1924 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSVLYDGMNSNVRRAVTSI 1978

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 1979 YISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAVDLDSAENG 2025



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  K PLDYE  + +++ V   +  G+ ++ S   V + + D NDN P F + +Y   
Sbjct: 2251 GNLYLKTPLDYEQVKYHHVVVNVKDH-GSPSLSSRSNVFITVKDLNDNAPCFVEPSYFTK 2309

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
            +S AA  G  V    +LP   +A DKD S+T++L
Sbjct: 2310 LSVAAVRGQFV----ALP---KAYDKDISDTDSL 2336



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 1415 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 1474

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+A IG+ +         +RA D+DS  NA
Sbjct: 1475 PESAAIGSKLAE-------VRAIDRDSGHNA 1498


>gi|395817724|ref|XP_003782306.1| PREDICTED: protocadherin Fat 2 [Otolemur garnettii]
          Length = 4316

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y+L +  +NMAG      V+V I+D NDN P F +  + G +SE
Sbjct: 1709 GLISTQKNLDHEKISSYHLKIRGSNMAGTFTDVMVLVDIIDENDNAPMFLKSTFVGQISE 1768

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++ N + P VI A D D E N+LL
Sbjct: 1769 AAPLYSMIMDNNNNPFVIHASDSDKEANSLL 1799



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E T  Y+L + AT+           + V ++D NDN P F QLN
Sbjct: 3372 IHPKKGELQVAKALDWEQTSSYSLRLRATDSGQPPRHEDTDITVQVVDVNDNPPRFFQLN 3431

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG  VL
Sbjct: 3432 YSTTVQEYSPIGNKVL 3447



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   SV + + + NDN P F 
Sbjct: 505 SIDPYLGIISTSKPMDYELMRRIYTFRVRASDWGSPFRREKEVSVSLQLKNLNDNQPVFE 564

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  V+T +++
Sbjct: 565 EVNCTGSIRQDWPVGKSVMTMSAI 588



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L +TA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2969 SRKTLDREHTAKYLLRITASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVREDVFP 3027

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G L+L        + A D D++TN  +
Sbjct: 3028 GHLILK-------VFATDLDTDTNGQI 3047



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F QL YT  +S
Sbjct: 2222 GVLSVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFPQLVYTTSIS 2281

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2282 EGLPAQTPVIQ-------LLASDQDSGKN 2303



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYE T  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 769 GLLTVASPLDYEVTNFYILNVTVFDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE A +G  +         ++ ED DSE N 
Sbjct: 829 SEDAEVGTTIAE-------LKTEDADSEDNG 852



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPY 67
            +L    GV+  +KP+D+E+T++Y + V A      T++    ++ +V + + D NDN P 
Sbjct: 2741 SLESDTGVIKVRKPMDHESTKLYQIDVMAHCPHKDTDLV---SLVTVNIQVKDVNDNRPV 2797

Query: 68   FTQLNYTGYVSEAAPIGALVLTNTSL 93
            F    Y   ++E  P+G  V+  T++
Sbjct: 2798 FEADPYKAVLTENMPVGTSVIQATAI 2823



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P F    + 
Sbjct: 978  GALSLERELDFEKRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPRFASFVHQ 1037

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            G V E +P G  V       +V+ A D DS
Sbjct: 1038 GQVQENSPSGTQV-------VVVAAHDDDS 1060



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V+V I D N
Sbjct: 2847 ELFAIDSES-----GWITTLQELDCETRQTYHFYVVAYDHGQTVQLSSQALVVVSITDEN 2901

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   NY G V E +  G  V+T  +L   I  +++
Sbjct: 2902 DNPPRFASENYKGSVVENSEPGEPVVTLKTLDADISEQNR 2941



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F +  Y   V
Sbjct: 2328 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFREPQYKANV 2387

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D D+   + L+
Sbjct: 2388 SELATCGHLVLK-------VQALDPDNRDTSRLE 2414



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 17/108 (15%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           ILKP+       L+P  G++ T K LD+     Y L +     +   +  +V++ I+D N
Sbjct: 395 ILKPSSESAGFKLNPRTGLITTTKLLDFHDRAHYQLHI---RTSPGLSSTTVVIDIVDCN 451

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ P F + +Y G + E  P G  VLT       + A D+D   N  +
Sbjct: 452 NHAPIFNRSSYDGTLDENIPPGTSVLT-------VAATDRDHGENGFI 492



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   +Y+L   AT+  G      V +H+ D NDN P F      
Sbjct: 3061 LDPHTGELTTLTALDRERKDVYSLIAKATDGGGRSCQADVTLHVEDVNDNAPRF------ 3114

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D  TNA
Sbjct: 3115 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGTNA 3147



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 12   KPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
            K ++HP  G + T + LD E +  R+ ++ V A +  G  A C+V + + D NDN P F 
Sbjct: 2527 KFSIHPS-GQITTLQKLDRENSTERVIDIKVMAQDGGGRVAFCTVKIILTDENDNPPQFK 2585

Query: 70   QLNYT 74
               YT
Sbjct: 2586 ASEYT 2590



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  ++  +   V
Sbjct: 1086 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDVNDNPPQMSRAVFYPSV 1145

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P+G  VL        + A D DS +   L
Sbjct: 1146 WEDVPVGTSVLQ-------LDAWDPDSSSKGKL 1171



 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   + LD+E +  Y LS+       +      +++V+I D N++ P F Q  Y+  V
Sbjct: 3272 GVLYVNQSLDFETSPKYFLSIECNRKSSSSLSDTTTIVVNITDVNEHRPRFLQGLYSTRV 3331

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G ++LT       + A D+D   N+ +
Sbjct: 3332 LENAILGDVILT-------VSATDEDGPQNSAI 3357



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE    +  SV   +       A     VI+
Sbjct: 1800 VYKILEPEALKFFKIDPSMGTLTIVSEMDYETMPSFQFSVYVHDQGSPILFAPRPAQVII 1859

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            ++ D ND+ P F +  Y   V     +G  +LT       ++A D DSE N
Sbjct: 1860 NVRDVNDSPPRFLEQIYEIAVVGPVHLGMELLT-------VQARDDDSEIN 1903


>gi|426350687|ref|XP_004042901.1| PREDICTED: protocadherin Fat 2 [Gorilla gorilla gorilla]
          Length = 4349

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2940



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   ++NL   AT+  G      + +H+ D NDN P F      
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRF------ 3113

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3114 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 3146



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPILFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYT 2591



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G ++LT       + A D+D   N+
Sbjct: 3331 LENVLVGDVILT-------VSATDEDGPLNS 3354



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTMVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPIFSH 1244



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|332234442|ref|XP_003266417.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2 [Nomascus
            leucogenys]
          Length = 4007

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIHQDWPVGKSIMTMSAI 589



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 2400 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2459

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2460 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2485



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3030 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3089

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3090 YSTTVQENSPIGSKVL 3105



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2627 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 2685

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 2686 GHFILK-------VSATDLDTDTNAQI 2705



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAARDDDSGLDGEL 1067



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 1988 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2047

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2048 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2074



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  V   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTVAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2505 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2559

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2560 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2599



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 2930 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRV 2989

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 2990 LENALVGDVILT-------VSATDEDGPLNS 3013



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       +     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPILFSPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 2192 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYT 2250



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   ++NL   AT+  G      V +++ D NDN P F      
Sbjct: 2719 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADVTLYVEDVNDNAPRF------ 2772

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 2773 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 2805



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A  +V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTTVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPVFSH 1244


>gi|397517685|ref|XP_003829037.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2 [Pan paniscus]
          Length = 4349

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFFKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPCI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2940



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   ++NL   AT+  G      + +H+ D NDN P F      
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRF------ 3113

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3114 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 3146



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPILFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P+F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPHFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G ++LT       + A D+D   N+
Sbjct: 3331 LENVLVGDVILT-------VSATDEDGPLNS 3354



 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCMVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENAGFKLNAQTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTMVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKEEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPVFSH 1244



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|114602953|ref|XP_001168406.1| PREDICTED: protocadherin Fat 2 [Pan troglodytes]
          Length = 4349

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1710 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFFKSTFVGQISE 1769

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2800

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD E    Y+L + AT+           + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2940



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T   LD E   ++NL   AT+  G      + +H+ D NDN P F      
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRF------ 3113

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D   NA
Sbjct: 3114 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 3146



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSDMDYESMPSFQFCVYVHDQGSPILFAPRPAQVII 1860

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            H+ D ND+ P F++  Y     E A +G  +     L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  +  + +    V +V+V+I D N++ P F Q  Y+  V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRV 3330

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G ++LT       + A D+D   N+
Sbjct: 3331 LENVLVGDVILT-------VSATDEDGPLNS 3354



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTVVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPVFSH 1244



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|47227102|emb|CAG00464.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2970

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 58/91 (63%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+ T+K LD+E T  Y L V A +M   +A  +V V + D NDN+P F QL Y G +SE
Sbjct: 431 GVINTRKLLDFEQTPSYFLVVHALSMTRMEASTTVTVQVGDVNDNSPVFQQLRYVGTISE 490

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           AAP+ ++VL +   PLVI+A D D   NALL
Sbjct: 491 AAPVNSVVLGDDGNPLVIQATDMDRNHNALL 521



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH----ILDR 61
            +LF+I      P  G+++ +K LD E+   Y L V AT+ AG +   S  V+    +LD 
Sbjct: 1924 ELFSI-----DPVSGMVVLEKSLDRESQDSYRLRVQATDQAGQRGALSTQVNLTILVLDV 1978

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLT--NTSLPLVIRAE 100
            NDN P F + +Y   V E   +G  VL    TS+ + + AE
Sbjct: 1979 NDNAPVFQRRDYGVTVPEDVAVGTEVLRVLATSVDIGLNAE 2019



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           ++P  G++ T   LDYEA    I  + V        + +  ++V + D NDN PYFT   
Sbjct: 224 VNPGTGIVYTTDRLDYEARTQHILTIMVKDQEFPFNRDLARILVAVEDSNDNIPYFTSTV 283

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y     E++P G  VL  T+L       DKD+  N  L
Sbjct: 284 YDAVAYESSPFGTSVLQVTAL-------DKDNGINGQL 314



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   KPLDYE   I+   V  T   ++  A     + V ILD NDN P F    Y   
Sbjct: 1511 GLIRLSKPLDYEEVSIFRFKVAVTTRRDLIEAVTTVDLEVKILDVNDNNPLFETNTYVAT 1570

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  PIG  V+        +RA D D   N 
Sbjct: 1571 VMEGMPIGTRVVQ-------VRALDPDWGANG 1595



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L+  KPLD E   +YN++V  T+     A   V + + D NDN P F+Q  Y   VSE
Sbjct: 126 GTLIVAKPLDAEVQSVYNMTVQVTDGTNF-ATAQVFIRVQDGNDNPPVFSQPAYDVSVSE 184

Query: 80  AAPIGALVLTNTSLPLV-IRAEDKDSE 105
             P+         + LV +RA D D  
Sbjct: 185 DIPV--------DMELVRVRASDMDER 203



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     LD+E  + Y L++ A +       +   V + ++D NDN P F+Q  Y   V
Sbjct: 2040 GSIFVADDLDFEVCKDYYLTIEAWDGGNPPLSSATVVTIDLMDVNDNAPTFSQDIYNVLV 2099

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A +G +V         + AED DS+ N  +
Sbjct: 2100 SEDASVGQMVTR-------VSAEDLDSQGNGRI 2125



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 8/85 (9%)

Query: 27   PLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            PLDYE T+ Y L+V AT+   GAK+   V V +LD NDN P F   +Y+  + E   IG 
Sbjct: 962  PLDYETTQYYRLTVKATDTQTGAKSEVDVDVVVLDVNDNAPLFQNTSYSSVLPENVMIGT 1021

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + A+D+DSE NA++
Sbjct: 1022 TVLK-------VFAQDQDSEKNAIV 1039



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+    G + T   +D+EA   Y+  V A+++   +++ S   V + + D NDN P F +
Sbjct: 1616 AIDSKTGWITTVSEMDHEACSSYSFEVVASDLGELRSLSSTTVVTIAVSDCNDNPPRFER 1675

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              Y G V E+  +G +V        V++  D+D
Sbjct: 1676 ELYRGAVKESDSLGEVV-------AVLKTSDRD 1701



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G+L   K LD E    Y+LSV A + +G+ A+ S +   + I D NDN+P FT  
Sbjct: 2140 IDPVTGILKVNKRLDRELVSRYSLSVQAFD-SGSPAMSSTVTLNIDISDINDNSPVFTPP 2198

Query: 72   NYTGYVSEAAPIGALVLTNTSLPL 95
            N T  +   AP   LV   + + L
Sbjct: 2199 NSTAIIQVPAPALLLVFVRSYISL 2222



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYN---LSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++ T + LD E   +Y    L+V A +  G  + CSV V + D NDN P F  + Y   
Sbjct: 1297 GIISTLEKLDRE-NPLYKDMVLTVMALDGGGRASFCSVRVILADENDNPPRFRAVEYRMS 1355

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +      G+LV         I+A D D+ +N  +
Sbjct: 1356 IKANVAKGSLVTQ-------IQASDPDAGSNGRI 1382



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L T   +D E T  Y L   AT+  G      + + +LD NDN P F+  +Y   V E
Sbjct: 1832 GELRTATIMDRETTPSYKLIAQATDGGGLFCRSDISLKVLDVNDNAPTFSSPHYLASVYE 1891

Query: 80   -AAPIGALVLTNTSLP 94
             AAP   L     S P
Sbjct: 1892 NAAPKALLTRLQASDP 1907


>gi|344252729|gb|EGW08833.1| Protocadherin Fat 2 [Cricetulus griseus]
          Length = 3133

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +N AG  +     V+I+D NDN P F +  + G++SE
Sbjct: 940  GLISTQKRLDHEKISSYQLKIRGSNTAGVFSEVVAFVYIIDENDNAPAFLKSTFVGHISE 999

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP  +++L   + PLVIRA D D E N+LL
Sbjct: 1000 AAPPHSMILDEDNSPLVIRASDSDQEANSLL 1030



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G L   K LD+E T  Y+L + AT+           V V ++D NDN P F QLN
Sbjct: 2555 INPKKGKLQVAKALDWEQTPSYSLKLRATDSGQPPMHKDTEVAVEVVDVNDNPPRFFQLN 2614

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  V E +PIG     N  L L++  +D DS  N 
Sbjct: 2615 YSTAVQENSPIG-----NKVLQLIL--DDPDSPQNG 2643



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFT 69
           + P  G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N  +P+F+
Sbjct: 204 VEPMTGALSLERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVLVLDVNENLHSPHFS 263

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y G V E +P G  V       +V+ A+D+D   +  L
Sbjct: 264 SFVYQGQVQENSPAGTQV-------MVVTAQDEDGGLDGEL 297



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 1453 GVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 1512

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 1513 EGLPAQTPVIQ-------LLASDQDSGKN 1534



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KK LD E    Y L VTA++     +V  V V +LD NDN+P  +QL YTG V E    
Sbjct: 2172 SKKTLDREHIAKYLLRVTASDGKFQTSV-PVEVFVLDINDNSPQCSQLLYTGRVHEDVTP 2230

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D +TNA +
Sbjct: 2231 GHFILK-------VSAVDADMDTNAQI 2250



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + + + V A +           V+V++ D NDN P F +  Y   V
Sbjct: 1559 GEMFTIQELDYEAQQHFQVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFREPQYEANV 1618

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G LVL   +L
Sbjct: 1619 SELATCGHLVLKVQAL 1634



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFA+   +     G + T K LD E  +IY+  V A +      + S   V V I D N
Sbjct: 2050 ELFAVDNES-----GWITTLKELDCETQQIYHFYVVAFDHGQTIQLSSQALVEVSITDEN 2104

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G LV T  +L   I  +++
Sbjct: 2105 DNPPRFASEDYRGSVVENSEPGELVATLKTLDADISEQNR 2144



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   IYNL   AT+  G      V +HI D NDN P F
Sbjct: 2264 LDPHTGELTTLTALDRERKDIYNLVAKATDGGGQSCQADVTLHIEDVNDNAPRF 2317



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  +K +D+E+T+ Y + + A      T++    ++ SV + + D NDN P F    Y
Sbjct: 1950 GVLKVRKAMDHESTKWYQIDLMAHCPHEDTDLV---SLVSVNIQVEDVNDNRPVFEADPY 2006

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +++E  P G  V+        + A D+D+ ++ 
Sbjct: 2007 KAFLTENMPGGTTVIQ-------VTANDQDTGSDG 2034



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIV 56
            ++ IL+P       + P  G L   + LDYE T ++  +V      T +  A     VI+
Sbjct: 1031 VYKILEPEALKFFKIDPSMGTLTITEELDYENTPLFQFNVYVHDQGTPLLFAPRPAKVII 1090

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSE 105
            H+ D ND +P F++  Y     E A +G    T+  + L+ ++A+D DSE
Sbjct: 1091 HVRDVNDFSPRFSEQIY-----EVAVVGP---THPGMKLLTVQAKDDDSE 1132



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L T  PLD E T  Y L+V A +       AV  V + + D NDN P  ++  +   V
Sbjct: 317 GMLETLVPLDREFTPYYWLTVLAVDRGSVPLSAVTEVYIEVTDINDNIPCMSRPVFYPCV 376

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P+G  VL        + A D DS +   L
Sbjct: 377 QEDVPLGTSVLQ-------LEAWDPDSSSQGKL 402



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 1735 PSGQITTLQKLDRENSTERVIAIKVMARDGGGKVAFCTVKIILTDENDNAPQFKASGYT 1793



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E T  Y LS+  +  + +    V +++V++ D N++ P FT   YT  V
Sbjct: 2455 GILYVNGSLDFETTPKYFLSIECSRKSSSSLSDVTTIVVNVTDVNEHHPRFTHDLYTVRV 2514

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E A +G  +LT       + A D+D   N
Sbjct: 2515 LENAVVGDTILT-------VSAFDEDGPIN 2537



 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
           +HP  GVL T + LD E    + L VT  +      K+   V+V ILD NDN P F+   
Sbjct: 417 IHPFTGVLTTARQLDRENKDEHVLEVTVLDNGEPPLKSTSRVVVCILDVNDNPPMFSHKL 476

Query: 73  YTGYVSE------AAPIGALVLTN 90
           +   + E      A P+ +LV ++
Sbjct: 477 FNVRLPERLSPLSAGPVYSLVASD 500



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 15  LHPPYGVLLTKKPLDYEAT---RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           L P  GVL+T   LD  +     I  + V    M   +    V +H+ D N + P+FTQL
Sbjct: 729 LDPSSGVLVTVGRLDLHSQPSQHILVVMVRDQEMPIKRNFVWVTIHVEDGNLHPPHFTQL 788

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +Y   V +    G  +L        +RA D D   NA
Sbjct: 789 HYEANVPDTTAPGTELLQ-------VRAMDADRGANA 818



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 29/65 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKP DY+A   Y+L V A +         V VH+  RN + P F    Y 
Sbjct: 1348 IDPYVGDISLKKPFDYQALNKYHLKVIARDAGTPPLQTEVEVHVTVRNKSNPLFQSPYYK 1407

Query: 75   GYVSE 79
              V E
Sbjct: 1408 VKVPE 1412


>gi|405973235|gb|EKC37959.1| Protocadherin Fat 1 [Crassostrea gigas]
          Length = 3515

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 59/97 (60%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +++P  GV+  K  +DYE   +Y L+V ATN  G   + SV +H+LD NDN PYFT+  Y
Sbjct: 566 SVNPNSGVVYLKGRMDYETLDLYKLTVLATNNVGKFDMTSVWIHVLDANDNEPYFTKTFY 625

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           TG +SE +   +LVL     PLVI A D D+  NA L
Sbjct: 626 TGSLSENSLPESLVLGIDGKPLVITARDDDTNENAQL 662



 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 55/90 (61%), Gaps = 8/90 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G++    PLDYE+T++Y+L+V AT+ ++G+     + V++LD ND +P FT   YT  +S
Sbjct: 1102 GIISLTTPLDYESTKVYSLTVRATDVLSGSYGETKLQVNVLDVNDKSPSFTHYKYTKIIS 1161

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            EAAP+G  VL        + A D DS  NA
Sbjct: 1162 EAAPVGTSVLK-------VTATDADSGINA 1184



 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 1/75 (1%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P YG +LT K LD E    YNL+V AT+     +V  V V +LD NDNTP FTQ  Y 
Sbjct: 259 INPEYGSILTSKRLDREKRDHYNLTVMATDGIHQTSV-KVYVTVLDINDNTPEFTQSEYK 317

Query: 75  GYVSEAAPIGALVLT 89
             +SE+A IG+ VLT
Sbjct: 318 ADISESAAIGSSVLT 332



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 13/108 (12%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL-- 59
            S  + +F I     +P  GVL T + LD+E T+ Y   V AT+        SV VHI+  
Sbjct: 1196 SRSINIFQI-----NPITGVLRTARLLDFEDTQEYLFHVVATDGGLPSLNMSVPVHIIVS 1250

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            D NDN PYF Q  Y+G V+   P G +V+  T+  L     DK S+ N
Sbjct: 1251 DLNDNPPYFDQPTYSGVVTNPTP-GLMVIKVTASDL-----DKCSQEN 1292



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYF 68
            +K  +    GV+     LD E T +Y L+V AT+++ +    S  V ++I D NDN P+F
Sbjct: 2135 MKFVIDESEGVIRVANDLDREVTSVYFLTVMATDLSDSPLSSSTYVRINITDVNDNKPFF 2194

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Q +Y   + E   +G LV         + A D D   NALL
Sbjct: 2195 SQASYRTSLLEDTAVGQLVYQ-------VHANDTDEGQNALL 2229



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 15/105 (14%)

Query: 7   LFAILKPALHPPYGVL-LTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRND 63
           +F ++K +     GVL  T KP D E    Y +     +++G +    +++HI  LD ND
Sbjct: 877 MFDVVKTS-----GVLQTTGKPFDREERDHYKVIALVEDLSGKQKPLHILIHISILDEND 931

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           N P F    Y   VS     G++V   T++       D+D++ N 
Sbjct: 932 NAPLFVNQPYDTVVSTDTKQGSIVTQVTAI-------DRDADLNG 969



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
            G +     LD E   +YNL+V A    G      +  +V V + D NDN P F+Q  Y  
Sbjct: 1731 GWITLVSELDREKQEVYNLTVQAEQKFGMSTQVVSNSTVTVTVTDCNDNPPVFSQAQYQT 1790

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             V+E A  G +        L ++  D D+++N
Sbjct: 1791 AVNEDALSGTVF-------LALKTTDADAKSN 1815



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G+L  K  LD E    +++ V+A +  G      + + + D NDN P F  L     + E
Sbjct: 1939 GILTPKVELDRETQSHHHVVVSAVDGGGLSCDVDIYIELSDVNDNAPEFVDLPEKFGLLE 1998

Query: 80   AAPIGALVLTNTSLPLVIRAEDKD 103
            +A +  L+L        I AED+D
Sbjct: 1999 SATVNTLLLR-------ITAEDRD 2015



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KP+D E    Y L+V A +       +  ++ + ILD NDN P F    Y   V
Sbjct: 2039 GIIKLMKPVDREEIPQYILNVYAYDQGIPSLTSTATLTIEILDENDNPPEFVLSQYAAAV 2098

Query: 78   SEAAPIGALVL 88
             E A +G  V+
Sbjct: 2099 PENATVGTEVV 2109



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +  ++  D E    Y+++V AT+  G     +V+V+I D ND  P F    +TGY   
Sbjct: 1415 GEIFAERLFDREEQSSYSVTVAATDNGGRMGFTTVVVNITDVNDVAPEFL---HTGY-KV 1470

Query: 80   AAPIGALVLTNTSLPLV-IRAEDKD 103
            + P+ A        PL+ ++A D D
Sbjct: 1471 SVPMNA----GKGRPLIQVQARDSD 1491



 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G +  + PLD E    Y L   +  + +    +   V V I D ND  P F++ +
Sbjct: 2244 IHPVTGEISIRTPLDREMIDKYKLVVEIRDSGLPPLSSTAVVTVDIEDVNDCPPLFSESS 2303

Query: 73   YTGYVSEAAPIGALVL 88
            Y   V E   +G  +L
Sbjct: 2304 YNATVQEDQYVGYKIL 2319


>gi|410915852|ref|XP_003971401.1| PREDICTED: protocadherin Fat 3-like [Takifugu rubripes]
          Length = 4766

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/91 (48%), Positives = 58/91 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+K LD+E T  Y L V A +M   +A  +V V + D NDN+P F QL Y G +SE
Sbjct: 1714 GVINTRKRLDFEQTPSYFLVVRALSMTRMEASTTVTVQVGDVNDNSPVFQQLRYVGTISE 1773

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++VL +   PLVI+A D D   NALL
Sbjct: 1774 AAPVNSVVLGDDGNPLVIQATDLDRNHNALL 1804



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   KPLDYE   I+   V AT   ++  A     + V ILD NDN P F    Y   
Sbjct: 2766 GLIRLTKPLDYEEVSIFRFKVAATTRRDLIEAVTTVDLEVKILDVNDNKPMFETNTYVST 2825

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P+G  V+        +RA D D  +N 
Sbjct: 2826 VMEGMPVGTRVVQ-------VRALDPDWGSNG 2850



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L+  KPLD E   +YN++V  T+     A   V + + D NDN P F+Q  Y   VSE
Sbjct: 1406 GTLIVAKPLDAEVQSVYNMTVQVTDGTNF-ATTQVFIRVQDSNDNPPVFSQPAYDVSVSE 1464

Query: 80   AAPI 83
              P+
Sbjct: 1465 DVPV 1468



 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G++ T   LDYEA    I  + V        + +  ++V + D NDN PYFT   
Sbjct: 1504 VNPGTGIVYTTDRLDYEARTQHILTIMVKDQEFPFNRDLARILVAVEDSNDNIPYFTSTV 1563

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y     E++P G  VL  T+L       DKD+  N  L
Sbjct: 1564 YDATAYESSPSGTSVLQVTAL-------DKDNGINGQL 1594



 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH----ILDRNDNTPYFT 69
            ++ P  G+++ +K LD E+   Y L V AT+ AG +   S  V+    +LD NDN P F 
Sbjct: 3196 SIDPVSGMVILEKSLDRESQDSYRLRVQATDQAGQRGALSSQVNLTILVLDVNDNAPVFQ 3255

Query: 70   QLNYTGYVSEAAPIGALVLT--NTSLPLVIRAE 100
            + +Y   V E   +G  VL    TS+ + + AE
Sbjct: 3256 RRDYGVTVPEDVAVGTEVLRVLATSVDIGLNAE 3288



 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G +    PLDYE T+ Y L+V AT+ + GAK+   V V +LD NDN P F   +Y+  + 
Sbjct: 2241 GTISVIYPLDYETTQYYRLTVKATDTLTGAKSEVDVDVVVLDVNDNPPLFQNTSYSSVLP 2300

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E + IG  VL        + A+D+DSE NAL+
Sbjct: 2301 ENSMIGTTVLK-------VIAQDQDSEKNALV 2325



 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           L+ E    Y L++ A+   G +A+ +V + +LD ND  P F+  +Y+  V E+AP+GA V
Sbjct: 117 LNREVQDSYTLTIKASAQRGLEALATVYIRVLDTNDLRPLFSPTSYSFVVPESAPLGASV 176



 Score = 43.5 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 14/103 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     LD+E  + Y L++ A +       +   V + ++D NDN P F+Q  Y   V
Sbjct: 3309 GAIFVADDLDFEVCKDYYLTLEAWDGGNPPLSSATVVTIELMDVNDNAPTFSQDIYNVLV 3368

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
            SE A +G +V         + AED DS+ N     ++L G  N
Sbjct: 3369 SEDASVGQMVTR-------VSAEDLDSQVNGRITYSILKGDRN 3404



 Score = 42.4 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G+L   K LD E    Y+LSV A + +G+ A+ S +   + + D NDN P FT  
Sbjct: 3409 IDPVTGILKVNKRLDRELVSRYSLSVQAFD-SGSPAMSSTVTLNIDLSDVNDNPPAFTPP 3467

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N T  +    P G+ +L        +   DKDS  N 
Sbjct: 3468 NSTAIIQLNQPAGSTMLK-------LSVTDKDSPRNG 3497



 Score = 40.8 bits (94), Expect = 0.094,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L +   +D E T  Y L   AT+  G    C + + +LD NDN P F+  +Y   V E
Sbjct: 3100 GELRSATVMDRETTPSYKLIAQATDGGGLFCRCDISLKVLDVNDNAPAFSSPHYLASVYE 3159

Query: 80   -AAPIGALVLTNTSLP 94
             AAP   L     S P
Sbjct: 3160 NAAPKALLTRLQASDP 3175



 Score = 38.5 bits (88), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYN--LSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T + LD E     +  L+V A +  G  + CSV V + D NDN P F  + Y   +
Sbjct: 2553 GVISTLEKLDRENALYKDMVLTVVALDGGGRASFCSVRVILADENDNAPRFRAVEYRMSI 2612

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  G+LV         I+A D D+ +N 
Sbjct: 2613 KANVAKGSLVTQ-------IQASDPDAGSNG 2636



 Score = 38.1 bits (87), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 10/93 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            A+    G + T   +D+E    Y+  V A+++   +++ S   V + + D NDN P F +
Sbjct: 2884 AIDSKTGWITTVSQMDHEECSSYSFEVVASDLGEVRSLSSTTAVTIAVSDVNDNPPRFER 2943

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              Y G V E+  +G +V        V++  D+D
Sbjct: 2944 ELYRGAVKESDSLGEVV-------AVLKTRDRD 2969



 Score = 35.4 bits (80), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
            LD E    Y L++TA++  G     +V+ V I+D NDN+P   Q  Y+    E  PI   
Sbjct: 3007 LDREQQDWYLLNITASD--GLYVAHTVVEVTIMDANDNSPICNQAVYSASFPEDMPINKG 3064

Query: 87   VLTNTSLPLVIRAEDKDSETNA 108
            +LT       + A D DS ++A
Sbjct: 3065 ILT-------VAATDADSGSSA 3079


>gi|354474447|ref|XP_003499442.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 2-like [Cricetulus
            griseus]
          Length = 4323

 Score = 80.9 bits (198), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +N AG  +     V+I+D NDN P F +  + G++SE
Sbjct: 1700 GLISTQKRLDHEKISSYQLKIRGSNTAGVFSEVVAFVYIIDENDNAPAFLKSTFVGHISE 1759

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP  +++L   + PLVIRA D D E N+LL
Sbjct: 1760 AAPPHSMILDEDNSPLVIRASDSDQEANSLL 1790



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G L   K LD+E T  Y+L + AT+           V V ++D NDN P F QLN
Sbjct: 3349 INPKKGKLQVAKALDWEQTPSYSLKLRATDSGQPPMHKDTEVAVEVVDVNDNPPRFFQLN 3408

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  V E +PIG     N  L L++  +D DS  N 
Sbjct: 3409 YSTAVQENSPIG-----NKVLQLIL--DDPDSPQNG 3437



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFT 69
            + P  G L  ++ LD+E    YNLS+ A++       + +C V V +LD N+N  +P+F+
Sbjct: 964  VEPMTGALSLERELDFERRAGYNLSLWASDSGRPLARRTLCHVEVLVLDVNENLHSPHFS 1023

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               Y G V E +P G  V       +V+ A+D+D   +  L
Sbjct: 1024 SFVYQGQVQENSPAGTQV-------MVVTAQDEDGGLDGEL 1057



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  VS
Sbjct: 2213 GVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 2272

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2273 EGLPAQTPVIQ-------LLASDQDSGKN 2294



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 8   FAILKPALHP----PY-GVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHI 58
           ++I+ P + P    PY GV+ T KP+DYE   RIY   V A++       +   SV + +
Sbjct: 495 YSIVSPKVVPFSIDPYLGVISTTKPMDYELMRRIYTFRVRASDWGSPFRQEKEVSVSLRL 554

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            + NDN P F ++N T  + + AP+G  ++  +++ +
Sbjct: 555 KNLNDNQPMFEEVNCTVSLRQDAPVGKSIMAVSAIDM 591



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KK LD E    Y L VTA++     +V  V V +LD NDN+P  +QL YTG V E    
Sbjct: 2946 SKKTLDREHIAKYLLRVTASDGKFQTSV-PVEVFVLDINDNSPQCSQLLYTGRVHEDVTP 3004

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D +TNA +
Sbjct: 3005 GHFILK-------VSAVDADMDTNAQI 3024



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + + + V A +           V+V++ D NDN P F +  Y   V
Sbjct: 2319 GEMFTIQELDYEAQQHFQVKVRAMDRGDPPLTGETLVVVNVSDINDNPPEFREPQYEANV 2378

Query: 78   SEAAPIGALVLTNTSL 93
            SE A  G LVL   +L
Sbjct: 2379 SELATCGHLVLKVQAL 2394



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFA+   +     G + T K LD E  +IY+  V A +      + S   V V I D N
Sbjct: 2824 ELFAVDNES-----GWITTLKELDCETQQIYHFYVVAFDHGQTIQLSSQALVEVSITDEN 2878

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
            DN P F   +Y G V E +  G LV T  +L   I  +++
Sbjct: 2879 DNPPRFASEDYRGSVVENSEPGELVATLKTLDADISEQNR 2918



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 26/54 (48%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E   IYNL   AT+  G      V +HI D NDN P F
Sbjct: 3038 LDPHTGELTTLTALDRERKDIYNLVAKATDGGGQSCQADVTLHIEDVNDNAPRF 3091



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            GVL  +K +D+E+T+ Y + + A      T++    ++ SV + + D NDN P F    Y
Sbjct: 2724 GVLKVRKAMDHESTKWYQIDLMAHCPHEDTDLV---SLVSVNIQVEDVNDNRPVFEADPY 2780

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +++E  P G  V+        + A D+D+ ++ 
Sbjct: 2781 KAFLTENMPGGTTVIQ-------VTANDQDTGSDG 2808



 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G++ T K +D+     Y L V  +      A  +VI+ I+D N++ P F + +Y 
Sbjct: 408 LNPRTGLITTMKLVDFHEQSQYQLHVKTSL---GLATTTVIIDIVDCNNHAPVFNRSSYE 464

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G + E  P G  VLT       + A D+D   N  +
Sbjct: 465 GTLDENIPPGTSVLT-------VTATDQDHGDNGCV 493



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L T  PLD E T  Y L+V A +       AV  V + + D NDN P  ++  +   V
Sbjct: 1077 GMLETLVPLDREFTPYYWLTVLAVDRGSVPLSAVTEVYIEVTDINDNIPCMSRPVFYPCV 1136

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P+G  VL        + A D DS +   L
Sbjct: 1137 QEDVPLGTSVLQ-------LEAWDPDSSSQGKL 1162



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIV 56
            ++ IL+P       + P  G L   + LDYE T ++  +V      T +  A     VI+
Sbjct: 1791 VYKILEPEALKFFKIDPSMGTLTITEELDYENTPLFQFNVYVHDQGTPLLFAPRPAKVII 1850

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSE 105
            H+ D ND +P F++  Y     E A +G    T+  + L+ ++A+D DSE
Sbjct: 1851 HVRDVNDFSPRFSEQIY-----EVAVVGP---THPGMKLLTVQAKDDDSE 1892



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT
Sbjct: 2509 PSGQITTLQKLDRENSTERVIAIKVMARDGGGKVAFCTVKIILTDENDNAPQFKASGYT 2567



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E T  Y LS+  +  + +    V +++V++ D N++ P FT   YT  V
Sbjct: 3249 GILYVNGSLDFETTPKYFLSIECSRKSSSSLSDVTTIVVNVTDVNEHHPRFTHDLYTVRV 3308

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E A +G  +LT       + A D+D   N
Sbjct: 3309 LENAVVGDTILT-------VSAFDEDGPIN 3331



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  GVL T + LD E    + L VT  +      K+   V+V ILD NDN P F+   
Sbjct: 1177 IHPFTGVLTTARQLDRENKDEHVLEVTVLDNGEPPLKSTSRVVVCILDVNDNPPMFSHKL 1236

Query: 73   YTGYVSE------AAPIGALVLTN 90
            +   + E      A P+ +LV ++
Sbjct: 1237 FNVRLPERLSPLSAGPVYSLVASD 1260



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEAT---RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  GVL+T   LD  +     I  + V    M   +    V +H+ D N + P+FTQL
Sbjct: 1489 LDPSSGVLVTVGRLDLHSQPSQHILVVMVRDQEMPIKRNFVWVTIHVEDGNLHPPHFTQL 1548

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y   V +    G  +L        +RA D D   NA
Sbjct: 1549 HYEANVPDTTAPGTELLQ-------VRAMDADRGANA 1578



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 29/65 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKP DY+A   Y+L V A +         V VH+  RN + P F    Y 
Sbjct: 2108 IDPYVGDISLKKPFDYQALNKYHLKVIARDAGTPPLQTEVEVHVTVRNKSNPLFQSPYYK 2167

Query: 75   GYVSE 79
              V E
Sbjct: 2168 VKVPE 2172



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L V A++ +   +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIVQASDKSLEFEALTRVVVHILDQNDLKPLFSPPSYRVTISEDVPL 163


>gi|363739133|ref|XP_414584.3| PREDICTED: protocadherin Fat 2 [Gallus gallus]
          Length = 4403

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L V  TNMAGA     V+++++D NDN P F +  + G++ E
Sbjct: 1717 GLISTQKNLDFEQVSFYQLKVRGTNMAGAFMDTMVLIYVIDENDNVPIFVKPAFIGWIVE 1776

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP  ++VL  ++ PLV  A D D ++NALL
Sbjct: 1777 NAPPQSMVLDESNSPLVTHATDADQDSNALL 1807



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A+ P  G +   K LD E    Y+L+V AT+       +  +V VH+ D NDN P F QL
Sbjct: 3379 AIQPKSGQISIAKHLDREEISSYSLTVRATDNGHPAQFSDVAVRVHVSDVNDNPPRFFQL 3438

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NY+  V E AP+G  VL      L++   D+DS  N 
Sbjct: 3439 NYSVVVQENAPVGTSVLE-----LIM--SDRDSPENG 3468



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +KKPLD E T  Y L V A++    +A   V + +LD NDN+P   Q+ YTG VSE A  
Sbjct: 2975 SKKPLDREDTEKYLLKVMASD-GKFQATTEVEIFVLDINDNSPECGQIFYTGRVSEDAQP 3033

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        I A D D  +NA +
Sbjct: 3034 GHFILK-------ISATDPDVGSNAQI 3053



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G++ T + +D+     + L V  TN   +    +V++ I+D N++ P F+Q +Y 
Sbjct: 411 INPHTGLITTVRAMDFHEQSNFQLEVATTN---SHTSATVVIDIIDCNNHAPSFSQSSYR 467

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G   E AP G  VLT       +RA D+D   N  +
Sbjct: 468 GAFDENAPPGTSVLT-------VRATDEDEGDNGFV 496



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + LDYE T+ + + V A +  G   + S   VIV++ D NDN P F+QL Y   
Sbjct: 2336 GQITTAQALDYEKTQQFRMKVRAADH-GTPPLSSDALVIVNVTDINDNPPEFSQLQYEAK 2394

Query: 77   VSEAAPIGALVLTNTSL 93
            VSE A  G +VL   +L
Sbjct: 2395 VSEMATCGHIVLKVQAL 2411



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL     LDYE    ++ +V AT+ A G+ +   V V + D NDN P F+++ YT  VS
Sbjct: 2230 GVLTVTGQLDYELQTKHSFTVRATDTALGSFSEARVEVEVEDINDNPPVFSEMIYTASVS 2289

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E+ P    V+        I A DKDS  N ++
Sbjct: 2290 ESMPAHTPVVQ-------IIASDKDSGRNKVV 2314



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L     LD+EA+  Y LS+  T    A    V  V+++I D ND+ P F Q  Y   +
Sbjct: 3280 GALYINGSLDFEASHEYYLSIEGTRKGSASLSDVTMVVINITDINDHAPEFIQDPYFADI 3339

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E A +G ++LT       + A+D D   N
Sbjct: 3340 REDAAVGEIILT-------VSADDLDGAMN 3362



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  +K LDYE    YNL+V   +        ++C + V++LD N+N   P F    + 
Sbjct: 981  GALRLEKELDYEKKDSYNLTVQVRDSGKPVSRSSLCHLEVNVLDVNENLYPPRFASFVFK 1040

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGST 114
            G+V E +P G  V+  T+  +    + KD E    L   T
Sbjct: 1041 GWVQENSPEGTSVMMVTAKDI---DKGKDGEVQYFLREGT 1077



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLD+E T  Y L++T  ++   +     +  V++LD NDNTP F Q  Y   +
Sbjct: 772 GLLQILSPLDHERTSFYILNITVYDLGTPQKSSWKLLAVNVLDTNDNTPRFPQGAYWVAI 831

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E       V+T T++   ++AED D++ N 
Sbjct: 832 PEN------VVTGTTIAQ-LKAEDADTDDNG 855



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD E    Y   V AT+      + S   V V + D NDN P FT   Y G 
Sbjct: 2862 GWITTLKELDCETQETYRFYVVATDHGRKVQLSSQTLVEVTVSDENDNAPQFTSDFYKGS 2921

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDK 102
            V E A  G +++T +++   I  +++
Sbjct: 2922 VIENAEPGQVIVTLSTIDADISEQNR 2947



 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L  KK +D+E T+ Y + V A        + S++   + + D NDN P F    Y  +
Sbjct: 2754 GALKIKKAVDHETTKWYQIDVMAHCSHQETELVSLVSVNIQVQDINDNKPVFEADPYKAF 2813

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P G  V+        + A D+D+ ++ 
Sbjct: 2814 VMENMPSGTTVIQ-------VTANDQDTGSDG 2838



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E    Y+L   AT+  G      + + I D NDN P F      
Sbjct: 3067 LGPHTGELTTSAPLDREQKPTYHLVAKATDGGGRSCQADITLTIEDTNDNAPRF------ 3120

Query: 75   GYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
             + S  A +     T T  P+ V+ A D D   NA
Sbjct: 3121 -FPSHCA-VAVFDNTTTKTPIAVVSARDLDEGLNA 3153



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 20/124 (16%)

Query: 2    SHPVQLFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
            S+ + ++ IL+P       + P  G L ++  +DYE T +++ SV A +       A   
Sbjct: 1803 SNALLVYEILEPEALKYFTVDPSTGTLTSRADIDYELTPVFHFSVHARDSGNPSLFASKP 1862

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSE-TNAL 109
              V +H+ D ND+ P F +  Y         +  L+  +  + L+ ++A+D DSE T ++
Sbjct: 1863 AKVTIHVKDMNDSPPVFAKDTYE--------LSVLLPVHPGMELLSVQAKDADSEVTYSI 1914

Query: 110  LDGS 113
            ++G+
Sbjct: 1915 VEGN 1918



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 28  LDYEATRIYNLSVTAT-NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           L+ E    Y L + AT N    +A   V++HILDRND  P F+  +Y   + E  P+  +
Sbjct: 110 LNREVKDSYMLIIKATENTFAYEAWAKVLIHILDRNDLKPLFSPPSYKVSIREDTPLKTV 169

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
           V T       + A D D+  NA
Sbjct: 170 VST-------LSATDADAGQNA 184



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT--- 74
            G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT   
Sbjct: 2542 GHITTLQKLDRENSTERVIAIKVMAKDGGGKVAFCTVKIILTDENDNPPQFKASEYTLSI 2601

Query: 75   -GYVSEAAPI 83
               VS+ +P+
Sbjct: 2602 QSNVSKGSPV 2611



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 13  PALHPPY-GVLLTKKPLDYE-ATRIYNLSVTATNMAGA-KAVCSVIVHIL--DRNDNTPY 67
           P +  PY G++ T K LDYE   R Y+L V A++     +    V V ++  + NDN P 
Sbjct: 507 PFVIDPYSGIISTSKSLDYELMQRWYHLRVWASDWGSPFRHETEVYVSLMLSNVNDNAPV 566

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSL 93
           F + + +G +    P+G  V T +++
Sbjct: 567 FEKASCSGSIPRDFPVGNPVATVSAI 592



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E T  Y L+V A ++      +   + + + D NDN P  ++  Y   V
Sbjct: 1089 GTIRTIGPLDREGTSHYWLTVLALDLGTVPLSSATEIYIEVTDTNDNPPQMSRPVYYASV 1148

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E +P       NTS+ L + A D DS +   L
Sbjct: 1149 MENSP------PNTSV-LQLDALDPDSSSEGKL 1174



 Score = 34.7 bits (78), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 30/68 (44%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +  KKPLDY A   Y+L V A +      +    V I  RN + P F  L Y 
Sbjct: 2125 IDPYLGDISLKKPLDYHALNKYSLRVIAKDNGEPPLLAEEEVVISVRNKSNPLFQSLYYR 2184

Query: 75   GYVSEAAP 82
              V E  P
Sbjct: 2185 VKVPENIP 2192


>gi|195177835|ref|XP_002028952.1| GL16044 [Drosophila persimilis]
 gi|194108903|gb|EDW30946.1| GL16044 [Drosophila persimilis]
          Length = 393

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV++    +DYE  +++NL++  TNMA   A  ++I+HILD NDN P+F Q  Y 
Sbjct: 237 INPSTGVIVINNNIDYEINKVFNLTIKGTNMAAESACQNIIIHILDANDNVPHFLQTEYV 296

Query: 75  GYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLDGSTN 115
           G +SE+A IG+ VL    + +  L ++  D D   N + +   N
Sbjct: 297 GVLSESADIGSYVLKLHDSANHHLTLQVADADVGINGMFEYHIN 340



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 37  GNVIVAQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 96

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+A IG+ +         +RA D+DS  NA
Sbjct: 97  PESAAIGSKLAE-------VRAIDRDSGHNA 120


>gi|194748040|ref|XP_001956457.1| GF24582 [Drosophila ananassae]
 gi|190623739|gb|EDV39263.1| GF24582 [Drosophila ananassae]
          Length = 1581

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV++    +DYE  +++NL+V  TNMA   +  ++++HILD NDN PYF Q  Y 
Sbjct: 901 INPSTGVIVINGNIDYELIKVFNLTVKGTNMAAESSCQNIVIHILDANDNIPYFIQNEYV 960

Query: 75  GYVSEAAPIGALVLT--NTSLPLVIRAEDKDSETNALLD 111
           G +SE+A IG+ VL    +   L ++ +D D   N +++
Sbjct: 961 GALSESAEIGSYVLKVHESKDHLTLQVKDADVGVNGMVE 999



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L  K LDYE  + YNL+++ T+     +  ++++ ++D NDNTP F +  Y   +SE
Sbjct: 598 GNILLSKHLDYETEKSYNLTISVTD-GTFTSFTNLLIQVIDINDNTPKFAKDVYHVNISE 656

Query: 80  AAPIGALVLTNTSLPLVIRAEDK 102
                ++++    L    R EDK
Sbjct: 657 NIEEESVIM---QLHATDRDEDK 676



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
           +LF I K       G + T+  LDYE  +++NL V+A +  G  ++ S   +++ I+D N
Sbjct: 166 ELFKIDKHT-----GAIRTQGFLDYENKQVHNLIVSAID-GGDPSLTSDMPIVIMIIDVN 219

Query: 63  DN--TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           +N   P F    Y G + E  P G  V+  T+  L
Sbjct: 220 ENRFAPEFEDFVYEGRIKENKPKGTFVMNVTARDL 254



 Score = 41.6 bits (96), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G +   KPLD E    Y+L +TA +          +V++L  D NDN P F    YT  V
Sbjct: 69  GCIRLNKPLDREKQDKYDLHITAKDGGNPALSSEALVYVLVDDVNDNAPVFGVQEYTFKV 128

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G ++        VI A D+D   NA
Sbjct: 129 REDLPKGTVL-------AVIEAVDEDIGPNA 152



 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 701 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 760

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+A IG+ +         +RA D+DS  NA
Sbjct: 761 PESAAIGSKLAE-------VRAIDRDSGHNA 784



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 20/114 (17%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTAT-------NMAGAKAVCSV 54
            +P  LF I +        GV+      D E   +Y L V A        N    +A  SV
Sbjct: 1210 NPTDLFEIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSELCDGLNANVRRAFTSV 1264

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 1265 YISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAVDLDSAENG 1311


>gi|198477246|ref|XP_002136689.1| GA23242 [Drosophila pseudoobscura pseudoobscura]
 gi|198142988|gb|EDY71700.1| GA23242 [Drosophila pseudoobscura pseudoobscura]
          Length = 1980

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 3/100 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++    +DYE  +++NL++  TNMA   A  ++I+HILD NDN P+F Q  Y 
Sbjct: 1753 INPSTGVIVINNNIDYEINKVFNLTIKGTNMAAESACQNIIIHILDANDNVPHFLQTEYV 1812

Query: 75   GYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
            G +SE+A IG+ VL    + +  L ++  D D   N + +
Sbjct: 1813 GVLSESAEIGSYVLKLHDSANHHLTLQVADADVGINGMFE 1852



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
           ++P  G+L T K LD E    Y L+V+A + A  G++   S  V +++ D NDN P F +
Sbjct: 441 INPDSGMLYTAKQLDAEKKTFYTLTVSAIDQANIGSRTQSSAKVKINVQDMNDNDPIFEE 500

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N    ++E    G+ V   T       A+DKDS  N+ +
Sbjct: 501 MNRIISINENNLAGSFVAKLT-------AKDKDSGENSYI 533



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LDYE    YNL+++ T+        S+++ ++D NDNTP F +  Y   +SE
Sbjct: 1450 GNILLAKYLDYETETSYNLNISVTDGTFV-TYTSIMIQVIDTNDNTPQFAKDVYHVNISE 1508

Query: 80   AAPIGALVLTNTSLPLVIRAEDK 102
                 ++++    L    R EDK
Sbjct: 1509 NIEEESVIM---QLHATDRDEDK 1528



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LF I K       G + T+  LDYE  ++++L+V+A +  G  ++ S   +++ I+D N
Sbjct: 1018 KLFKIDKHT-----GAIRTQGYLDYENRQVHHLTVSAID-GGFPSLTSDMPILIEIIDVN 1071

Query: 63   DN--TPYFTQLNYTGYVSEAAPIGALVLTNTS 92
            +N   P F    Y G + E +P G  VL  T+
Sbjct: 1072 ENRFAPEFDDFVYEGKIKENSPKGTFVLNITA 1103



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G +L   PLD E    Y L +TA +          +V+I+  D NDN P F    Y   V
Sbjct: 921  GCILLNTPLDREKQDNYALHITAKDGGNPVLSSEALVYIVVDDVNDNAPVFGVQEYIFKV 980

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  P G +V        VI A DKD   NA
Sbjct: 981  REDLPRGTVV-------AVIEAIDKDIGPNA 1004



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T   +D+E   R Y L + A++       +    + + + D NDN P F ++N  G
Sbjct: 552 GVVRTTSLIDFETMKRNYELIIRASDWGLPYRRQTEIKLSIVVKDINDNRPQFERVNCFG 611

Query: 76  YVSEAAPIGALVL 88
            VS++APIG  + 
Sbjct: 612 KVSKSAPIGTEIF 624



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 1553 GNVIVAQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 1612

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+A IG+ +         +RA D+DS  NA
Sbjct: 1613 PESAAIGSKLAE-------VRAIDRDSGHNA 1636


>gi|348520328|ref|XP_003447680.1| PREDICTED: protocadherin Fat 2-like [Oreochromis niloticus]
          Length = 4457

 Score = 79.0 bits (193), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 57/91 (62%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+  L+YE    Y L VTA+  AGA +   V ++++D NDN P F Q  Y G + E
Sbjct: 1700 GLISTQGRLNYETCDSYKLRVTASTTAGAVSRTVVHIYVVDENDNAPVFEQREYQGQIGE 1759

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +A I ++V+   + PLVIRA D D ++N+LL
Sbjct: 1760 SAHINSMVMGERNTPLVIRASDSDRDSNSLL 1790



 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T    DYE    Y   V A +    +A   ++V I D NDN+P FTQ +Y 
Sbjct: 408 INPKTGIIITTGKFDYERKDRYEFDVMANH---GEAETHIVVEITDENDNSPQFTQTSYQ 464

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E +P+G+ VL        + A DKD   N  +
Sbjct: 465 ATLDENSPVGSSVLK-------VAASDKDKGKNGFV 493



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
            P+  FAI++      +G L+ K+ LD EA   Y L VTAT+    +A  SV VH+LD ND
Sbjct: 2947 PLGQFAIVQ-VDEGQWG-LIVKESLDREARDRYALRVTATD-GKFEAPISVDVHVLDIND 3003

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            N+P   QL YT  V E +P    VL        + A D D  TN  +
Sbjct: 3004 NSPLCEQLVYTEVVMENSPSSVFVLK-------VSASDPDVGTNGQI 3043



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+  ++ L+V AT+ + GA +  S+ + + D NDN P F+ L +   ++
Sbjct: 2213 GVLTVTNPLDYESQTMHVLTVRATDSVTGAFSEASIEIEVEDVNDNAPVFSNLMHNVNIA 2272

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P+   V+        + A DKDS  N  L
Sbjct: 2273 EGLPVDTSVIE-------LSASDKDSGRNKDL 2297



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            +L    G LL +K +D+E T+ Y + V A    N     ++ SV + + D NDN P F  
Sbjct: 2733 SLDQESGTLLLQKSIDHEKTKWYQIDVIAQGNHNGTDVASLVSVSIQVQDVNDNQPVFDA 2792

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y  +++E  P G  V+        + A D D++TN ++
Sbjct: 2793 SPYRAFLAENMPAGTTVIQ-------VTANDPDTDTNGVV 2825



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            L P  GVL+  + LDYE   I+ L+V   +      +    V+VH+ D ND++P F    
Sbjct: 1490 LDPKSGVLVMTEELDYEKIAIHTLTVMVRDQGIPVKRNFAKVVVHVEDCNDHSPAFLSPR 1549

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   VS  AP G  VL        ++A DKD  +NA
Sbjct: 1550 YEVGVSNLAPAGTEVLR-------VKALDKDMGSNA 1578



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-VCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G++    PLD+E +R Y LSV  +      + + +VI+++ D NDN P F + +Y+  VS
Sbjct: 3270 GLVTLVAPLDFEVSREYYLSVEGSRGKSPLSDITTVIINVTDVNDNPPVFGRSDYSAEVS 3329

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E    G LV+        + A D+D   N LL
Sbjct: 3330 EDLTPGRLVMK-------VTATDEDGPVNNLL 3354



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            G + T +  D E TR+Y  +V AT+  G AK   SV+V ++  D NDN P FT+  Y G 
Sbjct: 2851 GWITTLRETDCEVTRVYRFNVVATDHGGNAKLSSSVLVEVMVTDENDNPPKFTEEVYRGS 2910

Query: 77   VSEAA----PIGALVLTNTSLPLVIR 98
            V E +    PI  +  T+  + L  R
Sbjct: 2911 VVENSTPYEPIVYMTTTDADVSLENR 2936



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            ++P  G+++TK+ LDYE+ + +NL + AT+  G   + S   V +++ D NDN P F   
Sbjct: 2314 INPQTGLIVTKQVLDYESRKHFNLKIKATD-NGTIPLSSETFVTINVTDVNDNPPDFDSS 2372

Query: 72   NYTGYVSEAAPIGALVL 88
             Y   + E A  G +V+
Sbjct: 2373 RYKATLDEMAKCGHIVI 2389



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
            + FAI K       G+++T +PLD E  + R+  + V A +  G  A C+V + + D ND
Sbjct: 2519 EKFAISKD------GLIVTTQPLDRENPSQRVIAIKVMAKDGGGKVAFCTVKIILTDEND 2572

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P F    Y   +      G+ V+        I A D D   NA
Sbjct: 2573 NVPQFKASEYQVSIQSTVNKGSPVIQ-------IMAYDADDGKNA 2610



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDN--TPYFTQLNYT 74
            G L  ++ LD+E    YNL+V A +    +++   C V + +LD N+N   P F++  Y 
Sbjct: 972  GALTLERELDFERWPSYNLTVWAVDHGLPRSLSSSCFVEIEVLDVNENLHRPVFSEFVYE 1031

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              V E + +G  V+T T       A DKD
Sbjct: 1032 ALVKEDSAVGTSVVTLT-------ASDKD 1053



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 7    LFAILKPA----LHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAG--AKAVCSVIVHIL 59
            L+++L PA    + P  G+L T   P D E   +Y++ V   ++      A+  V V I 
Sbjct: 1992 LYSVLNPAGRFTISPTAGLLETTGVPFDREEQDVYDIVVKVQDIRTPPRTAITKVKVFID 2051

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            D NDN+P F  L ++  +SE A  G ++   T++
Sbjct: 2052 DVNDNSPQFLNLPFSMMISEDAEPGDVLYQVTAI 2085



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 27  PLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           PLD E+   Y L++T  ++      A   + ++++D NDN P F Q  Y  +V E   + 
Sbjct: 770 PLDRESKEFYILNITVYDLGIPQTSAWKFIAINVMDVNDNPPVFDQPRYVIHVPENKEVN 829

Query: 85  ALVLTNTSLPLVIRAEDKDSETNA 108
           +++ T        RA D DS+ + 
Sbjct: 830 SVIFT-------CRAADLDSDMSG 846



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLN 72
            + P  G +   KPLD +   +++L+V AT+    +   +CSV VH+       P F    
Sbjct: 1595 IDPDLGSISVSKPLDLQPQDLFHLTVKATDQGFPQRSDLCSVHVHVRVSEQTPPTFPSDE 1654

Query: 73   YTGYVSEAAPIGALVLT 89
            Y   +SE + +G  V+T
Sbjct: 1655 YLTEISELSAVGTPVVT 1671



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+L  ++PL+ E    + L V AT+    +   +V +V V ++  +D  P F    YT  
Sbjct: 3164 GILRLERPLNPETPTTFELKVKATDRGLPRHLHSVATVTVDVVSLDDYQPVFLSSEYTAQ 3223

Query: 77   VSEAAPIGALVLTNTSL--------PLVIRAEDKDSETNALLDGST 114
            + E++ +G+ VL+ ++L        P+V R    + +    LD  T
Sbjct: 3224 LPESSAVGSEVLSVSALTRDSSSPDPIVYRIISGNEDGRFQLDSQT 3269



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 27/54 (50%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G L T   LD E    +NL V AT+  G      +++ + D NDN P F+  +Y
Sbjct: 3062 GELFTLAVLDRERNVEFNLVVKATDGGGRSCQADILLMVQDMNDNPPRFSSSHY 3115



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G +  +  LD E    Y+L+V A +        +V+V +   D NDN P F+Q+N++  +
Sbjct: 3374 GDITVRTALDREEIPHYSLTVQAADEGSPPLSSAVLVAVTVTDVNDNPPVFSQVNHSLLL 3433

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   +G+ +L      LV+   DKD+  N 
Sbjct: 3434 QEGEAVGSSILQ-----LVVM--DKDTPRNG 3457


>gi|442633558|ref|NP_001027138.2| kugelei, isoform D [Drosophila melanogaster]
 gi|440216049|gb|AAZ66056.2| kugelei, isoform D [Drosophila melanogaster]
          Length = 4699

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++    +DYE+ +++NL+V  TNMA   +  ++I+HILD NDN PYF Q  Y 
Sbjct: 1762 INPSTGVIVINGNIDYESIKVFNLTVKGTNMAAESSCQNIIIHILDANDNIPYFVQNEYV 1821

Query: 75   GYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
            G + E+A IG+ VL    ++   L ++ +D D   N +++
Sbjct: 1822 GALPESAAIGSYVLKVHDSSKDHLTLQVKDADVGVNGMVE 1861



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
           ++P  G+L T K LD E    Y L+V+A + A  G++   S  V + + D NDN P F  
Sbjct: 450 INPDSGMLYTAKQLDAEKKSSYTLTVSAIDQANVGSRKQSSAKVKISVQDMNDNDPIFEN 509

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N    ++E    G+ V+        + A+D+DS  N+ +
Sbjct: 510 VNKVISINENNLAGSFVVK-------LTAKDRDSGENSYI 542



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLD E    Y L + A +    +   SV   ++ILD NDN P F+  
Sbjct: 3427 SIDPKNGTISVSRPLDRETISHYTLEIQACDQGDPQRCNSVPININILDTNDNAPIFSSS 3486

Query: 72   NYTGYVSEAAPIGALVLT 89
            NY+  + E   +G + LT
Sbjct: 3487 NYSVVLQENRLLGYVFLT 3504



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L+    LDYE ++ Y L++ A +  G   + +   V + ILD NDN+P F Q  Y   
Sbjct: 3328 GDLVLNATLDYEMSKFYFLTIQAID-GGTPPLSNNAYVNISILDINDNSPTFLQNLYRIN 3386

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V+E   +G+ +L        ++A D+DS+ N L+
Sbjct: 3387 VNEDIFVGSKILD-------VKATDEDSDVNGLV 3413



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   KPLD E    YNLS+ AT+     A  +V + + D NDNTPY  +  Y    +E
Sbjct: 3020 GELFIAKPLDREQLMFYNLSIIATD-GKFTAKANVEIDVKDINDNTPYCLKPRYHISTNE 3078

Query: 80   AAPIG 84
            +  IG
Sbjct: 3079 SISIG 3083



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   ++NL+V A +    K  ++ +V V+ILD NDN P F+   Y+  +
Sbjct: 3223 GIIRLHKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPEFSMRQYSCKI 3282

Query: 78   SEAAPIGALV 87
             E A  G  V
Sbjct: 3283 LENATHGTEV 3292



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRND 63
            +LF I K       G + T+  LDYE  +++NL V+A +          S+++ I+D N+
Sbjct: 1027 ELFRIDKHT-----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNE 1081

Query: 64   N--TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            N   P F    Y G V E  P G  V+  T+  +
Sbjct: 1082 NRFAPEFDDFVYEGKVKENKPKGTFVMNVTARDM 1115



 Score = 40.8 bits (94), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LDYE  + YNL+++ T+     A  +++V ++D NDN P F +  Y   +SE
Sbjct: 1459 GNILLSKYLDYETQQSYNLTISVTD-GTFTAFTNLLVQVIDINDNPPQFAKDVYHVNISE 1517

Query: 80   AAPIGALVLTNTSLPLVIRAEDK 102
                 ++++    L    R EDK
Sbjct: 1518 NIEEESVIM---QLHATDRDEDK 1537



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  K PLDYE  + +++ V   +  G+ ++ S   V + + D NDN P F + +Y   
Sbjct: 2399 GNLYLKTPLDYEQIKYHHIVVNVKDH-GSPSLSSRSNVFITVKDLNDNAPCFVEPSYFTK 2457

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
            VS AA  G  V    +LP   +A DKD S+T++L
Sbjct: 2458 VSVAAVRGQFV----ALP---KAYDKDISDTDSL 2484



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 20/114 (17%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSV 54
            +P QLF I +        GV+      D E   +Y L V A +M          +AV S+
Sbjct: 2072 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSMLYDGMNSNVRRAVTSI 2126

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 2127 DISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAIDLDSAENG 2173



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L   KPLD E    Y L +TA +          +V++L  D NDN P F    Y   V
Sbjct: 930  GCLRLNKPLDREKQDNYALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKV 989

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             E  P G ++        VI A D+D   NA +  S
Sbjct: 990  REDLPRGTVL-------AVIEAVDEDIGPNAEIQFS 1018



 Score = 37.7 bits (86), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 1562 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 1621

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+A IG+ +         +RA D+DS  NA
Sbjct: 1622 PESAAIGSKLAE-------VRAIDRDSGHNA 1645



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T   LD+E   R Y L + A++       +    + + + D NDN P F ++N  G
Sbjct: 561 GIVKTTSLLDFETMKRNYELIIRASDWGLPYRRQTEIKLSIVVKDINDNRPQFERVNCYG 620

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            V+++AP+G  V   +++  
Sbjct: 621 KVTKSAPMGTEVFVTSAIDF 640


>gi|442633556|ref|NP_649171.3| kugelei, isoform C [Drosophila melanogaster]
 gi|440216048|gb|AAF49078.3| kugelei, isoform C [Drosophila melanogaster]
          Length = 4689

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++    +DYE+ +++NL+V  TNMA   +  ++I+HILD NDN PYF Q  Y 
Sbjct: 1762 INPSTGVIVINGNIDYESIKVFNLTVKGTNMAAESSCQNIIIHILDANDNIPYFVQNEYV 1821

Query: 75   GYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
            G + E+A IG+ VL    ++   L ++ +D D   N +++
Sbjct: 1822 GALPESAAIGSYVLKVHDSSKDHLTLQVKDADVGVNGMVE 1861



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
           ++P  G+L T K LD E    Y L+V+A + A  G++   S  V + + D NDN P F  
Sbjct: 450 INPDSGMLYTAKQLDAEKKSSYTLTVSAIDQANVGSRKQSSAKVKISVQDMNDNDPIFEN 509

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N    ++E    G+ V+        + A+D+DS  N+ +
Sbjct: 510 VNKVISINENNLAGSFVVK-------LTAKDRDSGENSYI 542



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLD E    Y L + A +    +   SV   ++ILD NDN P F+  
Sbjct: 3427 SIDPKNGTISVSRPLDRETISHYTLEIQACDQGDPQRCNSVPININILDTNDNAPIFSSS 3486

Query: 72   NYTGYVSEAAPIGALVLT 89
            NY+  + E   +G + LT
Sbjct: 3487 NYSVVLQENRLLGYVFLT 3504



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L+    LDYE ++ Y L++ A +  G   + +   V + ILD NDN+P F Q  Y   
Sbjct: 3328 GDLVLNATLDYEMSKFYFLTIQAID-GGTPPLSNNAYVNISILDINDNSPTFLQNLYRIN 3386

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V+E   +G+ +L        ++A D+DS+ N L+
Sbjct: 3387 VNEDIFVGSKILD-------VKATDEDSDVNGLV 3413



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   KPLD E    YNLS+ AT+     A  +V + + D NDNTPY  +  Y    +E
Sbjct: 3020 GELFIAKPLDREQLMFYNLSIIATD-GKFTAKANVEIDVKDINDNTPYCLKPRYHISTNE 3078

Query: 80   AAPIG 84
            +  IG
Sbjct: 3079 SISIG 3083



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   ++NL+V A +    K  ++ +V V+ILD NDN P F+   Y+  +
Sbjct: 3223 GIIRLHKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPEFSMRQYSCKI 3282

Query: 78   SEAAPIGALV 87
             E A  G  V
Sbjct: 3283 LENATHGTEV 3292



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRND 63
            +LF I K       G + T+  LDYE  +++NL V+A +          S+++ I+D N+
Sbjct: 1027 ELFRIDKHT-----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNE 1081

Query: 64   N--TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            N   P F    Y G V E  P G  V+  T+  +
Sbjct: 1082 NRFAPEFDDFVYEGKVKENKPKGTFVMNVTARDM 1115



 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LDYE  + YNL+++ T+     A  +++V ++D NDN P F +  Y   +SE
Sbjct: 1459 GNILLSKYLDYETQQSYNLTISVTD-GTFTAFTNLLVQVIDINDNPPQFAKDVYHVNISE 1517

Query: 80   AAPIGALVLTNTSLPLVIRAEDK 102
                 ++++    L    R EDK
Sbjct: 1518 NIEEESVIM---QLHATDRDEDK 1537



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L  K PLDYE  + +++ V   +  G+ ++ S   V + + D NDN P F + +Y   
Sbjct: 2399 GNLYLKTPLDYEQIKYHHIVVNVKDH-GSPSLSSRSNVFITVKDLNDNAPCFVEPSYFTK 2457

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
            VS AA  G  V    +LP   +A DKD S+T++L
Sbjct: 2458 VSVAAVRGQFV----ALP---KAYDKDISDTDSL 2484



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 20/114 (17%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSV 54
            +P QLF I +        GV+      D E   +Y L V A +M          +AV S+
Sbjct: 2072 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSMLYDGMNSNVRRAVTSI 2126

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 2127 DISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAIDLDSAENG 2173



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L   KPLD E    Y L +TA +          +V++L  D NDN P F    Y   V
Sbjct: 930  GCLRLNKPLDREKQDNYALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKV 989

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             E  P G ++        VI A D+D   NA +  S
Sbjct: 990  REDLPRGTVL-------AVIEAVDEDIGPNAEIQFS 1018



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 1562 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 1621

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+A IG+ +         +RA D+DS  NA
Sbjct: 1622 PESAAIGSKLAE-------VRAIDRDSGHNA 1645



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T   LD+E   R Y L + A++       +    + + + D NDN P F ++N  G
Sbjct: 561 GIVKTTSLLDFETMKRNYELIIRASDWGLPYRRQTEIKLSIVVKDINDNRPQFERVNCYG 620

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            V+++AP+G  V   +++  
Sbjct: 621 KVTKSAPMGTEVFVTSAIDF 640


>gi|25090328|sp|Q9VW71.2|FAT2_DROME RecName: Full=Fat-like cadherin-related tumor suppressor homolog;
            AltName: Full=Protein kugelei; Flags: Precursor
          Length = 4705

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 3/100 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++    +DYE+ +++NL+V  TNMA   +  ++I+HILD NDN PYF Q  Y 
Sbjct: 1759 INPSTGVIVINGNIDYESIKVFNLTVKGTNMAAESSCQNIIIHILDANDNIPYFVQNEYV 1818

Query: 75   GYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
            G + E+A IG+ VL    ++   L ++ +D D   N +++
Sbjct: 1819 GALPESAAIGSYVLKVHDSSKDHLTLQVKDADVGVNGMVE 1858



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
           ++P  G+L T K LD E    Y L+V+A + A  G++   S  V + + D NDN P F  
Sbjct: 447 INPDSGMLYTAKQLDAEKKSSYTLTVSAIDQANVGSRKQSSAKVKISVQDMNDNDPIFEN 506

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N    ++E    G+ V+        + A+D+DS  N+ +
Sbjct: 507 VNKVISINENNLAGSFVVK-------LTAKDRDSGENSYI 539



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
            ++ P  G +   +PLD E    Y L + A +    +   SV   ++ILD NDN P F+  
Sbjct: 3443 SIDPKNGTISVSRPLDRETISHYTLEIQACDQGDPQRCNSVPININILDTNDNAPIFSSS 3502

Query: 72   NYTGYVSEAAPIGALVLT 89
            NY+  + E   +G + LT
Sbjct: 3503 NYSVVLQENRLLGYVFLT 3520



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L+    LDYE ++ Y L++ A +  G   + +   V + ILD NDN+P F Q  Y   
Sbjct: 3344 GDLVLNATLDYEMSKFYFLTIQAID-GGTPPLSNNAYVNISILDINDNSPTFLQNLYRIN 3402

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V+E   +G+ +L        ++A D+DS+ N L+
Sbjct: 3403 VNEDIFVGSKILD-------VKATDEDSDVNGLV 3429



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   KPLD E    YNLS+ AT+     A  +V + + D NDNTPY  +  Y    +E
Sbjct: 3036 GELFIAKPLDREQLMFYNLSIIATD-GKFTAKANVEIDVKDINDNTPYCLKPRYHISTNE 3094

Query: 80   AAPIG 84
            +  IG
Sbjct: 3095 SISIG 3099



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   ++NL+V A +    K  ++ +V V+ILD NDN P F+   Y+  +
Sbjct: 3239 GIIRLHKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPEFSMRQYSCKI 3298

Query: 78   SEAAPIGALV 87
             E A  G  V
Sbjct: 3299 LENATHGTEV 3308



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRND 63
            +LF I K       G + T+  LDYE  +++NL V+A +          S+++ I+D N+
Sbjct: 1024 ELFRIDKHT-----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNE 1078

Query: 64   N--TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            N   P F    Y G V E  P G  V+  T+  +
Sbjct: 1079 NRFAPEFDDFVYEGKVKENKPKGTFVMNVTARDM 1112



 Score = 40.8 bits (94), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LDYE  + YNL+++ T+     A  +++V ++D NDN P F +  Y   +SE
Sbjct: 1456 GNILLSKYLDYETQQSYNLTISVTD-GTFTAFTNLLVQVIDINDNPPQFAKDVYHVNISE 1514

Query: 80   AAPIGALVLTNTSLPLVIRAEDK 102
                 ++++    L    R EDK
Sbjct: 1515 NIEEESVIM---QLHATDRDEDK 1534



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 20/114 (17%)

Query: 3    HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSV 54
            +P QLF I +        GV+      D E   +Y L V A +M          +AV S+
Sbjct: 2069 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSMLYDGMNSNVRRAVTSI 2123

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 2124 DISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAIDLDSAENG 2170



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L   KPLD E    Y L +TA +          +V++L  D NDN P F    Y   V
Sbjct: 927  GCLRLNKPLDREKQDNYALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKV 986

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             E  P G ++        VI A D+D   NA +  S
Sbjct: 987  REDLPRGTVL-------AVIEAVDEDIGPNAEIQFS 1015



 Score = 37.7 bits (86), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 1559 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 1618

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+A IG+ +         +RA D+DS  NA
Sbjct: 1619 PESAAIGSKLAE-------VRAIDRDSGHNA 1642



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T   LD+E   R Y L + A++       +    + + + D NDN P F ++N  G
Sbjct: 558 GIVKTTSLLDFETMKRNYELIIRASDWGLPYRRQTEIKLSIVVKDINDNRPQFERVNCYG 617

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            V+++AP+G  V   +++  
Sbjct: 618 KVTKSAPMGTEVFVTSAIDF 637



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 29/112 (25%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG------------AKAVCSVIVHIL-------- 59
            G L  K PLDYE  + +++ V   +                + +C  I + L        
Sbjct: 2396 GNLYLKTPLDYEQIKYHHIVVNVKDHGSPSLSSRSNVFITGRILCRFISYKLIYDSIIPV 2455

Query: 60   -DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
             D NDN P F + +Y   VS AA  G  V    +LP   +A DKD S+T++L
Sbjct: 2456 KDLNDNAPCFVEPSYFTKVSVAAVRGQFV----ALP---KAYDKDISDTDSL 2500


>gi|432880945|ref|XP_004073728.1| PREDICTED: protocadherin Fat 2-like [Oryzias latipes]
          Length = 4001

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 59/96 (61%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  G++  +K LD+E    Y L V A+  AGA +   V ++++D NDN P F Q  Y 
Sbjct: 1829 LNPYTGLISIQKHLDFEDHESYRLEVAASTTAGALSKTFVSIYVIDENDNAPRFQQSEYQ 1888

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G++SE+A + ++V+  ++ PLV+ A D D   N+LL
Sbjct: 1889 GHISESAHVNSMVMGQSNAPLVVHASDADRGFNSLL 1924



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 10/100 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            +L    G LL +KP+D+E T+ Y + V A    N     ++ SV + + D NDN P F  
Sbjct: 2865 SLDKESGTLLLQKPIDHERTKWYQIDVIAQGNHNGTDVASLVSVSIQVQDVNDNQPVFDA 2924

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y  +++E  P G  V+        + A D D++TN L+
Sbjct: 2925 SPYRAFLTENMPAGTTVIQ-------VTANDPDTDTNGLV 2957



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            L P  GVL+  +PLD+E T ++ L V   +      +    V++H+ D ND++P F    
Sbjct: 1624 LDPKSGVLVMTEPLDFERTAVHTLVVMVRDQEIPMKRNFAKVVIHVEDCNDHSPAFLSPR 1683

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   +S  AP G+ V+        ++A DKD+ +NA
Sbjct: 1684 YEASISNQAPTGSEVIR-------VKALDKDTGSNA 1712



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T    DYE    Y   V A +    +A   ++V I D NDN+P FTQ +Y 
Sbjct: 542 INPKTGIIVTAAKFDYEKKDRYEFDVVANH---GEAETHLVVEITDENDNSPLFTQTSYQ 598

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E  P+G+ V+        + A D D   N  +
Sbjct: 599 ATLDENTPVGSSVVK-------VTAWDSDKGKNGFV 627



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   + L+V AT+ + G+ +  ++ V + D NDN P F+ L Y   ++
Sbjct: 2347 GVLTVTNPLDYESQTAHTLTVRATDAVTGSFSEATIEVEVEDVNDNAPVFSPLTYAANIA 2406

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P+      NTS+  V  A DKDS  N  L
Sbjct: 2407 ERLPV------NTSVTRV-SASDKDSGRNKDL 2431



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G+L    PLD+E +R Y LSV  +      K + ++I+++ D NDN P F Q + +  +S
Sbjct: 3402 GLLTLMAPLDFEVSREYFLSVEGSRGKSPLKDITTIIINVTDVNDNAPVFRQSDRSVDIS 3461

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSET 106
            E    G+LV+   S+  V+     D  T
Sbjct: 3462 EDLTPGSLVMKLDSVQQVLITAQSDDRT 3489



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 12/94 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDN--TPYFT 69
            + P  G L  ++ LD+E   +YNL+V A +    +++   C V + +LD N+N   P F+
Sbjct: 1101 IEPSTGALTLERELDFERRPMYNLTVRAVDHGLPRSLSSSCFVEIQVLDVNENLYRPTFS 1160

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            +  Y   V E A +G+ V+T T       A DKD
Sbjct: 1161 EFVYEAAVIEDAAVGSSVVTLT-------ASDKD 1187



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+++T+K LDYE  + + L V AT+       +   V ++I D NDN P F    +   V
Sbjct: 2453 GLIVTRKVLDYEERKQFKLKVRATDNGSVPLSSEAFVTINITDVNDNPPDFISSEFKAKV 2512

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
             E A  G LV+        I+A D DS
Sbjct: 2513 DETANCGHLVVK-------IQASDPDS 2532



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 4/94 (4%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
            P+  FAI++   +  +G L+ K+ LD E    + L VTAT+    +A  +V +H+LD ND
Sbjct: 3079 PLGQFAIIQEDENQ-WG-LIVKESLDRETKDRFTLRVTATD-GKFEAAVTVEIHVLDLND 3135

Query: 64   NTPYFTQLNYTGYVSE-AAPIGALVLTNTSLPLV 96
            N+P   QL YT  V E ++P   L+  + S P V
Sbjct: 3136 NSPTCEQLLYTETVMENSSPRRFLLKVSASDPDV 3169



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRND 63
            + FAILK       G ++T +PLD E +  ++  + V A +  G  A C+V + + D ND
Sbjct: 2651 EKFAILKD------GQIITTQPLDRENSTQKVVAIKVMAKDGGGRVAFCTVKIILTDEND 2704

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P F    Y   +      G+ V+        + A D D   NA
Sbjct: 2705 NVPQFKASEYQVSIQSTVNKGSPVIQ-------VMAYDADDGKNA 2742



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T + +D E +R++  +V AT+  G   + S   V V + D NDN P F++  Y G 
Sbjct: 2983 GWITTLREVDCERSRMFRFNVVATDHGGEVKLSSSVRVEVMVTDENDNPPTFSEEVYRGS 3042

Query: 77   VSE 79
            V E
Sbjct: 3043 VVE 3045



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 28  LDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E+   Y L++TA ++    ++V  ++ V+ILD NDN P F Q  Y   V E   +G+
Sbjct: 905 LDRESKEFYILNITAYDLGMPQRSVWKLMAVNILDVNDNPPMFDQPRYVIRVPENTAVGS 964

Query: 86  LVLT 89
           +V T
Sbjct: 965 VVFT 968



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILD 60
            P+Q F+I   +     G +  +  LD E T  Y+L+V A +  G+  + S   + + + D
Sbjct: 3586 PLQQFSIDHRS-----GEITVRTALDREQTPHYSLTVQAAD-EGSPPLSSAALITITVSD 3639

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVL 88
             NDN P F+Q+N+   + E   +G+ +L
Sbjct: 3640 VNDNPPVFSQVNHHLLLQEGEAVGSTIL 3667



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAK--AVCSVIVHILDRNDNTPYFTQLNYTG 75
            G ++    LD EA   +NL + A + A  G +  +  S+++ + D NDN P F    Y  
Sbjct: 1000 GEVIVTGQLDREAVASHNLWIQARDQAKHGPQLFSTISLLIILQDINDNPPRFVPPGYRI 1059

Query: 76   YVSEAAPIGALVLTNTSLPL 95
             V+E  P+G ++L   S+ L
Sbjct: 1060 KVAEDVPVGTILLWVESIDL 1079



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 15  LHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQ 70
           + P  GV+LT + LD+E A R+Y+L V A++        + C V + + + NDN P F +
Sbjct: 641 IDPFTGVILTSEHLDFELANRLYHLRVWASDSGSPFSQVSECPVTITLNNINDNFPVFER 700

Query: 71  LNYTGYVSEAAPIGALV 87
           +     V    P+G  V
Sbjct: 701 VGCNITVPLDLPVGREV 717



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G +  KKPLD+EA   Y L+V AT+    G   V  + + +  RN + P F  L 
Sbjct: 2242 IDPDVGDISLKKPLDFEALNKYVLTVLATDEGEPGLSTVSQLSIQV--RNQSNPIFQTLL 2299

Query: 73   YTGYVSEAAP 82
            Y   V E  P
Sbjct: 2300 YPLKVPENVP 2309



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTAT-NMAGAKAVCSVIVHILDRNDNTP 66
           F  L+      Y  LL ++  D      Y L+V AT ++   KA   V+V +LD ND  P
Sbjct: 229 FCFLRLKTRSSYSALLNREVRD-----TYTLTVEATESIFDLKAKTKVLVQVLDTNDLKP 283

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            F   +Y   + E  P+ + V+        + A D D  +NA
Sbjct: 284 LFYPASYNVAIREDTPLKSSVVR-------VSATDADEGSNA 318



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G LLT   LD E+   +NL   AT+  G      + + + D NDN P F+  +Y      
Sbjct: 3194 GELLTLAVLDRESDGEFNLVAKATDGGGRSCQADIQLMVQDMNDNQPLFSASHYM----- 3248

Query: 80   AAPIGALVLTNTSL--PL-VIRAEDKDSETNA 108
                   V  NT++  P+ VI A+D D+  N+
Sbjct: 3249 -----VTVFDNTTVRTPVAVIYAKDPDAGINS 3275



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            GV+ T + LD E    Y LSV AT++ G + + S   V + +LD NDN P  +Q  Y   
Sbjct: 1214 GVIRTSELLDRETVPHYWLSVFATDL-GTEPLVSWTHVFLEVLDVNDNAPQLSQPIYFAS 1272

Query: 77   VSE 79
            V E
Sbjct: 1273 VQE 1275



 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFT 69
            + P  GV+ T   LD E    +++ V  ++ A    ++  +V++ +LD NDN P FT
Sbjct: 1313 IDPKTGVISTLAALDREEKPEHSIEVVVSDNAAPALRSTATVVIKVLDSNDNRPKFT 1369


>gi|357610242|gb|EHJ66890.1| hypothetical protein KGM_21712 [Danaus plexippus]
          Length = 4656

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +L+P  GVL    PLDYE   +YN++V A NM G  A   V +H+LDRN++ P   +  Y
Sbjct: 1818 SLNPSSGVLSLASPLDYETQDMYNVTVVALNMGGGGARARVTIHVLDRNESPPVLLRHEY 1877

Query: 74   TGYVSEAAPIGALVLTNT---SLPLVIRAEDKDSETN 107
             G +SEAA +GALV   +   +  LV    D DS  N
Sbjct: 1878 HGRISEAAAVGALVTDASRGGAEALVFETTDADSSAN 1914



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 38/68 (55%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GVLL   PLD E   +Y +++ AT+  G +A   V V + D NDN P F+   Y+  + E
Sbjct: 950  GVLLVCAPLDRERRALYEITIRATDGGGLRAEALVRVAVDDVNDNAPKFSLSAYSARIRE 1009

Query: 80   AAPIGALV 87
              PIG LV
Sbjct: 1010 DVPIGTLV 1017



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            G++   +PLDYE  + Y L+V A +  G+  +    ++ + I+D NDN P F+Q +Y   
Sbjct: 3399 GIVSIARPLDYERRKEYYLTVQAVD-GGSPPLSDHATINITIMDSNDNPPVFSQTSYGAK 3457

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E A +G  ++        + A+D D+ TN 
Sbjct: 3458 VREDAGVGVRIVQ-------VIADDADAGTNG 3482



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 13/106 (12%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRN 62
            P  LF I     H   G L+ +  LD+E    ++L+V AT+ + GA A  ++ + + D N
Sbjct: 2338 PDDLFEI-----HFDTGTLVARAALDHETACEHSLTVRATDGVTGAFADLALTLTVTDVN 2392

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D  P F    Y   VSEAA +G  VL        +RA D D+  N 
Sbjct: 2393 DCAPEFDTDEYRAGVSEAAAVGDAVLR-------VRATDADAGDNG 2431



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQ 70
           ++P  GVL T  PLD E   +Y L+V+A +   A    ++   V + I+D NDN P F +
Sbjct: 474 VNPDTGVLYTAIPLDAEEKSLYTLTVSAIDQGNAGIRKQSSAKVKIAIIDANDNDPVFER 533

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 + E    G +V         I A D DS  NA +
Sbjct: 534 EEIEVSLQENGATGVIVAR-------IVARDADSGENAYI 566



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G LL  + LD E    Y+LSV AT+     A  +V + I+D NDN PY  +  Y   +SE
Sbjct: 3090 GELLVARALDRETEPAYSLSVAATD-GKFTAYTAVHITIIDVNDNPPYCVRHRYRVRLSE 3148

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP G  +++     L+ R  D D   NA L
Sbjct: 3149 DAPRGTRLVS-----LLTR--DDDEPQNARL 3172



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     LD E+   Y L V A +  +   +A   V V +LD NDN P F + NYT  V
Sbjct: 3504 GYISVSSRLDRESKPAYVLEVRARDRGLPALEATAVVNVEVLDANDNPPLFEKTNYTEVV 3563

Query: 78   SEAAPIGALVL 88
             E  P+G  +L
Sbjct: 3564 QENKPLGHTIL 3574



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN--TPYFTQLN-Y 73
            G L T K LD+E  ++Y ++V AT+  G  A+ S   +IV + D ++N  TP F +    
Sbjct: 1054 GTLRTAKQLDFEERQVYGVTVRATD-GGRPAMWSEATLIVEVADVDENAYTPVFAERQAL 1112

Query: 74   TGYVSEAAPIGALVLT 89
            +  V E AP G +VL+
Sbjct: 1113 SASVPEDAPPGTVVLS 1128



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            +H   G +    PLD E    Y L+  A +   ++  CS  + +   D NDN P F+   
Sbjct: 3186 IHKEMGAVSVAAPLDRETRSTYRLTAHAQDRERSEWACSSEIEVTLDDINDNAPRFSAPL 3245

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  + E A +G LV         + A D D   N L+
Sbjct: 3246 YSVTLPEDAELGTLVAK-------VHATDDDLGENRLI 3276



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 20  GVLLTKKPLDYEATRI-YNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G + T + LDYE+ R  Y L + A++       +A   + V + D NDN P F +++  G
Sbjct: 585 GAVRTTRLLDYESMRREYILQIRASDWGLPYRRQAEMRLTVRLEDVNDNRPQFERVDCVG 644

Query: 76  YVSEAAPIGALVLT 89
           Y+S    IG  ++T
Sbjct: 645 YLSRNLAIGLEIVT 658



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A+ P  G L T+ PLD E    + + V A++  G     +V V + D NDN P F    Y
Sbjct: 2664 AIDPNSGALTTRVPLDRERRAEWEVPVMASDGGGLLRHTAVRVRVADLNDNAPAFPLREY 2723

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                      G   LT       + A D+D   NA L
Sbjct: 2724 RAAAKHDRVPGVPFLT-------LSASDEDVGENARL 2753



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 6    QLFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVI 55
            + F IL+P       L P    L    PLDYE  R++  +V   +M   +    +V  V 
Sbjct: 1917 RAFEILEPRAAGLFRLDPTTAALQLAAPLDYEEQRVHVFTVKVLDMGMPRLPSDSVARVT 1976

Query: 56   VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
            V + + ND  P F++  Y   V      G  VLT
Sbjct: 1977 VEVTNFNDCPPVFSRSVYEATVLLPTAAGVRVLT 2010



 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
            G L+   PLD E  + + + + A    G+++   V   +H+LD N++ P F    Y  ++
Sbjct: 2875 GRLVLSAPLDRETAQEHIIGIIAEGSLGSESATMVTTKLHVLDVNEHAPSFHSQPYVVHL 2934

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +E  P  + VL        + A+D D+ +N 
Sbjct: 2935 AENTPAHSSVLR-------LMADDPDAGSNG 2958


>gi|38146371|gb|AAR11558.1| fat3-like [Gallus gallus]
          Length = 142

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 50/76 (65%)

Query: 35  IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLP 94
            Y L+V ATNMAG  +  +V + I+D NDN P F    Y+G +SEAAPI ++V +  + P
Sbjct: 4   FYQLTVQATNMAGMASNATVNIQIVDENDNPPVFLFSQYSGSISEAAPINSIVRSTNNSP 63

Query: 95  LVIRAEDKDSETNALL 110
           LVIRA D DS  NA+L
Sbjct: 64  LVIRATDADSNQNAML 79


>gi|195129685|ref|XP_002009286.1| GI13952 [Drosophila mojavensis]
 gi|193920895|gb|EDW19762.1| GI13952 [Drosophila mojavensis]
          Length = 2436

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 3/99 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++    +DYE  +IYNL+V ATNMA   +  +VI+H+LD NDN P F Q  Y 
Sbjct: 1758 INPSTGVIVINTNVDYEIIKIYNLTVKATNMASQSSCQNVIIHVLDMNDNIPKFLQSEYI 1817

Query: 75   GYVSEAAPIGA---LVLTNTSLPLVIRAEDKDSETNALL 110
            G VSE+A +G+   ++       L +   D D   NA+L
Sbjct: 1818 GSVSESAALGSYVHIIDDKKKRHLKLNVSDADVGPNAML 1856



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL--DRNDNTPYFTQ 70
           ++P  G+L T+K LD E    Y L+V+A + A  G++   S  V I   D NDN P F  
Sbjct: 446 INPDSGMLYTQKHLDAEKKSTYTLTVSAIDQADVGSRKQSSAKVKITIDDMNDNDPIFEN 505

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N T  +SE    G  V+  T       A+DKDS  NA +
Sbjct: 506 INSTIEISENELAGLFVVKLT-------AKDKDSGENAYI 538



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LDYE    YNLS++ T+ +   A   + + ++D NDN P FT+  Y   +SE
Sbjct: 1455 GNVLLSKYLDYETQTSYNLSISVTDGSNI-AHTWLYIQVVDTNDNAPQFTKEIYHVNISE 1513

Query: 80   AAPIGALVLTNTSLPLVIRAEDK 102
                 ++++    L    R EDK
Sbjct: 1514 NIEEESVIM---QLHATDRDEDK 1533



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDN--TPYFTQLNYTG 75
            G + T+  L+YE  +++NL V+A +           VI+ I+D N+N   P F    Y G
Sbjct: 1032 GAIRTEGYLNYENRQVHNLIVSAIDCGVPSLTVDMPVIIEIIDVNENRYAPEFDDFIYEG 1091

Query: 76   YVSEAAPIGALVLTNTSLPL 95
             + E  P G LV+  T+  +
Sbjct: 1092 KIQENMPKGTLVMNVTARDM 1111



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEA-TRIYNLSVTATNMA-GAKAVCSVIVHILDRN--DNTPYFTQLNYTG 75
           GV+ T   +DYE   R Y L V A++     +    + + I+ RN  DN P F ++N  G
Sbjct: 557 GVIKTTNLIDYETMQRNYTLLVRASDWGLPYRRQTEIALDIIVRNINDNRPQFERVNCHG 616

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            V ++APIG+ V T +++ L
Sbjct: 617 KVIKSAPIGSEVFTISAVDL 636



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G ++  + LD E    Y L + A ++         +V++L  D NDN P F   +Y   V
Sbjct: 926  GCIVLNEFLDREQNDKYELHIIAKDLGYPTLSSEAVVYVLVDDVNDNAPIFGVQDYIFKV 985

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
             E  P G +V        VI A DKD
Sbjct: 986  REDVPRGTVV-------AVIEAFDKD 1004



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G L     LD+E   I+ +S+ AT+ ++G  A   V + ++D ND  P      Y   + 
Sbjct: 2286 GSLYVVNELDFEEKNIHEISIRATDSISGIYADVLVSITVIDVNDCYPDIENDYYNITLP 2345

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P G+ +L        I A D+DS  N  L
Sbjct: 2346 ENIPFGSQILK-------INATDRDSGVNGKL 2370



 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            V++T+K LD+E T  + L     +    G +    +IV++ D ND+ P FT       V 
Sbjct: 1560 VIVTQK-LDFEKTSQHILIAFVKDQGTPGKRNYAKLIVNVHDHNDHPPEFTAKIIQSKVP 1618

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+A IG+ ++        + A D+DS  NA
Sbjct: 1619 ESAAIGSKIVQ-------VMAIDRDSGKNA 1641


>gi|195022843|ref|XP_001985650.1| GH17186 [Drosophila grimshawi]
 gi|193899132|gb|EDV97998.1| GH17186 [Drosophila grimshawi]
          Length = 4534

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 2/98 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++    +DYE  R++NL++  TNMA A +  +VIVH+LD NDN P F Q  Y 
Sbjct: 1613 INPSTGVIVINSNVDYEINRMFNLTIKGTNMASAFSHQNVIVHVLDVNDNVPKFLQTEYI 1672

Query: 75   GYVSEAAPIGALV--LTNTSLPLVIRAEDKDSETNALL 110
            G +SE+A +G+ V  +      L + A D D   N +L
Sbjct: 1673 GTLSESANLGSYVQKVDEKKRHLTVNAFDADVGLNGML 1710



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL--DRNDNTPYFTQ 70
           ++P  G+L T+K LD E    Y L+V+A + A  G++   S  V I   D NDN P F  
Sbjct: 301 INPDSGMLYTQKRLDAETKSSYTLTVSAIDQADVGSRKQSSAKVKITVEDMNDNDPIFEN 360

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N   Y++E    G++V         + A+DKDS  NA +
Sbjct: 361 INRIIYINENELAGSIVTK-------LTAKDKDSGENAYI 393



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   +PLD E    YNLS+ AT+        +V VHI D NDN PY  +  Y   V E
Sbjct: 2868 GELFISRPLDREEVSFYNLSILATD-GKFTTESNVHVHIKDVNDNMPYCLKPRYHITVDE 2926

Query: 80   AAPIGALVLTNTSLPL 95
            + PIG+ ++   ++ L
Sbjct: 2927 STPIGSTIVEVKAIDL 2942



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL     +DYE ++ Y L+V A +        +  V + I D NDNTP FTQ  Y   V
Sbjct: 3177 GVLWVNGTVDYEKSKFYFLTVQAIDGGSPPFSNIAYVNITIEDVNDNTPTFTQNIYRTSV 3236

Query: 78   SEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
             E   +        +LP++ ++A D+DS  N ++
Sbjct: 3237 REDISV--------NLPIIDVKATDEDSNLNGII 3262



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   +PLD E    Y L V A +    +   SV V+I  LD NDN P F+Q NY+  +
Sbjct: 3282 GTISLARPLDRETISDYVLEVQACDFGIPERCNSVQVNICILDANDNAPIFSQTNYSIVL 3341

Query: 78   SEAAPIGALVL 88
             E  P+G + +
Sbjct: 3342 QENRPLGYVFI 3352



 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++  +K LD E   +YN +V   +       +V +++++ILD NDN P F+   Y  ++
Sbjct: 3072 GIIKLEKNLDRETISLYNFTVKVEDFGKPILSSVANIVINILDINDNPPEFSLRQYKSHM 3131

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E    G+ V         I A  KD   NA
Sbjct: 3132 YENVTRGSEVCK-------IHATSKDIGVNA 3155



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVS 78
            G +L  K LDYE    YNL+++ T+  G+  V + + + ++D NDN P FT+  Y   +S
Sbjct: 1310 GNVLLSKYLDYETVTSYNLTISVTD--GSNIVYTWLFIQVVDTNDNAPQFTKEIYHVNIS 1367

Query: 79   EAAPIGALVLTNTSLPLVIRAEDK 102
            E     ++++    L    R EDK
Sbjct: 1368 ENIDEESVIM---QLHATDRDEDK 1388



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 7   LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDN 64
           LF I K +     G + T+  LDYE  +++NL ++A +       A   +++ I+D N+N
Sbjct: 879 LFKIDKHS-----GAIRTEGYLDYENRQVHNLVISAIDCGIPSLTADMPIVIEIIDVNEN 933

Query: 65  --TPYFTQLNYTGYVSEAAPIGALVL 88
              P F    + G + E  P G LV+
Sbjct: 934 RFAPEFEDFVFEGKIRENMPKGTLVM 959



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G ++  K LD E    Y L +   +          IV+IL  D NDN P F    Y   V
Sbjct: 781 GCIVLSKSLDREHKDKYELHIVVKDRGSPVLSTEAIVYILVDDVNDNAPIFGVQEYMFKV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G +V        VI A DKD   NA
Sbjct: 841 REDVPRGTVV-------AVIEAIDKDLAQNA 864



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  K PLDYE  R Y+  V      G+    + C+V + + D NDN+P F + ++   
Sbjct: 2247 GSLYLKTPLDYELKR-YHHVVVHVKDHGSTPLTSKCNVFITVKDLNDNSPQFIEPSFNTK 2305

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +S AA  G  V    +LP   RA D D+
Sbjct: 2306 LSVAATRGQFV----ALP---RAFDNDT 2326



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 20  GVLLTKKPLDYEATRI-YNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T   +DYE  R  Y L V A++       +   ++ + + + NDN P F ++N  G
Sbjct: 412 GVIKTTNLIDYETMRRNYTLLVRASDWGLPYRRQTEIAIDIIVQNINDNRPQFERVNCYG 471

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAE 100
            V ++A IG+ V T +++ L +  E
Sbjct: 472 KVIKSASIGSEVFTISAIDLDVGDE 496



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G L     LDYE    + +S+ AT+ ++G  A   + + ++D ND  P     NY   + 
Sbjct: 2140 GSLCVVNELDYEEKNAHEISIRATDSISGIYADVLLSITVIDVNDCYPEIESDNYNITLP 2199

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P G+ +L        I A D DS  N  L
Sbjct: 2200 ENTPFGSQILQ-------INATDLDSGANGKL 2224



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 28   LDYEATRIYNLSVTAT-------NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
             D E   +Y L   A        N++  +A+ SV + +LD NDN P F  + Y   VS  
Sbjct: 1939 FDRETQDMYKLYFEAKSTVFSGDNISTRRALTSVYISVLDINDNCPMFVNMPYYASVSVG 1998

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNA 108
               G ++L        ++A D DS  N 
Sbjct: 1999 FTKGTIILK-------VKAIDLDSAENG 2019



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            V++T+K LD+E T  + L     +    G +    +IV++ D ND+ P FT+        
Sbjct: 1415 VIVTQK-LDFEKTSQHILIAFVKDQGTPGKRNYAKIIVNVHDHNDHYPEFTRKIIQSKAP 1473

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E+A IG+ ++  T++       D+DS  NA
Sbjct: 1474 ESAAIGSKLVQVTAI-------DRDSGQNA 1496



 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   K LD E    Y L   V        + V  +I+ + D NDN P F+  NY   +
Sbjct: 2968 GVLKVAKTLDREKIAKYKLYAHVQDGKEFIRECVSEIIITVNDINDNAPIFSLTNYRVSI 3027

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
             E A +  LV         + A DKD
Sbjct: 3028 QEDAQLQTLVTK-------VHATDKD 3046


>gi|47213179|emb|CAF95368.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3762

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 48/79 (60%)

Query: 32   ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNT 91
            A R   L V+A+ + GA +   V +++ D NDN P F Q  Y G +SEAA IGA+V    
Sbjct: 1666 APRWSRLEVSASTVGGASSSTFVSIYVTDENDNAPVFRQKEYLGQISEAADIGAMVTGEG 1725

Query: 92   SLPLVIRAEDKDSETNALL 110
            S PLVI+A D D + NALL
Sbjct: 1726 SRPLVIQASDADRDANALL 1744



 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  GV++T + LDYE+ R Y   V A    G +A   V++ + D NDN+P F   +Y 
Sbjct: 373 INPLTGVIVTTQKLDYESKRRYQFDVAAN---GGEAEARVVIEVKDENDNSPQFASPSYE 429

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E AP+G+ VL        + A D D   NA +
Sbjct: 430 ASLDENAPVGSSVLQ-------VSATDADGGKNAFV 458



 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L+ +KP+D+E T+ Y + V A       AV S++   + + D NDN P F    Y  +
Sbjct: 2691 GTLVLQKPMDHERTKWYQIDVMAQGNHNGTAVASLVSISIQVQDVNDNEPLFDASPYRAF 2750

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++E  P G  V+        + A D DSETN L+
Sbjct: 2751 LAENMPAGTTVIQ-------VTANDADSETNGLV 2777



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+ R + L+V A++ + G  +  SV + + D NDN P F+Q  Y   V+
Sbjct: 2167 GVLTVTDPLDYESQRAHVLTVRASDSVTGVFSEASVEIEVEDVNDNAPVFSQRAYGAVVA 2226

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P+G  V+        + A D DS  N
Sbjct: 2227 EGLPVGTSVVQ-------VSASDGDSGRN 2248



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
            P+  FAI++ +    +G++LT+ PLD E    + L V AT+    +A  SV VH+LD ND
Sbjct: 2901 PLGHFAIIQQS-EGGWGLILTQ-PLDREVKDRHALRVMATD-GKFQASVSVDVHVLDIND 2957

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVL 88
            N+P   QL YT  V E +P    VL
Sbjct: 2958 NSPQCEQLVYTEAVMENSPSSRFVL 2982



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV++TK+ LD+E T  ++L + AT+   A   +  SV+V++ D NDN P F    
Sbjct: 2268 IDPHTGVIVTKQVLDHEGTNQFHLKIRATDNGTAPLSSEASVLVNVTDVNDNPPDFVSSQ 2327

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   + E A  G +V+        I+A D DS
Sbjct: 2328 YEATLDEKAKCGHIVIK-------IQASDPDS 2352



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 6/97 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G+L    PLD+EA+R Y LSV           + +V+V++ D NDN P F +  Y   + 
Sbjct: 3210 GLLTLVAPLDFEASRTYYLSVEGRRGKQTLSDITTVMVNVTDVNDNAPVFEEGGYRVEIK 3269

Query: 79   EAAPIGALVL-TNTSLPLV----IRAEDKDSETNALL 110
            E  P G+LV+      P V    + A D+D  +N+LL
Sbjct: 3270 EDLPPGSLVMKVPAQEPPVFGGKVTASDQDGPSNSLL 3306



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT-NMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            G + T +  D EA R+Y  SV AT N  G +   SV+V +   D NDN P F+   Y G 
Sbjct: 2805 GWITTTQEADCEAVRVYRFSVVATDNGGGLRLSSSVLVEVTVTDENDNPPKFSLEAYRGS 2864

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDK 102
            V E +  G ++++ T+    +  E++
Sbjct: 2865 VVENSSPGEVLVSMTTADADVSLENR 2890



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DR 61
            P+Q F+I     HP  G +     LD E    Y+L+V A +        +++V I   D 
Sbjct: 3315 PLQQFSI-----HPRSGEISVAAALDREEVPHYSLTVQAADGGDPPLSSAILVTITVADV 3369

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVL 88
            NDN P F+++N++  + E  P+G+ VL
Sbjct: 3370 NDNPPIFSRVNHSLLLQEGEPVGSSVL 3396



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT----QLNY 73
            G ++T +PLD E  A RI  + V A +  G  A C+V + + D NDN P F     Q++ 
Sbjct: 2479 GQMVTTQPLDRENPAQRIIAVKVMAKDGGGKVAFCTVRIILTDENDNVPQFAASEYQVSI 2538

Query: 74   TGYVSEAAPI 83
               V++ +P+
Sbjct: 2539 QSTVNKGSPV 2548



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDN--TPYFTQLNYT 74
            G L  ++ LD+E  R Y L+V A +    +++   C V + +LD N+N   P F++  Y 
Sbjct: 937  GALTLERELDFERRRSYTLTVRAVDHGLPRSLSSSCFVEIEVLDVNENLHRPLFSEFVYE 996

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              V E A +G  VL  T       A DKD
Sbjct: 997  AAVMEDAAVGTSVLKLT-------ASDKD 1018



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G LLT   LD EA   YNL   AT+  G      +++ I D NDN P F+  +Y
Sbjct: 3016 GELLTLAVLDREAEPEYNLVAKATDGGGRSCQSDILLMIQDMNDNPPRFSSSHY 3069



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 28  LDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y L++T  +  M    A   V V + D NDN P F QL Y   V E A + +
Sbjct: 736 LDRERNAFYVLNITVYDLGMPQKTAWRFVAVTVTDVNDNPPEFDQLRYVTRVPENAEVDS 795

Query: 86  LVLT 89
           +V T
Sbjct: 796 VVFT 799



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 8   FAILKP----ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDR 61
           F++L P    ++ P  G +  K PLD E T  ++L + A + A  G + V  V + ++ +
Sbjct: 815 FSLLTPTNAFSIDPVTGEVTLKAPLDRETTPRHDLQIVAKDGAERGPRLVSVVDLVVVLQ 874

Query: 62  --NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
             NDN P F   NY   V E  P+G L+L   S+ L
Sbjct: 875 DVNDNPPRFLPHNYKIKVPEDLPVGTLLLWVESVDL 910



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)

Query: 15  LHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQ 70
           +HP  GV+ T   LDYE   R Y+L V A++        + C V + + + NDN P   +
Sbjct: 472 IHPFTGVISTSGHLDYELMRRRYHLRVWASDSGSPFSRVSECPVTITLNNVNDNIPLLER 531

Query: 71  LNYTGYVSEAAPIGALVL 88
           +     +   AP+G  V+
Sbjct: 532 VGCNTTLPVDAPVGGTVV 549



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+L  ++PL  +A   + L V AT+    +   ++ +V V ++  +D  P F    YT  
Sbjct: 3104 GLLRLERPLTPDAPPTFELKVKATDRGLPRHLYSIATVTVAVVSLDDYQPVFLSSEYTAQ 3163

Query: 77   VSEAAPIGALVLTNTSL--------PLVIRAEDKDSETNALLDGSTN 115
            + E+  +G+ VL+ ++L        P+  R    + +   LLD  T 
Sbjct: 3164 LPESFAVGSQVLSLSALTRDGGGPDPVAYRIVSGNEDGRFLLDSRTG 3210



 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 28  LDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           L+ E    Y L+V AT  +   +A   V+V +LD ND  P F   +Y+  ++E A + + 
Sbjct: 75  LNREVRDAYTLTVEATEKSSDLRAKTKVLVRVLDANDLKPLFYPASYSVSIAEDAELRSS 134

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
           V+T       + A D D  +NA
Sbjct: 135 VVT-------VSATDADVGSNA 149


>gi|195435720|ref|XP_002065827.1| GK20296 [Drosophila willistoni]
 gi|194161912|gb|EDW76813.1| GK20296 [Drosophila willistoni]
          Length = 4674

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 47/73 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV++    +DYE  + +NL+V  TNMA   +  ++IVH+LD NDN P F Q  Y 
Sbjct: 1757 INPSTGVIVINSNIDYETNKFFNLTVQGTNMASGSSSQNIIVHVLDVNDNIPRFLQSEYV 1816

Query: 75   GYVSEAAPIGALV 87
            G VSE+A +G+ V
Sbjct: 1817 GTVSESATVGSRV 1829



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
           ++P  G+L TKK LD E    + L+V+A + A  G++   S  V ++I D NDN P F  
Sbjct: 446 INPDSGMLYTKKQLDAERKSQFTLTVSAIDQANVGSRKQSSAKVKINIQDMNDNDPIFEN 505

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N    ++E    G+ V         + A+DKDS  NA +
Sbjct: 506 MNRNISINENNLSGSFVAK-------VSAKDKDSGENAYI 538



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G +   +PLD E    YNL + A +  G    C    +I+ +LD NDN P F+  NYT  
Sbjct: 3428 GTICVARPLDRETKAKYNLEIQACD-GGIPQRCGSVQIIIVVLDTNDNNPVFSSPNYTIV 3486

Query: 77   VSEAAPIGALVLT 89
            + E  P+G +++T
Sbjct: 3487 LQENRPLGYVLIT 3499



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-CSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G +L  KPLDYE    YNL+++ T+  G+  +  ++ + ++D NDNTP FT+  Y   +S
Sbjct: 1454 GNILLSKPLDYEKQTSYNLTISVTD--GSNIIYTNLFIQVIDTNDNTPQFTKDIYHVNIS 1511

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSE 105
            E        +   S+ + + A DKD +
Sbjct: 1512 EN-------IEEESIIMQLHATDKDED 1531



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++  +K LD E   ++NL+V A +    +  +  +++++ILD NDN P F+   Y   V
Sbjct: 3218 GIIRLEKNLDRETIPMFNLTVKAEDHGVPRLYSTANLLINILDINDNPPEFSLRQYLCQV 3277

Query: 78   SEAAPIGALVLT 89
             E A IG  V T
Sbjct: 3278 HENATIGVEVCT 3289



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  KKPLDYE  + +++ V   +       + C++ + + D NDN P F + ++   +
Sbjct: 2392 GHLYLKKPLDYELKKFHHIVVHVKDHGSPPLSSRCNIFITVKDLNDNAPRFIEPSFFTKL 2451

Query: 78   SEAAPIGALV 87
            S AA  G  V
Sbjct: 2452 SVAAKRGQFV 2461



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT 69
            K ++    G L   + LDYE ++ Y L++ A +        +  V + +LD NDN+P F 
Sbjct: 3315 KFSIDSKTGALTLNESLDYEMSKYYYLTIQAIDRGTPPLSNIAHVNISVLDVNDNSPKFV 3374

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y   V E   +G  + T       ++A D D+  NA L
Sbjct: 3375 QDIYRVNVLEDIALGKQIAT-------VKAIDDDAGLNAKL 3408



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN--TPYFTQLNYT 74
            G + T+  L+YE  +++NL V+A +  G+ ++ S   +++ I+D N+N   P F    + 
Sbjct: 1031 GAIRTQGYLNYENRQVHNLVVSAID-GGSPSLTSDMPIVIEIIDVNENRFAPEFDDFVFQ 1089

Query: 75   GYVSEAAPIGALVLTNTSLPL 95
            G + E  P G  VL  T+  +
Sbjct: 1090 GIIKENRPKGTFVLNVTARDM 1110



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G ++  KPLD E    Y L +TA +          +V+IL  D NDN P F    Y   V
Sbjct: 925  GCIVLSKPLDREKQDRYALHITAKDGGTPTLSSEALVYILVDDVNDNAPVFGVQEYIFKV 984

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  P G ++        VI A D+D   NA
Sbjct: 985  REDLPRGTVI-------AVIEAIDQDIGPNA 1008



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 8/85 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   K LD E    YNLS+ AT+     A  +V + + D NDN PY  +  Y   V+E
Sbjct: 3013 GELFITKQLDRENISFYNLSLLATD-GKFIAEANVEIQVKDINDNLPYCLKPRYHINVNE 3071

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDS 104
            + P G  VLT+      ++A D DS
Sbjct: 3072 SIPAGT-VLTD------VKAIDFDS 3089



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEATRI-YNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T   +D+E  R  Y L + A++       +    + + + D NDN P F ++N  G
Sbjct: 557 GIIRTTSLIDFETMRRNYALIIRASDWGLPYRRQTEIELSIVVKDINDNRPQFERINCYG 616

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            + ++APIG+ + T +++  
Sbjct: 617 KILKSAPIGSDIFTVSAIDF 636



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + LD+E T  + L V   +    G +    +IV++ D ND+ P FT       V
Sbjct: 1557 GNVIVTQRLDFEKTAQHILVVFVKDQGTPGKRNYAKIIVNVHDHNDHYPEFTAKIIQSKV 1616

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E+A IG+ +         + A D+DS  NA L
Sbjct: 1617 PESAAIGSKLTE-------VLAIDRDSGQNAEL 1642


>gi|195378480|ref|XP_002048012.1| GJ13735 [Drosophila virilis]
 gi|194155170|gb|EDW70354.1| GJ13735 [Drosophila virilis]
          Length = 4641

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 47/73 (64%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  GV+     +DYE  +I+NL++  TNMA   +  ++IVH+LD NDN P F Q  Y 
Sbjct: 1721 INPSTGVIAINANVDYELNKIFNLTIKGTNMASQSSRQNLIVHVLDANDNVPKFLQSEYI 1780

Query: 75   GYVSEAAPIGALV 87
            G VSEAA +G+ V
Sbjct: 1781 GRVSEAASLGSYV 1793



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   +PLD E T  YNLS+ AT+     A+ +V VHI D NDN PY  +  Y   ++E
Sbjct: 2977 GELFISRPLDREQTAFYNLSILATD-GKFTAMSNVQVHIKDVNDNMPYCLKPRYHITINE 3035

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +  IG+ ++        ++A D DS T+  L
Sbjct: 3036 SIAIGSTIVE-------VKAMDFDSSTDFKL 3059



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL     LDYE T+ Y L+V A +        +  V + I D NDNTP FTQ NY   V
Sbjct: 3287 GVLWVNGTLDYEKTKFYFLTVQAIDGGSPPLSNIAYVNISIDDVNDNTPTFTQNNYRASV 3346

Query: 78   SEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
             E          N  +P++ ++A D+DS  N ++
Sbjct: 3347 KEDV--------NIDVPIIDVKATDEDSNLNGII 3372



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
           ++P  G+L T+K LD E    Y L+V+A + A  G++   S  V + I D NDN P F  
Sbjct: 409 INPDSGMLYTQKQLDAETKSSYTLTVSAIDQADVGSRKQSSAKVKITIEDMNDNDPIFEN 468

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +N   Y++E    G+ V         + A+D+DS  NA +
Sbjct: 469 MNKVIYINENELAGSFVTK-------LTAKDRDSGENAYI 501



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   +PLD E    Y L V A ++   +   SV+V++  LD NDN P F+Q NY+  +
Sbjct: 3392 GTISLARPLDRETISDYALEVQACDLGIPERCDSVLVNVAVLDANDNAPVFSQANYSVVL 3451

Query: 78   SEAAPIGALVL 88
             E  P+G + +
Sbjct: 3452 QENRPLGYVFI 3462



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++  +K LD E   IYNL++ A +       +V +++++ILD NDN P F+   Y+ +V
Sbjct: 3182 GIIKLEKNLDRETISIYNLTLIAEDYGKPIMSSVANIVINILDINDNPPEFSLRQYSSHV 3241

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E    G  V T       + A  KD   NA
Sbjct: 3242 HENVTQGFDVCT-------VHATSKDIGVNA 3265



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L  K LDYE    YNLS++ T+ + A A   + + ++D NDN P FT+  Y   +SE
Sbjct: 1418 GNVLLSKFLDYETQTSYNLSISVTDGSNA-AHTWLFIQVVDTNDNAPQFTKELYHVNISE 1476

Query: 80   AAPIGALVLTNTSLPLVIRAEDK 102
                 ++++    L    R EDK
Sbjct: 1477 NIEEESVIM---QLHATDRDEDK 1496



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G L     LDYE   I+ +S+ AT+ ++G  A   + + I+D ND  P     NY   + 
Sbjct: 2249 GSLYVVNELDYEEKNIHEISIRATDSISGIYADVLLSISIIDVNDCYPEIENDNYNITLP 2308

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P G+ +L        I A D+DS  N  L
Sbjct: 2309 ENIPFGSQILK-------INATDRDSGANGKL 2333



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 7    LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDN 64
            LF I K +     G + T+  L+YE  +++NL ++A +       A   +++ I+D N+N
Sbjct: 987  LFKIDKHS-----GAIRTEGYLNYENRQVHNLVISAIDCGVPSLTADMPIVIEIIDVNEN 1041

Query: 65   --TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
               P F    Y G + E  P G LV+  T+  +
Sbjct: 1042 RYAPEFDDFAYEGKIRENMPKGTLVMNITARDM 1074



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 20  GVLLTKKPLDYEATRI-YNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T   +DYE  R  Y L + A++       +   ++ + + + NDN P F ++N  G
Sbjct: 520 GVIKTTNLIDYETMRRNYTLLIRASDWGLPYRRQTEIALEIIVKNVNDNRPQFERVNCYG 579

Query: 76  YVSEAAPIGALVLTNTSLPL 95
            V ++APIG+ V T +++ L
Sbjct: 580 KVIKSAPIGSEVFTISAIDL 599



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G ++  + LD E T  Y L +   +          +V+IL  D NDN P F    Y   +
Sbjct: 889 GCIVLSEQLDREQTDKYELHIVVKDCGDPVLSAEAVVYILVDDVNDNAPIFGVQEYMFKI 948

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G +V        VI A DKD   NA
Sbjct: 949 REDVPRGTVV-------AVIEAIDKDMGENA 972



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 10/92 (10%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            V++T+K LD+E T  + L     +    G +    +IV++ D ND+ P FT       V 
Sbjct: 1523 VIVTQK-LDFEKTSQHILIAFVKDQGTPGKRDYAKIIVNVHDHNDHYPEFTTKIIQSKVP 1581

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E+A IG+ ++  T++       D+DS  NA L
Sbjct: 1582 ESAAIGSKLVQVTAI-------DRDSGKNAEL 1606



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   K LD E T  Y +   V        + V  +I+ + D NDN P F+  NY   +
Sbjct: 3078 GVLKVAKLLDRERTSKYKILAHVQDGKEFIRECVSEIIITVNDINDNAPIFSMPNYRVSI 3137

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
             E A +  LV         + A DKD
Sbjct: 3138 QEDAQLQTLVTK-------VHATDKD 3156


>gi|403285668|ref|XP_003934135.1| PREDICTED: protocadherin Fat 2 [Saimiri boliviensis boliviensis]
          Length = 4369

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 56/91 (61%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T+K LD+E    Y L +  +NMAGA     V+V I+D NDN P F +  + G +SE
Sbjct: 1730 GLISTQKNLDHEKISSYQLKIRGSNMAGAFTDVIVVVDIIDENDNAPMFLKSTFVGQISE 1789

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AAP+ ++++   + P VI A D D E N+LL
Sbjct: 1790 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1820



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  G L   K LD+E    Y+L + AT+           V + + D NDN P F QLN
Sbjct: 3391 IHPKKGELQVAKALDWEQASSYSLKLRATDSGQPPLHEDTDVAIQVADVNDNPPRFFQLN 3450

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V E +PIG+ VL
Sbjct: 3451 YSTTVQENSPIGSKVL 3466



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG V    P+G  ++T +++
Sbjct: 566 EVNCTGSVRRDWPVGKSIMTMSAI 589



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  GV+  +K +D+E+T++Y + V A  +     V   SV + ++D NDN P F   
Sbjct: 2761 SLDPDTGVIKVRKTMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVIDVNDNRPVFEAD 2820

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y   ++E  P+G  V+  T++       DKD+
Sbjct: 2821 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2846



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL    PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +S
Sbjct: 2243 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2302

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P    V+        + A D+DS  N
Sbjct: 2303 EGLPAQTPVIQ-------LLASDQDSGRN 2324



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 24   TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            ++K LD E    Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 2988 SRKTLDREHMAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3046

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  +L        + A D D++TNA +
Sbjct: 3047 GHFILK-------VSATDLDADTNAQI 3066



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 2349 GEMSTVQELDYEAQQRFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2408

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE A  G LVL        ++A D DS   + L+
Sbjct: 2409 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2435



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L T  PLD E   ++NL   AT+  G      V +H+ D NDN P F      
Sbjct: 3080 LDPHTGELTTLTPLDRERKDVFNLVAKATDGGGRSCQADVTLHVEDVNDNAPRF------ 3133

Query: 75   GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
             + S  A     V  NT++     V+ A D D  +NA
Sbjct: 3134 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGSNA 3166



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L  ++ LD+E    YNLS+ A++       + +C + V +LD N+N   P+F    + 
Sbjct: 979  GALSLERELDFERRAGYNLSLWASDNGRPLARRTLCHLEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------MVVAAHDDDSGLDGEL 1067



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   +     G + T + LD E  + YN  V A +      + S   V V I D N
Sbjct: 2866 ELFAIDSES-----GWITTLQELDCETCQTYNFHVVAYDQGQTIQLSSQALVQVSITDEN 2920

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLT 89
            DN P F    Y G V E +  G LV T
Sbjct: 2921 DNAPRFASEEYRGSVIENSEPGELVAT 2947



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E +  Y LS+  T  + +    + +V+V+I D N++ P F Q  Y+  V
Sbjct: 3291 GILYVNASLDFETSPKYFLSIECTRKSSSSLSDITTVVVNITDVNEHRPRFPQDPYSTRV 3350

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G ++LT       + A D+D   N+
Sbjct: 3351 LENALVGDVILT-------VSAADEDGPLNS 3374



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  ++  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSRAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDASDPDSSSKGKL 1172



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYE T  Y L+VT  ++   +      + V++ D ND+ P F    Y   +
Sbjct: 770 GLLTIAAPLDYETTNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDHAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  V   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTVAELTT-------KDADSEDNG 853



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +  T++  A  V  V++ I+D N
Sbjct: 396 VLKPSSENLGFKLNARTGLITTTKLMDFHDRAHYQLHIR-TSLGQASTV--VVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPIFNRSSYDGILDENIPPGTSV-------LAVTATDQDHRENG 491



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18   PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
            P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 2553 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASAYTV 2612

Query: 75   ---GYVSEAAPI 83
                 VS+ +P+
Sbjct: 2613 SIQSNVSKDSPV 2624



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 17/111 (15%)

Query: 7    LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
            ++ IL+P       + P  G L     +DYE+   +   V   +       A     VI+
Sbjct: 1821 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESRPSFKFCVYVHDQGSPILFAPRPAQVII 1880

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            ++ D ND+ P F++  Y     E A +G  +     L L++RA D DSE N
Sbjct: 1881 NVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDDDSEVN 1924



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDTPL 163


>gi|391334511|ref|XP_003741647.1| PREDICTED: fat-like cadherin-related tumor suppressor homolog
            [Metaseiulus occidentalis]
          Length = 4558

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 54/91 (59%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++ T   LDYE  + Y + V ATN+  +    ++ +H++D NDN P      Y G +SE
Sbjct: 1734 GIVTTACVLDYEQKQQYLIIVRATNLVNSWTEMALTIHVVDVNDNAPVLEPKVYFGTISE 1793

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AA   ++V+TN SLPLV+ A D D + NA L
Sbjct: 1794 AAEPSSVVMTNESLPLVVTATDADRDINAHL 1824



 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 8/88 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GV+   + LD++ T  Y+L+V AT+ ++GA +  SV +++ D N++ P F Q+ Y   VS
Sbjct: 2254 GVMYVNEELDFDKTAKYDLTVRATDSLSGAHSDVSVTIYVEDVNNHPPLFEQIMYNVSVS 2313

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSET 106
            E +P G+ +LT       +RA DKDS +
Sbjct: 2314 EVSPPGSSILT-------VRAHDKDSNS 2334



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP 66
            ++ K  L    GVL   +PLD+E TR + ++  A +    G +A   + +H+ D ND+ P
Sbjct: 1518 SVQKFHLAASTGVLQVAQPLDHEETREHIITALAKDSGWPGKRAYVRIHIHVADHNDHAP 1577

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             F Q ++ G V E+A +G  V+  T++       DKD   NA +
Sbjct: 1578 EFLQSSFEGKVFESAALGTSVVQTTAV-------DKDRGDNARI 1614



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L+  +PLD E T  Y L++TA ++   K  A  SV+V++LD NDN P F +  YT  +
Sbjct: 791 GNLMLVEPLDRERTPKYVLTITAYDLGEPKKSASISVVVYVLDVNDNPPIFEKSLYTFKI 850

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE+   GA+++        +RA D D   NA +
Sbjct: 851 SESVNKGAVMVK-------LRATDADEGDNAKI 876



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-------AKAVCSVIVHI--LDRNDNTPYFTQ 70
           G + T K LD E  R Y+L+V+ATN            AV + IV+I  LD NDN P F Q
Sbjct: 406 GQISTNKWLDREQRRYYSLTVSATNTKSRSTRHRTGAAVATTIVNINVLDCNDNAPRFNQ 465

Query: 71  -LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +     + E  PIG  V+T       + A D D E N 
Sbjct: 466 SIRSVVTIDENVPIGTKVVT-------VSATDADDEENG 497



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G++   + LDYE    Y LSV A +  G  A+ S     V +LD NDN P F + 
Sbjct: 3298 IDPESGIVSVMRSLDYETQAQYMLSVVAQD-GGTPALSSTTLLNVTVLDFNDNRPTFDKG 3356

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   + E   +G  +L        I+A D DS  N  L
Sbjct: 3357 RYNSVIREDTKVGERILQ-------IQATDADSGVNGEL 3388



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G+L+  + LD E    YNL V AT+ +          V + + D ND  P FT  NY   
Sbjct: 894 GILIVHRNLDRERQSEYNLMVKATDSSIELPLTGTTMVNIQVQDVNDERPRFTLKNYIAR 953

Query: 77  VSEAAPIGALVLT 89
           V E  P G++++T
Sbjct: 954 VREDLPKGSVIMT 966



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GVL  ++PLD E+   Y L + A++     A   V + + D NDN P   Q  Y   V E
Sbjct: 2996 GVLFVRQPLDRESQEHYILEIAASDGLHV-ANTKVSIRLRDANDNGPVCIQSKYIEQVKE 3054

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G+ +LT       + A+D D   NA +
Sbjct: 3055 DVSPGSYILT-------VAAKDADIGINAEM 3078



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 28   LDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LD E+   YNLSV A +        +  SV ++++D NDN P F++  Y   V E AP+ 
Sbjct: 2899 LDRESVPSYNLSVVARDNGSPLKQYSTSSVFINVVDYNDNPPTFSRDLYDVEVDEDAPVN 2958

Query: 85   ALVLT 89
              + T
Sbjct: 2959 TEIFT 2963



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYF 68
            L P  G L TK+ LD E   +Y +++ A +  GA+   SV+ V + D NDN P F
Sbjct: 2578 LDPDTGELRTKRTLDREKRSLYKIAIVAED-GGARIGHSVVRVTVTDENDNPPQF 2631



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 15  LHPPYGVLLTKKPLDYE--ATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFT 69
           ++P  GV+ T   +DYE  ++  Y L + AT+       +   +V V + D ND+ P F 
Sbjct: 513 INPFTGVVSTTDNIDYEKMSSSFYLLRIRATDWGTPFQRQTEMTVRVQVRDLNDHRPQFE 572

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPL 95
           +++    ++   PIG  +LT +++ L
Sbjct: 573 KVDCAVSINSQTPIGTAILTLSAIDL 598



 Score = 34.7 bits (78), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L V  T    ++ +    C V+V ILD+ND +P F    Y   VSE  P+
Sbjct: 87  LNREYQEHYKLKVRGTLQQKSRKLYDVHCDVLVTILDKNDISPLFYPKTYNVTVSEMTPL 146

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
              +L        + A+D D   N 
Sbjct: 147 FQNILK-------VNADDPDEGING 164


>gi|327265474|ref|XP_003217533.1| PREDICTED: protocadherin Fat 2-like, partial [Anolis carolinensis]
          Length = 2916

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++  +K LD+E    Y L +  TNMAG+     V V ++D NDN P F + +  G++ E
Sbjct: 276 GLISLQKNLDFEQNSSYQLKIHGTNMAGSFMDVPVFVFVVDENDNAPTFDKSSVVGWIKE 335

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G++V+   + PLVI A D D ++N+LL
Sbjct: 336 NVPKGSMVMDENNAPLVIHASDADQDSNSLL 366



 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G L+T   LD++   ++ L+V   +  G   +    V++H+ D N++ P FT L+
Sbjct: 66  IDPSSGALMTVAGLDFQTMSLHTLTVMVRDQEGPIKRDFARVVIHVEDSNNHPPQFTSLH 125

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   V +AAP+G  V+        +RA D+D   NA
Sbjct: 126 YNAEVLDAAPVGTEVVQ-------VRALDQDQGVNA 154



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFT 69
            K  LHP  G+L   + LD+E +  Y LSV  T  +      +  VI+++ D ND+ P F+
Sbjct: 1832 KFRLHPTTGILYINESLDFEISHEYYLSVEGTRKSSVSLSDIAMVIINVTDINDHVPKFS 1891

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            Q  Y     E A +G +VLT       + A+DKD   N
Sbjct: 1892 QDLYVADTREDAAVGEIVLT-------VLADDKDGVMN 1922



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 8/92 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           GVL+    +DYE+   ++ +V AT+ A GA +   V V I D NDN P F+Q+ Y   VS
Sbjct: 789 GVLMVISQVDYESDTKHSFTVRATDTAVGAFSEAVVEVEIEDVNDNRPAFSQMVYIASVS 848

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E+ P  + ++        + A D+DS  N L+
Sbjct: 849 ESMPPRSPIIQ-------LFANDRDSGRNRLI 873



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            + P  G +   K LD E    Y+L V AT+  G + + S   V++ + D NDN P F QL
Sbjct: 1940 IDPQTGEIRIAKYLDREEISSYSLKVQATD-NGQEPLSSDTTVLIRVSDVNDNPPRFFQL 1998

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NY+  V E +P+G  VL      LV+   D+DS  N 
Sbjct: 1999 NYSAAVQENSPVGTSVLE-----LVL--SDRDSPENG 2028



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 16/95 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G L  +K +D+E  + Y + V A      T++    ++ S+ +H+ D NDN P F    Y
Sbjct: 1314 GALTVQKAMDHEKMKWYQIDVLAHCSHQDTDLV---SLVSINIHVKDVNDNKPVFEANPY 1370

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +V E  P G  V+        + A D+D+ ++ 
Sbjct: 1371 RAFVMENMPTGTTVIQ-------VTANDQDTGSDG 1398



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G + T + +DYEA + + + V A +  G   + S   V + +LD NDN P F+Q  Y   
Sbjct: 895 GEITTTQVIDYEANQEFYIKVRAMDH-GVPPLSSETLVAITVLDVNDNPPKFSQPQYQAN 953

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           VSE    G +V+        ++A D DS   + L+
Sbjct: 954 VSEIVSCGHVVIK-------VQAFDPDSWNTSKLE 981



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G + T K LD E    Y   V A++      + S   V V I D NDN P FT   Y G 
Sbjct: 1422 GWITTLKELDCEVQETYKFFVVASDHGRKIQLSSQTLVEVTITDENDNAPQFTSEIYKGS 1481

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDK 102
            + E A  G ++ T  ++   I  +++
Sbjct: 1482 IVENAEPGLMITTLKTIDTDISEQNR 1507



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            +L+K PL+ E T  Y L V A++    +A   V + +LD NDN+P   Q  Y   + E A
Sbjct: 1533 ILSKAPLNREDTDKYLLRVIASD-GKFQAATEVEISVLDVNDNSPECKQTPYKTKIVEDA 1591

Query: 82   PIGALVL 88
              G  VL
Sbjct: 1592 SQGFSVL 1598



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)

Query: 6   QLFAILKPALHPPYGVLLTKKP-LDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRN 62
           + F I++ +     GVL T+    D+E   +Y ++V   +      V   IV  H+ D N
Sbjct: 576 EWFRIIQSS-----GVLQTRGVVFDHEIQDMYEIAVEVKDFRNPPRVSQAIVKIHVDDIN 630

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           DN P+F  + Y   + +    G ++         + A DKDS  N ++
Sbjct: 631 DNPPHFENVPYYIAIQDGTEPGDVIFQ-------VSATDKDSGNNGVI 671



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 20   GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT--- 74
            G + T + LD E +  R+  + + A +  G  A C+V + + D NDN P F    Y    
Sbjct: 1101 GRIETLQKLDRENSTERVIAIKIMAKDAGGKVAFCTVKIILADENDNPPQFKASEYVLSV 1160

Query: 75   -GYVSEAAPI 83
               VSE +P+
Sbjct: 1161 QSNVSEGSPV 1170



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +  KKPLD++A   Y L VTA +           V ++ R+ + P F  L YT
Sbjct: 684 IDPYLGDISLKKPLDFQALNKYILRVTARDAGEPPLYAEEKVLVIVRDKSNPLFQSLFYT 743

Query: 75  GYVSEAAPI 83
             V E  P+
Sbjct: 744 VKVPENIPL 752



 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 25/54 (46%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            L P  G L T   LD E    Y L V AT+  G      +IV I D NDN P F
Sbjct: 1627 LDPHTGELNTFALLDRELKPQYQLVVKATDGGGRFCQMDLIVDIEDANDNAPRF 1680


>gi|317419390|emb|CBN81427.1| Protocadherin-15, partial [Dicentrarchus labrax]
          Length = 1994

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 13/116 (11%)

Query: 3   HPVQLFAIL--KPALHPPY-------GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AV 51
            P  L++IL  KP  +  Y         LL  KP+D E  R ++L + A    G    A 
Sbjct: 288 RPGILYSILVGKPESYAEYFSLNRTTAELLLLKPIDRELHRRFDLVIKAEQDNGHPLPAF 347

Query: 52  CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
            ++ + +LD N+  PYF + +Y GY+SEA+P+G  + TN SL  PLVI A D D E
Sbjct: 348 ANLQIEVLDENNQAPYFLETSYHGYISEASPVGTTIATNASLSAPLVIVALDNDVE 403



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 52/100 (52%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
            AL+   GV+ T KPLDYEA   Y L V A +M    +            VI+ ILD ND+
Sbjct: 1052 ALNVTTGVISTAKPLDYEANSSYVLKVEADSMRVGSSNFRAPSKTNTAKVIIDILDENDH 1111

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F++  Y G V+E A       T TS+ L ++A DKD+
Sbjct: 1112 PPVFSRSLYIGGVAEDAK------TFTSV-LQVQALDKDT 1144



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 8   FAILKPALHPPY----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
           + IL P+    Y    G +L + P  Y  + +  +  T   + G   +  V + + DRND
Sbjct: 53  WVILDPSKQALYLNSTGRVLDRDPPSYIQSIVVQVQCT-NELVGTVILHEVRIVVRDRND 111

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLT 89
           N P F Q  Y   VSE  P+G  + +
Sbjct: 112 NAPSFQQPRYYVAVSELTPVGTTIFS 137



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATR----IYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
             P  G L   K LDYEA       Y  +V A +  G     + SV V I D ND +P F
Sbjct: 838 FDPVTGELSVLKVLDYEALTDSEPTYTFTVEAMDTEGTMPLGLTSVTVRITDMNDFSPVF 897

Query: 69  TQLNYTGYVSEAAPIGALVLT 89
           +Q  Y G V+  A  G +V T
Sbjct: 898 SQSVYRGMVAPNAVKGTIVTT 918



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +PLD E    Y  ++ A++        +V + +LD NDNTP FT ++Y
Sbjct: 436 QPLDRETQDSYTFTLVASDGVQQSVPVTVKITVLDANDNTPTFTNVSY 483



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T  PLD E    Y L V A + A    ++  ++ V +LD +DN+P FTQ  Y   +
Sbjct: 738 GAIRTAVPLDREVKGHYFLIVEAWDGAVDPRRSRLTLSVTVLDVDDNSPIFTQQTYNVSL 797

Query: 78  SEAAPIGALVL 88
            E +P   ++L
Sbjct: 798 PENSPKDTVIL 808


>gi|432922377|ref|XP_004080322.1| PREDICTED: protocadherin-15-like [Oryzias latipes]
          Length = 2269

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 13/116 (11%)

Query: 3   HPVQLFAIL--KPALHPPY-------GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AV 51
            P  L++IL  KP  +  Y         LL  KP+D E  R ++L + A    G    A 
Sbjct: 343 RPGILYSILIGKPGSYAEYFSLNRTSAELLLLKPIDRELYRRFDLVIKAEQDNGHPLPAF 402

Query: 52  CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
            ++ + +LD+N+  PYF + +Y GY+SEA+P+G  + +N+SL  PLVI   D D E
Sbjct: 403 ANLQIEVLDKNNQAPYFLETSYHGYISEASPVGTTIASNSSLSAPLVIIGLDNDVE 458



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATR----IYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           +HP  G L+  + LD+EA       + L+V A +M GA    V SV V I+D ND +P F
Sbjct: 895 VHPITGELVVLRALDFEALNKSDATFTLTVEAVDMEGAMPPGVASVTVRIMDMNDFSPEF 954

Query: 69  TQLNYTGYVSEAAPIGALVLT 89
           +Q  Y G V+  A  G +V T
Sbjct: 955 SQPLYQGMVAPNAVKGTIVTT 975



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)

Query: 8   FAILKPALHPPY----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
           + IL P+    Y    G +L + P  Y  + +  +  T   + G   +  V + + DRND
Sbjct: 108 WVILDPSKQALYLNSTGRVLDRDPPSYIHSIVVQVQCT-NELIGTVILHEVRIVVRDRND 166

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           NTP+F Q  Y   +SE  P+G  + +  S
Sbjct: 167 NTPHFQQPRYYVSISELTPVGTTIFSGFS 195



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +P+D E    Y  ++ A++     A  +V V +LD NDNTP F+ ++YT
Sbjct: 491 QPVDRETQDSYTFTLLASDGVQQSAPVTVTVSVLDANDNTPTFSNVSYT 539



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            G + T K LDYE    Y L V A +    +A        V++ + D ND+ P FT+  Y 
Sbjct: 1115 GEISTAKALDYETKSTYILKVEADSSFNLRAPSKTNTAKVVIDVRDENDHPPVFTKPLYI 1174

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            G V+E A       T TS+ L ++A D+D+
Sbjct: 1175 GGVAENAK------TFTSV-LQVQALDEDT 1197



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T  PLD E    Y L V A++ A    ++  ++ V +LD +DN+P F+Q +Y   +
Sbjct: 793 GFITTAVPLDREVKGHYGLVVEASDGAVDPRRSRLTLNVTVLDVDDNSPVFSQQSYHVNL 852

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E +P   ++L        ++A D D  +N +
Sbjct: 853 PENSPKDTVILQ-------LKATDPDLNSNLM 877


>gi|348508893|ref|XP_003441987.1| PREDICTED: protocadherin-15 [Oreochromis niloticus]
          Length = 2302

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL  KP+D E  R ++L + A    G    A  S+ + +LD N+  PYF Q +Y GY+SE
Sbjct: 394 LLLLKPIDREYYRRFDLVIKAEQDNGHPLPAFASLQIEVLDENNQAPYFLQPSYHGYISE 453

Query: 80  AAPIGALVLTNTSL--PLVIRAEDKDSE 105
           A+P+G  + T+ SL  PL I A D D E
Sbjct: 454 ASPVGTTIATSASLSVPLAIIALDNDVE 481



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNM--------AGAKA-VCSVIVHILDRNDN 64
            AL+   GV+ T KPLDYE    Y L V A +M        A +K     V++ + D ND+
Sbjct: 1132 ALNETTGVIYTAKPLDYETNASYVLKVEADSMRVVSSNLRAPSKTNTAKVVIDVQDENDH 1191

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P FT+  Y G V+E A       T TS+ L ++A DKD+
Sbjct: 1192 APVFTRPLYIGGVAEDAK------TFTSV-LQVQALDKDT 1224



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           G + T  PLD E    Y L+V A + A       + +H+  LD +DN+P FTQ  Y   +
Sbjct: 816 GAITTAVPLDREVKGHYYLTVEAWDGAENPRRSRLTLHVTVLDVDDNSPIFTQQTYNVNL 875

Query: 78  SEAAPIGALVLT--------NTSLPLVIRAEDKDSETNALL 110
            E +P G ++L         N++L   IR E  D +   L 
Sbjct: 876 PENSPKGTVILQLKAIDADLNSNLTYRIRTEGSDQDITQLF 916



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 8   FAILKPALHPPY----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
           + IL P+    Y    G +L + P  Y  + +  +  T   + G   +  V + + DRND
Sbjct: 131 WVILDPSKQALYLNSTGRVLDRDPPSYIHSIVVQVQCT-NELIGTVILHEVRIVVRDRND 189

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           N P F Q  Y   V+E  P+G  + +  S
Sbjct: 190 NEPRFQQPRYYVAVNELTPVGTTIFSGFS 218



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 20  GVLLTKKPLDYEA----TRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNY 73
           G L   K LD+EA       Y  +V A +  G     + SV V I+D ND  P F+Q  Y
Sbjct: 923 GELSVLKVLDFEALAESEPTYTFTVEALDTKGNMPPGLASVTVRIMDMNDFFPVFSQSVY 982

Query: 74  TGYVSEAAPIGALVLT 89
            G V+  A  G +V T
Sbjct: 983 RGMVAPNAVKGTIVTT 998



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +P+D E    Y  ++ A++        +V + +LD NDNTP F  ++Y
Sbjct: 514 QPVDRETQDSYTFTLVASDGVQESTAVTVAITVLDANDNTPTFPNVSY 561


>gi|348519324|ref|XP_003447181.1| PREDICTED: neural-cadherin-like [Oreochromis niloticus]
          Length = 2850

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP  GV++T +  D E  R Y+++VTAT+ A      +C + + ILD+NDN+P F  L 
Sbjct: 761 IHPDTGVIVTARRFDRERQREYSITVTATDWAEEPLIGICQLTIQILDQNDNSPKFENLR 820

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y  ++ E   +G      TS  L + A D D  TNA +
Sbjct: 821 YEYFLREDTLVG------TSF-LRVAAHDDDFGTNAAI 851



 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
            PV+ +  L P        +L  +PLDYE T  ++L V A N+A     A   V V+I D 
Sbjct: 964  PVRFY--LSPNREDGSASILVSEPLDYETTPFFSLQVRAQNVAAVPLAAFTRVYVNITDV 1021

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            NDN P+FT   Y   V+E A IG  VL        + A DKD
Sbjct: 1022 NDNVPFFTSSIYEASVTEGAQIGTSVLQ-------VSAHDKD 1056



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   +PLDYE  + Y L + A++    +   +V+V ++++ND  P F+   Y 
Sbjct: 1193 IEPEVGTIFIAQPLDYEQQKRYKLLILASD-GKWEDYAAVVVTVVNKNDEAPVFSMNEYY 1251

Query: 75   GYVSE---AAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            G V+E    +P+  L +T T         DKD++  A+
Sbjct: 1252 GSVTEELDGSPVFVLQVTATD-------PDKDADQGAI 1282



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL--NYTG 75
            G +  ++ LD E   ++   V AT+  G        VI+++ D NDN P F+    N   
Sbjct: 1302 GEMYAQRTLDREERAVWRFVVMATDEEGEGLTGFTDVIINVWDINDNAPTFSCAPDNCHS 1361

Query: 76   YVSEAAPIGALVLTNTSLPL 95
             V+E +P G LV+   ++ L
Sbjct: 1362 SVAENSPPGTLVVEMMAVDL 1381



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYV 77
            GV+   +PLD E    Y L V AT+        SV V   +LD NDN P   +  Y   +
Sbjct: 1629 GVVTVARPLDRETVAGYELVVMATDRGTPPLSGSVTVRLPLLDVNDNGPEL-ETAYIPML 1687

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
             E +P+  +V  N S  L+    DKDS
Sbjct: 1688 WENSPVPQVVWLNRSSTLLY-VTDKDS 1713



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 17/101 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA----------TNMAGAKAVCSVIVHILDRNDNTPYFT 69
            G++ T+   D EA   Y L V +           N         V V I D NDN P F 
Sbjct: 1085 GIIYTEAVFDREARSSYLLEVQSEDGQESARPGKNKQPNTDTAYVRVFISDVNDNKPVFA 1144

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y   V E A +G  V+T       + A D+D   NA L
Sbjct: 1145 QRLYEVGVDENADVGLAVVT-------VSANDEDEGANAKL 1178



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 18  PYGVLLTKKPLDYEA-TRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYT 74
           P+G +   + LDYE    +Y   V A +          +V V + + ND  P F+Q  Y 
Sbjct: 547 PHGTVFPARRLDYERPNHLYEFVVMAVDSGDEPHSGTATVRVRMANVNDEAPEFSQPVYR 606

Query: 75  GYVSEAAPIGALVLT 89
            +VSE A    LV T
Sbjct: 607 TFVSEDAGPNTLVAT 621


>gi|426350311|ref|XP_004042722.1| PREDICTED: protocadherin beta-4 [Gorilla gorilla gorilla]
          Length = 795

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  ILKP L   Y  L+T++PLD E +  YN+++T T++     K   S+ V + 
Sbjct: 383 SIPDNLPFILKPTLKSFY-TLVTERPLDRETSAEYNITITVTDLGTPRLKTQQSITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           +RA D+DS TNA
Sbjct: 442 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VRATDRDSGTNA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|410908209|ref|XP_003967583.1| PREDICTED: neural-cadherin-like [Takifugu rubripes]
          Length = 2990

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP  G ++T +  D E  R Y+++VTAT+ A      +C + V ILD+NDN+P F  L 
Sbjct: 897 IHPDTGAIVTARRFDRERQREYSVTVTATDWAEEPLIGICQLTVQILDQNDNSPKFENLR 956

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y  ++ E   +G      TS  L + A D D  TNA +
Sbjct: 957 YEYFLREDTLVG------TSF-LRVAAHDDDFGTNAAI 987



 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 51/102 (50%), Gaps = 11/102 (10%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
            PV+ +  L P        +L  +PLDYE T  ++L V A N+A     A  +V V+I D 
Sbjct: 1100 PVRFY--LSPNREDGSASILVSEPLDYETTSFFSLRVRAQNVAAVPLAAFTTVYVNITDV 1157

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            NDN P+FT   Y   V+E A IG  VL        + A DKD
Sbjct: 1158 NDNVPFFTSSIYEASVTEGAQIGMSVLQ-------VSAHDKD 1192



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   +PLDYE  + + L V A++    +   +V+V ++++ND  P F+   Y 
Sbjct: 1329 IEPEVGTIFVAQPLDYEQQKRFKLLVLASD-GKWEDYAAVVVTVVNKNDEAPVFSMNEYY 1387

Query: 75   GYVSE---AAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            G V+E    +P+  L +T T         DKD++  A+
Sbjct: 1388 GSVTEELDGSPVFVLQVTATD-------PDKDADQGAI 1418



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYV 77
            G++   +PLD EA   Y L V AT+        SV VH  +LD NDN P   +  Y   +
Sbjct: 1765 GLVTVARPLDREAVAGYELVVVATDRGIPALTGSVTVHLLLLDVNDNGPEL-ESAYAPLL 1823

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E +P   +V  N S  L +   D+DS  N 
Sbjct: 1824 WENSPAPQVVWLNQSSTL-LHVVDRDSPENG 1853



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA----------TNMAGAKAVCSVIVHILDRNDN 64
            + P  G++ T+   D EA   Y L V +           N         V V I D NDN
Sbjct: 1216 IDPELGIIYTEAVFDREARSSYLLEVQSEDSQESARPGKNKQPNSDTAYVRVFISDVNDN 1275

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P F Q  Y   V E A +G  V+T       + A D+D   NA L
Sbjct: 1276 KPVFAQRLYEVGVDENADVGLAVVT-------VSATDEDEGANAKL 1314



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL--NYTG 75
            G +  ++ +D E   ++   V AT+  G        VI+++ D NDN P FT    N   
Sbjct: 1438 GEMYAQRTMDREERAVWRFVVMATDEEGEGLTGFTDVIINVWDINDNAPTFTCAPDNCHS 1497

Query: 76   YVSEAAPIGALVLTNTSLPL 95
             V+E +  G LV+  T++ L
Sbjct: 1498 SVAENSAPGMLVVEMTAVDL 1517



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 21/106 (19%)

Query: 16  HPPYGVLL--TKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYF 68
           H  +G LL  T K LD EA   Y LSV     T    +G  AV  V V +LD ND+ P F
Sbjct: 60  HHKHGNLLLKTSKVLDREARSEYLLSVALCCQTCAPESGVSAVALVKVDVLDTNDHEPTF 119

Query: 69  TQLNYTGYVSEAAPIGALVLTNT----SLPLVIRAEDKDSETNALL 110
              N             + L +T    S+   + A+D DS  NA+L
Sbjct: 120 GVANRV----------HITLNDTTALRSVIYRLEADDADSGNNAVL 155



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 18  PYGVLLTKKPLDYEA-TRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYT 74
           P+G +     LDYE    +Y   V AT+          +V V + + ND  P F+Q  Y 
Sbjct: 683 PHGTIFPAGRLDYERPNHLYEFVVMATDGGNEPHSGTTTVRVRMANINDEAPEFSQPVYR 742

Query: 75  GYVSEAAPIGALVLT 89
            +VSE A    LV T
Sbjct: 743 TFVSEDAGPNTLVAT 757


>gi|197097808|ref|NP_001126353.1| protocadherin beta-4 precursor [Pongo abelii]
 gi|55731190|emb|CAH92309.1| hypothetical protein [Pongo abelii]
          Length = 795

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
           S P  L  ILKP L   Y  L+T++PLD E +  YN+++T T++   +     S+ V + 
Sbjct: 383 SIPDSLPFILKPTLKNFY-TLVTERPLDRETSAEYNITITVTDLGTPRLRTQQSITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           +RA D+DS TNA
Sbjct: 442 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VRATDRDSGTNA 483



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIMSSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  V R  D+DS  N 
Sbjct: 358 NAP--------ETVVSVFRIRDRDSGENG 378



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|47209298|emb|CAF94673.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 3417

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++   G +     LD+E ++ Y L+V A++  G    C VI+ I+D NDN P    +++
Sbjct: 2956 AINSQTGEIKAVGKLDFEKSKTYQLNVQASDHGGYTDTCKVIIQIIDENDNVPAIQMMSF 3015

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            +  +SE +P G  V        V+  +D DSE N ++  S N
Sbjct: 3016 SHSLSEDSPPGTTV-------AVVNVDDADSERNGVVKCSIN 3050



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +    P+DYE  R Y + V A +  G      +++ ++D NDN P    ++++  +SE
Sbjct: 968  GTISVSGPIDYEKDRKYEVRVEAKDQGGLIGTSKILIDVIDVNDNPPVINLMSFSSTMSE 1027

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
             AP G  +        V   +D DS+ N  +  S N
Sbjct: 1028 DAPPGTTI-------AVFNVKDIDSDKNGQIKCSLN 1056



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRNDNTPYFTQLNYTG 75
           Y +L+T +PLD E    YN+++TA++ AG+  + SV    + + D NDN P F Q  Y  
Sbjct: 372 YYMLVTDEPLDREFQSEYNITITASD-AGSPPLASVKILTIVVSDINDNPPTFAQKEYDA 430

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  V+        I+A D D  +NA
Sbjct: 431 SILENQPVGTFVMN-------IKAVDLDGGSNA 456



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            Y  ++ +KPLD E+    +L V A +    +   +V VH+  LD NDN P F Q  Y   
Sbjct: 1740 YAEMVLQKPLDRESDPRLSLKVIAVDGGAPQRSATVDVHVTVLDGNDNAPVFNQSVYKAT 1799

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E +P    V T       + A D DS  N+++
Sbjct: 1800 VMENSPADTYVTT-------VNASDADSGANSVI 1826



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
            Y  L+T   LD E+   YN++V A++ AG  A+ +     + I D NDN P F Q  Y+ 
Sbjct: 1950 YYTLVTDALLDRESVSDYNITVIASD-AGTPALSTKKNFNIKISDVNDNAPVFPQAVYSA 2008

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV E    G  VLT       +RA+D D   NA +
Sbjct: 2009 YVVENNSPGVSVLT-------LRAKDPDENQNARI 2036



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            Y  L++ +  D E+   YN++VTAT+        S ++H++  D NDN P F +  Y+ Y
Sbjct: 1070 YYSLISDQYFDRESVPEYNITVTATDSGSPPLSASKMLHLVISDVNDNAPIFERQRYSAY 1129

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++E    GA +   T       A D D   NA +
Sbjct: 1130 ITENNSPGASIFALT-------ARDSDWNQNARI 1156



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV++ K  +DYE  + + L + A +  G    C VI+ + D NDN P  T ++++  VSE
Sbjct: 1848 GVIVIKGSVDYEKDKKHELRIDAKDQGGLTDSCKVIIEVTDVNDNAPTITVMSFSSSVSE 1907

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P G  +        +I  +D DS  N 
Sbjct: 1908 DSPPGTTI-------GIINVKDLDSGDNG 1929



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 36/73 (49%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +     +DYE T  + L V A +  G  + C +I+ ++D NDN P     + +
Sbjct: 265 IDPLTGEVRVAGLIDYEETSTHELDVQAKDGGGQASHCKLIIDVMDVNDNKPVIEIKSAS 324

Query: 75  GYVSEAAPIGALV 87
             V+E A  G +V
Sbjct: 325 ANVAEDATPGTMV 337



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+ KK LD EA   + L +   +  G+ A     S+ V +LD NDN P F+Q  Y  
Sbjct: 162 YPELVLKKALDREAQAEHVLKINGID-GGSPARTGTSSIHVRVLDANDNVPVFSQRVYKA 220

Query: 76  YVSEAAPIGALV 87
           +V E +  G ++
Sbjct: 221 FVMENSDTGTVI 232



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTP-YFTQLNYTGY 76
           G L T +  DYE +  + + VTA +    +  + C++ V I D+NDN P     +  +G+
Sbjct: 481 GALYTSRLFDYEQSVHFQMKVTAYDGGSPQLSSTCALNVFIKDQNDNAPVVLYPVQTSGF 540

Query: 77  VSE-----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V+E      AP G LV         + A D DS  NA L
Sbjct: 541 VAEDMVPFEAPRGYLVTK-------VVAVDADSGHNAWL 572



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 10  ILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDN 64
           ILK   +P    Y  ++ +KPLD E     +L + A +    +     ++ V +LD NDN
Sbjct: 848 ILKQQTNPDGSKYVEMVLQKPLDRERHPHLSLKLIAVDGGTPQRSGTVNIDVSVLDANDN 907

Query: 65  TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P F Q  Y   V E    G  V+T       + A D DS +  L+
Sbjct: 908 IPVFNQDIYKSSVIENTSKGTSVMT-------VSATDADSGSYGLI 946


>gi|410932565|ref|XP_003979664.1| PREDICTED: protocadherin gamma-A12-like, partial [Takifugu
           rubripes]
          Length = 712

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LD+E ++ Y L+V A++  G    C VI+ I+D NDN P    +++T  +SE +P G  +
Sbjct: 312 LDFEKSKTYQLNVQASDHGGYTDTCKVIIQIIDENDNIPTIQMMSFTHSISEDSPPGTTI 371

Query: 88  LTNTSLPLVIRAEDKDSETNALLDGSTN 115
                   V+  +D DSE N ++  S N
Sbjct: 372 -------AVVNVDDADSERNGVVKCSIN 392


>gi|410932303|ref|XP_003979533.1| PREDICTED: protocadherin gamma-A4-like, partial [Takifugu rubripes]
          Length = 810

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LD+E ++ Y L+V A++  G    C VI+ I+D NDN P    +++T  +SE +P G  +
Sbjct: 312 LDFEKSKTYQLNVQASDHGGYTDTCKVIIQIIDENDNIPTIQMMSFTHSISEDSPPGTTI 371

Query: 88  LTNTSLPLVIRAEDKDSETNALLDGSTN 115
                   V+  +D DSE N ++  S N
Sbjct: 372 -------AVVNVDDADSERNGVVKCSIN 392


>gi|326673285|ref|XP_002664319.2| PREDICTED: protocadherin-10-like [Danio rerio]
 gi|326673339|ref|XP_003199847.1| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 799

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ KKPLD E    YNL +TA +  +       S+IV +LD NDN P F + +YT  
Sbjct: 191 FADLILKKPLDREERASYNLILTAVDGGVPARSGTASIIVRVLDTNDNAPQFDKDSYTIN 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E APIG+LV+        + A DKD  +N+ L
Sbjct: 251 LTENAPIGSLVVK-------LNASDKDEGSNSDL 277



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +L+P  G +  K+ ++YE  RIY++ + AT+  GA ++   C V + I D NDN P  + 
Sbjct: 294 SLNPNNGEIRVKELINYEDFRIYDMEIIATD-KGANSLTGKCKVKILITDMNDNHPEISI 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 353 RSVTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 386



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 404 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 463

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 464 VMENNAPGA 472


>gi|156361307|ref|XP_001625459.1| predicted protein [Nematostella vectensis]
 gi|156212294|gb|EDO33359.1| predicted protein [Nematostella vectensis]
          Length = 814

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ + K  DYE  R+Y+ SV A +       A+ ++ V I D NDN P F  + Y   V
Sbjct: 59  GVVRSSKEFDYETQRMYSFSVRAEDRGSPIRSAIATIHVQITDTNDNRPIFQPMEYETRV 118

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE  P+G +V         ++A DKDS +NA L
Sbjct: 119 SENTPLGTIVAR-------VKAVDKDSTSNADL 144



 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 13/96 (13%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-----VIVHILDRNDNTPYFTQLNYT 74
           G ++T+K  D+E T  YNL+++ ++  G  A+ S     V++ ++D NDN P F Q  YT
Sbjct: 164 GEIMTRKEFDFEKTERYNLTISVSD-TGVPALSSLNFANVVIIVVDENDNPPEFAQKRYT 222

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E   +G +VL        + A DKDS  NA+L
Sbjct: 223 ATVYENFTVGTVVLR-------VTAHDKDSGPNAML 251



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+     LD E+   YN+ V A +       A   V V +LD NDN P FT L YT  +
Sbjct: 443 GVVSLTAELDRESVYQYNMLVVAQDGGSPPRTASAHVKVEVLDCNDNPPVFTTLYYTLQL 502

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SEA  IG  +L  ++       +DKD   NA
Sbjct: 503 SEATSIGTRILRVSAND----RDDKDEGVNA 529



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 22/124 (17%)

Query: 7   LFAIL------KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIV 56
           LF+IL      K  +    GV+ T K LDYE    Y L + AT+        S    + V
Sbjct: 637 LFSILGGNSDGKFVIDQNTGVVTTNKSLDYEDVTEYTLVIQATDCGDPPLNSSQPGMLHV 696

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLD 111
            +++ NDN+P F+Q  Y+  + E   +G ++L        + A D DS  N     ++L+
Sbjct: 697 SVVNINDNSPVFSQKMYSASIDENTTVGHVILR-------VTASDLDSSLNGKVLFSILE 749

Query: 112 GSTN 115
           G+++
Sbjct: 750 GNSD 753



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFT 69
           K +++   G +  K+ +DYE    Y+  V A++   A+     SV + I+D NDN PYF 
Sbjct: 543 KFSINDTTGQITIKQAVDYEERSSYSFEVFASDGGEARLTGSSSVRITIIDVNDNRPYFL 602

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              Y   + E   IG  V         + A D DS  N 
Sbjct: 603 PTRYYVQLVENVAIGTPVTQ-------VTASDLDSSLNG 634


>gi|402592929|gb|EJW86856.1| hypothetical protein WUBG_02233 [Wuchereria bancrofti]
          Length = 2355

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T  P D+E   +Y     A  + G    C + +HI+D+NDN P F   NY   V E
Sbjct: 158 GIISTTAPFDFEKENLYQFEAIAHRIEGTSVGCHIFLHIIDKNDNAPKFKSNNYEVKVYE 217

Query: 80  AAPIGALVL 88
            AP+G +++
Sbjct: 218 DAPVGEMII 226



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A+    G +LT + +D+E +  Y   +TAT+       A   V V +LD NDN P F   
Sbjct: 1385 AIDATTGTILTTEHVDFEESSNYQFLITATDSGFPALSATAEVTVEVLDENDNAPEFEN- 1443

Query: 72   NYTGY-VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y  Y +S  +P+G  +           A D DS++NA++
Sbjct: 1444 RYVQYTISAYSPVGTTIAH-------FSAVDVDSKSNAVV 1476



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y+L V A +    +    V+V I  LD+NDN+P F+ L + G V
Sbjct: 997  GEIFTTCGLDAEQLNEYHLHVIAKDHGNPQLSEMVVVKIEVLDKNDNSPRFSNL-FHGAV 1055

Query: 78   SEAAPIGALVLTNT 91
            +E + +G L+L  T
Sbjct: 1056 AENSRLGTLILQVT 1069



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLN 72
           L+P  G L T   +DYE  + Y L + A +      +   + +V+++D NDN P F +  
Sbjct: 885 LNPNSGELYTTNRIDYEYRKQYELWIAAIDQHIQPMISYTNCVVNVVDINDNRPSFEKAF 944

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+  V+E      L++        + A D DS  N 
Sbjct: 945 YSASVAENGDSDELIVK-------VAARDSDSGMNG 973



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNY 73
           P  G L    PL+YE    Y L V A ++        + +V V ++D NDN P F    Y
Sbjct: 568 PQTGKLQITGPLNYEVQNRYELVVQANDLTVPRNFNTMSTVTVLVMDVNDNVPVFECPQY 627

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V E  P    V  N +L L ++A DKD    +++
Sbjct: 628 YVEVMENEP----VEENLTL-LCLKATDKDDREFSMI 659


>gi|345548553|gb|AEO12553.1| Lefftyrin, partial [Oscarella carmela]
          Length = 14757

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN---MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L     LD E T  Y L+VTATN     G  +   VIVHILD NDNTP   + NY   
Sbjct: 1367 GELTVGNSLDREKTSSYRLTVTATNSFATFGRSSSADVIVHILDVNDNTPQLEKANYEAS 1426

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E +P G  VLT       ++A D D  +N 
Sbjct: 1427 VVENSPTGTSVLT-------VKATDDDIGSNG 1451



 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+   GV+ T + LD E   IYNL+V AT+ A +  V ++I  + D NDN P F + +Y 
Sbjct: 8722 LNSTSGVVTTARALDRETKAIYNLTVIATDGARSAEVTAIIT-VQDDNDNAPEFAK-SYR 8779

Query: 75   GYVSEAAPIGALVLT 89
              VSE+AP+G +VLT
Sbjct: 8780 ANVSESAPVGTVVLT 8794



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  GVL TK  LD E+T  Y+L V A ++      +  SV + + D ND+ P F+Q  
Sbjct: 2592 VNPGTGVLSTKGTLDRESTSQYDLIVEAFDLGVPSRSSNSSVRIMVEDVNDSPPTFSQFL 2651

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   +SEAAP GA V        ++ A D D+ +NA+ 
Sbjct: 2652 YVATISEAAPAGADV-------QIVEAIDGDAGSNAVF 2682



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            +G L T K LD E    YNL+V A +    +     +V   +LD NDN P FTQ  + G 
Sbjct: 8516 FGDLSTLKTLDRETQASYNLTVLAVDSGSPRLTGTATVAAILLDVNDNAPTFTQSVFVGR 8575

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E A +G+ V       L++ A D+D+  NA
Sbjct: 8576 VEENATLGSSV-------LLLSATDRDTGLNA 8600



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            L P  G L     +D EA     L V+A +    +  +  +V+V+I D NDN P FT+  
Sbjct: 3978 LDPITGSLTVGGSIDREAFDTITLVVSAVDAGIPRLHSTTTVVVNITDVNDNAPEFTRRT 4037

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  + E + +G  VL+       ++AED DS  N L+
Sbjct: 4038 YSASILENSTVGQFVLS-------VQAEDVDSGANGLV 4068



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFT 69
            K  ++   G +   +PLD E    Y+L + A++  +       ++ V + D ND  P FT
Sbjct: 6143 KFGVNASTGQVTLLEPLDRENRSQYSLKIQASDGGLPSLSGEITIFVTVTDVNDEAPLFT 6202

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +Y   ++E A +G LV T       +RA D D  TN L+
Sbjct: 6203 EASYLASIAENASVGDLVFT-------VRANDADEGTNGLV 6236



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL     LD E   +Y+L+V A +       A     V + D NDNTP F++  Y   V
Sbjct: 1471 GVLEVTGSLDREKQSVYSLNVIAVDGGDPSRTATARATVTVADANDNTPRFSRSLYAAGV 1530

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE+  +G+ V      P+ + A D D+  N  L
Sbjct: 1531 SESVAVGSTV------PVTVSATDADAGANGQL 1557



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y+L+VTA +      + SV   V +LD NDN P F++  Y G VSEAA  G 
Sbjct: 2502 LDRELKTRYSLTVTARDRGSPALLTSVGVTVDVLDINDNAPVFSKQRYVGNVSEAASKGT 2561

Query: 86   LVLTNTSLPL 95
             +L  T+  L
Sbjct: 2562 AILGLTATDL 2571



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  ++ +DYE+   Y+L ++A++       +  +V V +LD NDN P F    +T  V
Sbjct: 4926 GHITLQRAVDYESVTNYSLIISASDGGSPTLSSTAAVSVRVLDTNDNPPVFVGGPFTVKV 4985

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P+   V T       + AED DS  NA L
Sbjct: 4986 RENTPVSTSVFT-------VSAEDADSGINADL 5011



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L T + LDYE  + Y+L V   +    +     +V V +LD NDN P F        V
Sbjct: 1158 GLLKTARNLDYERRQTYHLVVQVEDFGFPQHSGTAAVTVEVLDENDNAPVFNTTTVFADV 1217

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E    G +V T       ++A D+DS +N 
Sbjct: 1218 PENVATGTVVET-------LKATDRDSGSNG 1241



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGA-KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  +K +DYE   +Y++ V A +  + G+ ++  +V++ + D+NDNTP         +
Sbjct: 8202 GNLTLRKSVDYEMRTLYSIVVEAKDGSLHGSLQSTATVVITVEDKNDNTPQIETSQDVLF 8261

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
              E +P+G ++         I+A+D+DS  N  L+
Sbjct: 8262 FPENSPVGPVLAE-------IKAQDRDSGKNGKLN 8289



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 12/101 (11%)

Query: 15    LHPPYGVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFT 69
             +H   G ++  + LD E    Y+  + AT+        A +     V +LD NDN P F 
Sbjct: 10158 IHQLTGDVIVNEKLDRETVDKYSYEIEATSFDPIVDQVASSFAKFTVTVLDVNDNKPLFE 10217

Query: 70    QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Q  Y   VSE   +G+ V T +       A D D   NA++
Sbjct: 10218 QSGYNVSVSEDVDVGSTVFTAS-------AADNDEGRNAIV 10251



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
            GV+     LD EA  +YNL+V A+ + G+     ++  +V V +LD ND++P F+   Y 
Sbjct: 4191 GVIFLLAMLDREAVDLYNLTVAAS-IPGSDGRFLRSSAAVTVVVLDVNDHSPIFSDFLYK 4249

Query: 75   GYVSEAAPIGALV 87
              VSE A +G+ V
Sbjct: 4250 FLVSEDASVGSSV 4262



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTG 75
            GV+     LD+E    Y L +TA N + + ++     +V + +LD NDN P F Q+ Y  
Sbjct: 8412 GVITLAAALDFERVENYQLVITARNPSSSSSILPRSATVNIAVLDVNDNAPIFDQMFYRW 8471

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E   IG    +       ++A D DS  N+L+
Sbjct: 8472 EILENVTIGKAGFS-------VQATDADSGINSLI 8499



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L+    LD E    YNL++ A +  G      V + + D NDN P F +  Y   V+E
Sbjct: 3878 GNLVLNSSLDREVVDFYNLTILAVDEVGNTGTALVQITVEDINDNPPVFERDIYRFSVAE 3937

Query: 80   AAPIGALVLTNTSLPLVIRAED-KDSETNALL 110
             +  G  V        V+RA+D KD+ +NA +
Sbjct: 3938 GSGTGLQV-------GVVRAKDAKDAGSNARI 3962



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQ 70
            A++   G L   + LD E T  Y   + AT++       A   V + + D NDN P F +
Sbjct: 6567 AVNRSTGALTVVRSLDRERTDQYRFRIKATDLGSPPSLPAYAFVNLTVEDVNDNPPVFDR 6626

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +Y   ++E   +G++V +       + A D DS +N ++
Sbjct: 6627 SSYQTRITEGTDVGSIVAS-------VSASDADSGSNGIV 6659



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G++  K  LD E    Y+L+V A +        + +V+I   D NDN P F +L Y+  V
Sbjct: 3676 GIVSVKGDLDREIIEGYSLTVEARDQGSPSLRNTTLVNITVADINDNFPEFARLAYSEAV 3735

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E   IG+ + T       + AED D+ +N 
Sbjct: 3736 KENISIGSTITT-------LSAEDLDAGSNG 3759



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G +     L+ E T  Y L+V A +  G+ A+     + V++LD NDN P F Q  Y   
Sbjct: 4614 GRISVSNSLNREETGFYRLTVAAID-GGSPALTGNSIIAVNVLDVNDNDPRFQQAKYVFN 4672

Query: 77   VSEAAPIGAL 86
            VSE A IG++
Sbjct: 4673 VSEDALIGSV 4682



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G +   KPLD EA   Y L++ A++ A    + S   V + +LD NDN P F   +    
Sbjct: 6256 GQIAVLKPLDREAVNSYVLTILASDFASVNPMSSSATVSIQVLDSNDNAPVFATKSQRVD 6315

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E   +G LV        ++ A D+D   N ++
Sbjct: 6316 LFENVTVGTLV-------ALVNATDRDLGLNGVV 6342



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEAT-RIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            G LL+    DYE + R+++L+V A++ +GA  + S +   V I+D NDN+P F    +T 
Sbjct: 6467 GELLSNATFDYELSPRLHSLTVVASD-SGAPPLSSSVTVNVSIVDLNDNSPRFETNAFTV 6525

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E+  +       TS+   ++A D DS  N 
Sbjct: 6526 DVKESVSL-------TSVIASVKATDSDSGLNG 6551



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 20    GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
             GV+  K  LD E    Y+L +  ++      +A   V+V ILD ++ +  F + NY+  V
Sbjct: 10369 GVVTVKGQLDAEIRTRYDLRINVSDSGNRSFEASVDVVVKILDEDEFSLKFDKSNYSALV 10428

Query: 78    SEAAPIGALVL 88
              E A IG  VL
Sbjct: 10429 YENATIGEFVL 10439



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 12/88 (13%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAV-----CSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
            LD E T  YN++V A + A +  +      SV+V +LD NDN P F +  YT  VSE+  
Sbjct: 954  LDRETTGEYNMTVFARDDAASAELRQSSSASVVVQVLDINDNAPLFQKAVYTATVSESFS 1013

Query: 83   IGALVLTNTSLPLVIRAEDKDSETNALL 110
            +G  V+        ++A D D+  NAL+
Sbjct: 1014 VGTSVVQ-------VKATDLDTGLNALV 1034



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GVL TK  LD E    Y+L VT T+     AV ++ V + D NDN+P F   +Y   +SE
Sbjct: 5940 GVLRTKDLLDREVKDSYSLPVTVTDGL-FSAVSNLTVVVDDVNDNSPQFNASSYFASLSE 5998

Query: 80   AAPIGALVLT 89
                   V+T
Sbjct: 5999 GGGANRPVIT 6008



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A+    G++ T   LDYE  R + L V A +  G  A   ++V++ +  D  P F   +Y
Sbjct: 4398 AVDAVSGIVTTTASLDYEMKRKFVLIVEAIDGGGMNATARIVVNVTNVVDTVPIFEITSY 4457

Query: 74   TGYVSEAAPIGALVLT 89
            T  VSE A +G +V T
Sbjct: 4458 TATVSEDADVGDVVAT 4473



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 12/67 (17%)

Query: 54   VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA----- 108
            V V +LD NDN+P F Q  Y   VSE A  G +V        ++ A D DS +NA     
Sbjct: 3607 VTVTLLDVNDNSPVFNQSAYISAVSENALPGRIV-------TIVAASDADSGSNAKLTFR 3659

Query: 109  LLDGSTN 115
            ++DG  N
Sbjct: 3660 IIDGDRN 3666



 Score = 37.7 bits (86), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G L+T K LD+E    Y L+V A +        SV+V I  +D +D  P F+Q  +   V
Sbjct: 3780 GSLVTVKSLDHETKISYQLTVFAVDGGRPPLNSSVLVAITVIDVDDRAPQFSQGQFDISV 3839

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE   +G+ + +       +RA D DS
Sbjct: 3840 SENVSVGSTLAS-------VRALDPDS 3859



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTG 75
            G ++    LDYE    + L V A +  G   V S    V V IL+ NDN P FT      
Sbjct: 6043 GEIVAVGDLDYEDRTNFTLFVEARD--GGSPVRSSTVPVYVSILNVNDNRPQFTPATLNV 6100

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +SEAA  G+ + T       + A D DS  NA+L
Sbjct: 6101 KISEAAVPGSQITT-------VSASDADSGDNAVL 6128



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 19/113 (16%)

Query: 6    QLFAILKPALHPPY------GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVH 57
            Q+F  L      P+      GV+   +P  +D E   +YN +V A +    +    VIV 
Sbjct: 9007 QVFYSLGTGSAVPFTINSSTGVISVARPSDIDMETNPLYNFTVVAIDAGIPQKSGEVIVR 9066

Query: 58   IL--DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +   D NDN P FT+L Y+  V+          ++TSL + + A D DS  N 
Sbjct: 9067 VTVTDVNDNAPVFTKLFYSAVVNGT--------SDTSL-VRVSASDADSGLNG 9110



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   + LD E+   Y L V A +      ++  S+ V++LD NDN P F+    + ++
Sbjct: 6362 GALTVAQTLDRESKAEYQLEVLAEDQGIPSLQSTASITVNVLDVNDNAPRFSVPPGSLFL 6421

Query: 78   SEAAPIGA 85
            +E  P+G+
Sbjct: 6422 NENEPVGS 6429



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTGY 76
            G L   + LD E  + Y+L+V  ++ +G  ++ S  V   ++ D +DN P F Q  Y   
Sbjct: 8308 GQLSIVRSLDRETKKNYDLTVAVSD-SGVPSLSSTTVLKINVTDIDDNIPVFNQTIYNAS 8366

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             SE A +G  ++T       + A D D   NA
Sbjct: 8367 ASEDAGLGNSIVT-------VSATDGDRGVNA 8391



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 14    ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
             AL+   G L     LD E    +N++V A         A  ++ V ++D NDN P F   
Sbjct: 10467 ALNSKTGALTVNGSLDREKQDSFNVTVIAKEDKRPSVMANTTIEVALIDVNDNKPRFAVS 10526

Query: 72    NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               T  +SE   +GA ++        + A D DS  N ++
Sbjct: 10527 MVTKTISETMSVGAEIVQ-------VPATDADSGANGIV 10558



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
             ++   G++     LD+E    Y+L++ A +    K + S +   V + D ND+ P F+ 
Sbjct: 1048 GINSSNGLVTVAASLDFETRPAYSLTIEAVDGNSVKPLSSTVTLNVAVTDSNDHAPSFSA 1107

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y   ++E+A +G  VL        + A D D  TN  +
Sbjct: 1108 NVYRAVLNESAGVGFSVLQ-------LTASDPDVGTNGQI 1140



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC-----SVIVHILDRNDNTPYF 68
           +++   G L     LD EA   Y L+VT  ++     V       VIV + D NDN P F
Sbjct: 832 SINSTTGRLYLTTALDREAKSTYLLTVTVKDVGDNPTVSDLASVQVIVFVADVNDNPPVF 891

Query: 69  T-QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                Y   V E   +G  V+        + A+D+DS  N 
Sbjct: 892 VPDGQYVASVGEDLAVGRTVIQ-------VTAKDRDSGRNG 925



 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+     +D E    +   VTA+ +AG       +V V I D NDNTP    L  T +V
Sbjct: 9541 GVISVSGDIDRELNSSFTFVVTASTIAGNVPPGSATVTVTIADINDNTPQVDPLT-TAFV 9599

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               A +G+ +       +VI+A D D+  N  L
Sbjct: 9600 PFNATVGSHI-------VVIQATDPDAGVNGKL 9625



 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   + LD+E   ++NL++ A  + +    A  ++ + I + N++ P F+Q  Y   +
Sbjct: 4299 GIIEVARQLDHENVSVFNLTIEADDSGLPSLTATAALTIQIGNVNEHAPVFSQPEYEVSI 4358

Query: 78   SEAAPIGALVL 88
             E A +G  ++
Sbjct: 4359 YETAGLGTSIV 4369


>gi|126330664|ref|XP_001369066.1| PREDICTED: protocadherin Fat 4 [Monodelphis domestica]
          Length = 4980

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L+  KPLDYE  + + ++++AT+       + CS+I+++LD NDN+P F   
Sbjct: 3138 AINASTGALILAKPLDYELHQKHEMTISATDGGWVARTSYCSIIINVLDVNDNSPVFVPE 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y+  V E AP G  V+        + A D DS +NA++
Sbjct: 3198 EYSPTVLENAPSGTTVMR-------LNATDADSGSNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1362 SISPNTGGIFLAKKLDFETQPLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPTFPPG 1421

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    ++E  PIG+ V++       + A D D++ N  L
Sbjct: 1422 DIFKSITENLPIGSSVIS-------VTAHDPDADINGQL 1453



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+  A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1889 LNPVTGVFNLTRSLDYETQQYYILTAHAEDGGGQFMTIRVYFNILDVNDNPPVFSLTSYS 1948

Query: 75   GYVSEAAPIGALVL 88
              + E  P+G+ +L
Sbjct: 1949 TSLMENLPLGSTIL 1962



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            ++H   G + + + LD E    Y L+V A++          +VI+++LD NDN P F+Q+
Sbjct: 2717 SIHHSTGEIKSIRSLDREKVSQYVLTVRASDKGTPSQSTTVTVIINVLDENDNAPRFSQI 2776

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
             +T  V E AP+G  V   T+        D+D   NA+
Sbjct: 2777 -FTAPVPENAPLGYTVTRVTT-------SDEDVGVNAI 2806



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V A ++      ++  V V +LD NDN+P F  + 
Sbjct: 632 LDPVSGRLSTISSLDREEQAFYSLLVLAVDLGSPAQSSLTRVNVSLLDVNDNSPVFYPVQ 691

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D DS  N 
Sbjct: 692 YFAHIQENEPAGSYITT-------VSASDPDSGPNG 720



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLDYEA R Y+L++ A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDYEARRQYSLTLQAHDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRFASVDENAQVGTVV 377



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 28  LDYEATRIYNLSVTATNMAGA-------KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           LD E    YNL+V+ ++  GA        +V S+++ + D ND+ P F+QL Y   +SE 
Sbjct: 426 LDRERIPSYNLTVSVSDNHGATPGAVARSSVASLVIFVNDINDHPPVFSQLVYRVNLSEE 485

Query: 81  APIGALVLTNTSLPLVIRAEDKDSETNALL 110
           AP G+ V         + A D DS  NA L
Sbjct: 486 APPGSYVSG-------VSATDGDSGLNANL 508



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD+EAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1271 LDHEATSSYSLLIQAVDSGAVSLNSTCTLSIDILDENDNTPSFPKSTLFVDVLENMRIGE 1330

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
            LV +       + A D DS  NA
Sbjct: 1331 LVTS-------VTATDSDSGDNA 1346



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E      L +TAT+ +G+ A+    +V V + D NDN P F    Y+  
Sbjct: 2312 GELKVIQSLDRETKEKCILLITATD-SGSPALTGTGTVNVIVDDVNDNIPTFAHKMYSAT 2370

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +SE AP G+ V       L++ A D D+ TNA++
Sbjct: 2371 ISEDAPTGSDV-------LLVNASDADASTNAVI 2397



 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 26   KPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +PLD   T  Y + + A++    +   S I  V I D NDN P F QL+Y   +SEA P+
Sbjct: 951  RPLDVH-TGSYQVEILASDRGVPQLSSSFILTVSIHDVNDNPPVFDQLSYEVTLSEAQPV 1009

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
             +L          ++A D+DS  N 
Sbjct: 1010 NSLFFK-------VQASDQDSGANG 1027



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD EAT  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREATAQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 RSSHYQAGVPEDAVVGSSVLQ-------VTAADADEGTNA 283



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T+  LDYE  + Y+L+V A N+   +  +  +V +H+   N+  P F    
Sbjct: 3243 IDPNSGIITTQGFLDYETKQSYHLTVKAFNVPDEERCSFATVNIHLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAA  G++V
Sbjct: 3303 YYFEISEAASKGSVV 3317



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NY  
Sbjct: 1046 PDGQLYVKSELDRELQDRYVLVVVASDRAVEPLSATVNVTVVLEDVNDNRPLFNSTNYVF 1105

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            Y  E    G+ V        +I A DKD
Sbjct: 1106 YFEEEQEGGSFV-------GMINAIDKD 1126



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F + +Y
Sbjct: 2819 SINPSTGDIIISRPLNREDTDRYRIRVSAHD-SGWTVSTDVAIFVTDVNDNAPRFKKPSY 2877

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                 E   IGA V         + A D D  +N 
Sbjct: 2878 YLDCPELTEIGAKVAQ-------VSATDPDEGSNG 2905



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL  ++ LD E+   YNL +   +M     +   +   V + +LD NDN P F     T
Sbjct: 1996 GVLKVRQTLDRESQSFYNLVIQVHDMPLPSASSYTSTAQVSIILLDVNDNAPTFISPKLT 2055

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             YV E  P   +V          +A D+DS  N+ ++
Sbjct: 2056 -YVPENTPTDTVVFK-------AQATDRDSGPNSYIE 2084



 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 16/96 (16%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LD E    Y L++ AT+  G  A+ S   V V ILD NDN P F Q  Y   + E     
Sbjct: 2110 LDREEVSNYTLTIVATD-KGQPALSSSTEVAVIILDINDNNPIFAQALYKVEIDEN---- 2164

Query: 85   ALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
               LT T + + + A D D  TN     +LL G+ N
Sbjct: 2165 --TLTGTDI-VQVYAADGDEGTNGQVRYSLLRGNEN 2197



 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 24  TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSEAA 81
           T+  LD E    Y L V AT+    ++    IV I  LD  DN P F+Q  Y+  V E  
Sbjct: 745 TRMVLDREEKTAYQLQVVATDGGHLQSPNQAIVTITVLDTQDNPPVFSQATYSFVVFENV 804

Query: 82  PIGALVLT--------NTSLPLVIRAEDK 102
            +G  V +        NT++  VI   D+
Sbjct: 805 ALGYHVGSVSASTMDLNTNITYVITTGDQ 833


>gi|326673343|ref|XP_003199849.1| PREDICTED: protocadherin alpha-C2-like [Danio rerio]
          Length = 802

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ KK LD E   I+NL +TA +  +       S+IV +LD NDN P F + +YT  
Sbjct: 187 FADLILKKSLDREEQAIHNLILTAVDGGVPARSGTASIIVRVLDTNDNAPQFDKDSYTIN 246

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E APIG+LV+        + A DKD  TN+ L
Sbjct: 247 LTENAPIGSLVVK-------LNASDKDEGTNSDL 273



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +L+P  G +  K+ ++YE  RIY++ + AT+  GA ++   C V + I D NDN P  + 
Sbjct: 290 SLNPNNGEIRVKELINYEDFRIYDMEIIATD-KGANSLTGKCKVKILITDMNDNHPEISI 348

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 349 RSVTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 382



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 400 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 459

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 460 VMENNAPGA 468


>gi|345327140|ref|XP_001505705.2| PREDICTED: protocadherin Fat 4 [Ornithorhynchus anatinus]
          Length = 1703

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A++   GVL     LDYE  R + ++V+AT+   A     C+V V +LD NDN P F   
Sbjct: 816 AVNASTGVLTLAGALDYETGRSHEVTVSATDGGWAARTGFCAVTVDVLDVNDNPPVFAGA 875

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YT  V+E AP G  V+T       +RA D DS  NA++
Sbjct: 876 EYTPEVAENAPSGTPVVT-------LRATDADSGPNAVV 907



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 10/98 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+H   G + + +PLD E+   Y L+V A++       A   V+V++LD ND++P F+QL
Sbjct: 397 AIHRATGEIRSTRPLDRESVPRYRLTVRASDRGDPPRSATARVVVNVLDENDHSPRFSQL 456

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            ++  V E AP+G  V   T+        D+D   NA+
Sbjct: 457 -FSASVPENAPVGFTVTRATT-------SDEDEGQNAV 486



 Score = 41.6 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
           A+ P  GV+ T+  LDYE  R + L+V A N+   +  A  +V V +   N+  P F   
Sbjct: 920 AVDPNTGVVSTQGFLDYETRREHRLTVKAFNVPDEERCAFAAVTVRVTGVNEYIPRFVSA 979

Query: 72  NYTGYVSEAAPIGALV 87
            Y   VSEAAP G  V
Sbjct: 980 AYGFEVSEAAPPGTPV 995



 Score = 40.8 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
           +++P  G ++T  PLD E    Y L V A +     A+ S   V+V + D NDN P F  
Sbjct: 89  SINPSTGQIITSGPLDRETQANYTLIVVARDGGDPLALSSSATVLVSVADVNDNPPRFQH 148

Query: 71  LNYTGYVSEAAPIGALVLTNT 91
             Y  +V   A  G  V   T
Sbjct: 149 HPYVTHVPSPAAAGLFVFAVT 169



 Score = 40.0 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 15/98 (15%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIVHILDRNDNTPYFT 69
            ++HP  G +    PLD E   +YNL+V    T T  A  +AV  ++V + D NDN P  T
Sbjct: 1131 SVHPQTGQVTVTAPLDRETLPVYNLTVLAVDTGTPPATGRAV--LLVTLEDVNDNGPVLT 1188

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
                   V+E  P G +V T       +RA D D   N
Sbjct: 1189 VGE--ARVAENQPPGTVVTT-------LRASDPDLPPN 1217



 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 53  SVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +VIV + D NDNTP F +  +T  +SE AP G  V       L+    D D+ +NAL+
Sbjct: 27  TVIVTVEDENDNTPTFARSLFTASISEDAPAGTDV-------LLANCSDADASSNALV 77



 Score = 35.0 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A+ P  G +   +PLD E    Y + V+A + +G      V V + D NDN P F + +Y
Sbjct: 499 AIDPSTGDITVSRPLDREDVARYRIRVSAHD-SGWTVSTDVAVAVTDVNDNAPRFREPSY 557

Query: 74  TGYVSEAAPIGALV 87
                E   +G+ V
Sbjct: 558 FLECPELPEVGSGV 571


>gi|432864259|ref|XP_004070252.1| PREDICTED: neural-cadherin-like [Oryzias latipes]
          Length = 3342

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            ++P  GV++T +  D E  R Y+++VTAT+ A      +C + V ILD+NDN+P F  L 
Sbjct: 1509 IYPDTGVIVTARRFDRERQREYSITVTATDWAEEPLIGICQLTVQILDQNDNSPKFENLR 1568

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y  ++ E   +G      TS  L + A D D  +NA +
Sbjct: 1569 YEYFLREDTLVG------TSF-LRVAAHDDDFGSNAAI 1599



 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 11/102 (10%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
            PV+ +  L P        +L  +PLDYE T  ++L V A N+A     A   V V+I D 
Sbjct: 1712 PVRFY--LSPNREDGSASILVSEPLDYETTAFFSLQVRAQNVAAVPLAAFTRVYVNITDV 1769

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            NDN P+FT   Y   V+E A +G  VL        + A DKD
Sbjct: 1770 NDNVPFFTSSIYEASVTEGAQVGTSVLQ-------VSAHDKD 1804



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 11/98 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   +PLDYE  + Y L V A++    +   +V+V ++++ND  P F+   Y 
Sbjct: 1941 IEPEVGTIFIAQPLDYEQQKRYKLLVLASD-GKWEDYAAVVVTVVNKNDEAPVFSMSEYY 1999

Query: 75   GYVSE---AAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            G V E    +P+  L +T +         DKD++  A+
Sbjct: 2000 GSVIEELDGSPVFVLQVTASD-------PDKDADQGAI 2030



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA----------TNMAGAKAVCSVIVHILDRNDN 64
            + P YGV+ T+   D EA   Y L V +           N         V V I D NDN
Sbjct: 1828 IDPKYGVIFTEAVFDREARSSYLLEVQSEDGEESARPGKNKQPNTDTAYVRVFISDVNDN 1887

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P F Q  Y   V E A +G  V+T       + A D+D   N  L
Sbjct: 1888 KPVFAQRLYEVGVDEDADVGLAVVT-------VSASDEDEGANTKL 1926



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYV 77
            GV+   KPLD E    Y L V AT+        SV VH  +LD NDN P   +  YT  +
Sbjct: 2377 GVVAVAKPLDRETVAGYELVVMATDRGMPALTGSVTVHLPLLDLNDNGPEL-EAAYTPVL 2435

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
             E  P   +V  N S  L +   D+DS
Sbjct: 2436 WENGPAPQVVWLNRSSTL-LHVVDRDS 2461



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL--NYTG 75
            G +  ++ +D E   ++   V AT+  G        VI+ + D NDN+P F     N   
Sbjct: 2050 GEMYAQRTMDREERAVWRFVVMATDEEGEGLTGFTDVIISVWDINDNSPTFLCAPDNCNT 2109

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V+E +P G  V+  T+    + A+D     NA+L
Sbjct: 2110 NVAENSPPGTFVMEMTA----VDADDAAVGQNAIL 2140



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 18   PYGVLLTKKPLDYEA-TRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYT 74
            P+G +   + LD+E    +Y   V A +          +V V I + ND  P F+Q  Y 
Sbjct: 1295 PHGTIFPARRLDFERPNHLYEFVVMAVDGGDEPHSGTATVRVRIANVNDEAPEFSQPVYR 1354

Query: 75   GYVSEAAPIGALVLT 89
             +VSE A    LV T
Sbjct: 1355 TFVSEDAGPNTLVAT 1369


>gi|432864003|ref|XP_004070229.1| PREDICTED: cadherin-13-like [Oryzias latipes]
          Length = 719

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +   +PLD EA   Y L V+ T++AG  A+    +++ ++D+NDN P F +  YTG V
Sbjct: 199 GEVSVSRPLDREAIDAYMLEVSTTDLAGNIAEGPVMLVITVIDQNDNRPIFKEAQYTGEV 258

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E +P G  V+T T+      A+D  ++  AL
Sbjct: 259 LEGSPTGTTVMTMTAF----DADDPGTDNAAL 286


>gi|326673283|ref|XP_003199821.1| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 804

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ KKPLD E    +NL +TA +  +       S+IV +LD NDN P F + +YT  ++E
Sbjct: 195 LIMKKPLDREEQASHNLILTAVDGGVPARSGTASIIVRVLDTNDNAPQFDKDSYTINLTE 254

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            APIG+LV+        + A DKD  TN+
Sbjct: 255 NAPIGSLVVK-------LNATDKDEGTNS 276



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +L+P  G +  K+ ++YE  RIY++ + AT+  GA ++   C V + I D NDN P  + 
Sbjct: 295 SLNPNNGEIRVKELINYEDFRIYDMEIIATD-KGANSLTGKCKVKILITDMNDNHPEISI 353

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 354 RSVTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 387



 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 405 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 464

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 465 VMENNAPGA 473


>gi|170590870|ref|XP_001900194.1| Cadherin domain containing protein [Brugia malayi]
 gi|158592344|gb|EDP30944.1| Cadherin domain containing protein [Brugia malayi]
          Length = 2088

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T  P D+E   +Y     A  + GA   C + ++I+D+NDN P F   NY   V E
Sbjct: 158 GIISTTAPFDFEKESLYQFEAIAHRIGGASVGCQIFLYIIDKNDNAPKFKSNNYEVKVYE 217

Query: 80  AAPIGALV 87
            AP+G ++
Sbjct: 218 DAPVGEVI 225



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A+    G +LT + +D+E +  Y   +TA +       A   V V +LD NDN P F   
Sbjct: 1373 AIDATTGTILTTEYVDFEESSNYQFLITAKDSGFPALSATAEVTVEVLDENDNAPEFEN- 1431

Query: 72   NYTGY-VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y  Y +S  +P+G  +           A D DSE+NA++
Sbjct: 1432 RYVQYTISAYSPVGTTIAH-------FSAVDVDSESNAVV 1464



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y+L V A +    +    V+V I  LDRNDN P F+ L + G V
Sbjct: 985  GEIFTTSSLDAEELNEYHLHVIAKDHGNPQLSEMVVVKIEVLDRNDNAPRFSNL-FHGAV 1043

Query: 78   SEAAPIGALVL 88
            +E + +G L+L
Sbjct: 1044 AENSRLGTLIL 1054



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLN 72
           L+P  G L     +DYE  + Y L + A +      +   + +V+++D NDN P+F +  
Sbjct: 873 LNPNSGELYATNRIDYEYRKQYELWIAAIDQHIQPMISYTNCVVNVVDINDNRPFFEKAF 932

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+  V+E      L++        + A D DS  N 
Sbjct: 933 YSASVAENGDSDELIIK-------VTARDSDSGMNG 961



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNY 73
           P  G L    PL+YE    Y L V A ++   ++   + +V V ++D NDN P F    Y
Sbjct: 568 PQTGKLQITGPLNYEMQNRYELVVQANDLTVPRSFNTISTVTVLVMDVNDNVPIFEYPQY 627

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V E  P+      N +L L ++A DKD    +++
Sbjct: 628 YVEVMENEPVEE----NLTL-LCLKATDKDDREFSMI 659


>gi|332234720|ref|XP_003266553.1| PREDICTED: protocadherin beta-4 [Nomascus leucogenys]
          Length = 795

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  ILKP L   Y  L+T++PLD E +  YN+++T T++     K   ++ V + 
Sbjct: 383 SIPDNLPFILKPTLKNFY-TLVTERPLDRETSAEYNITITVTDLGTPRLKTQQTITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           ++A D+DS TNA
Sbjct: 442 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VKATDRDSGTNA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKQLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSAENG 378



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPIGALVL 88
           V E +P+ + ++
Sbjct: 250 VLENSPLDSPII 261



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601


>gi|327270415|ref|XP_003219985.1| PREDICTED: protocadherin gamma-A6-like [Anolis carolinensis]
          Length = 793

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLN 72
           +H  +  L+T+K LD E   IYN++VTA +        S I+   +LD NDN P F +  
Sbjct: 378 MHDDFYTLVTEKSLDREEVTIYNITVTAIDEGMPTLSTSEIISLKVLDTNDNPPAFIKST 437

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YT YV E  P G+ + +       ++A D DSE NA +
Sbjct: 438 YTSYVLENNPRGSSIFS-------LKASDPDSEKNARI 468



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHI--LDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E   +Y+L +TAT+  G  +V S +  +HI  LD NDN P F+   Y   V
Sbjct: 175 LVLEKPLDREEQSVYDLILTATD--GGDSVKSAMTEIHIVVLDANDNVPVFSHSVYEVNV 232

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P  ++V T       IRA D D   N 
Sbjct: 233 KENVPKWSIVTT-------IRATDLDEGING 256



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G ++    LDYE +  +   V A +  G +    V++++ D NDN P        
Sbjct: 275 LNSTTGEIILVGNLDYEESSCHEFEVLAIDGGGLRNRSKVLMYVTDVNDNPPELVMTFVI 334

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V+E  P G  V        ++ A+DKDS  N 
Sbjct: 335 TSVAENTPKGTTV-------AILNAQDKDSGVNG 361


>gi|326673335|ref|XP_003199845.1| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 807

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ KKPLD E    +NL +TA +  +       S+IV +LD NDN P F + +YT  ++E
Sbjct: 195 LILKKPLDREEQASHNLILTAVDGGVPARSGTASIIVRVLDTNDNAPQFDKDSYTINLTE 254

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            APIG+LV+        + A DKD  TN+
Sbjct: 255 NAPIGSLVVK-------LNATDKDEGTNS 276



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 11/101 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +L+P  G +  K+ ++YE  RIY++ + AT+  GA ++   C V + I D NDN P  + 
Sbjct: 295 SLNPNNGEIRVKELINYEDFRIYDMEIIATD-KGANSLTGKCKVKILITDMNDNHPEISI 353

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            ++T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 354 RSFTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 387



 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 405 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 464

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 465 VMENNAPGA 473


>gi|301607896|ref|XP_002933536.1| PREDICTED: protocadherin-23-like [Xenopus (Silurana) tropicalis]
          Length = 3303

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 10/101 (9%)

Query: 15   LHPPYGVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            L+P  G L+ K+P  LD+E    +NL ++A + +     C V V I D NDN P F QL+
Sbjct: 2123 LNPITGDLMVKEPRLLDFETVNKFNLIISAES-SQYTTYCRVTVFIQDDNDNAPVFDQLD 2181

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            Y  +VSE  P    V+        + A D DS  N  +D S
Sbjct: 2182 YISFVSEGQPFNTFVIQ-------VFAADGDSGINGQIDYS 2215



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
           LHP   VL+  + LD E    Y L V A +    +    +IV I  +D NDN P F QL+
Sbjct: 213 LHPLDLVLI--QWLDREELDNYQLEVEAFDGGNPRRTGRLIVDIVVMDANDNPPVFDQLD 270

Query: 73  YTGYVSEAAPIGALVLT 89
           Y G+V E APIG  V T
Sbjct: 271 YKGWVWENAPIGTSVCT 287



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 10/99 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN---MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            +H   G +  ++ +DYE ++ +NL V AT+        A  S+IV ILD NDN+P F   
Sbjct: 1071 IHQSTGWIFLRRSVDYEKSKTHNLKVVATSGDREDQQTATASIIVKILDENDNSPSFDHA 1130

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +   V+E +P+   V+ +      I+A D+DS  N  L
Sbjct: 1131 THFFTVNE-SPVPHGVIGS------IQAFDRDSGNNGQL 1162



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 16   HPPY---GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQ 70
            H P+   G L+  +PLD+E    + L +  +N       +  ++I++ILD NDN P F+ 
Sbjct: 2545 HIPFIVTGKLIINQPLDFEVASAHRLDIFVSNQGFPPLNSSATIIINILDSNDNPPLFSN 2604

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              Y   V E  P+ + +       ++I A D D+  NA
Sbjct: 2605 SEYHVSVREHYPLKSTI-------IIISATDSDTGENA 2635



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
           L P  GVL   + LD+E+  + NL   AT+       + C++ + + D NDN P F Q  
Sbjct: 546 LEPGTGVLSIAQLLDHESAPVLNLVAVATDHGSPPLSSSCTITITVEDTNDNDPIFLQQF 605

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
           Y   + E   +G   L        ++A D DS
Sbjct: 606 YNVSLQEHTVLGHCFLQ-------VKATDADS 630



 Score = 38.1 bits (87), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            LK A+    G++   + LDYE +  + L + A++         +I+ +LD NDN P FTQ
Sbjct: 2326 LKFAIDRYSGIITLTESLDYEESSQHCLRIQASDSV-YHTEAELIIKVLDVNDNPPVFTQ 2384

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
              Y   + E       + T       + A D+DSE
Sbjct: 2385 NIYKVALPELTESNTFITT-------VSATDQDSE 2412



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 10/70 (14%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
           Q+F I     H  +G++ T+K LD+E+  +  L+V +    G+ +V S   V V I D N
Sbjct: 859 QMFTI-----HTQFGIIRTQKELDFESLPLVVLTVQS--QLGSSSVFSSTQVNVTITDAN 911

Query: 63  DNTPYFTQLN 72
           DN P F+  N
Sbjct: 912 DNPPVFSSEN 921



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            L   +G+L T   LD E    Y L+V AT+       +   V V ILD NDN P    +N
Sbjct: 2227 LDSRHGILSTNVILDREIKSSYRLTVQATDRGSPSCSSTSVVTVLILDINDNAPTIPPMN 2286

Query: 73   YTGYVSEAAP---IGALVLTNTSL 93
                  +AAP   IG++   +  L
Sbjct: 2287 TVLIAEDAAPGYSIGSISANDVDL 2310



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   +PLDYE T  Y+L++ A +  G+K   A   + + +LD ND  P F   + +  
Sbjct: 2657 GTVTLVQPLDYEETMKYSLTLQARDGHGSKRNVAFALLSITVLDENDFAPKFLFQSQSCN 2716

Query: 77   VSEAAPIGALVLTNTSLPL 95
            + E  P  + V +  ++ L
Sbjct: 2717 IYENVPFFSPVCSVNAIDL 2735


>gi|301621402|ref|XP_002940044.1| PREDICTED: protocadherin gamma-B5-like [Xenopus (Silurana)
           tropicalis]
          Length = 790

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A++P  G + TK  +D+E T+ Y++SV A +     +   V++ ILD NDN P  +  + 
Sbjct: 282 AINPKSGEITTKGNVDFEETKYYDISVQAQDGGSLASHAKVLIQILDENDNAPEISVTSI 341

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           T  VSE +P G +V        +I+A D DS  N  +D
Sbjct: 342 TTPVSEDSPTGTVV-------ALIKAHDLDSGENGEVD 372



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           ++T   LD E T  YNL++  T+       ++ ++ + ILD NDN P F + NY  YV+E
Sbjct: 393 IITTSTLDREKTPRYNLTIHTTDKGSPTLSSLKTIRLDILDINDNPPKFEKSNYVAYVTE 452

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               GA + +       I+A D+D+E N 
Sbjct: 453 NNQPGASIYS-------IQAIDEDTEENG 474



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+ +  LD E    + L +TA++        + ++ I   D NDN P FTQ  Y   + E
Sbjct: 183 LILQTSLDRETQSNHELILTASDGGNPVQTGTTLIKITVTDFNDNFPVFTQEVYKVNIHE 242

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PI + VL        + A DKD   NA +
Sbjct: 243 NIPIHSTVLQ-------VNASDKDEGINAQI 266


>gi|432891560|ref|XP_004075584.1| PREDICTED: protocadherin-16-like [Oryzias latipes]
          Length = 3188

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL T +PLD E T  Y+L++ A +       +  +V V +LD NDN+P F   +YT  +
Sbjct: 1747 GVLSTSRPLDREKTAGYSLTIVAQDQGRPSLSSTSTVKVAVLDINDNSPQFQSNSYTADI 1806

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKD 103
            SE  PIG+LVL        ++A D D
Sbjct: 1807 SEGVPIGSLVLE-------VKARDAD 1825



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQL 71
            +L+   G L   KPLD E   ++NL++ A +    +   S +  +H++D ND TP F + 
Sbjct: 1535 SLNSNTGSLSISKPLDREEQDVFNLTIVAEDHGIPQHSSSQLLRIHVIDVNDETPLFEEA 1594

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   +SE  P G  VLT       + A D D   N  +
Sbjct: 1595 QYEAQISENQPAGTTVLT-------VSASDSDQGINGQI 1626



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHI 58
            S P Q F I   +     GV+   KPLD+E  R++ L + A + A    V +  V VH+
Sbjct: 286 QSDPDQYFVIDSHS-----GVITLNKPLDFEMRRVHELVIQAQDNATQPEVSNAFVTVHV 340

Query: 59  LDRNDNTP----YFTQLNYTGYVSEAAPIGALV 87
            D NDN P     F   + +  +SE A  G  V
Sbjct: 341 RDYNDNQPTMTIIFLSEDGSPRISEGAQPGQYV 373



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G ++T  PLD E T  Y   V AT+ + A    +   V ++I D NDN P+F Q      
Sbjct: 1851 GRIITAAPLDRERTASYTFEVCATDSSPADPRNSTAQVTIYIQDVNDNAPFFIQDPLIVN 1910

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +S +       L+   +   ++AEDKD   N 
Sbjct: 1911 ISVSN------LSTRRVLATMKAEDKDFGANG 1936



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  K  LD E   +Y L+V A+   G        +V + + D NDN+P FTQ      
Sbjct: 1047 GWLFVKSTLDREVKDMYLLTVLASVGHGHLRKTGSATVRISVTDENDNSPRFTQERIFMA 1106

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E  P G      T    V+ A+D+DS  N  L
Sbjct: 1107 VRENLPAG------TGFGHVL-AKDRDSGPNGRL 1133



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 11/96 (11%)

Query: 16   HPPYGVLLTKKPLDYEATRIYNLSV-TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            H   GV LT + LDYE    Y L+V T+ +   ++A  +V+V   D NDN P FT   Y 
Sbjct: 2225 HFGGGVSLTGQ-LDYEERTWYTLTVRTSDSTHQSEANLTVLVD--DVNDNAPSFTHDLYQ 2281

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V E  P G+ ++T       + A D+DS  N  +
Sbjct: 2282 VTVVEHLPAGSAIIT-------VTATDRDSGNNGKI 2310



 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y L V AT+      +A  S I+ + D NDN P F Q  Y   + E    G+
Sbjct: 418 LDREERDTYELRVMATDSGSPPLRAESSFIIEVTDVNDNPPLFDQPVYRQAIPEVVFPGS 477

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            VL        + A DKD   N 
Sbjct: 478 FVLQ-------VTARDKDQGPNG 493



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 15   LHPPYGVLLTKK--PLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
            + P  G L T +    DYE   I  L V      G     +  +V + + D NDN P F 
Sbjct: 2324 IDPSNGTLFTGQNTEFDYEHPSI--LVVVEAQDQGFPPLSSTTTVQIQVSDVNDNAPIFK 2381

Query: 70   QLNYTGYVSEAAPIGALVLT 89
            Q  YT  VSE   +G+ VLT
Sbjct: 2382 QSKYTATVSEDGLLGSTVLT 2401



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L  ++PLD +    + + V A +  G  A+  V + + D ND+ P+F   + T  + E
Sbjct: 2552 GALRLQRPLDSKTQLSHTIVVQAVDGQGHYALAPVHIEVKDINDHKPFFPLQHITASIKE 2611

Query: 80   AAPIGALV 87
              P  +LV
Sbjct: 2612 NQPENSLV 2619



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T K LD E+   Y ++V A +  +    A  +V + ++D NDN P F +L Y   V
Sbjct: 1643 GVITTTKSLDRESQDCYTVTVYAKDGGLPPNYAKATVKIKVVDVNDNAPIFGRLYYNVEV 1702

Query: 78   SEAAPIGALVLTNTSLPL-VIRAEDKDSETNALLD 111
             E            +LPL  +RA D D+ ++  ++
Sbjct: 1703 PE---------NQEALPLFTLRATDPDAGSSGEIN 1728



 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+  + LD+EA   YNL+V  ++    +  +  SV++ + D NDN P F++ +YT  +
Sbjct: 2447 GSLILVEKLDFEALPSYNLTVVVSDRGIPQHSSSVSVLISVKDANDNPPAFSRTDYTVVL 2506

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE    G  +L        + A D DS  N 
Sbjct: 2507 SEGTAAGTEILH-------LSASDPDSAPNG 2530


>gi|326673341|ref|XP_003199848.1| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 819

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ KKPLD E    +NL +TA +  +       S+IV +LD NDN P F + +YT  
Sbjct: 192 FADLILKKPLDREEQASHNLILTAVDGGVPARSGTASIIVRVLDTNDNAPQFDKDSYTIN 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E APIG+LV+        + A DKD  +N+ L
Sbjct: 252 LTENAPIGSLVVK-------LNASDKDEGSNSDL 278



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +L+P  G +  K+ ++YE  RIY++ + AT+  GA ++   C V + I D NDN P  + 
Sbjct: 295 SLNPNNGEIRVKELINYEDFRIYDMEIIATD-KGANSLTGKCKVKILITDMNDNHPEISI 353

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 354 RSVTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 387



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNT 65
           FA+ K + +  Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN 
Sbjct: 396 FALKKSSDN--YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNV 453

Query: 66  PYFTQLNYTGYVSEAAPIGA 85
           P F Q  YT  V E    GA
Sbjct: 454 PQFPQTFYTIPVMENNAPGA 473


>gi|328710949|ref|XP_001947627.2| PREDICTED: protocadherin-like wing polarity protein stan-like
           isoform 3 [Acyrthosiphon pisum]
          Length = 3166

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 10/103 (9%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPY 67
           FAI   A H   G++   +PLDY+  + + LSVTAT+  G     ++ V++ D N+  P 
Sbjct: 769 FAI---ATHSGKGLVTVAQPLDYKQEKRFILSVTATDSGGLSDTATIYVNVTDANNFAPI 825

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           F    YT  + E AP+G+ V       LV+ A D D   NAL+
Sbjct: 826 FDNAPYTASIYEDAPVGSTV-------LVVSATDGDVGQNALI 861



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+  ++ LD E   +Y + V A++ A        A+ S++V +LD NDN P F++  YT
Sbjct: 452 GVVSVRRNLDREVCEVYTVMVKASDQAAPPSPRRSAIASLVVKVLDDNDNYPQFSERAYT 511

Query: 75  GYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNALL 110
             V+E        L     P++  I+A D D   NA++
Sbjct: 512 ANVAED-------LNPNQRPVISTIKATDADQGLNAVV 542



 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G ++T K LD E    Y L+VTA +           V + I D NDN P F   +Y G V
Sbjct: 882 GAIVTTKALDREVQSGYLLTVTARDGGNPPLSDTTDVEISITDINDNAPQFFNASYYGSV 941

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDG 112
           SE A      LT TS+ L + A D DS  N     AL DG
Sbjct: 942 SEDA------LTGTSV-LQVSASDADSGLNGRIKYALDDG 974



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            + P  G+L T   LD E+   YN+ V A +  G+ ++ +   V + I D ND+ P F   
Sbjct: 980  IDPTSGILRTAASLDRESIPQYNIHVFAID-KGSPSLSTAVPVTIRIEDVNDSPPVFESD 1038

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                Y+ E +PIG+ V         + A+D D   NA++
Sbjct: 1039 KLVMYIPENSPIGSTVGE-------LYAKDPDEGPNAIV 1070



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   LD E    Y   V A +       A  SV+V I D NDN P F    Y   +
Sbjct: 673 GWVYTTHLLDRETNPKYQFQVVAEDGGDPPKSATASVVVTIQDVNDNEPIFHPKQYDVVI 732

Query: 78  SEAAPIG 84
           SE +P G
Sbjct: 733 SEDSPPG 739


>gi|312374399|gb|EFR21960.1| hypothetical protein AND_15952 [Anopheles darlingi]
          Length = 3475

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            ++H   G ++ ++PLDY+  ++Y L+++A ++     K++  V + + D NDN PYF Q 
Sbjct: 1493 SVHTVTGAIVIRQPLDYDLVQLYQLNISAEDLGYKSKKSIALVTITLTDINDNAPYFNQS 1552

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y  Y++E +P  + V           A D+DS  NA++
Sbjct: 1553 LYNAYIAENSPASSFVYR-------ALAHDRDSPKNAII 1584



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQL 71
           A+ P  G+L     LD E    Y+L V A +    +K+  S I +++LD NDN+P F   
Sbjct: 406 AVGPADGLLRVSGSLDREIKAAYDLQVVAKDRGDPSKSTQSRIRINVLDENDNSPIFDPK 465

Query: 72  NYTGYVSEAAPIGALVL 88
            Y+  ++E A IGA VL
Sbjct: 466 QYSAAIAENASIGASVL 482



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           +L+P  G+      LDYE  + Y L V A +       +  +V  +++D NDN P F  +
Sbjct: 163 SLNPQTGIFTLTARLDYEEVQHYILVVQAQDNGFPSLSSTLTVYCNVIDLNDNAPIFDPM 222

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           +Y+  + E API + V+T       + A D DS  N  ++
Sbjct: 223 SYSNEIFENAPINSPVVT-------VSATDIDSGANGRVE 255



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLNY 73
            + P  GV+ ++   DYE    Y L V A N     +    VIVHI   N+  P F Q  +
Sbjct: 1599 IEPGTGVISSRTTFDYEEQDRYTLIVGAANPDSVMRNETKVIVHITGVNEYYPKFVQPVF 1658

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
               VSE+A IG+ V +       I+A DKD+  +     LL GS+N
Sbjct: 1659 HFDVSESAEIGSSVGS-------IQATDKDAGEDGKVYYLLVGSSN 1697



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L+V A +    +   S  V+V++LD+NDN P FT+L ++  V
Sbjct: 1077 GEIYTTVRLDREEMAFYTLTVDAVDQGVPQLTGSAAVLVNVLDKNDNPPKFTRL-FSVNV 1135

Query: 78   SEAAPIGALVLTNTS 92
            +E A IG  V+  TS
Sbjct: 1136 TENAEIGQFVIKITS 1150



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 14/97 (14%)

Query: 1    MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIY-------NLSVTATNMAGAK--AV 51
            +  P  +F+I      P  G L +K+ + Y+ T+++       +L+V AT+         
Sbjct: 1267 LQQPSDMFSI-----DPATGELFSKRRIHYKHTQMFPSPENMFSLTVLATDNGKPPMYTE 1321

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            C V V+I+D N+N P F+Q +Y     + A +G  +L
Sbjct: 1322 CLVNVNIVDANNNPPVFSQTSYLAPAPKGATVGQRIL 1358



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFT 69
            ++H   GV++  + LD E      L+V A N  G +        VI+ I D ND   +  
Sbjct: 1702 SIHADTGVIVVSRNLDRETQSRVVLTVLAKNYGGIRGNDTDEAQVIISIQDGNDPPEFLL 1761

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             L Y   +SE  P G      T +P+ ++A DKD
Sbjct: 1762 DL-YETTISEGDPPG------TKVPVTVKAIDKD 1788



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 21   VLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            V + +  LDYE  + Y + + A  ++    ++V  +IV++ D NDN P   Q  Y   V 
Sbjct: 975  VTVNRGGLDYERNQQYEVWIEAADSDRPSLRSVLQLIVNVTDANDNAPVMDQQVYVAEVM 1034

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E      L+         + A D DS+ N  +
Sbjct: 1035 EEESPSQLIAK-------VSATDADSDENGQI 1059



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           + LD E    Y L++ A +          +V V + D ND++P F + +Y   V E  PI
Sbjct: 659 RALDRELQEEYILTLVAMDTGSPPLTGTGTVRVVVQDTNDHSPEFERQSYYAVVPENQPI 718

Query: 84  GALVLTNTSLPLVIRAEDKDSETNALL 110
           G  V+     P   RA DKD+  NA +
Sbjct: 719 GTKVV----WP---RATDKDAGANARI 738



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 17/95 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--------VHILDRNDNTPYFTQL 71
           GV+   K L++E   +Y ++V A + AG     + +        + I D NDN P F   
Sbjct: 540 GVVRVAKNLNFERKSLYTITVRAEDCAGDTDGGAEVRFDTARLSITITDINDNPPTFLDS 599

Query: 72  NYTGYVSEAA--PIGALVLTNTSLPLVIRAEDKDS 104
            Y  Y+ E    P G  V+T       +RA D DS
Sbjct: 600 PYLAYIMENVIPPNGGYVIT-------VRAYDADS 627


>gi|328710951|ref|XP_003244410.1| PREDICTED: protocadherin-like wing polarity protein stan-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 3165

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 10/103 (9%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPY 67
           FAI   A H   G++   +PLDY+  + + LSVTAT+  G     ++ V++ D N+  P 
Sbjct: 769 FAI---ATHSGKGLVTVAQPLDYKQEKRFILSVTATDSGGLSDTATIYVNVTDANNFAPI 825

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           F    YT  + E AP+G+ V       LV+ A D D   NAL+
Sbjct: 826 FDNAPYTASIYEDAPVGSTV-------LVVSATDGDVGQNALI 861



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+  ++ LD E   +Y + V A++ A        A+ S++V +LD NDN P F++  YT
Sbjct: 452 GVVSVRRNLDREVCEVYTVMVKASDQAAPPSPRRSAIASLVVKVLDDNDNYPQFSERAYT 511

Query: 75  GYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNALL 110
             V+E        L     P++  I+A D D   NA++
Sbjct: 512 ANVAED-------LNPNQRPVISTIKATDADQGLNAVV 542



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G ++T K LD E    Y L+VTA +           V + I D NDN P F   +Y G V
Sbjct: 882 GAIVTTKALDREVQSGYLLTVTARDGGNPPLSDTTDVEISITDINDNAPQFFNASYYGSV 941

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDG 112
           SE A      LT TS+ L + A D DS  N     AL DG
Sbjct: 942 SEDA------LTGTSV-LQVSASDADSGLNGRIKYALDDG 974



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            + P  G+L T   LD E+   YN+ V A +  G+ ++ +   V + I D ND+ P F   
Sbjct: 980  IDPTSGILRTAASLDRESIPQYNIHVFAID-KGSPSLSTAVPVTIRIEDVNDSPPVFESD 1038

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                Y+ E +PIG+ V         + A+D D   NA++
Sbjct: 1039 KLVMYIPENSPIGSTVGE-------LYAKDPDEGPNAIV 1070



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   LD E    Y   V A +       A  SV+V I D NDN P F    Y   +
Sbjct: 673 GWVYTTHLLDRETNPKYQFQVVAEDGGDPPKSATASVVVTIQDVNDNEPIFHPKQYDVVI 732

Query: 78  SEAAPIG 84
           SE +P G
Sbjct: 733 SEDSPPG 739


>gi|326673287|ref|XP_002664318.2| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 819

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ KKPLD E    +NL +TA +  +       S+IV +LD NDN P F + +YT  
Sbjct: 192 FADLILKKPLDREEQASHNLILTAVDGGVPARSGTASIIVRVLDTNDNAPQFDKDSYTIN 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E APIG+LV+        + A DKD  +N+ L
Sbjct: 252 LTENAPIGSLVVK-------LNASDKDEGSNSDL 278



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +L+P  G +  K+ ++YE  RIY++ + AT+  GA ++   C V + I D NDN P  + 
Sbjct: 295 SLNPNNGEIRVKELINYEDFRIYDMEIIATD-KGANSLTGKCKVKILITDMNDNHPEISI 353

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 354 RSVTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 387



 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 405 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 464

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 465 VMENNAPGA 473


>gi|62896915|dbj|BAD96398.1| protocadherin beta 7 precursor variant [Homo sapiens]
 gi|120660170|gb|AAI30334.1| Protocadherin beta 7 [Homo sapiens]
 gi|313883256|gb|ADR83114.1| protocadherin beta 7 [synthetic construct]
          Length = 793

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275


>gi|68533589|gb|AAH98574.1| Protocadherin beta 7 [Homo sapiens]
          Length = 793

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275


>gi|11036656|ref|NP_061763.1| protocadherin beta-7 precursor [Homo sapiens]
 gi|13431373|sp|Q9Y5E2.1|PCDB7_HUMAN RecName: Full=Protocadherin beta-7; Short=PCDH-beta-7; Flags:
           Precursor
 gi|5457049|gb|AAD43761.1|AF152500_1 protocadherin beta 7 [Homo sapiens]
 gi|14009463|gb|AAK51617.1|AF217750_1 protocadherin-beta7 [Homo sapiens]
 gi|119582381|gb|EAW61977.1| protocadherin beta 7 [Homo sapiens]
 gi|120660168|gb|AAI30332.1| Protocadherin beta 7 [Homo sapiens]
 gi|189054680|dbj|BAG37530.1| unnamed protein product [Homo sapiens]
          Length = 793

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275


>gi|62896679|dbj|BAD96280.1| protocadherin beta 7 precursor variant [Homo sapiens]
          Length = 793

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275


>gi|449496511|ref|XP_002196710.2| PREDICTED: protocadherin Fat 4-like [Taeniopygia guttata]
          Length = 2518

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +   DYE    YNL+VTA N   A   +A   V V ++D NDN P F Q +Y+  
Sbjct: 1756 GIIKIRNSPDYETMNKYNLTVTAINNKSAPFYQAATHVSVAVIDVNDNAPVFVQSSYSAS 1815

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            ++   P+GA VLT       + A D+D   N L+D
Sbjct: 1816 INMVNPVGAPVLT-------VSATDRDQGQNGLID 1843



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G ++ KKPLDY     +NL+V A    G + A  S+I+++ D +   PYF+Q  Y G +S
Sbjct: 170 GNIMVKKPLDYNEVNFFNLTVQAKEKFGNQSATASLIINVEDYDTLNPYFSQSVYHGNIS 229

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
           E   +G L    +++P V+ A+D D   N
Sbjct: 230 ENQ-VGPL----STVPKVL-AQDGDKGIN 252



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)

Query: 4   PVQLFAILKPALHP--PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR 61
           PV+   + + AL      GV+ TKK LDYE+ + Y L+++ ++ + A     V + + D 
Sbjct: 515 PVEFRVLTESALFAIDGKGVISTKKKLDYESQKNYTLNISLSDGSTADYAM-VFIRVTDV 573

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           NDN+P F   + T  ++E  P+G  V         + A D D   N L+
Sbjct: 574 NDNSPVFGTTSTTIAIAENMPVGTNVTG-------VSATDMDEGFNGLV 615



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G L+TKKPLD E    Y L + AT+       A +V S+ V   D NDN P F Q +Y+ 
Sbjct: 1240 GKLMTKKPLDREVMDSYELKIIATDSGKPPQSASSVLSITVE--DVNDNPPVFPQKSYSV 1297

Query: 76   YVSEAAP 82
             V E  P
Sbjct: 1298 TVRENEP 1304



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 7/48 (14%)

Query: 56  VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           V ++D NDN P F Q NY+  VSE A I + V+        + AEDKD
Sbjct: 103 VELIDVNDNAPEFQQANYSASVSEVAGINSTVIK-------VEAEDKD 143


>gi|395541765|ref|XP_003772809.1| PREDICTED: protocadherin Fat 4 [Sarcophilus harrisii]
          Length = 5148

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 11/100 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQ 70
            A++   G L   KPLDYE  + + ++++AT+  G +A    CS+I+++LD NDN+P F  
Sbjct: 3306 AINASTGTLTLAKPLDYELHQKHEMTISATD-GGWRARTSYCSIIINVLDVNDNSPIFIP 3364

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y+  V E AP G  V+        + A D DS +NA++
Sbjct: 3365 EEYSPTVLENAPSGTTVMR-------LNATDADSGSNAVI 3397



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1530 SISPNTGGIFLAKKLDFETQPLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPTFPPG 1589

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    ++E  PIG+ V++       + A D D++ N  L
Sbjct: 1590 DIFKSITENLPIGSSVIS-------VTARDPDADINGQL 1621



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+  A +  G      +  +ILD NDN P F+  +Y+
Sbjct: 2057 LNPVTGVFNLTRSLDYETRQYYILTARAEDGGGQFMTIRIYFNILDVNDNPPVFSSTSYS 2116

Query: 75   GYVSEAAPIGALVL 88
              + E  P+G+ +L
Sbjct: 2117 TSLMENLPLGSTIL 2130



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L  ++ LD E      L +TAT+ +G+ A+    +V V + D NDN P F    Y+  
Sbjct: 2480 GELKVRQKLDRETKEKCILLITATD-SGSPALTGTGTVNVIVSDVNDNVPTFAHKTYSAT 2538

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +SE AP G+ V       L++ A D D+ TNA++
Sbjct: 2539 ISEDAPTGSDV-------LLVSASDADASTNAVI 2565



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 22/111 (19%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++H   G + + + LD E    Y L+V  ++          +VI+++LD NDN P F+Q+
Sbjct: 2885 SIHHSTGEIRSIRSLDREKVSQYVLTVRCSDKGTPPQSTTVTVIINVLDENDNAPRFSQI 2944

Query: 72   NYTGYVSEAAPIGALV-------------------LTNTSLPLVIRAEDKD 103
             +T  V E AP+G  V                   +T+TSLP  I     D
Sbjct: 2945 -FTAPVPENAPLGYTVTRVTTSDEDIGVNAVSRYSITDTSLPFTINPSTGD 2994



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V A ++      ++  V V +LD NDN+P F  + 
Sbjct: 800 LDPVSGRLSTISSLDREEQAFYSLLVLAVDLGSPPQTSLTRVNVSLLDVNDNSPVFYPVQ 859

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D DS  N 
Sbjct: 860 YFAHIQENEPAGSYITT-------VSASDPDSGPNG 888



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLDYEA R Y+L++ A +            ++ +LD NDN P     Y
Sbjct: 466 MDPETGLITVREPLDYEARRQYSLTLQAHDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 525

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 526 FPATSRFASVDENAQVGTVV 545



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 14/90 (15%)

Query: 28  LDYEATRIYNLSVTATNMAGA-------KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           LD E    YNL+V+ ++  GA        +V S+++ + D ND+ P F+QL Y   +SE 
Sbjct: 594 LDRERIPSYNLTVSVSDNHGAPPGAVARSSVASLVIFVNDINDHPPVFSQLVYRVNLSEE 653

Query: 81  APIGALVLTNTSLPLVIRAEDKDSETNALL 110
           AP G+ V         + A D DS  NA L
Sbjct: 654 APPGSYVSG-------VSATDGDSGLNANL 676



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A+    G ++    LD+EAT  Y+L + A +       + C++ + ILD NDNTP F + 
Sbjct: 1425 AIDSATGQVILAGQLDHEATASYSLLIQAVDSGTVSLNSTCTLSIDILDENDNTPSFPKS 1484

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                 V E   IG LV +       + A D DS  NA
Sbjct: 1485 TLFVDVLENMRIGELVTS-------VTATDSDSGDNA 1514



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L+++  LD EAT  Y L V   +    K      V V + D NDN P F
Sbjct: 359 LNPSGEGAFLHLVSRGGLDREATAYYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 418

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 419 GSSHYQAGVPEDAAVGSSVLQ-------VSAADADEGTNA 451



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 26   KPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +PLD  A   Y + + A++    +   S I  V + D NDN P F QL+Y   +SEA P+
Sbjct: 1119 RPLDVHAGS-YQVEILASDRGVPQLSSSFILTVSVHDVNDNPPVFDQLSYEVTLSEAQPV 1177

Query: 84   GALVLTNTSLPLVIRAEDKDSETNA 108
             +L          ++A D+DS  N 
Sbjct: 1178 NSLFFK-------VQASDQDSGANG 1195



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
           +H   GV+ TK  LD E    Y L V AT+    ++    IV I  LD  DN P F+Q  
Sbjct: 904 IHSHTGVISTKMVLDREEKTAYQLQVVATDGGHLQSPNQAIVTITVLDTQDNPPVFSQAV 963

Query: 73  YTGYVSEAAPIG 84
           Y+  V E   +G
Sbjct: 964 YSFVVFENVALG 975



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NY  
Sbjct: 1214 PDGQLYVKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYVF 1273

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            Y  E    G+ V        +I A DKD
Sbjct: 1274 YFEEEQRGGSFV-------GMINAIDKD 1294



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F + +Y 
Sbjct: 2988 INPSTGDIIISRPLNREDTDRYRIRVSAHD-SGWTVSTDVAIFVTDVNDNAPRFKKPSYY 3046

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IGA V         + A D D  +N 
Sbjct: 3047 LDCPELTEIGAKVAQ-------VSATDPDEGSNG 3073



 Score = 37.7 bits (86), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LDYE  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3411 IDPNSGVITTQGFLDYETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3470

Query: 73   YTGYVSEAAPIGALV 87
            Y   VSEAA  G +V
Sbjct: 3471 YYFEVSEAASKGTVV 3485



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G+L  ++ LD E+   YNL +   +M     +   +   V + +LD NDN P F     T
Sbjct: 2164 GILKIRQTLDRESQSFYNLVIQVHDMPLSSTSSYTSTAQVSIILLDVNDNAPTFISPKLT 2223

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             YV E  P   +V          +A D+DS  N+ ++
Sbjct: 2224 -YVPENTPTDTVVFK-------AQATDRDSGPNSYIE 2252


>gi|156386258|ref|XP_001633830.1| predicted protein [Nematostella vectensis]
 gi|156220905|gb|EDO41767.1| predicted protein [Nematostella vectensis]
          Length = 4187

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 46/90 (51%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+++KK  D E      L + A +  G  +   VIV I D+NDN P F     TG+V+E
Sbjct: 1675 GVIISKKSFDAEEVTHCKLEIRANSTDGQHSSTLVIVTIQDKNDNQPIFEHARITGHVTE 1734

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
             +P G  VL +    LV  A D+D   + L
Sbjct: 1735 GSPQGTAVLDHKGSQLVAVATDQDISGDKL 1764



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 17/118 (14%)

Query: 2    SHPVQLFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVC 52
            S+ V  +AIL+ A      +    G +   + LDYE T++Y L+V A++ AG    ++  
Sbjct: 3198 SNDVITYAILRGADSGLFSIDRKNGTIHVNRKLDYETTKLYTLTVEASD-AGPPVLRSTS 3256

Query: 53   SVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V + + D NDN P F++  Y+  V E + +G  VL        + A D+DS TNA +
Sbjct: 3257 YVRISVTDSNDNGPEFSEKRYSAKVDENSALGTFVLQ-------VFATDRDSGTNAQI 3307



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 9/104 (8%)

Query: 9    AILKPALHPPYGVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            A+ K  +    G+L ++   D E  +  I ++ + AT+  G    C V VH++D NDN P
Sbjct: 2488 AMRKFRIDADSGMLYSRLMFDRENSSQAIMSVPIRATDGGGRFGFCVVEVHLIDENDNQP 2547

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             F   NY   +S +  +G  VL  +       A D D+ +NA L
Sbjct: 2548 IFELKNYDTTISRSVTMGTPVLMTS-------ASDPDASSNAAL 2584



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            LD E    YN  V+A ++ G     ++ +H+ D NDN P F+Q +Y   V E AP+  ++
Sbjct: 3024 LDRETRPFYNFMVSAADIGGQACYSNISIHLDDVNDNRPLFSQSSYFTAVYEDAPLKKVL 3083

Query: 88   LTNTSLPLVIRAEDKDSETNALL 110
            L        ++A+D D   N  L
Sbjct: 3084 LQ-------VKADDADVGVNRKL 3099



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 19   YGVLLT-KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            YG  +T    LD E    Y+L V AT+     +V  V ++ILD NDN+P   +  Y  +V
Sbjct: 1366 YGGFITVAHSLDREEKSFYSLRVEATDGYNTASV-PVTINILDVNDNSPQPARREYRAHV 1424

Query: 78   SEAAPIGALVLT 89
            +E + +G LV T
Sbjct: 1425 AENSDVGTLVTT 1436



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+     LD E+   Y+L+++A++     +   + + I D NDN P  TQ  Y  ++ E
Sbjct: 2916 GVIFVHGSLDRESVGSYDLNISASDGL-FTSFAQMKIDIEDANDNPPICTQSIYVEHIKE 2974

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P+G+ VLT       + A D D   NA L
Sbjct: 2975 NTPLGSTVLT-------VGATDADVGVNAEL 2998



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 9/98 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G++  +KPL+ E    Y L+V    M G      ++ +V + +L+ ND  P F+   Y G
Sbjct: 3118 GIISLEKPLNRELKENYTLNVEV--MDGGTPPLSSIATVQIKVLNINDVPPEFSHSIYHG 3175

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             VSE APIG  V+    +  V R    D  T A+L G+
Sbjct: 3176 NVSEDAPIGNEVV---RVRAVSRESSNDVITYAILRGA 3210



 Score = 41.6 bits (96), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 26  KPLDYE-ATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLD E A   YN+++TA +        S +  V++LD NDN P F Q  Y   +SE AP
Sbjct: 274 KPLDRELAPFGYNVTLTAYDKGTPVRNGSYVLRVNVLDENDNNPEFNQSRYITNLSELAP 333

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNA 108
           I   VL        + A DKD+ +N 
Sbjct: 334 IHTPVLR-------VLATDKDAGSNG 352



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            ++HP  G + T K LDYE T  Y   +  T+    +  A   V +H+ D ND  P F+  
Sbjct: 1778 SIHPATGAITTAKVLDYEVTPQYAFKIKVTDSGNPRLSAFADVKIHVTDINDIAPVFSAS 1837

Query: 72   NY 73
             Y
Sbjct: 1838 TY 1839



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPY 67
           K  ++   G + TK  LDYE+ + ++L+V A +     +   +   V+V+ILD ND+ P 
Sbjct: 366 KFEINSKTGQIYTKGDLDYESRQRFDLTVAALDGVPLQSRKISTVPVVVNILDANDHDPE 425

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           F    Y   + E    G  V T       + AED DS  N 
Sbjct: 426 FKAPEYRKDLYEDLTPGTSVFT-------VSAEDLDSGGNG 459



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G++ T +PLD E    Y L+V+A++  G   V + +   V I D NDN P F + 
Sbjct: 1153 IDPQSGLITTLRPLDREFKSEYKLTVSASD-GGTPPVSTDVTFTVKITDENDNQPEFKEK 1211

Query: 72   NY 73
             Y
Sbjct: 1212 QY 1213



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYE    Y + V A N++    +    V+V +LD ND TP F    Y   + E   IG+
Sbjct: 2715 LDYEIRNRYVMIVEA-NVSAINQIARTVVVVQVLDINDVTPKFVSDPYLASIPENIDIGS 2773

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + AED DS +N ++
Sbjct: 2774 KVLR-------VFAEDLDSGSNGMV 2791



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T+  LD E    +   V AT+    +  ++ +V   +LD ND  P F+Q  +   V
Sbjct: 2813 GWITTRGALDREKQPSFEFQVRATDNGTTRLTSLTTVRAIVLDVNDTPPKFSQSEFMASV 2872

Query: 78   SEAAPIGALVLTNTS 92
             E A IG  V T T+
Sbjct: 2873 KEDALIGQSVTTITA 2887



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTP 66
             + K  + P  G + T   LD+E    Y L+V A +        +  V+++I+D ND  P
Sbjct: 1043 GVDKFIIDPDTGAIRTAGELDHEVADHYWLTVQAKDGESYPLYTNIPVLINIVDLNDEAP 1102

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            YF    Y   ++E  P G+ V+        + A+D DS
Sbjct: 1103 YFAPSTYYPVLAENLPSGSSVVQ-------VTAKDPDS 1133



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G L    PLD E    Y L+++A +    +     I  V I D ND +P F +  Y   +
Sbjct: 741 GELTVAMPLDRETISSYTLNISAVDCGKHRKSAYTILNVKITDVNDCSPVFDKTVYEVTL 800

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   +G  V         + A DKD  TN  +
Sbjct: 801 PENITVGQTVTH-------VHASDKDQGTNGFI 826



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 8   FAILKPA---LHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMA---GAKAVCSVIVHIL 59
            A L+P    + P  G++ T   LD +       NL V A++       +    V + + 
Sbjct: 465 LANLRPVPFEIEPDTGIIRTTTNLDRDTGLPEFINLQVRASDFGTPLRRETETLVKMRVK 524

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
           + NDN P   Q      V   AP+G L+ T T++ + I  +D+
Sbjct: 525 EMNDNAPVLKQFKCNILVDRNAPVGVLITTVTAIDIDISDKDQ 567



 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            GV+     +D E    Y L V A +      V   +V I   D NDN+P F+  N T  +
Sbjct: 3327 GVIKVSGDIDREEVASYRLKVRAQDQGLPPQVADTVVDIEVTDVNDNSPEFSSTNLTTVL 3386

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE++   A V+        +R  D+D+  N 
Sbjct: 3387 SESSLPNAAVIH-------LRPHDRDALGNG 3410


>gi|47227865|emb|CAG09028.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1753

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 8/83 (9%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTP 66
           K +L+P  G L   KPLD E   I+NL++TA +      + A+ +C   VH++D ND  P
Sbjct: 827 KFSLNPNTGSLSILKPLDREEQDIFNLTITAEDHGMPQQSSAQLLC---VHVIDVNDEVP 883

Query: 67  YFTQLNYTGYVSEAAPIGALVLT 89
           +F +  Y   VSE  P G  VLT
Sbjct: 884 WFEETQYEAQVSENQPSGTSVLT 906



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL T +PLD E    Y L+VTA +       +  +V V +LD ND++P F    YT  +
Sbjct: 1041 GVLSTSRPLDREVRARYMLTVTAQDQGHPPLSSTATVEVSVLDINDHSPQFESSAYTADI 1100

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  PIG+ VL        ++A D D   N+
Sbjct: 1101 PEDIPIGSHVLD-------VKATDLDQGPNS 1124



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 12/100 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  GV+ T K LD E    Y ++V A +  +    A  +V + +LD NDNTPYF +L 
Sbjct: 932  INPVTGVITTTKALDRELREYYTVTVYAKDGGLPPNYAKATVRIRVLDENDNTPYFGRLY 991

Query: 73   YTGYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNALLD 111
            Y+  V E            ++PL  +RA D+DS  + +++
Sbjct: 992  YSIEVPENL---------EAMPLFTLRANDQDSGKSGIIN 1022



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV LT  PLDYE    Y ++V+ ++ +   +  ++ V + D NDN P FTQ  Y   V+E
Sbjct: 1562 GVSLTG-PLDYEERTWYTVTVSTSD-SKHHSEANLTVLVDDVNDNAPTFTQDMYQVTVAE 1619

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P G+ V+T       + A D+DS  N  +
Sbjct: 1620 HLPAGSAVVT-------VTATDRDSGDNGKI 1643



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L  K  LD E   +Y L+V AT   G        +V V + D NDN+P FTQ      
Sbjct: 304 GWLFVKSTLDREVKDMYLLTVLATQGHGQLKKTGSATVRVSLTDENDNSPRFTQDRVFMA 363

Query: 77  VSEAAPIG 84
           V E  P G
Sbjct: 364 VKENLPAG 371



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN---MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G ++T  PLD E    Y   V AT+   +    +   V + + D NDN P+F Q      
Sbjct: 1145 GSIITAAPLDREKIASYTFKVCATDSSPLNPRNSTAEVTISVQDVNDNAPFFIQDPLIVN 1204

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VS    IG+  +++  +   +RAEDKD   N 
Sbjct: 1205 VS----IGS--VSSRRVLATMRAEDKDFGANG 1230



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           + P  G L T  PLD+EA    +L V A +    A     V + I D NDN P F+  +Y
Sbjct: 85  VDPDSGALRTSLPLDHEAQPSLDLEVQARSGNPPAFGQTRVHISITDINDNPPVFSPSSY 144

Query: 74  TG-YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               + E   +G +V         ++AED+DS  N  L
Sbjct: 145 ESLLLPEPTEMGTVVYR-------VQAEDQDSGANGQL 175



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
           G +L  +PLDYE    Y+L +   +++      +++   + + D ND+ P F +   T  
Sbjct: 619 GDVLLARPLDYEQYSRYSLQIEVDDLSQVMPSSTLVHLNIEVEDSNDHAPQFPEDPITVV 678

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNALL 110
           + E+   G+ V T        +A DKD SE N+ L
Sbjct: 679 IPESMESGSSVYT-------FQATDKDGSEANSEL 706



 Score = 34.3 bits (77), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 28  LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           L YE+T  Y+L V A +    +  A   ++VH+   ND+ P F  L+Y   + E  PI  
Sbjct: 204 LRYESTPRYDLQVIAKDSGVPQLSATFVLVVHVQAENDHGPVFDTLSYRVELKEGTPINK 263

Query: 86  LVL 88
             L
Sbjct: 264 RFL 266


>gi|327269525|ref|XP_003219544.1| PREDICTED: neural-cadherin-like [Anolis carolinensis]
          Length = 2539

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  LKP        LL  +PLD+E T+++ LS+ A N+A     +  +V V+I D 
Sbjct: 698 PVRFY--LKPNRADGSASLLVAEPLDFETTKLFTLSIKAQNVATIPLASFTTVYVNITDV 755

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           NDN P+FT   Y   V E A IG  V+        + A D DS  N 
Sbjct: 756 NDNVPFFTSSTYEVSVPEGAGIGTSVMQ-------VLATDADSGLNG 795



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQL 71
           ++ P  GV+ T +  D E  R Y LSV AT+ A    +  C + ++I D NDN P F   
Sbjct: 494 SIDPDSGVITTTRSFDREKQREYMLSVIATDQAQEPLIGMCQITIYIADENDNDPKFENS 553

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y  ++ E  P+G   L  T       A D D   NA +
Sbjct: 554 RYQYFLREDTPVGTSFLCAT-------AHDDDQGANAAI 585



 Score = 42.7 bits (99), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G ++    LDYE    Y L V AT+M G  A+ S   V+V + D NDN P F  L Y   
Sbjct: 1364 GWVIVAGELDYETVAQYQLVVIATDM-GQPALSSSATVLVALQDVNDNGPEFDAL-YNPV 1421

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P   +V  N +  L + A+D+DS  N 
Sbjct: 1422 VWENTPSPQVVQMNDTSTL-LYAKDRDSPANG 1452



 Score = 41.6 bits (96), Expect = 0.070,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +L  + LDYE  R Y L +  ++         V++++++ ND  P F+Q  Y 
Sbjct: 927  VEPEKGTILIAQHLDYEQERHYKLQLVTSDGKWENHTL-VVINVININDEAPVFSQDEYH 985

Query: 75   GYV-SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            G V  E A +  LVL        + A D D ET
Sbjct: 986  GSVLEELADLPVLVLQ-------VSATDPDQET 1011



 Score = 40.4 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 11/106 (10%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDN 64
            + LF++  P     Y VL T   LD E    Y + V A +  G     +  + + D ND+
Sbjct: 1141 LNLFSV-NPVTGTIYTVLST---LDREKRDKYLVVVEAKDGGGLTGTGTATILVTDINDH 1196

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P FTQ  YT +VSE A +  LV         + A D+D   NA++
Sbjct: 1197 APAFTQKIYTAFVSEGASVNTLVAE-------VSATDEDEGENAVV 1235



 Score = 39.3 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 18  PYGVLLTKKPLDYE-ATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           P GV+ + + LD+E +  +Y   V A +          SV + + + ND +P F+Q  Y 
Sbjct: 281 PEGVISSNQQLDFEQSNHMYEFVVIAVDQGHPARTGTASVRIRMANVNDESPVFSQSVYE 340

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            ++SE A  G LV T       I A+D D +
Sbjct: 341 TFLSEDAGPGTLVAT-------ILAKDPDGD 364



 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 14/114 (12%)

Query: 2   SHPVQLFAILKPA----LHPPYGVLLTKKPLDYEATR-IYNLSVTATNMAGA-KAVCSVI 55
           S P+    ++ P+    L    G L     +DYE+   +Y+  V A        +V  VI
Sbjct: 160 SQPICYTLLMNPSGLFILDQETGELSLTHAVDYESEHHLYHFLVKAMERESLLSSVTEVI 219

Query: 56  VHILDRNDNTPYFTQLNYT-GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           VHI D ND  P F Q  Y+   + E+ PIG      TSL L + A D DS +N+
Sbjct: 220 VHITDENDCFPEFQQSIYSRENILESIPIG------TSL-LQVLATDCDSGSNS 266



 Score = 34.3 bits (77), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 54  VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V + I D NDN P F  L Y   V E   +G  VLT T       A DKD  +NA L
Sbjct: 863 VRIFISDVNDNCPAFPHLVYETDVDEDQDVGYAVLTAT-------ATDKDEGSNAKL 912


>gi|410896278|ref|XP_003961626.1| PREDICTED: protocadherin-15-like [Takifugu rubripes]
          Length = 1746

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL  KP+  E    ++L + A    G    A  ++ + +LD N+  PYF +++Y GYV+E
Sbjct: 323 LLLLKPIHRELHISFDLVIKAEQDNGHPLPAFSNLQIEVLDENNQAPYFLEMSYHGYVNE 382

Query: 80  AAPIGALVLTNTSL--PLVIRAEDKDSE 105
           A+P+G  + TN SL  PLVI A D D E
Sbjct: 383 ASPVGTTISTNASLSAPLVIIALDNDVE 410



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 8   FAILKPALHPPY----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
           + IL+P+    Y    G +L + P  Y  + +  +  T   + G   +  V + + DRND
Sbjct: 60  WVILEPSKQALYLNSTGRVLDRDPPSYIQSIVVQVQCT-NELVGTVILHEVRIVVRDRND 118

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLT 89
           N+P FTQ  Y   VSE  P+G  + +
Sbjct: 119 NSPRFTQPRYYVAVSELTPVGTTIFS 144



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T+ PLD E    Y L V A++ A    ++   + V +LD +DN+P FTQ +Y+  +
Sbjct: 745 GAIRTEAPLDREVKGHYFLIVEASDGATDPRRSRLMLSVTVLDVDDNSPIFTQQSYSASL 804

Query: 78  SEAAPIGALVLTNTSL 93
           +E +P    +L  T+L
Sbjct: 805 AENSPKHTPILQLTAL 820



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            G++ T K LDYE++  + L V A ++  A +            VI+ I D ND+ P FT+
Sbjct: 1067 GLVSTAKGLDYESSSSFVLKVEADSIEVASSNLRVPSKTNTAKVIIDIRDENDHQPVFTR 1126

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G V+E A       T TS+ L ++A D+D+
Sbjct: 1127 SLYIGGVAEDAK------TFTSV-LQVQALDRDT 1153



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATR----IYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF 68
           L P  G L   K LDYE        Y  +V A +  G     + SV V I D ND +P F
Sbjct: 847 LDPATGELSALKVLDYEGFSESDPSYTFTVEAVDAGGTMPPGLASVTVRITDMNDFSPVF 906

Query: 69  TQLNYTGYVSEAAPIGALVLT 89
            +  Y G V+  A  G +V+T
Sbjct: 907 GRSLYRGMVAPNAVKGTIVIT 927



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +PLD EA   Y  ++ A++         V + +LD NDNTP F  ++Y+
Sbjct: 443 QPLDREAQDSYTFTLLASDGVQQSIPVPVTITVLDANDNTPTFANVSYS 491


>gi|21739804|emb|CAD38929.1| hypothetical protein [Homo sapiens]
          Length = 647

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 246 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 304

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 305 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 338



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 148 INPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 207

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 208 SPIAENSP--------ETVVAVFRIRDRDSGNNG 233



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 45  YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 104

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 105 VPENSPVGSMVVS-------VSARDLDTGSNG 129


>gi|301624872|ref|XP_002941722.1| PREDICTED: protocadherin Fat 2-like, partial [Xenopus (Silurana)
            tropicalis]
          Length = 1196

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQLNYT 74
            G L  +K LD+E    YNL+V AT++        VC V + +LD N+N  TPYF    + 
Sbjct: 984  GALTLQKELDFEKRSFYNLTVRATDVGYPFSHSTVCHVELEVLDVNENLHTPYFNSFVFH 1043

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETNALL-DGS 113
            G V E +P G  VL+ T+     R ED  KD E   L+ DGS
Sbjct: 1044 GSVQENSPPGTQVLSITA-----RDEDKGKDGEVRYLIRDGS 1080



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G L+   PLD E T  Y L+ T  ++   +     I  V++LD NDN P F  L Y   +
Sbjct: 822 GKLMVSSPLDRERTASYILNATVYDLGVPQKSSWKILAVNLLDANDNAPIFPSLGYCVAI 881

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E + IG  VL        +RA+D D + N 
Sbjct: 882 PEDSKIGTSVLK-------VRADDPDIDDNG 905



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G+++T   +D +    + L V A +    +   +VIV ++D N++ P FT+ +Y 
Sbjct: 462 IFPKTGLIVTNSHMDVKDQSQFQLEVIALH---GQITSTVIVDLIDCNNHAPVFTKSSYH 518

Query: 75  GYVSEAAPIGALVL 88
           G  +E  P+G+ +L
Sbjct: 519 GTFNENIPVGSRIL 532



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNY 73
           GV+  K+ LDYE T R Y L V A+++       ++   S+I++ L  NDN+P F Q+N 
Sbjct: 566 GVITNKRMLDYELTQRWYRLRVWASDLGSPFRQQSEVFISLILNNL--NDNSPMFEQVNC 623

Query: 74  TGYVSEAAPIGALVL 88
             ++     IG  V+
Sbjct: 624 NIHIPRDISIGEKVV 638


>gi|326673289|ref|XP_003199822.1| PREDICTED: protocadherin alpha-C2-like [Danio rerio]
          Length = 802

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ KK LD E   I+NL +TA +  +       S+IV +LD NDN P F + +YT  
Sbjct: 187 FADLILKKSLDREERAIHNLILTAVDGGVPARSGTASIIVRVLDTNDNAPQFDKDSYTIN 246

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E APIG+LV+        + A DKD  +N+ L
Sbjct: 247 LTENAPIGSLVVK-------LNASDKDEGSNSDL 273



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +L+P  G +  K+ ++YE  RIY++ + AT+  GA ++   C V + I D NDN P  + 
Sbjct: 290 SLNPNNGEIRVKELINYEDFRIYDMEIIATD-KGANSLTGKCKVKILITDMNDNHPEISI 348

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 349 RSVTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 382



 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 400 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 459

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 460 VMENNAPGA 468


>gi|348576486|ref|XP_003474018.1| PREDICTED: protocadherin-15-like isoform 9 [Cavia porcellus]
          Length = 1917

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 377

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 378 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 412



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 807 EENLPAGTIFLQ-------IEAKDVD 825



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|348576484|ref|XP_003474017.1| PREDICTED: protocadherin-15-like isoform 8 [Cavia porcellus]
          Length = 1897

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 303 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 362

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 363 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 397



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1050 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1110 KFYIGGVSEDARMFASVLR-------VKATDKDT 1136



 Score = 41.6 bits (96), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 481



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 792 EENLPAGTIFLQ-------IEAKDVD 810



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 540 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 599



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 829 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 888

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 889 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 917


>gi|348576490|ref|XP_003474020.1| PREDICTED: protocadherin-15-like isoform 11 [Cavia porcellus]
          Length = 1914

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 377

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 378 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 412



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 807 EENLPAGTIFLQ-------IEAKDVD 825



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|348576482|ref|XP_003474016.1| PREDICTED: protocadherin-15-like isoform 7 [Cavia porcellus]
          Length = 1868

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 399

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 400 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1016 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1076 KFYIGGVSEDARMFASVLR-------VKATDKDT 1102



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 758 EENLPAGTIFLQ-------IEAKDVD 776



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 795 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 854

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 855 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 883


>gi|348576478|ref|XP_003474014.1| PREDICTED: protocadherin-15-like isoform 5 [Cavia porcellus]
          Length = 1934

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 399

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 400 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 829 EENLPAGTIFLQ-------IEAKDVD 847



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|449267271|gb|EMC78237.1| Protocadherin Fat 4, partial [Columba livia]
          Length = 2772

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +   KPLD+EA   Y LSV AT+  G  A+C V+V ++D NDN P     +++
Sbjct: 418 IDPTSGEIKLTKPLDFEAAEKYELSVRATDGGGLSAICKVLVEVVDVNDNAPELVVSSFS 477

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E A  GA+V        +    D+DS  N 
Sbjct: 478 SPLPENALPGAVV-------ALFAVRDRDSGANG 504



 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KKP+DYE T+ Y + V AT+  G  A C V V + D NDN P     + T  +SE
Sbjct: 104 GEIRIKKPVDYEETKTYEIDVQATDGGGLSAHCKVEVQVEDVNDNAPEVIITSLTSTLSE 163

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           AAP   +V        +    D+DS  N 
Sbjct: 164 AAPPNTVV-------ALFNLRDRDSGDNG 185



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   KPLD+EA + Y LSV A++  G  A+C V+V + D NDN P     +++
Sbjct: 2030 IDPVSGEIRLSKPLDFEAAQKYELSVRASDGGGLSAICKVLVEVGDVNDNAPELVVSSFS 2089

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E A  G +V        +   +D+DS  N 
Sbjct: 2090 SPLPENALPGTVV-------ALFNVKDRDSGANG 2116



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 30/47 (63%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            G +   KPLD+EA   Y LSV AT+  G  A+C V+V ++D NDN P
Sbjct: 2461 GEIKITKPLDFEAAERYELSVQATDGGGLSAICKVLVEVVDVNDNAP 2507



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +  +KPLD+E    + LSV AT+  G  A+C V+V ++D NDN P     +++  + E
Sbjct: 1173 GEIKLRKPLDFETAENHELSVRATDGGGLSAICKVLVEVVDVNDNAPELVVSSFSSPLPE 1232

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             A  G +V        +   +D+DS  N 
Sbjct: 1233 NALPGTVV-------ALFNVKDRDSGANG 1254



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   KPLD+E    + LSV AT+  G  A+C V+V ++D NDN P     +++
Sbjct: 1599 IDPFSGEIKLTKPLDFETAENHELSVRATDGGGLSAICKVLVEVVDVNDNAPELVVSSFS 1658

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E A  G +V        +   +D+DS  N 
Sbjct: 1659 SPLPENALPGTVV-------ALFNVKDRDSGANG 1685



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +   KPLD+E    + LSV AT+  G  A+C V+V ++D NDN P     +++
Sbjct: 632 IDPFSGEIKLTKPLDFETAENHELSVRATDGGGLSAICKVLVEVVDVNDNAPELVVNSFS 691

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E A  G +V        +   +D+DS  N 
Sbjct: 692 SPLPENALPGTVV-------ALFNVKDRDSGANG 718



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 3   HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LD 60
           HPV+ F     ++    G++   +PLDYE   ++  +V A +        +  +HI  LD
Sbjct: 304 HPVESFV----SVDAETGIVRALRPLDYEEAEMH-FTVIAMDGGVLPRSGTTQIHIVVLD 358

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
            NDN P FTQ  Y G V E AP G++VL+
Sbjct: 359 VNDNAPVFTQDQYVGKVLENAPEGSVVLS 387



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 8/77 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-----VHI--LDRNDNTPYFTQLN 72
            G L   +  DYE  R   L V A +  GA A+ S +     +HI  LD NDN P FTQ  
Sbjct: 2350 GALYALRSFDYEEVREVGLWVRAED-GGAPALSSNVSGTTQIHIIVLDVNDNAPVFTQDR 2408

Query: 73   YTGYVSEAAPIGALVLT 89
            Y G V E AP G++VL+
Sbjct: 2409 YVGKVLEIAPEGSVVLS 2425



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+ KKPLD E       S+ A +           + + +LD NDN+P F Q  Y G 
Sbjct: 1065 YVELVLKKPLDREEQSEMGFSLIAVDGGSPPRSGTTQIRIIVLDVNDNSPIFAQDLYVGQ 1124

Query: 77   VSEAAPIGALVLT 89
            V E AP G++VL+
Sbjct: 1125 VLENAPEGSVVLS 1137



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 52/106 (49%), Gaps = 12/106 (11%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
            QL   L+PA +  Y  L+T   LD E T  Y LSVTA + AG+  + +     V I D N
Sbjct: 1694 QLSFSLRPA-YKNYYELVTMSELDREETAQYILSVTAAD-AGSPPLTTTQTFTVDISDVN 1751

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            DN P F Q +YT YV E           T L   I A D D+ +NA
Sbjct: 1752 DNAPVFNQTSYTMYVRENN-------VPTVLVGAISAADADTGSNA 1790



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
            QL   L+PA +  Y  L+T   LD E T  Y L VTAT+ AG+  + +     V I D N
Sbjct: 2551 QLSFSLRPA-YKNYYELVTVSTLDREETAQYILIVTATD-AGSPPLTTTQTFTVDISDVN 2608

Query: 63   DNTPYFTQLNYTGYVSE 79
            DN+P F+Q +YT YV E
Sbjct: 2609 DNSPVFSQTSYTMYVRE 2625



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 11/90 (12%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T + LD E    YN++V A +  G+ A+    ++ V +LD NDN P FTQ  YT  +S
Sbjct: 209 LVTSEALDREQVAEYNVTVRARD-EGSPALSVSKTLFVRLLDVNDNAPTFTQTIYTMVLS 267

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P G      TSL   + A D D+  NA
Sbjct: 268 ENEPAG------TSLGR-LNATDADAGKNA 290



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAK----AVCSVIVHIL 59
           QL   L+PA +  Y  L+T   LD E T  Y L+     T M G          + + +L
Sbjct: 513 QLSFSLRPA-YKNYYELVTVSELDREETAQYILTPENGLTAMDGGSPPRSGTTQIRIIVL 571

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
           D NDN+P F Q  Y G V E+AP G++VL+
Sbjct: 572 DVNDNSPIFAQDLYVGQVLESAPEGSVVLS 601



 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 20/110 (18%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
           QL   L+PA +  Y  L+T   LD E T  Y LSVTA + AG+  + +     V I D N
Sbjct: 727 QLSFSLRPA-YKNYYELVTVSMLDREETAQYILSVTAAD-AGSPPLTTTQTFTVDISDVN 784

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV----IRAEDKDSETNA 108
           DN P F Q +Y  YV E            S+P V    + A D D+ +NA
Sbjct: 785 DNAPVFNQTSYVMYVHE-----------NSVPTVLVGAVSAADADTGSNA 823



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 50/109 (45%), Gaps = 18/109 (16%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRND 63
            QL   L+PA +  Y  L+T   LD E T  Y LSVTA ++         +  V I D ND
Sbjct: 1263 QLSFSLRPA-YKNYYELVTVITLDREETAQYILSVTAADVGSPPLTTTQTFTVDISDVND 1321

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV----IRAEDKDSETNA 108
            N P F Q +Y  YV E            S+P V    + A D D+ +NA
Sbjct: 1322 NAPVFNQTSYVMYVHE-----------NSVPTVLVGAVSAADADTGSNA 1359



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 58   ILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            +LD NDNTP FTQ  Y G + E AP G++VL
Sbjct: 1537 VLDVNDNTPVFTQDRYVGRILENAPEGSVVL 1567



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 56   VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            V +LD NDNTP FTQ  Y G V E AP G++VL
Sbjct: 1966 VVVLDVNDNTPVFTQRVYFGKVLENAPEGSVVL 1998



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
            QL   L+PA +  Y  L+T   LD E T  Y LSVTA + AG+  + +     V + D N
Sbjct: 2125 QLSFSLQPA-YKNYYELVTVSTLDREETAQYILSVTAAD-AGSPPLTTTQTFTVDVSDVN 2182

Query: 63   DNTPYFTQLNYTGYVSE 79
            DN P F Q  Y  YV E
Sbjct: 2183 DNAPVFNQTLYVMYVRE 2199



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 13   PALHPPYGVL-LTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFT 69
            P   PP   + +  +  D E     N++V A +    A   C+V+ + +LD NDN P F 
Sbjct: 2232 PTEQPPCSCISVNSENGDVEELSDNNVTVRAADGESPALWSCTVLWLRVLDVNDNAPVFA 2291

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  Y+  V E    GALVL        +RA D D   NA
Sbjct: 2292 EARYSARVPENNAAGALVLR-------VRAWDADWGQNA 2323


>gi|363738275|ref|XP_425119.3| PREDICTED: neural-cadherin-like [Gallus gallus]
          Length = 2503

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
           ++HP  GVL T +  D E  R Y ++VTAT+ A      +C + V ILD+NDN P F   
Sbjct: 462 SIHPDTGVLTTVQVFDREKQREYPVTVTATDQAAEPLIGICQINVVILDQNDNDPRFENT 521

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +Y  ++ E   +G      TS  L + A D D  +NA++
Sbjct: 522 HYEYFLREDTRVG------TSF-LRVTAHDDDYSSNAVI 553



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  L P  +     +L  + LDYE T+ + L V A N+A     A  ++ ++I D 
Sbjct: 666 PVRFY--LTPNRYDGSASILVAELLDYETTKNFLLRVRAQNVAAVPLAAFTTIYINITDV 723

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVL 88
           NDN P+FT   Y   V+E A IG  V+
Sbjct: 724 NDNVPFFTSSIYEASVTEGAGIGTFVI 750



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            + P  G +   +PLDYE T++Y + + A++    +     I++++++ND +P F+   Y
Sbjct: 894 GVQPETGAIFIAQPLDYEETKMYEIHLLASD-GKWEDYAVTIINVMNKNDESPVFSINEY 952

Query: 74  TGYVSE 79
            G + E
Sbjct: 953 YGSIIE 958



 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL--NYTG 75
            G +   K LD E   ++   V AT+  G        VI+++ D NDN P FT +  +  G
Sbjct: 1004 GSIYAHKMLDREERALWRFVVLATDEGGEGLTGFADVIINVWDINDNAPVFTCMPDDCNG 1063

Query: 76   YVSEAAPIGALVL 88
             V E +P   LV+
Sbjct: 1064 SVFENSPADTLVM 1076



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 19  YGVLLTKKPLDYEA-TRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           +G +   K LDYE    +Y   + A +          +V +HI + ND  P F+Q  Y  
Sbjct: 250 HGTIFPAKELDYERPNHLYEFIIMAVDKGEDPKTGTATVRIHISNVNDEAPEFSQAIYRS 309

Query: 76  YVSEAAPIGALVLTNTSL 93
           +VSE A    LV T ++L
Sbjct: 310 FVSEDAGPNTLVATVSAL 327



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 54  VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V V I D NDN P FTQ  Y   V E   +G+ ++T       + A D+D  TNA L
Sbjct: 831 VRVFITDVNDNKPVFTQSVYEVNVVEDQDVGSTIIT-------VSANDEDEGTNAKL 880



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
            S P++ F I +      +G ++    LD E  + Y+L V A++          +V++++L
Sbjct: 1319 SDPMRQFVIDQ------HGHVIVANKLDREVIQKYSLIVQASDQGTPAETGSATVLINLL 1372

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P F +  Y   V E      +V  N S  L + A D DSE N 
Sbjct: 1373 DVNDNGPRF-EAPYLPVVWENMLSPEIVHMNHSSKL-LHAYDPDSEENG 1419


>gi|348576476|ref|XP_003474013.1| PREDICTED: protocadherin-15-like isoform 4 [Cavia porcellus]
          Length = 1939

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 399

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 400 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 829 EENLPAGTIFLQ-------IEAKDVD 847



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|348576470|ref|XP_003474010.1| PREDICTED: protocadherin-15-like isoform 1 [Cavia porcellus]
          Length = 1944

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 404

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 405 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 439



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDKDT 1178



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 834 EENLPAGTIFLQ-------IEAKDVD 852



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|348576474|ref|XP_003474012.1| PREDICTED: protocadherin-15-like isoform 3 [Cavia porcellus]
          Length = 1937

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 399

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 400 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 829 EENLPAGTIFLQ-------IEAKDVD 847



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|348576472|ref|XP_003474011.1| PREDICTED: protocadherin-15-like isoform 2 [Cavia porcellus]
          Length = 1681

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 404

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 405 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 439



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDKDT 1178



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 834 EENLPAGTIFLQ-------IEAKDVD 852



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|348576480|ref|XP_003474015.1| PREDICTED: protocadherin-15-like isoform 6 [Cavia porcellus]
          Length = 1676

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 399

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 400 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G + L        I A+D D
Sbjct: 829 EENLPAGTIFLQ-------IEAKDVD 847



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|449284111|gb|EMC90692.1| Neural-cadherin [Columba livia]
          Length = 2537

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTP 66
           A L  ++ P  GV+ T +  D E  R Y LSVTAT+ A      VC V V I D NDN P
Sbjct: 487 ASLGFSIDPDTGVITTTQSFDREQQREYTLSVTATDQAQEPLIGVCQVTVLIADVNDNDP 546

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            F    Y  ++SE  P+G      TS  L + A D D   NA +
Sbjct: 547 KFENSRYQYFLSEDTPVG------TSF-LRVAAHDSDQGANAAI 583



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  LKP        LL  +PLD+E T+ + L+V A N+A     +  +V V++ D 
Sbjct: 696 PVRFY--LKPNRADGSASLLVAEPLDFETTKFFTLTVRAQNVAMTPLASFTTVCVNVTDV 753

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           NDN P+F   NY   V E A +G  V+   ++ L
Sbjct: 754 NDNVPFFVSSNYEVSVPEGADVGTSVVQVLAMDL 787



 Score = 41.2 bits (95), Expect = 0.090,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +   +PLDYE  + Y L + A++         +I++++++ND  P F Q  Y 
Sbjct: 925 VEPEVGTVFITQPLDYEQEQRYELRLVASDGKWENHTL-IIINVINKNDEAPVFLQNEYQ 983

Query: 75  GYVSE 79
           G V E
Sbjct: 984 GSVLE 988



 Score = 38.5 bits (88), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 15/111 (13%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATR-IYNLSVTATNMAGA-KAVCSVIVHI 58
           +++P  LF + + +     G L    P+DYE+   +Y+L + A         V  V+VHI
Sbjct: 166 LTNPSGLFRVRQES-----GELSLTHPVDYESEHHLYHLLLRAMEAESTLSTVTEVMVHI 220

Query: 59  LDRNDNTPYFTQLNYT-GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D ND +P F    Y+   + E  P+G      TSL L + A D DS +N+
Sbjct: 221 TDENDCSPEFQHSIYSRDNIPETIPVG------TSL-LQVLATDCDSGSNS 264



 Score = 36.2 bits (82), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 20   GVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY-TGY 76
            G +  +K +D+E    R++NL+V A +M    ++   ++++ D ND+ P F   +Y    
Sbjct: 1257 GFIRLRKRIDFEKPHERVFNLTVKAEDM-DFFSITHCVIYVEDSNDHAPVFYPQSYEVAA 1315

Query: 77   VSEAAPIGALVLTNTSLPL 95
            + E AP+G  V+  +++ L
Sbjct: 1316 LVEDAPVGTKVVQVSAVDL 1334



 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL---NYT 74
            G +   K LD E    +   V AT+  G        VI+ + D NDN P F  +    + 
Sbjct: 1034 GEISANKRLDREKRSTWRFLVLATDERGEGLTGFADVIIEVRDVNDNAPLFLCVLDGCFM 1093

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G+++E +P    V+  T++ L    +D  + TNA+L
Sbjct: 1094 GHIAEDSPADTSVIEMTAVDL----DDPKAGTNAVL 1125



 Score = 35.0 bits (79), Expect = 6.4,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            LD E    Y + V A +  G     +  + + D ND+ P F Q  YT +VSE A I    
Sbjct: 1158 LDREKEDKYLVVVEARDGGGLTGTGTATILVTDVNDHAPVFLQRIYTAFVSENASI---- 1213

Query: 88   LTNTSLPLVIRAEDKDSETNAL-----LDGSTN 115
              NT +  V+   D+D   NA+     LDG  +
Sbjct: 1214 --NTEVA-VVSVVDRDEGENAMVTFSILDGDND 1243



 Score = 34.7 bits (78), Expect = 8.4,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 19  YGVLLTKKPLDYE-ATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           +GV+ + + L++E A  +Y   V A +          SV + + + ND  P F+Q  Y  
Sbjct: 280 HGVINSNQRLNFERANHMYEFVVIAVDKGHPPRTGTASVRIRMANVNDEAPVFSQSVYRT 339

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
           ++SE A    LV T       +RA+D D +
Sbjct: 340 FLSEDAGPSTLVAT-------VRAKDPDGD 362


>gi|348576488|ref|XP_003474019.1| PREDICTED: protocadherin-15-like isoform 10 [Cavia porcellus]
          Length = 1537

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDIHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 399

Query: 73  YTGYVSEAAPIGALVL--TNTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N S PL I A DKD E
Sbjct: 400 YQGYILESAPVGATICDSMNLSTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQFYTFSITAFDGVQESKPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G + L        I A+D D   N
Sbjct: 829 EENLPAGTIFLQ-------IEAKDVDLGAN 851



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A      +++C+V V +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRQSICTVYVEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGQLSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|426231049|ref|XP_004009560.1| PREDICTED: protocadherin gamma-B1 [Ovis aries]
          Length = 806

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y L V A +     A C+V + I+D NDN P  T ++++
Sbjct: 282 LNPNTGDITTNGTLDFEETSRYMLGVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 341

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+ +D+DSE N L+
Sbjct: 342 NQIPEGSDLGTVI-------ALIKVQDQDSEQNGLV 370



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E    YN+++ AT+       +  S+ +HI D NDN P F Q  Y  +
Sbjct: 389 YYKLVIDGALDREQKAEYNVTIAATDKGKPALSSTKSITLHIRDVNDNAPVFHQATYVVH 448

Query: 77  VSEAAPIGALV 87
           V+E  P GA +
Sbjct: 449 VAENNPPGASI 459



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    ++L +TA  M G     S    + + + D NDN P F+Q  Y 
Sbjct: 179 YPELLLEKPLDREQQNSHHLILTA--MDGGDPPLSGTTLIRIQVTDANDNAPVFSQDTYR 236

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 237 VSLQENVPRGTSVLQ-------VMATDQDEGINA 263


>gi|194758587|ref|XP_001961543.1| GF15021 [Drosophila ananassae]
 gi|190615240|gb|EDV30764.1| GF15021 [Drosophila ananassae]
          Length = 5182

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++ ++PLD++ T+ Y+L++T  ++      AV  + + + D NDN P F Q  Y GY+
Sbjct: 3288 GGIVIRQPLDFDTTQEYHLNITVQDLGFQPLSAVAMLTIILTDVNDNPPVFAQKEYHGYL 3347

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E  PIG  V           A DKDS  NA++
Sbjct: 3348 AENKPIGTFVFQAV-------ATDKDSPRNAII 3373



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            +L+P  G+L     LD E    Y L++TA +      +A   ++V ILD NDN+P F   
Sbjct: 2227 SLNPTDGLLRVTDALDRELRASYLLNITARDRGEPPQEAETQLLVRILDENDNSPIFDPK 2286

Query: 72   NYTGYVSEAAPIGALVL 88
             Y+  V+E A IGA+VL
Sbjct: 2287 QYSASVAENASIGAMVL 2303



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            +L+P  G+L     LDYE  + Y L V A +        ++ ++  +LD NDN P F  +
Sbjct: 1972 SLNPQTGMLTLTSRLDYEEVQHYILLVQAQDNGQPSLSTTITIYCNVLDLNDNAPIFDPM 2031

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y+  V E APIG  V +       + A+D DS  N L+
Sbjct: 2032 SYSSEVFENAPIGKEVAS-------VSAKDIDSGNNGLV 2063



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 17/108 (15%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            ++F I       P G L  K  LD E    Y L+V+  + AG  +  S   V++H++D N
Sbjct: 1096 RIFGIF------PDGYLFVKALLDREVRDYYALTVSCRD-AGEPSRSSEVPVVIHVIDEN 1148

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            DN P FT   +T  + E AP    V   T+L       D+D   NA L
Sbjct: 1149 DNAPQFTNSTFTFSIPENAPADTFVGKLTAL-------DRDIGRNAEL 1189



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L V A +    +     SV++H+LD+NDN P FT+L ++  V
Sbjct: 2867 GEIHTTMRLDREELGEYALVVEAVDQGRPQLTGTSSVLLHLLDKNDNPPKFTRL-FSLNV 2925

Query: 78   SEAAPIGALVLTNTSLPL 95
            +E A IG+ V+  TS  L
Sbjct: 2926 TENAEIGSFVIRVTSSDL 2943



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G + T   LD E T  +NL + A +M       S  V I   D NDN P FT+    GY+
Sbjct: 3605 GEITTAAHLDREETAHFNLVIGAIDMGLPPQTGSATVRIDLEDVNDNAPTFTREGLMGYI 3664

Query: 78   SEAAPIGALVLT 89
            SE  P G  ++T
Sbjct: 3665 SENEPSGTSIMT 3676



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            GV+   + LD E      L+V A N    +        VI+ I D ND  P F +  Y+ 
Sbjct: 3498 GVIHVARHLDRETQNRVALTVLAKNYGSIRGNDTDEAQVIISIQDGND-PPEFIKRQYSS 3556

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             VSEAA IG  V+T       ++A DKD
Sbjct: 3557 AVSEAAAIGTKVIT-------VKAVDKD 3577



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 26   KPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            KPLD E    Y L++ A +           V V + D NDN P F   +Y   V E  P 
Sbjct: 2452 KPLDRERQSEYILTLVAMDTGSPPLTGTGVVRVEVQDMNDNGPVFELQSYHAVVEENLPA 2511

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G LVL  T       A DKD   NA L
Sbjct: 2512 GTLVLHPT-------ATDKDEGLNARL 2531



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQ 70
           ++ P  G+++T  PLD E +    LS++A +  G     A   + V +LD ND  P F Q
Sbjct: 551 SMDPLTGLIVTAGPLDREVSDSVELSISARD-GGPNPKFAYTQLKVTVLDENDEAPQFAQ 609

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +    ++E AP   LV        V+ A D D  TN 
Sbjct: 610 SHLNVTLTENAPAQTLV-------AVLTATDHDQGTNG 640



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E+   ++L V A + A      A  ++ + +LD NDN P FTQ +    
Sbjct: 1338 GQLTLARRLDRESQEAHHLVVVARDAALKDSLSANTTITIVVLDENDNAPEFTQSSSEVS 1397

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E +P G  ++         RA D D   N+
Sbjct: 1398 VLETSPTGTELMR-------FRASDADQGVNS 1422



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 20   GVLLTKKPLDYEAT-RIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T   LD EA   +Y + V A  + G     S  V V +LD+ND+ P F    +   
Sbjct: 1773 GILSTAAELDREAGPDVYEVEVYAIALGGQPRTSSTKVRVTVLDKNDSPPQFLDSPFLYN 1832

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDS---ETNALLDG 112
            VSE   IG  + T       +RA D DS    T  L+DG
Sbjct: 1833 VSEDLEIGHTIAT-------LRAHDPDSLGTVTFKLMDG 1864



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G + +    DYE  R Y L + A N     ++  ++ +HIL  N+  P+F Q  +   VS
Sbjct: 3394 GSIFSAVSFDYEERRTYTLQLKAKNPDTIMESYATLFIHILGVNEFYPHFVQPVFHFDVS 3453

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
            E + +G  V         ++A DKDS  +     LL G++N
Sbjct: 3454 ETSAMGTHV-------GAVQATDKDSGEDGRVYYLLVGASN 3487



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 21/100 (21%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG-------AKAVCSVIVHILDRNDNTPYFTQLN 72
            GV+ T + +D EA   + L+V AT+ A        A+ + +VIV   D NDN P F  +N
Sbjct: 1553 GVIYTLRDIDREAIDTFRLTVVATDRAQPSDLQLHAEKLVTVIVE--DINDNAPVFVSMN 1610

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIR--AEDKDSETNALL 110
                         L +T+     V+R  A D DS +N L+
Sbjct: 1611 ----------AAMLPMTDQGPQQVMRVHARDADSSSNGLV 1640



 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTP 66
            I++  +    G++ T  PLD E T +Y+L++ A + +  +   S +   + + D NDN P
Sbjct: 2540 IMRFHIDSQTGIITTSMPLDREETAVYHLTLMAQDSSVTEPRASSVNLTIQVGDVNDNAP 2599

Query: 67   YFTQLNYTGYVSEAAPIGALVL 88
             F    YT  + +    G  V 
Sbjct: 2600 SFDASRYTVTLPDRTSTGDFVF 2621



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L T++ LD E+T  Y + V A +        +  +V +++ D NDN P F   +Y   
Sbjct: 665 GQLTTRRFLDRESTARYEIPVIARDQGAPTPQSSTATVWLNVADVNDNDPEFYPQHYIYT 724

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           + + +           + L + A D+D   NAL++
Sbjct: 725 LGDDSRNDGHENGEGKILLHVTASDRDEGDNALIE 759



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28  LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    YNL+V A +           +I+ + D ND+ P F +  Y+  +SE A  G+
Sbjct: 460 LDREEIGKYNLTVVAMDKGTPARTTTAHLIIDVNDVNDHEPVFEKSEYSAVLSELASKGS 519

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            V +       I A D D+  NA
Sbjct: 520 YVTS-------ITATDGDTGVNA 535



 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFT---QLNY 73
           G + T   LD E    + L++ A +M+ +  V   C V + ++D NDN P F        
Sbjct: 892 GRIATATSLDREVQSHFRLTILARSMSSSSFVYGTCGVNIAVIDLNDNAPVFALDRDSEP 951

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           T ++ E A +G  V        + R  D+D+  N+ +
Sbjct: 952 TIWLPEDAAVGQEV-------YLSRVRDRDAGVNSRI 981



 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRND 63
           +L     P+    Y  L TK  LD E+   Y L+++A +           V V ILD ND
Sbjct: 215 RLATTTNPSGDTSYLHLETKGNLDRESRGSYQLNISARDGGSPPRFGFLQVNVTILDVND 274

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLT 89
           N P F   +Y   ++E A  G  V+T
Sbjct: 275 NPPIFDHSDYNVSLNETALPGTPVVT 300


>gi|148678186|gb|EDL10133.1| mCG133388, isoform CRA_p [Mus musculus]
          Length = 492

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + +K P+D+E  R Y +++ A +  G  + C V+V ILD NDN P     + +  ++E
Sbjct: 300 GEIKSKGPIDFETKRTYTMNIEAKDGGGMASECKVVVEILDENDNAPEVVFTSVSNSITE 359

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G +V        + +  DKDSE N 
Sbjct: 360 DAEPGTVV-------ALFKTYDKDSEENG 381



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++ AT+       +  SV +H+ D NDN P F Q +Y   
Sbjct: 402 YYKLVTDGILDREQTPEYNVTIIATDKGKPPLSSSTSVTLHVGDINDNAPVFHQTSYLIQ 461

Query: 77  VSEAAPIGALV 87
           V+E  P GA +
Sbjct: 462 VAENNPPGASI 472



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E      L +TA +  G + V      + + + D NDN P F+Q  Y   +
Sbjct: 195 LVLEKPLDREKQSSQLLVLTAVD--GGEPVLTGTAQIQIEVTDANDNPPVFSQSTYKVSL 252

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G  VLT       + A D+D   NA
Sbjct: 253 REDMAAGTSVLT-------VIATDQDEGVNA 276


>gi|156368055|ref|XP_001627512.1| predicted protein [Nematostella vectensis]
 gi|156214424|gb|EDO35412.1| predicted protein [Nematostella vectensis]
          Length = 1677

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           ++TKKPLD E T  Y L++TAT+         C + + ILD ND+ P FTQ +Y G ++E
Sbjct: 158 VITKKPLDRETTDFYQLNITATDRGTPALMGYCLINITILDENDHAPVFTQNSYLGSIAE 217

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               G  +L        + A D+DS +N 
Sbjct: 218 NTKPGVSILR-------VSAADRDSGSNG 239



 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G++ T KPLD E      +++TA +   A    S  V V I+D NDN P F + +Y G +
Sbjct: 480 GLVTTAKPLDREQVSSVTITITAQDHGSAPKTGSTTVTVTIIDGNDNKPRFMKSSYKGTI 539

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE A IGA VL        + A D DS  N  +
Sbjct: 540 SEGASIGATVLQ-------VSATDVDSGDNGRI 565



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   K LD E T  YNL V AT+ + A   +   + + + D ND  P F + +YT  +
Sbjct: 1214 GELHLSKTLDRETTSSYNLVVKATDASNANLYSTAKIEITVGDSNDQRPVFPESDYTVNI 1273

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E A IG+LV+        + A DKD   N L+
Sbjct: 1274 TEDALIGSLVIN-------LNASDKDIGQNGLI 1299



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLN 72
           L+   GVL TK  LD E   +Y+ +V A +    + + SV V   I D NDN P F  + 
Sbjct: 582 LNTQTGVLWTKSQLDRETKSLYSFTVLAKDHGDPQLMSSVKVELTISDINDNAPVFYPVE 641

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y   + E  P G L        L + A D D  TNA++
Sbjct: 642 YFASIMENEPPGKL--------LQVTATDADEGTNAVI 671



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 25  KKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           +KPLD E    YNL++  T+        +  V++ + D NDN+P FT   YT  +SE A 
Sbjct: 380 QKPLDRELVPFYNLTLNVTDKGVPSRSTLGFVLIDVTDVNDNSPAFTSNAYTANISELAQ 439

Query: 83  IGALVL 88
            G+ VL
Sbjct: 440 NGSYVL 445



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+  K LD+E T++Y L++TA +  +    +  +V V++LD NDN P F     T  V
Sbjct: 1319 GRLIVAKSLDFETTQLYELTITAQDHGLIPLSSTVNVTVNVLDVNDNAPLFPTQPVTLTV 1378

Query: 78   SEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
             E          NT  P+    A D+D+ TNA
Sbjct: 1379 RENV--------NTGFPVGRCTASDRDTGTNA 1402



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
           L    GV+ TK+ LD+E    Y  +V A++        + +V +++LD NDN+P      
Sbjct: 258 LDSSTGVIRTKQNLDFEVKNSYTFNVIASDGGVPSKNDLATVTINVLDTNDNSPQLKITY 317

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +  + A      L NT++  ++   DKDS TN+
Sbjct: 318 LPPHNGDKAIRSENSLINTNIAYIL-VTDKDSNTNS 352


>gi|18087745|ref|NP_291058.1| protocadherin gamma subfamily B, 8 precursor [Mus musculus]
 gi|13876358|gb|AAK26099.1| protocadherin gamma B8 [Mus musculus]
 gi|187952347|gb|AAI39100.1| Protocadherin gamma subfamily B, 8 [Mus musculus]
 gi|223461086|gb|AAI39101.1| Protocadherin gamma subfamily B, 8 [Mus musculus]
          Length = 931

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + +K P+D+E  R Y +++ A +  G  + C V+V ILD NDN P     + +  ++E
Sbjct: 300 GEIKSKGPIDFETKRTYTMNIEAKDGGGMASECKVVVEILDENDNAPEVVFTSVSNSITE 359

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G +V        + +  DKDSE N 
Sbjct: 360 DAEPGTVV-------ALFKTYDKDSEENG 381



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++ AT+       +  SV +H+ D NDN P F Q +Y   
Sbjct: 402 YYKLVTDGILDREQTPEYNVTIIATDKGKPPLSSSTSVTLHVGDINDNAPVFHQTSYLIQ 461

Query: 77  VSEAAPIGALV 87
           V+E  P GA +
Sbjct: 462 VAENNPPGASI 472



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E      L +TA +  G + V      + + + D NDN P F+Q  Y   +
Sbjct: 195 LVLEKPLDREKQSSQLLVLTAVD--GGEPVLTGTAQIQIEVTDANDNPPVFSQSTYKVSL 252

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G  VLT       + A D+D   NA
Sbjct: 253 REDMAAGTSVLT-------VIATDQDEGVNA 276


>gi|90085375|dbj|BAE91428.1| unnamed protein product [Macaca fascicularis]
          Length = 545

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  +LKP L   Y  L+T++PLD E    YN+++T T++     K   S+ V + 
Sbjct: 158 SIPDNLPFVLKPTLKNFY-TLVTERPLDRETRAEYNITITVTDLGTPRLKTQQSITVQVS 216

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 217 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 258



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 73  GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 132

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 133 NAP--------ETVVSIFRIRDRDSGENG 153


>gi|301621400|ref|XP_002940043.1| PREDICTED: hypothetical protein LOC100490327 [Xenopus (Silurana)
            tropicalis]
          Length = 4900

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 7/92 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++TK+ LD+E T++Y +SV A +  G  +   V++  LD NDN P  +  + T  +SE
Sbjct: 1920 GAIMTKENLDFEKTKLYEISVQAKDGGGLVSHAKVLIQTLDENDNAPEISVTSITTPISE 1979

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             +P G +V        +I A D DS  N  +D
Sbjct: 1980 DSPSGTVV-------ALIEAHDVDSGENGEVD 2004



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +++P  G +  +K LDYEAT+ Y L++ A +  G  A C V+V ++D NDN P   ++N+
Sbjct: 291 SINPFNGEIKIQKHLDYEATQNYELAIQAKDGGGLVAHCKVLVEVMDENDNEP---EINF 347

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
               S   PI    +  T + L I   D+DS  N  +D
Sbjct: 348 ASLFS---PIPEHSIAGTVIAL-IEVHDQDSGENGEVD 381



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++P  G ++TK  LD+E  + Y ++V A +  G  +   V++ ILD NDN P  +  + 
Sbjct: 2754 AINPQSGEVITKDILDFEKMKNYEIAVQAKDGGGLISHAKVLIQILDENDNPPEVSLTSI 2813

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            T  VSE +  G +V        +IRA D D   NA +D
Sbjct: 2814 TNPVSEESAPGTVV-------ALIRAHDPDYGENAEVD 2844



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A++   G + TK+ +D+E T+ Y +SV A +  G  +   V++ I+D NDN P  +  + 
Sbjct: 3571 AINAISGEIKTKENIDFEKTKYYEISVQARDGGGLVSHAKVLIEIIDENDNIPEISVTSV 3630

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            T  +SE +P G +V        +I A D DS  N  +D
Sbjct: 3631 TTAISEDSPSGIVV-------ALIVAHDLDSGENGEMD 3661



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +++   G + TK+ LD+E T+ Y +SV A +  G  +   V++ ILD NDN P  +  + 
Sbjct: 4389 SINSETGEIKTKENLDFEKTKNYEISVQAKDGGGLVSHAKVLIQILDENDNAPEISVTSV 4448

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            T  VSE +  G +V        +I+A D DS  N  ++
Sbjct: 4449 TTPVSEDSAPGTVV-------ALIKARDLDSGINGEVE 4479



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + TK+ LD+E  + Y +SV A +  G  +   +++ I+D NDN P  T  +    +SE
Sbjct: 1119 GEVKTKENLDFEKIKHYEISVQAKDGGGLVSHAKILIQIIDENDNAPGITITSINTPISE 1178

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             +  G +V        +I+A D DS  N  +D
Sbjct: 1179 DSAPGTVV-------ALIKAHDLDSGENGEVD 1203



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYVSE 79
            ++T   LD E +  YN+++ A +          I+   + D NDN+P F +L Y  YV E
Sbjct: 1224 IVTTNSLDREKSPYYNITIQAIDRGSPPLTAKKIIRLDVSDINDNSPLFEKLTYVAYVPE 1283

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                GA + +       I+A DKD+E NA L
Sbjct: 1284 NNQPGASIYS-------IQAIDKDTEENAKL 1307



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
            L+ + PLD E   I+ L +TA +        + I+ I+  D NDN P FTQ  YT  ++E
Sbjct: 1014 LVLEAPLDRETESIHELVLTAFDGGNPVQTGTAIIKIIVSDFNDNAPIFTQEVYTVSLNE 1073

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P+ + +L        + A DKD  +N+ +
Sbjct: 1074 NIPVNSTILR-------VSANDKDEGSNSQI 1097



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            ++T   LD E    Y++++ AT+       +  ++ + + D NDN P F +  Y  Y+SE
Sbjct: 3682 IVTSSTLDREMKSHYDITIQATDKGSPPLSSRKTIRLDVSDINDNAPVFEKSTYIVYISE 3741

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                GA + +       I+A DKDSE NA L
Sbjct: 3742 NNEPGASIYS-------IQASDKDSEENAKL 3765



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSE 79
            ++T   LD E +  YN+++ A +      + + I  V I D NDN P F +L Y  YV E
Sbjct: 4500 IVTTSTLDREISSNYNITIQAKDKGSPSLIFTKILRVDISDINDNPPVFEKLMYVAYVLE 4559

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                GA + +       ++A DKD+  NA L
Sbjct: 4560 NNQPGASIYS-------VQATDKDAAENAKL 4583



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSE 79
            ++T   LD E +  Y +++ AT+        S  +  ++ D NDN P F + NY  YV E
Sbjct: 2865 IVTTGTLDREKSSHYYITIQATDKGSPPLSFSKTIRFNVSDTNDNPPVFEKRNYIAYVLE 2924

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                GA +         I A DKDSE N+
Sbjct: 2925 NNQPGASIYK-------ILATDKDSEENS 2946



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
            L+ + PLD E   I+ L +TA +        + ++ I   D NDN P F+Q  Y   ++E
Sbjct: 1815 LVLETPLDRETENIHELVLTAFDGGNLVQTGTALIRITVTDFNDNLPVFSQEVYKVSINE 1874

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              PI + +       L + A DKD   N+ +
Sbjct: 1875 NIPINSTI-------LYVSANDKDEGINSQI 1898



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+ +K LD E      L +TA++        ++++ ++  D NDN P F++  Y   V+E
Sbjct: 192 LVLEKALDREKENTLGLILTASDGGNPVKTGTLLIRVVITDANDNFPVFSKDVYKTTVNE 251

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P+ + V++       + A DKD  TNA +
Sbjct: 252 NMPVNSTVIS-------VTASDKDEGTNAQI 275



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYVSE 79
            L+ + PLD E   I+ + +TA +        + ++   I D NDN P F Q  Y   + E
Sbjct: 3472 LILEMPLDRETESIHEIVLTAFDGGSPMQTGTALIRVTITDSNDNFPIFAQEVYKVSIRE 3531

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P+ + +L        + A DKD   NA +
Sbjct: 3532 NMPLNSTILH-------VSANDKDEGINAQI 3555



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
            L+ K  LD E    Y + +TA +        + ++ I   D NDN P F+Q  Y   ++E
Sbjct: 2655 LVLKTSLDRENENFYEIVLTAFDGGNPMQTGTALIRITVTDANDNFPMFSQEIYKVSINE 2714

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P+ + V       L + A DKD   N+ L
Sbjct: 2715 NMPLNSTV-------LYVSASDKDEGINSQL 2738



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
            L+ + PL+ E   I+ + +TA +        + ++ I   D NDN P F Q  YT  ++E
Sbjct: 4290 LVLEIPLNRETESIHEIVLTAFDGGSPMQTGTALIRITVTDMNDNFPIFGQEVYTVSINE 4349

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P+ + V       L + A DKD   N+ +
Sbjct: 4350 NIPLNSTV-------LCVSANDKDQGINSQI 4373



 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTP 66
            +++P  GV+  ++  DYE  R + + + A +        SVIV I   D+NDN+P
Sbjct: 2127 SINPVTGVIYAQRSFDYEQDREFQIQIMAKDNGSPPLNSSVIVTICVTDQNDNSP 2181



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSE 79
           ++T   LD E T  YN+++ AT+    +     +  V I D NDN P F +  Y  ++ E
Sbjct: 402 IVTTNNLDRERTPFYNITILATDRGYPQRTSKKMIGVEISDVNDNAPLFIKPTYDAFLPE 461

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               GAL+ +       + A+D D   NA
Sbjct: 462 NNLPGALIYS-------LHAKDLDVGDNA 483



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSE 79
            ++T   LD E +  Y++++ A +          ++ + + D NDN P F   NY  Y+ E
Sbjct: 2025 IVTTGTLDREKSPYYSITILAMDKGSPPLTFRKTIRLDVSDINDNPPVFKYPNYLAYIPE 2084

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                GA + +       I+A D DSE NA L
Sbjct: 2085 NNQPGASIYS-------IQAIDNDSEENAKL 2108



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            +++P  GV+  ++  DYE  R + + + A +       +  +V + ++D+NDN+P     
Sbjct: 2967 SINPVTGVIYAQRSFDYEQDREFQIQIMAKDNGSPSLNSSANVRICVIDQNDNSPTILYP 3026

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               G  S    +        +L   + A D DS  NA L
Sbjct: 3027 QSDGGGSSVYELVPFSSEQGTLVTKVVAVDADSGHNAWL 3065


>gi|126290961|ref|XP_001377693.1| PREDICTED: protocadherin gamma-A2-like [Monodelphis domestica]
          Length = 816

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E    YN++VTA +  G        + +H+ D NDN P F+Q  Y+ Y
Sbjct: 401 YHSLVTDRALDREQVSEYNITVTAVDFGGPPLSTDTHIFLHVADINDNPPTFSQSAYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + + T       A D DS+ NAL+
Sbjct: 461 IQENNPRGASIYSLT-------AHDPDSQENALV 487



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G LLT + LDYE    + + V A +  G ++   + V ++D NDN P  T  + T  + E
Sbjct: 299 GELLTLQNLDYEDAEFHEMEVEAQDGLGLRSRAKIHVTVVDVNDNAPEVTITSVTSSIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP G ++        +    D+DS  N 
Sbjct: 359 NAPPGTII-------TLFHVHDRDSGKNG 380



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++PLD+E   +++  + A +           + V +LD NDN P FTQ  YT  
Sbjct: 191 YPELVLERPLDWEEEPVHHFMLIAWDRGEPVRSGTARIRVTVLDANDNAPVFTQPIYTVN 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P G ++       L++ A D D   N+
Sbjct: 251 VPENVPQGTVL-------LIVNATDADEGINS 275


>gi|397518004|ref|XP_003829190.1| PREDICTED: protocadherin beta-7 [Pan paniscus]
          Length = 793

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+++KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVSEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGNLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPY 67
           G L   + LDYEA + +   V AT+ +        +VH  +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRSSPALSSEALVHVLVLDANDNSPF 560


>gi|47219706|emb|CAG12628.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1389

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 8   FAILKPALHPPY-------GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHI 58
           F I KP  +  Y         LL  KP+  E    ++L + A    G    A  ++ + +
Sbjct: 297 FLIGKPESYTEYFSLNKTTAELLLLKPIYRELHSRFDLVIKAEQDNGHPLPAFANLQIEV 356

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           LD N+  PYF + +Y GYV+EA P+G  V TN SL  PLVI A D D E
Sbjct: 357 LDENNQAPYFLETSYHGYVNEATPVGTTVSTNASLSAPLVIVALDNDVE 405



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T+ PLD E    Y L V A++ A    ++  ++ V +LD +DN+P F+Q +Y+  +
Sbjct: 724 GAIQTEGPLDREVKGHYFLIVEASDGATDPRRSRLTLSVTVLDVDDNSPMFSQQSYSASL 783

Query: 78  SEAAPIGALVLT--------NTSLPLVIRAEDKDSE 105
           +E +P    +L         N++L   IR+E  D E
Sbjct: 784 AENSPKNTTILQLKAIDADLNSNLTYRIRSEGVDPE 819



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATR----IYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L+P  G L   K LDYEA       Y  +V AT+  G     + SV V I+D ND +P F
Sbjct: 826 LNPGTGELSVLKVLDYEAFNESDPKYTFTVEATDAGGTMPPGLASVTVRIMDMNDFSPVF 885

Query: 69  TQLNYTGYVSEAAPIGALVLT 89
            Q  Y G V+  A  G +V T
Sbjct: 886 GQSLYRGMVAPNAVKGTIVTT 906



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+ T + LDYE++  + L V A ++A A +            VI+ I D ND+ P FT+
Sbjct: 1046 GVVSTARGLDYESSSSFVLKVEADSIAVASSNLRVPSKTNTAKVIIDIRDENDHQPVFTR 1105

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G V+E A       T TS+ L ++A D+D+
Sbjct: 1106 SLYIGGVTEDAK------TFTSV-LQVQALDQDT 1132



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 8   FAILKPALHPPY----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND 63
           + IL+P+    Y    G +L + P  Y  + +  +  T   + G   +  V + + DRND
Sbjct: 54  WVILEPSKQALYLNSTGRVLDRDPPSYIQSIVVQVQCT-NELVGTVILHEVRIVVRDRND 112

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLT 89
           N P FTQ  Y   VSE  P+G  + +
Sbjct: 113 NAPRFTQPRYYVAVSELTPVGTTIFS 138


>gi|62510879|sp|Q5DRC7.1|PCDB7_PANTR RecName: Full=Protocadherin beta-7; Short=PCDH-beta-7; Flags:
           Precursor
          Length = 793

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+++KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVSEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGNLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPY 67
           G L   + LDYEA + +   V AT+ +        +VH  +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRSSPALSSEALVHVLVLDANDNSPF 560


>gi|348514377|ref|XP_003444717.1| PREDICTED: protocadherin gamma-A4-like [Oreochromis niloticus]
          Length = 597

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +     LD+E ++ Y L+V A++  G    C VI+ I D NDN P    ++++  +SE
Sbjct: 294 GEIKVAGKLDFEKSKTYQLNVQASDHGGYSDTCKVIIQITDENDNVPTIQLMSFSNSISE 353

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            +P G  +        V+  +D+DS+ N  +  S N
Sbjct: 354 DSPPGTTI-------AVLNVDDEDSDGNGAVKCSIN 382



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 20/112 (17%)

Query: 10  ILKPALH-------PPYG----VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI 58
           ILKP+ H        P G     ++ + PLD E    ++L + A++    +   +V +HI
Sbjct: 166 ILKPSDHFKLEVQNQPDGGRFVEMVLQNPLDREKEETHSLVLIASDGGEPRRSGTVRIHI 225

Query: 59  --LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             LD NDN P  ++  Y   V E +P G ++ T       + A D D   N 
Sbjct: 226 TVLDANDNAPLCSEPVYKAEVKENSPEGKVITT-------VSANDGDKGVNG 270


>gi|109079024|ref|XP_001090927.1| PREDICTED: protocadherin beta-4 [Macaca mulatta]
          Length = 795

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  +LKP L   Y  L+T++PLD E    YN+++T T++     K   S+ V + 
Sbjct: 383 SIPDNLPFVLKPTLKNFY-TLVTERPLDRETRAEYNITITVTDLGTPRLKTQQSITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 442 DVNDNAPTFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQSEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|402872803|ref|XP_003900291.1| PREDICTED: protocadherin beta-4 [Papio anubis]
          Length = 795

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  +LKP L   Y  L+T++PLD E    YN+++T T++     K   S+ V + 
Sbjct: 383 SIPDNLPFVLKPTLKNFY-TLVTERPLDRETRAEYNITITVTDLGTPRLKTQQSITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 442 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +++V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQSEFSLTLVALDGGSPPRSGTIMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|260783945|ref|XP_002587031.1| hypothetical protein BRAFLDRAFT_244702 [Branchiostoma floridae]
 gi|229272165|gb|EEN43042.1| hypothetical protein BRAFLDRAFT_244702 [Branchiostoma floridae]
          Length = 405

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTG-YVS 78
           GV++ ++PLDYE T+ Y L+V A +  G  +  +V V++ D NDN P F    Y+   +S
Sbjct: 1   GVIILRRPLDYEQTQHYVLTVQARDGGGRASSVTVYVNVKDLNDNPPVFDPDRYSADDIS 60

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
           E  P G  +LT       + A D+D   NA +D S
Sbjct: 61  EDVPAGTSILT-------VSATDRDEGPNAEMDFS 88



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 17/101 (16%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTPYFTQLN 72
           G ++T   LD E   +YNL V AT+ A        + A   +IV+  D NDN P F   N
Sbjct: 104 GTIVTAAALDREQNYLYNLVVMATDRAIPAYMRLSSTAQVEIIVN--DINDNPPRFVTPN 161

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            T  V E +P+  +V+T       IRAED D E N+ ++ S
Sbjct: 162 VTS-VYENSPVNTVVMT-------IRAEDPDEERNSYVEYS 194



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT 69
           K AL    G L     LD EAT  Y ++VTAT+       A   + +++LDRNDN P F 
Sbjct: 202 KFALDSVTGQLRVNGDLDREATPSYVVTVTATDKGRPPMSASMDLTINLLDRNDNNPVFG 261

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++Y   V E   +G      T L  V+ A D D  TN ++
Sbjct: 262 PVSYDVSVLEDVAVG------TELVQVV-AADVDEGTNGVV 295


>gi|390459361|ref|XP_002744356.2| PREDICTED: protocadherin beta-16-like [Callithrix jacchus]
          Length = 780

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  LLT+ PLD E    YN+++TAT++     K   S+ V + D NDN P 
Sbjct: 390 ILKPSVENFYR-LLTEGPLDREIRAEYNITITATDLGTPRLKTEHSITVRVSDVNDNAPA 448

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 449 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 482



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           AL+   G +   + LD+E    Y + + A++ AG    C+V + ++D NDN P  T  ++
Sbjct: 291 ALNERTGEIKIIRKLDFEKIVAYEVDIKASDRAGLSGKCTVKIQVVDINDNAPELTMASF 350

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E +P   + L           +D+DS  N 
Sbjct: 351 RSPIPENSPETTVAL--------FSIQDRDSGENG 377



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E      L++ A +  GA        V+V ILD NDN P F Q  Y  
Sbjct: 189 YPELVLHKALDREEQAELRLTLMAVD-GGAPPRTGTALVLVEILDINDNAPEFVQPLYQV 247

Query: 76  YVSEAAPIGALVLT 89
            +SE +P+ +LV T
Sbjct: 248 QISENSPLESLVAT 261



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPY 67
           G L   + LDYEA + +   V AT+          +VH  +LD NDN+P+
Sbjct: 509 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEALVHVLVLDANDNSPF 558


>gi|269995965|ref|NP_001013038.2| protocadherin beta-7 precursor [Pan troglodytes]
          Length = 793

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+++KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVSEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A PIG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGNLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPY 67
           G L   + LDYEA + +   V AT+ +        +VH  +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRSSPALSSEALVHVLVLDANDNSPF 560


>gi|355691683|gb|EHH26868.1| hypothetical protein EGK_16942 [Macaca mulatta]
          Length = 736

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  +LKP L   Y  L+T++PLD E    YN+++T T++     K   S+ V + 
Sbjct: 383 SIPDNLPFVLKPTLKNFY-TLVTERPLDRETRAEYNITITVTDLGTPRLKTQQSITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 442 DVNDNAPTFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQSEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|302128122|dbj|BAJ13482.1| protocadherin 18 [Xenopus laevis]
          Length = 676

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 14/101 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT-QL 71
           + P  G L   KP+DYE T+ Y + V A +M      A C +I++++D NDN P     L
Sbjct: 263 IDPESGQLTVIKPVDYETTKSYEIDVQAQDMGPNSIPAHCKIIINVVDVNDNKPEININL 322

Query: 72  NYTG----YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             TG    Y+SE AP+   V        ++R +DKDS  N 
Sbjct: 323 MSTGKEIAYISEGAPLDTFV-------ALVRVQDKDSGLNG 356



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    Y+L +TA +    +   S +  + I D NDN+P F + +Y   
Sbjct: 159 YAELVVIRDLDRELQSGYDLQLTAYDNGVPQRYGSSLLKISISDSNDNSPAFEKPSYVVQ 218

Query: 77  VSEAAPIGALVL 88
           + E +P+G L+L
Sbjct: 219 LPENSPMGTLLL 230


>gi|390459340|ref|XP_003732281.1| PREDICTED: protocadherin gamma-B7-like [Callithrix jacchus]
          Length = 810

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VI+ +LD NDN+P  T  + +  + E
Sbjct: 299 GSILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIIEVLDENDNSPEITIASLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++TAT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDGALDREQTPEYNVTITATDRGKPPLSSSKTITLHITDVNDNVPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+ +K LD E    ++L +TA +  GA        + + ++D NDN P F+Q  Y  
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALD-GGAPPRSGTAQIRILVIDANDNPPVFSQDVYRI 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  VL        ++A D+D   N+
Sbjct: 250 SLREDVPPGTSVLR-------VKATDQDEGINS 275


>gi|61696132|ref|NP_001013428.1| protocadherin beta-4 precursor [Pan troglodytes]
 gi|62510882|sp|Q5DRD0.1|PCDB4_PANTR RecName: Full=Protocadherin beta-4; Short=PCDH-beta-4; Flags:
           Precursor
          Length = 795

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  ILKP L   Y  L+T++PLD E +  YN+++T T++     K   S+ V + 
Sbjct: 383 SIPDNLPFILKPTLKNFY-TLVTERPLDRETSAEYNITITVTDLGTPRLKTQQSITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P F Q +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 442 DVNDNAPAFAQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|432878493|ref|XP_004073336.1| PREDICTED: uncharacterized protein LOC101171342 [Oryzias latipes]
          Length = 1626

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            LD+E +  Y +++ A +  G   VC +++ ILD NDN+P  T  +Y+G +SE +P G +V
Sbjct: 1126 LDFEVSPSYEINIQAKDPWGLVGVCKLMIEILDVNDNSPVITMASYSGKISEDSPPGTVV 1185

Query: 88   LTNTSLPLVIRAEDKDSETNA 108
                    +I  +DKDS  N 
Sbjct: 1186 -------ALISVQDKDSGKNG 1199



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y +L+T + LD E    YN+++TA + AG  ++ S   + + + D NDN P F+Q  Y  
Sbjct: 410 YYMLVTDEMLDREKQSEYNITLTAID-AGFPSLSSDAVLSIQVSDVNDNAPTFSQSEYNA 468

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  V+        I A+D D  +NA
Sbjct: 469 NILENQPVGTFVIN-------ISAQDSDEGSNA 494



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ KKPLD EA   + L +   +          S+ + +LD NDN P F+Q  Y   
Sbjct: 200 YPELVLKKPLDREAKAEHVLKIIGIDGGEPNRSGTASIHIRVLDANDNVPVFSQRVYKAS 259

Query: 77  VSEAAPIGALVLT 89
           V E + IG +++T
Sbjct: 260 VKENSAIGTVIIT 272



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 10   ILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDN 64
            +LK    P    Y  +L  K LD E    + L ++A +    +      + V +LD NDN
Sbjct: 999  VLKQHTRPDGSKYAEMLLHKALDREKQSEHALVLSAVDGGEPQMSGTVKIQVSVLDANDN 1058

Query: 65   TPYFTQLNYTGYVSEAAPIGALVL 88
             P FTQ  Y   VSE    GA++L
Sbjct: 1059 APVFTQPLYKASVSENILRGAIIL 1082



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQ-LNYTGY 76
           G L T +  DYE +  + + VTA +    +    C++ V + D+NDN P     +  +G+
Sbjct: 519 GELFTSRHFDYEQSVHFQIRVTALDRGEPQLSTTCTINVFVRDQNDNAPVILYPVQTSGF 578

Query: 77  VSE-----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E      AP G LV         + A D DS  NA L
Sbjct: 579 IAEDMVPVEAPRGYLVTK-------VVAVDADSGHNAWL 610



 Score = 38.1 bits (87), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           +DYE      L V A +  G  + C +I+ ++D NDN P     + +  V+E +  G +V
Sbjct: 316 IDYEEASSLELDVQAKDGGGQASHCKLIIDVIDMNDNKPVIEIKSVSANVAEDSKPGTMV 375



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+T++ LD E+   Y++++TAT+       +  S ++ I D NDN+P F Q  Y   
Sbjct: 1220 YYTLVTERILDRESDSKYSITLTATDEGFQPLSSKKSFVLEITDVNDNSPAFGQNVYITE 1279

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  +L        ++A D D   NA L
Sbjct: 1280 VMENNSPGVNLLQ-------VQATDPDQGQNARL 1306


>gi|126290967|ref|XP_001377705.1| PREDICTED: protocadherin gamma-A2-like [Monodelphis domestica]
          Length = 815

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E    YN++VTA +  G        + +H+ D NDN P F+Q  Y+ Y
Sbjct: 401 YHSLVTDRALDREQVSEYNITVTAVDFGGPPLSTDTHIFLHVADINDNPPTFSQSAYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + + T       A D DS+ NAL+
Sbjct: 461 IQENNPRGASIYSLT-------AHDPDSQENALV 487



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G LLT + LDYE    + + V A +  G ++   + V ++D NDN P  T  + T  + E
Sbjct: 299 GELLTLQNLDYEDAEFHEMEVEAQDGLGLRSRAKIHVTVVDVNDNAPEVTITSVTSSIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP G ++        +    D+DS  N 
Sbjct: 359 NAPPGTII-------TLFHVHDRDSGKNG 380



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+ ++ LD E   I++L +TA +  G + V S    + V +LD NDN P FTQ  YT
Sbjct: 191 YPELILERALDREDEPIHHLMLTAWD--GGEPVRSGTARIRVTVLDANDNAPVFTQPIYT 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  P G ++       L++ A D D   N+
Sbjct: 249 VNVPENVPQGTVL-------LIVNATDADEGINS 275


>gi|66773184|ref|NP_001012676.2| protocadherin 1 gamma b 2 [Danio rerio]
 gi|50881562|gb|AAT85361.1| protocadherin cluster 1 gamma 5 [Danio rerio]
          Length = 951

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE+   Y L++ A +  G    C  I+ + D NDN+P    ++++  ++E +P+G  V
Sbjct: 318 LDYESQNSYQLNINAKDKWGLSDTCKFIIDVTDENDNSPTIQLMSFSNTIAENSPVGTTV 377

Query: 88  LTNTSLPLVIRAEDKDSETNALLDGSTN 115
                   VI  ED DS  N L+  S N
Sbjct: 378 -------AVINVEDADSGKNGLVHCSIN 398



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E    YN+++  ++  G+ A  S   + V I D NDN P F    Y  
Sbjct: 412 YYSLITDDMLDRETVTEYNITILVSDQ-GSPARHSNKTLNVKISDVNDNPPKFGSDEYKT 470

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E    G  +LT       ++A D D   NA L
Sbjct: 471 FVNENNSPGVTILT-------VKANDADWGPNAQL 498


>gi|391337562|ref|XP_003743136.1| PREDICTED: protocadherin Fat 2-like [Metaseiulus occidentalis]
          Length = 1401

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 16/108 (14%)

Query: 7   LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRND 63
           +FAIL   L       + +KPLD +A  + ++ V     A     K V  V+V + D ND
Sbjct: 82  VFAILGKQL-------VLQKPLDRDAEDLASVRVQIRCEAKDQSRKKVVQVLVRVNDVND 134

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           N P FT  NYT  +SE AP+G +V  N +      A D DS  N L++
Sbjct: 135 NAPQFTSENYTTSISEEAPVGTMVFANFT------ATDSDSGVNGLVE 176



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
           A++   G + T++ LD+E+ + + + VTAT+       A   V + +LD  D  P F Q 
Sbjct: 736 AINGANGSIYTRRALDFESEKEFVVIVTATDHGENALSAKVEVNIRVLDEQDEVPIFEQS 795

Query: 72  NYTGYVSEAAPIGALVLTNTSLP 94
           +Y   V+E  P   L+    + P
Sbjct: 796 HYDVKVNENQPDTFLIQVKATDP 818



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +     LD EA   YNL++ A +      +  +IV + D ND TP FT+  Y   V+E
Sbjct: 642 GTVFVIGRLDREAKETYNLTLKAADSGELYNLVPLIVTVTDINDETPVFTENRYVFEVAE 701

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                   L NT +  V +A D+D   NA
Sbjct: 702 G-------LANTFVGQV-KASDRDLGGNA 722



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           + P  G + T K LD+E ++ + + V     +N    +A   V V + D NDN P F  L
Sbjct: 838 IDPTSGAISTVKGLDFELSQTHTIVVGTQENSNENDPQATTKVKVSVGDVNDNAPKFVTL 897

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAED 101
                + ++AP+G +V T     +V + ED
Sbjct: 898 PLPTRLQDSAPVGTVVAT-----MVAKDED 922



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 22/115 (19%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYF--- 68
           P  G++  KKPLDYE ++ Y L V A + A        +  ++ +++ D +D  P F   
Sbjct: 197 PHQGIVTIKKPLDYEQSKAYLLRVIAADRAMKPSDRLTSTTTLTINVEDADDLPPMFFYK 256

Query: 69  ------TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN----ALLDGS 113
                   + Y   V+  A  G L +     P  I A D+DS  +    + +DGS
Sbjct: 257 GCGPVCDAVQYRSEVASGAVEGVLPIR----PDTIYARDQDSMDHPIQYSFVDGS 307



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 14/105 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G L  + P+D  A   ++++V AT+  G  ++ +  V+V I   N   P F Q  
Sbjct: 538 IDPETGDLKVRTPVD--AGEQFSITVQATDAGGLYSQGIIEVMV-IPGPNLGGPIFLQEE 594

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET--NALLDGSTN 115
           Y   V+E +P+G  V T       ++A D +      +++DG+TN
Sbjct: 595 YRASVAEGSPVGVPVTT-------VKANDPERGVVYYSIVDGNTN 632


>gi|395820727|ref|XP_003783712.1| PREDICTED: protocadherin-15 isoform 15 [Otolemur garnettii]
          Length = 1860

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1016 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1076 KFYIGGVSEDARMFASVLR-------VKATDKDT 1102



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 758 EENLPAGTTFL---------RIEAKDVDLGA 779


>gi|395820711|ref|XP_003783704.1| PREDICTED: protocadherin-15 isoform 7 [Otolemur garnettii]
          Length = 1909

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 318 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 412



 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 496



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 149



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 807 EENLPAGTTFL---------RIEAKDVDLGA 828



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614


>gi|395820709|ref|XP_003783703.1| PREDICTED: protocadherin-15 isoform 6 [Otolemur garnettii]
          Length = 1906

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 318 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 412



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 496



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 149



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 807 EENLPAGTTFL---------RIEAKDVDLGA 828



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614


>gi|18087743|ref|NP_291057.1| protocadherin gamma-B7 precursor [Mus musculus]
 gi|13876356|gb|AAK26098.1| protocadherin gamma B7 [Mus musculus]
 gi|148678195|gb|EDL10142.1| mCG133388, isoform CRA_y [Mus musculus]
          Length = 929

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L P  G ++T++ LD+E    Y + V A +     + C VI+ +LD NDN P     + 
Sbjct: 291 SLDPITGDIVTRQSLDFEEVEQYTIDVEAKDRGSLSSQCKVIIEVLDENDNRPEIIITSL 350

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  +SE +P G +V        + +  D+DS  NA
Sbjct: 351 SDQISEDSPSGTVV-------ALFKVRDRDSGENA 378



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++TAT+       +  ++ +++ D NDN P F Q  Y   
Sbjct: 399 YYKLVTDSILDREQTPGYNVTITATDRGKPPLSSSTTITLNVADVNDNAPVFQQQAYLIN 458

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V+E    G  +         ++A D D  +N L+
Sbjct: 459 VAENNQPGTSITQ-------VKAWDPDVGSNGLV 485



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L  +K LD EA   ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELELQKMLDREAESTHHLMLTAVDGGDPPRTGTTQLRIRVVDANDNRPVFSQDVYRVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  VL        ++A D+D   NA
Sbjct: 251 LPEDLPPGTTVLR-------LKAMDQDEGINA 275


>gi|390481094|ref|XP_003736070.1| PREDICTED: protocadherin beta-16-like [Callithrix jacchus]
          Length = 839

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN++VT T+M   +     SV V I D NDN P 
Sbjct: 431 LLKPSVKNFY-TLVTERALDREAKAEYNITVTVTDMGTPRLQTEYSVTVQISDVNDNVPA 489

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 490 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 523



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 37/68 (54%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K LD+E T  Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 333 VNPMTGEIRLRKQLDFETTMSYEVDIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 392

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 393 SPIPENSP 400



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 230 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTTQVRIEVVDSNDNAPEFEQPIYKVQ 289

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+G+LV T       + A D DS  N 
Sbjct: 290 IPENSPLGSLVAT-------VSARDLDSGANG 314


>gi|449482631|ref|XP_004176432.1| PREDICTED: protocadherin-16 [Taeniopygia guttata]
          Length = 2905

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            +L P  GVL T   LD E    Y+L V   +       A  SV V +LD NDN P F Q 
Sbjct: 1608 SLDPVSGVLSTAHALDREQIASYSLIVVVQDHGSPPRSATMSVTVQVLDLNDNAPSFAQA 1667

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +YT  V E  P+GALVL        + AED D  TN 
Sbjct: 1668 SYTVEVPEDLPVGALVLQ-------LVAEDPDEGTNG 1697



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+  + LD+EA  +YNL+V A++  +    A   V++ + D NDN P F++  Y   V
Sbjct: 2330 GALVLVESLDFEAIPVYNLTVAASDRGLPQRSATVPVLITVQDVNDNPPVFSRAEYRAVV 2389

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SEAA      L  T L L + A D DS
Sbjct: 2390 SEAA------LPGTEL-LRVAAHDADS 2409



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNY 73
            LH   G L   +PLD EA  ++ L V AT+  G   A+  V + + D NDN PYF     
Sbjct: 2430 LHESTGALSLVRPLDREAQALHTLVVQATDTPGGHFALVPVAIEVKDINDNKPYFPVEML 2489

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +  + E  P G LV T       +RA D D+
Sbjct: 2490 SASIRENLPPGTLVTT-------LRAVDADT 2513



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 8/90 (8%)

Query: 20  GVLLTKKPLDY-EATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G L T +PLD  E T  Y+ ++ A +  G  ++  V V + D NDN P F  L Y   +S
Sbjct: 457 GQLCTVQPLDRDEGTSAYDFTIIAVDGGGLNSMVYVKVFLEDTNDNRPVFYPLEYAASIS 516

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  G  VL        + A DKD   N 
Sbjct: 517 TQSMPGTAVLR-------VTAHDKDEGLNG 539



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
           + P  G++ T  PLDYE      L+V AT+        S +VH+   D NDN P F    
Sbjct: 344 IDPATGIITTAAPLDYEKDPQPQLTVLATDRGTPALSSSAVVHVALQDVNDNEPVFKSNF 403

Query: 73  YTGYVSEAAPIGALVLTNTS 92
           Y   + E  P+G   L  T+
Sbjct: 404 YNVSLKENTPVGTCFLQVTA 423



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 13/101 (12%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPY 67
            F +L+   H    + LT  PLD+E    Y L++ A++    +   ++ V + D NDN P 
Sbjct: 2106 FGVLRYGGH----IALTG-PLDHEQRSRYTLTLRASDTR-HETEANLTVLVEDVNDNVPT 2159

Query: 68   FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            FTQ+ Y   + E  P G ++LT       + A D DS +N 
Sbjct: 2160 FTQVFYQVLLPEHTPAGTVILT-------VSATDPDSGSNG 2193



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y+L VTAT+      +A  + ++ ++D NDN P F Q  Y   + E    G+
Sbjct: 250 LDREERDSYDLRVTATDSGTPPLRAESAFVLQVMDVNDNPPLFDQQEYKQSIPEVVYPGS 309

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            VL        + A DKD   N 
Sbjct: 310 FVLQ-------VTARDKDQGPNG 325



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 14/101 (13%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTAT-NMAGAKA------VCSVIVHILDRNDNTPYFT 69
           P  G L  K  LD E   +Y L+V A+    GA A        +V + I D NDN+P  +
Sbjct: 869 PESGWLYVKSALDRETRDLYVLTVLASVGGTGAAADARKTGTSTVRISITDENDNSPRLS 928

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +  Y   VSE    G+ V         + A D+D+  N+ L
Sbjct: 929 EERYFFTVSENQAPGSTVGR-------VTASDRDAGQNSRL 962



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 28  LDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           L YEA   Y+L++ A  + +    +  +++VH+   +DN P F  L Y   V E  P+  
Sbjct: 776 LQYEAISAYSLAIVARDSGIPQLSSTFTLLVHVQAEDDNGPIFDTLTYRVEVQEGVPVST 835

Query: 86  LVLTNTSLPLVIRAEDKDSETNAL 109
             L        +RA   D E+ AL
Sbjct: 836 RFLQ-------VRALAHDVESTAL 852



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHI 58
            S P Q F I         GV+   K LDYE  +++ L V A + A    V +  V +H+
Sbjct: 118 QSDPDQYFTI-----DARTGVIKLNKGLDYEVRKVHELVVQARDKAVHPEVTTAFVTIHV 172

Query: 59  LDRNDNTP----YFTQLNYTGYVSEAAPIGALV 87
            D NDN P     F   + +  +SE A  G  V
Sbjct: 173 RDYNDNQPTMTIIFLSEDGSPQISEGAQPGQYV 205



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 8/90 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G L T  PLD+E+  +  L V A + +  A +   V + + D NDN P F   + +  + 
Sbjct: 665 GQLRTSLPLDHESQSVLILDVQARSGSPPAYSNTRVKISVSDVNDNMPAFPTPSDSILLP 724

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           EA   G  V T       ++AED+DS  N 
Sbjct: 725 EATEPGTTVYT-------LQAEDRDSGANG 747



 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G L     L+ E    +NL+V AT+       A  + SV+V  LD ND  P F +  Y  
Sbjct: 1408 GALSIVGALNREEVAQHNLTVVATDHGFPRLSATQLLSVLV--LDVNDEAPVFEKPEYEA 1465

Query: 76   YVSEAAPIGALVL 88
            +V E  P G+ VL
Sbjct: 1466 HVMENLPAGSPVL 1478


>gi|327292140|ref|XP_003230778.1| PREDICTED: protocadherin gamma-B2-like, partial [Anolis
           carolinensis]
          Length = 692

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  LLT  PLD E    YN+++TAT+  G  ++    S+ VHI D NDN+P F +  Y  
Sbjct: 403 YYKLLTDGPLDREKNSEYNITITATD-KGTPSLSTHKSITVHISDINDNSPTFEESTYHV 461

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +VSE  P GA + T       I+A D D + NA +
Sbjct: 462 FVSENNPSGASIYT-------IKASDPDLDRNARI 489



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           A LK +L P  G++  ++PLD+E +  Y + V A +  G  A C V V ++D NDN P  
Sbjct: 290 ANLKFSLDPESGIISIREPLDFEESTSYMMLVEAKDGGGLLAHCKVEVDVIDENDNDP-- 347

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            +++ T   S   PI    L  T + L+  A+  + E+
Sbjct: 348 -EISLTSVFS---PIPEDSLPGTVIALISVADRDEGES 381



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y VL+ +K LD E+    +L +TA +           + ++I D NDN P FTQ  Y   
Sbjct: 193 YPVLIQRKSLDRESEHSLHLILTALDGGEPFKTGTAQIWINITDANDNPPIFTQETYRSS 252

Query: 77  VSEAAPIGALV 87
           + E  PIG+LV
Sbjct: 253 LKETTPIGSLV 263


>gi|324499643|gb|ADY39852.1| Protein dachsous [Ascaris suum]
          Length = 2824

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           +G +  ++ LDYE T  Y L+V A + +G   +  V VH+ D NDN+P F   NY   V 
Sbjct: 595 WGTICVEEALDYEKTTKYQLTVLAHDSSGHSGIALVNVHVEDVNDNSPIFYPANYNVSVK 654

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKD 103
           E  PIG+ V       LV+ A D D
Sbjct: 655 EDTPIGSPV-------LVLSANDAD 672



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G L     LDYE TR +NL + A +          +V ++++D NDN P F    
Sbjct: 893 VRPLTGELALSAALDYEVTRRFNLVIKARDQGIPPRSNNITVTLNVIDVNDNAPIFEMQL 952

Query: 73  YTGYVSE-AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   V+E  AP+  +        L ++A+D DSE NA
Sbjct: 953 YGVEVAEDIAPMTEI--------LAVKAKDIDSERNA 981



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDN 64
            QLF+I + +     G +     LDYE  R + L++    M G   +  ++I+ ++D NDN
Sbjct: 1998 QLFSINRFS-----GAIHLIGNLDYETAREHRLNIEV--MDGENISKSTLIISVIDENDN 2050

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y   V++   IG++V+  T       A D DS
Sbjct: 2051 KPRFDKHFYDVIVTKDITIGSVVMKMT-------ARDADS 2083



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++T + LD E    Y L +            +V + +L+ NDN P    L     +SE
Sbjct: 1909 GRIMTTQQLDREIEHEYLLKIVGNGHHNVVPETAVRIRVLNVNDNVPSLPSLR-PRKISE 1967

Query: 80   AAPIGALVLTNTS 92
            +APIG LV + T+
Sbjct: 1968 SAPIGTLVASVTA 1980



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           G +  K  LDYE    Y+L   A  + G++A+  V VH++D NDN+P F
Sbjct: 74  GEISVKSDLDYERRTSYDL--LAIPVDGSQAI-HVYVHVIDENDNSPTF 119


>gi|149017347|gb|EDL76398.1| rCG49295, isoform CRA_ah [Rattus norvegicus]
          Length = 867

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + +K P+D+EA R Y +++ A +  G    C V++ ILD NDN P     + +  ++E
Sbjct: 299 GEIKSKGPIDFEARRTYTMNIEAKDGGGMATECKVVIEILDENDNAPEVVFTSVSNSITE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G +V        + +  DKD+E N 
Sbjct: 359 DAEPGTVV-------ALFKTYDKDAEENG 380



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++ AT+       +  SV +H+ D NDN P F Q +Y   
Sbjct: 401 YYKLVTDGILDREQTPEYNVTIVATDKGKPSLSSSTSVTLHVGDVNDNAPVFHQASYLIQ 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V+E  P GA +         + A D D  +N L+
Sbjct: 461 VAENNPPGASIAQ-------VSASDPDLGSNGLI 487



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E      L +TA +  G + V      + + + D NDN P F+Q  Y   +
Sbjct: 194 LVLEKPLDREKQSSQLLVLTAVD--GGEPVLTGTAQIQIEVTDANDNPPVFSQSTYKVSL 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G  VLT       + A D D   NA
Sbjct: 252 RENMPSGTSVLT-------VMATDPDEGVNA 275


>gi|81158093|ref|NP_001032236.1| protocadherin gamma-B3 precursor [Rattus norvegicus]
 gi|50512427|gb|AAT77608.1| protocadherin gamma b8 [Rattus norvegicus]
 gi|149017346|gb|EDL76397.1| rCG49295, isoform CRA_ag [Rattus norvegicus]
          Length = 929

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + +K P+D+EA R Y +++ A +  G    C V++ ILD NDN P     + +  ++E
Sbjct: 299 GEIKSKGPIDFEARRTYTMNIEAKDGGGMATECKVVIEILDENDNAPEVVFTSVSNSITE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G +V        + +  DKD+E N 
Sbjct: 359 DAEPGTVV-------ALFKTYDKDAEENG 380



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++ AT+       +  SV +H+ D NDN P F Q +Y   
Sbjct: 401 YYKLVTDGILDREQTPEYNVTIVATDKGKPSLSSSTSVTLHVGDVNDNAPVFHQASYLIQ 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V+E  P GA +         + A D D  +N L+
Sbjct: 461 VAENNPPGASIAQ-------VSASDPDLGSNGLI 487



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E      L +TA +  G + V      + + + D NDN P F+Q  Y   +
Sbjct: 194 LVLEKPLDREKQSSQLLVLTAVD--GGEPVLTGTAQIQIEVTDANDNPPVFSQSTYKVSL 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G  VLT       + A D D   NA
Sbjct: 252 RENMPSGTSVLT-------VMATDPDEGVNA 275


>gi|395820721|ref|XP_003783709.1| PREDICTED: protocadherin-15 isoform 12 [Otolemur garnettii]
          Length = 1936

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDKDT 1178



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 523



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 176



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 834 EENLPAGTTFL---------RIEAKDVDLGA 855



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|395820717|ref|XP_003783707.1| PREDICTED: protocadherin-15 isoform 10 [Otolemur garnettii]
          Length = 1926

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 829 EENLPAGTTFL---------RIEAKDVDLGA 850



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|395820703|ref|XP_003783700.1| PREDICTED: protocadherin-15 isoform 3 [Otolemur garnettii]
          Length = 1929

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 829 EENLPAGTTFL---------RIEAKDVDLGA 850



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|395820723|ref|XP_003783710.1| PREDICTED: protocadherin-15 isoform 13 [Otolemur garnettii]
          Length = 1683

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1094 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1153

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1154 KFYIGGVSEDARMFASVLR-------VKATDKDT 1180



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 525



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 836 EENLPAGTTFL---------RIEAKDVDLGA 857



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 584 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 643


>gi|395820699|ref|XP_003783698.1| PREDICTED: protocadherin-15 isoform 1 [Otolemur garnettii]
          Length = 1676

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 829 EENLPAGTTFL---------RIEAKDVDLGA 850



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|395820719|ref|XP_003783708.1| PREDICTED: protocadherin-15 isoform 11 [Otolemur garnettii]
          Length = 1931

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 829 EENLPAGTTFL---------RIEAKDVDLGA 850



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|395820701|ref|XP_003783699.1| PREDICTED: protocadherin-15 isoform 2 [Otolemur garnettii]
          Length = 1681

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDKDT 1178



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 523



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 176



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 834 EENLPAGTTFL---------RIEAKDVDLGA 855



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|395820725|ref|XP_003783711.1| PREDICTED: protocadherin-15 isoform 14 [Otolemur garnettii]
          Length = 1889

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 303 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 362

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 363 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 397



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1050 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1110 KFYIGGVSEDARMFASVLR-------VKATDKDT 1136



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 481



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 792 EENLPAGTTFL---------RIEAKDVDLGA 813



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 540 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 599


>gi|345328658|ref|XP_001507931.2| PREDICTED: protocadherin gamma-B6-like [Ornithorhynchus anatinus]
          Length = 844

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G ++TKK LD+E T  Y + V A +  G  A C V++ ILD NDN P     + +
Sbjct: 294 VDPISGEIITKKRLDFEETNRYKMDVEAKDGGGLTAQCKVVIEILDENDNAPEVMFTSLS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E +  G ++        +IR  D+DS  N 
Sbjct: 354 KEIPEDSEPGTVI-------ALIRIRDQDSGNNG 380



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 13/96 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    ++L +TA  M G   + S    + +++ D NDN P F+Q  Y 
Sbjct: 191 YPELLLEKPLDREQQSFHHLVLTA--MDGGDPIRSGTAQIRINVTDSNDNPPVFSQDVYK 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E+ P G+ VL        ++A D D   NA +
Sbjct: 249 VSLRESLPPGSPVLR-------VKATDPDQGVNAQI 277



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++TA++      + S  V +L  D NDN P F    Y  Y
Sbjct: 401 YYKLVTDNVLDREQTAEYNITITASDKGNPPLITSKTVSLLVADVNDNPPVFPHTTYVAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E    GA +         I A D+D ++N+ +
Sbjct: 461 VPENNRPGASIYR-------ISASDRDLDSNSRI 487


>gi|262263248|tpg|DAA06625.1| TPA_inf: protocadherin gamma b23 isoform [Anolis carolinensis]
          Length = 940

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  LLT  PLD E    YN+++TAT+  G  ++    S+ VHI D NDN+P F +  Y  
Sbjct: 403 YYKLLTDGPLDREKNSEYNITITATD-KGTPSLSTHKSITVHISDINDNSPTFEESTYHV 461

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +VSE  P GA + T       I+A D D + NA +
Sbjct: 462 FVSENNPSGASIYT-------IKASDPDLDRNARI 489



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           A LK +L P  G++  ++PLD+E +  Y + V A +  G  A C V V +LD NDN P  
Sbjct: 290 ANLKFSLDPESGIISIREPLDFEESTSYMMLVEAKDGGGLLAHCKVEVDVLDENDNDP-- 347

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            +++ T   S   PI    L  T + L+  A+  + E+
Sbjct: 348 -EISLTSVFS---PIPEDSLPGTVIALISVADRDEGES 381



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y VL+ +K LD E+    +L +TA +           + ++I D NDN P FTQ  Y   
Sbjct: 193 YPVLIQRKSLDRESEHSLHLILTALDGGEPFKTGTAQIWINITDANDNPPIFTQETYRSS 252

Query: 77  VSEAAPIGALV 87
           + E  PIG+LV
Sbjct: 253 LKETTPIGSLV 263


>gi|444713190|gb|ELW54098.1| Protocadherin gamma-A1 [Tupaia chinensis]
          Length = 820

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E   +Y++ V A + AG  A   V+V +LD NDN P  +  + T  V E
Sbjct: 298 GEIANKEPLDFEEYNMYSMEVQAQDGAGLMARAKVLVEVLDVNDNAPEVSITSVTTTVPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P GA++        +I   D+DSE N 
Sbjct: 358 NSPPGAII-------ALINVHDQDSEENG 379



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E T  YN++VTAT+  G  A+ +   + + + D NDN P F Q +Y+ 
Sbjct: 400 YYRLVTERTLDRELTSEYNITVTATDQ-GTAALSTDSHIYLQVTDINDNPPAFHQDSYSA 458

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           YV E  P GA + +       ++A+D DS  NA
Sbjct: 459 YVPENNPRGASIFS-------VKADDADSNENA 484



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 13/96 (13%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLN 72
           P +  ++ + PLD EA  +++L +TA++  G   V S    + V ++D NDN P FTQ  
Sbjct: 188 PQHPEMVLQSPLDREAAAVHHLVLTASD--GGDPVRSGTLRIRVQVVDANDNPPAFTQAQ 245

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   +SE  P+G  +       L++ A D D   N 
Sbjct: 246 YRTRISENVPLGTRL-------LIVNATDPDEGANG 274


>gi|395820713|ref|XP_003783705.1| PREDICTED: protocadherin-15 isoform 8 [Otolemur garnettii]
          Length = 1674

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 829 EENLPAGTTFL---------RIEAKDVDLGA 850



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|292621593|ref|XP_002664697.1| PREDICTED: protocadherin-16-like [Danio rerio]
          Length = 3237

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFT 69
            K +++P  G L   +P+D E   +YNL++ A +    +   S +  V ++D ND  PYF 
Sbjct: 1547 KFSINPDTGSLSILRPIDREEEDLYNLTIVAEDHGLQQRSSSQLLSVQVIDVNDEAPYFQ 1606

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +  Y  +++E  P G+ V       LV+ A D D  TN ++
Sbjct: 1607 ESQYEAFIAENQPAGSTV-------LVVSASDMDQGTNGIV 1640



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 10/99 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            ++HP  GV+ T K LD EA  +Y L+V A +       A  +V V +LD NDN P F ++
Sbjct: 1651 SIHPVTGVITTTKALDREAQGVYALTVYARDGGSPPNFAKTTVRVTVLDENDNRPAFGRV 1710

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y+  V E      L          IRA D+DS  + L+
Sbjct: 1711 YYSLEVPENQEPVTL--------FTIRATDQDSGDSGLV 1741



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQL 71
            + P  G L  KK +++++ R   L V   + +G     A+ +V VH+ D NDN P F Q 
Sbjct: 2376 IDPSNGTLFIKKEVEFDSQRPSILVVIEASDSGTPPLTALSTVQVHVSDVNDNAPVFHQT 2435

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   VSE    G+ +LT
Sbjct: 2436 EYRASVSEDEVPGSTILT 2453



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G+L+    LD+E    YNL++  ++    +   SV  +++++D NDN P F++  Y+  V
Sbjct: 2499 GMLILADKLDFEIASSYNLTIVVSDRGIPQRSSSVPVLINVMDTNDNPPSFSRAEYSAVV 2558

Query: 78   SEAAPIGALVL 88
            +E A  G  +L
Sbjct: 2559 NEGAERGTEIL 2569



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  K  LD EA  +Y L+V AT+  G        +V V ++D NDNTP FTQ      
Sbjct: 1020 GWLFVKSALDREAKEMYLLTVLATSGNGQLKKTGSATVRVSVMDENDNTPRFTQERAFLA 1079

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E  P G      T    V  A D+D+  N  L
Sbjct: 1080 VRENLPAG------TGFGRV-SASDRDAGLNGRL 1106



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV LT  PLD+E    Y L+V++++ +  ++  ++ + + D NDN P F+Q  Y   ++E
Sbjct: 2282 GVSLTT-PLDFEIKTWYTLTVSSSD-SKQQSHANLTILVEDVNDNAPVFSQDLYEVTLAE 2339

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +P G+ V+T       + A DKDS  N  +
Sbjct: 2340 HSPAGSSVIT-------VTATDKDSGENGRI 2363



 Score = 41.6 bits (96), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y L V AT+      +A  S  + ++D NDN P F Q  YT  + E A  G+
Sbjct: 388 LDREEQDHYELRVMATDSGTPPLRAESSFTIQVIDVNDNPPLFDQQEYTQVIPEVAFPGS 447

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            V+        + A DKD   N 
Sbjct: 448 FVVQ-------VTARDKDQGPNG 463



 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G ++T   LD E    YN  V A + +      +   V VHILD NDN P+F        
Sbjct: 1865 GRIITAATLDREKVASYNFQVYAMDSSATNPRNSSAEVAVHILDVNDNAPFFITDPLIIN 1924

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VS ++      L+N  +   +RAEDKD   N 
Sbjct: 1925 VSISS------LSNHRVLATMRAEDKDFGANG 1950



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 11/97 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            L    GVL T + LD E+   Y L+V A +  G  ++ S +   + +LD NDN+P F   
Sbjct: 1756 LDKKLGVLSTSRALDRESRAKYTLTVEAQDQ-GIPSLTSTVTLDISVLDLNDNSPVFPSS 1814

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y+  VSE A  G+LVL        + A DKD  +N+
Sbjct: 1815 SYSVEVSEDASAGSLVLE-------VSASDKDEGSNS 1844



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTP----YFTQLNY 73
           GV+   KPLDYE  R++ L V A + A    V +  V + + D NDN P     F   + 
Sbjct: 270 GVITLNKPLDYEMRRVHELVVQARDNASQPEVTNSFVTIQVRDYNDNQPTMTIIFLSEDG 329

Query: 74  TGYVSEAAPIGALV 87
           +  +SE A  G  V
Sbjct: 330 SPRISEGAQPGQYV 343



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +  ++ LD E    +   + A++  G  A+  V V I D N+N PYF   + T  + E
Sbjct: 2604 GAVRLRRSLDSEKQSSHMFVIQASDGQGHFALAPVTVEIKDINNNRPYFPLKSLTASIRE 2663

Query: 80   AAPIGALV 87
              P  ALV
Sbjct: 2664 NQPQNALV 2671



 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 36  YNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           Y+ +VTA +  G  +V  V V ++D NDN P F  ++Y   +S  +  G  VL       
Sbjct: 612 YDFTVTAVDGGGLSSVAYVRVDLIDINDNQPAFYPVSYAVSLSTQSAPGTSVLK------ 665

Query: 96  VIRAEDKDSETNA 108
            + A D D+  N 
Sbjct: 666 -VTAHDPDAAENG 677



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV- 77
           G L T  PLD+EA    NL V A      A     V + + D NDN P F   +    + 
Sbjct: 803 GALRTSLPLDHEAQPSLNLEVQAHCGNPPAFGQTRVRITVSDVNDNAPVFLPSSSESLIL 862

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   +G +V         ++AED+DS  N LL
Sbjct: 863 PEDTRMGTVVYK-------VQAEDRDSGPNGLL 888


>gi|344257359|gb|EGW13463.1| Protocadherin gamma-B2 [Cricetulus griseus]
          Length = 611

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + ++ P+D+E  R Y +SV A +  G    C VI+ ILD NDN P     + +  + E
Sbjct: 259 GEIRSEGPIDFETKRTYTMSVEAKDGGGMATECKVIIEILDENDNAPEVVFTSVSNSIPE 318

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G +V        + +  DKDSE N 
Sbjct: 319 DAEPGTVV-------ALFKTYDKDSEENG 340



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+S+ AT+       +  SV + + D NDNTP F + +Y   
Sbjct: 361 YYKLVTDGVLDREQTPAYNVSIIATDRGKPPLSSSTSVTLQVGDINDNTPVFLRTSYLIQ 420

Query: 77  VSEAAPIGALV 87
           V+E  P GA +
Sbjct: 421 VAETPPPGASI 431



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E      L +TA  M G +        + + + D NDN P F+Q  Y   +
Sbjct: 154 LVLEKPLDREKQSSQLLVLTA--MDGGEPALTGTAQIQIEVTDANDNPPVFSQNMYKASL 211

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G  VL        + A D+D   NA
Sbjct: 212 RENMPSGTSVLK-------VMATDQDEGVNA 235



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTP 66
           GV+  ++  D+E  R + L++ A +        +V VH+L  DRNDN P
Sbjct: 472 GVVFAQRAFDHEQLRSFQLTLQARDQGSPPLSANVSVHVLVGDRNDNAP 520


>gi|54013438|dbj|BAD60808.1| protocadherin2-gamma-v5-sCP1 [Danio rerio]
          Length = 969

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE+   Y L++ A +  G    C +++ + D NDN P    ++++  ++E +P+G  V
Sbjct: 318 LDYESQNSYQLNINARDKGGLSDTCKIVIDVTDENDNPPTIQLMSFSNTIAENSPVGTTV 377

Query: 88  LTNTSLPLVIRAEDKDSETNALLDGSTN 115
                   VI  ED DS  N L+  S N
Sbjct: 378 -------AVINVEDADSGKNGLVHFSIN 398



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E    YN+++  ++  G+ A  S   + V I D NDN P F    Y  
Sbjct: 412 YYSLITDDMLDRETVTEYNITILVSDQ-GSPARHSNKTLNVKISDVNDNPPKFGSDEYKT 470

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E    G  +LT       ++A D D   NA L
Sbjct: 471 FVNENNSPGVTILT-------VKANDADWGPNAQL 498


>gi|395820707|ref|XP_003783702.1| PREDICTED: protocadherin-15 isoform 5 [Otolemur garnettii]
          Length = 1790

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1094 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1153

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1154 KFYIGGVSEDARMFASVLR-------VKATDKDT 1180



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 525



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 836 EENLPAGTTFL---------RIEAKDVDLGA 857



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 584 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 643


>gi|395817817|ref|XP_003782344.1| PREDICTED: uncharacterized protein LOC100956225 [Otolemur
           garnettii]
          Length = 1897

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+KPLD E+   YN+++T T++     K   S+ V I D NDN P 
Sbjct: 391 LLKPTFKNFY-TLVTQKPLDRESKAQYNITITVTDLGTPRLKTEHSITVLISDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D+DS TNA
Sbjct: 450 FTQTSYTLFVGENNSPALHIGT-----------ISATDRDSGTNA 483



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+E TR YN+ + A +  G    C+V + ++D NDN P  T    +    E
Sbjct: 298 GEIRLKRALDFETTRYYNVEIVAIDGGGLSGKCTVAIEVMDVNDNAPEITMSTLSSSTPE 357

Query: 80  AAP 82
            +P
Sbjct: 358 NSP 360



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +  KK LD+E  + Y + V A++  G    C+V++ ++D NDN P  T       + E
Sbjct: 1593 GEIRLKKVLDFEEIQSYRMEVEASDGGGLSGKCAVVIEVMDINDNAPELTMSLLISDIPE 1652

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P         ++  + R  D DS  N 
Sbjct: 1653 NSP--------ETVVAIFRISDPDSGDNG 1673



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
            G +  +K LD+E  + Y+L + AT+  G    CS+++ +LD NDN P  T
Sbjct: 1039 GEIRLRKALDFEEFQSYHLDIEATDGGGLTGKCSLVLKVLDVNDNAPELT 1088



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
            +LKP +   +  L+T+  L+ E    YN+++T T+M     K   S+ V I D NDN P 
Sbjct: 1686 LLKPTVEN-FFTLVTEGLLNRETRAQYNITITVTDMGTPRLKTEHSITVLISDVNDNAPT 1744

Query: 68   FTQLNYTGYVSE----AAPIGALVLTNTSLPLV 96
            FTQ +YT +V E    A  IG +  T+  + LV
Sbjct: 1745 FTQTSYTLFVRENNSPALHIGTISATDRHVLLV 1777



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+  K LD E      L++TA +           V++ ILD NDN P F Q  Y   
Sbjct: 1485 YPELVLDKALDREEQPQLRLTLTAMDGGSPPRTGTSQVLIVILDINDNAPEFVQRLYEAQ 1544

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E +PIG+LV+        + A D D+  N  L
Sbjct: 1545 VPENSPIGSLVIK-------VSARDLDAGINGEL 1571



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
            ILKP++   Y  L+T+  LD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 1132 ILKPSVENFY-TLVTEGALDRETRAEYNVTITVTDLGTPRLKTQLNITVLVSDINDNAPA 1190

Query: 68   FTQLNYT 74
            FTQ +YT
Sbjct: 1191 FTQTSYT 1197



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E      L++TA +           + + +LD NDN P FTQ  Y   V E
Sbjct: 935  LVLDKALDREEQPQLRLTLTALDGGSPPRSGTSEIQIQVLDINDNAPEFTQEFYEAQVPE 994

Query: 80   AAPIGALVLT 89
             +P G+L+ T
Sbjct: 995  NSPFGSLITT 1004



 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E    ++L++TA +  GA       +V++ +LD NDN P F Q  Y  
Sbjct: 191 YPELVLDKELDREEQPEFSLTLTALD-GGAPPRSGTATVLIVVLDNNDNAPEFLQSLYEV 249

Query: 76  YVSEAAPIGALVL 88
            V E +P+ +LVL
Sbjct: 250 QVPENSPLNSLVL 262


>gi|312095049|ref|XP_003148232.1| hypothetical protein LOAG_12672 [Loa loa]
          Length = 439

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T  P D+E   +Y        + GA   C + +HI+D+NDN P F   +Y   V E
Sbjct: 155 GIISTTAPFDFEKENLYQFKAITYEIQGASLECHIFLHIIDKNDNAPKFGSSSYEVKVYE 214

Query: 80  AAPIGALVL 88
            AP+G ++ 
Sbjct: 215 DAPVGLVIF 223


>gi|395504760|ref|XP_003756715.1| PREDICTED: protocadherin gamma-A2-like [Sarcophilus harrisii]
          Length = 1061

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T + LD E   +YN++V A +  G+ A+ +   +++ + D NDN P F+Q  Y+ 
Sbjct: 638 YYSLVTDRALDREQVSVYNITVRAKDF-GSPALSTDTHILLQVADINDNPPTFSQSTYSA 696

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+ E  P GA + + T       A D DSE NAL+
Sbjct: 697 YIQENNPRGASIYSLT-------AHDPDSEQNALI 724



 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L T + LDYE    Y + V A +  G  +   + V +LD NDN P  T  + T
Sbjct: 531 MNPFTGELSTLQNLDYEDAEFYMMEVEAQDGLGFWSRAKIHVTVLDVNDNAPEVTITSVT 590

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE AP G ++        +    D+DS  N 
Sbjct: 591 NSISENAPPGTVI-------ALFHVHDRDSGENG 617



 Score = 38.1 bits (87), Expect = 0.64,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   +++L +TA +           + V +LD NDN P F+Q  YT  
Sbjct: 428 YPELVLERALDREEEAVHHLMLTAWDGGEPLRSGTARIRVTVLDVNDNAPVFSQSVYTVS 487

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E    G ++LT       + A D D   N+
Sbjct: 488 VPENVSQGTILLT-------VNATDADEGINS 512


>gi|344277382|ref|XP_003410481.1| PREDICTED: protocadherin Fat 4 [Loxodonta africana]
          Length = 4980

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL+  K LDYE  + + ++++AT+         C+V V+++D NDN+P FT  
Sbjct: 3138 AINSSTGVLILAKALDYEQCQKHEMTISATDGGWVARTGYCTVTVNVIDVNDNSPVFTPD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  ++LD NDN P F+  +Y+
Sbjct: 1891 LNPVTGVFNLTRVLDYEAQQYYILTVRAEDGGGQFTTIRVYFNVLDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMETLPLGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENVPIGTSVIS-------VTAHDPDADINGKL 1455



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSIRPLDREKVSQYILTIKSSDKGSPSQSTSVKVIINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
             E +P+G  V   T+        D+D   NA+
Sbjct: 2782 PENSPLGYTVTRVTT-------SDEDVGVNAI 2806



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDMNDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 694 YFAHIQENEPGGSYITT 710



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTVSLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L   + LD E    + L+VTAT+        +  ++I+  D NDN P F    Y   +
Sbjct: 2314 GELRVTQSLDRETKEHFVLTVTATDSGSPALTGTGTINIIVDDVNDNVPTFASKRYFTTI 2373

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G  V       L++ A D D+ TNA++
Sbjct: 2374 PEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD EAT  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREATPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPIF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAAVGSSVLQ-------VAAADADEGTNA 283



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P FTQ  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPAAAVQARSSVASLVIFVNDINDHPPVFTQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T +Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDLYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2879 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 2905



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3243 IDPNTGIITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD EA   Y L V +++    +   +  SV+V + D NDN P F   
Sbjct: 2410 INPSTGQIITSALLDREAKENYTLVVVSSDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 2469

Query: 72   NYTGYVSEAAPIGALVL 88
             Y  ++    P G+ V 
Sbjct: 2470 PYVTHIPSPTPPGSFVF 2486



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 36   YNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            Y + + A++M   +   S I  V + D NDN P F QL+Y   +SE+ P+ +        
Sbjct: 962  YQIEILASDMGVPQLSSSFILTVCVHDVNDNPPVFDQLSYEVTLSESEPVNSRFFK---- 1017

Query: 94   PLVIRAEDKDSETNA 108
               ++A DKDS  N 
Sbjct: 1018 ---VQASDKDSGANG 1029



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQLPASRYTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086


>gi|395820705|ref|XP_003783701.1| PREDICTED: protocadherin-15 isoform 4 [Otolemur garnettii]
          Length = 1795

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1099 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1159 KFYIGGVSEDARMFASVLR-------VKATDKDT 1185



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 530



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 176



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 841 EENLPAGTTFL---------RIEAKDVDLGA 862



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 589 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 648


>gi|395820715|ref|XP_003783706.1| PREDICTED: protocadherin-15 isoform 9 [Otolemur garnettii]
          Length = 1788

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKSS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1094 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHAPVFQK 1153

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1154 KFYIGGVSEDARMFASVLR-------VKATDKDT 1180



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYNVYV 525



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  V T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTVFTGFS 171



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G   L         R E KD +  A
Sbjct: 836 EENLPAGTTFL---------RIEAKDVDLGA 857



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 584 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 643


>gi|58332002|ref|NP_001011150.1| protocadherin 18 [Xenopus (Silurana) tropicalis]
 gi|54311358|gb|AAH84899.1| protocadherin 18 [Xenopus (Silurana) tropicalis]
          Length = 1145

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 14/101 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT-QL 71
           + P  G L   KP+DYE T+ Y + V A +M      A C +I++++D NDN P     L
Sbjct: 306 IDPESGQLTLIKPVDYETTKSYEIDVQAQDMGPNSIPAHCKIIINVVDVNDNKPEININL 365

Query: 72  NYTG----YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             TG    Y+SE AP+   V        ++R +DKDS  N 
Sbjct: 366 MSTGKEIAYISEGAPLDTFV-------ALVRVQDKDSGLNG 399



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    Y L +TA +    +   S +  + I D NDN+P F + +Y   
Sbjct: 202 YAELVVIRELDRELQSSYELQLTAYDNGVPQRYGSSLLKISISDSNDNSPVFEKQSYVVQ 261

Query: 77  VSEAAPIGALVL 88
           + E +P+G L++
Sbjct: 262 LPENSPLGTLLI 273


>gi|348582938|ref|XP_003477233.1| PREDICTED: protocadherin gamma-B2-like [Cavia porcellus]
          Length = 837

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 11/88 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T  PLD E T  YN++VTAT+  G   +CS   V +HI D NDN P F Q  YT 
Sbjct: 399 YYKLVTDGPLDREKTPEYNVTVTATD-KGKPPLCSSKSVTLHIADVNDNAPVFQQAFYTV 457

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           +V+E  P GA +         +RA D D
Sbjct: 458 HVAENNPPGASIAQ-------VRASDPD 478



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + +K  +D+E +R Y +S+ A +  G    C V++ ILD NDN P     + +  ++E
Sbjct: 297 GEIKSKDLIDFEISRSYTMSIEAKDGGGMATECKVVLEILDENDNVPEVVFTSVSSSITE 356

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G ++        + +  DKDS  N 
Sbjct: 357 DAEPGTVI-------ALFKTYDKDSGENG 378



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ +KPLD E    + L +TA +           + + + D NDN P F+Q  Y   + E
Sbjct: 192 LVLEKPLDREQQSSHLLFLTAVDGGDPVLTGTAQIKIEVTDANDNPPVFSQDVYRVSLRE 251

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G  VL        + A D+D   NA
Sbjct: 252 NVPPGTSVLK-------VTATDEDEGINA 273


>gi|344265586|ref|XP_003404864.1| PREDICTED: protocadherin gamma-A8-like [Loxodonta africana]
          Length = 833

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
           Y  LLT K LD E   +YN+SV A+++ GA  + + I   +H+ D NDN P F   +Y+ 
Sbjct: 401 YYRLLTWKYLDREEVSMYNISVMASDL-GAPPLSTEIHIALHVADTNDNPPAFPHASYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + +       + A+D DSE NA
Sbjct: 460 YIPENNPRGASIFS-------VTAQDPDSEENA 485



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E    ++L +TA++    +  +   ++V +LD NDN P F Q  Y   V E
Sbjct: 194 LVLERSLDREEEAAHHLVLTASDGGDPRRSSTVRILVTVLDTNDNAPVFAQPVYRVKVPE 253

Query: 80  AAPIGALVLT 89
             P G  +LT
Sbjct: 254 NVPPGTHLLT 263


>gi|54013436|dbj|BAD60807.1| protocadherin2-gamma-v5-A [Danio rerio]
          Length = 951

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE+   Y L++ A +  G    C +++ + D NDN P    ++++  ++E +P+G  V
Sbjct: 318 LDYESQNSYQLNINARDKGGLSDTCKIVIDVTDENDNPPTIQLMSFSNTIAENSPVGTTV 377

Query: 88  LTNTSLPLVIRAEDKDSETNALLDGSTN 115
                   VI  ED DS  N L+  S N
Sbjct: 378 -------AVINVEDADSGKNGLVHFSIN 398



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E    YN+++  ++  G+ A  S   + V I D NDN P F    Y  
Sbjct: 412 YYSLITDDMLDRETVTEYNITILVSDQ-GSPARHSNKTLNVKISDVNDNPPKFGSDEYKT 470

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E    G  +LT       ++A D D   NA L
Sbjct: 471 FVNENNSPGVTILT-------VKANDADWGPNAQL 498


>gi|444525567|gb|ELV14093.1| Protocadherin gamma-B7 [Tupaia chinensis]
          Length = 810

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++T++PLD+E    Y ++V A +       C VI+ +LD NDN P     + + Y+ E
Sbjct: 301 GNIITRQPLDFEEVERYTMNVEAKDRGSLSTQCKVIIEVLDENDNRPEIVITSLSDYILE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +P G ++        + +  D+DS  N ++
Sbjct: 361 NSPPGTVI-------ALFKTRDRDSGENGVV 384



 Score = 51.6 bits (122), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E    YN+++TAT+       +  +VI+HI D NDN P F Q++Y  +
Sbjct: 402 YYKLVTDASLDREQDSEYNVTITATDRGNPPLSSSTTVILHIGDVNDNAPVFQQVSYVVH 461

Query: 77  VSEAAPIGALV 87
           VSE  P GA +
Sbjct: 462 VSENNPPGASI 472



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E+   ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 193 YPELVLQKTLDRESQSTHHLVLTALDGGDPPRSGTAQIRILVVDANDNPPVFSQDVYRVS 252

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E AP G  VL        + A D+D   NA
Sbjct: 253 LREDAPPGTSVLR-------VSATDQDEGINA 277


>gi|158297299|ref|XP_317558.4| AGAP007924-PA [Anopheles gambiae str. PEST]
 gi|157015128|gb|EAA12848.4| AGAP007924-PA [Anopheles gambiae str. PEST]
          Length = 5159

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  + PLDY+  ++Y L++TA ++     +++  V + + D NDN PYF Q  Y  YV
Sbjct: 3223 GAVSIRNPLDYDLIQVYQLNITAEDLGYKPKRSIAMVTITLTDINDNAPYFNQSVYDAYV 3282

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +E +P    V          +A D+DS  NA+++
Sbjct: 3283 AENSPANTFVYR-------AQAHDRDSPKNAIIN 3309



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFT 69
            ++HP  GVL+  + LD E      L+V A N  G +        +I+ I D ND  P F 
Sbjct: 3426 SIHPSTGVLVVSRNLDRETQSRVVLTVLAKNYGGIRGNDTDEAQIIISIQDGND-PPEFQ 3484

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            +  Y   VSE  PIG  V       +V++A DKD
Sbjct: 3485 RDLYEASVSEGDPIGTKV-------IVVKAVDKD 3511



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +L+P  G+      LDYE  + Y L V A +       +  +V  +++D NDN P F  +
Sbjct: 1905 SLNPQTGIFTLTARLDYEEVQHYILVVQAQDNGYPSLSSTLTVYCNVVDLNDNAPIFDPM 1964

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +Y+  + E API + V+T       + A D DS +N  ++
Sbjct: 1965 SYSNEIFENAPINSDVVT-------VSATDIDSGSNGRIE 1997



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)

Query: 5   VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRN 62
           +Q F + K    P + ++     LD E    YNL+V A +       A   +I+H+ D N
Sbjct: 385 LQHFRLEK---SPSFYIVRVNGVLDREEIGKYNLTVVAIDRGAPPRTATAHLIIHVNDVN 441

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           D+ P F +  Y+  +SE AP G  V +       I A D+D+  NA +
Sbjct: 442 DHEPVFEKSEYSAVLSELAPPGTYVAS-------ITATDEDTGVNAQI 482



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD EA   Y L+V A +      +    + +++LD NDN+P F    Y+  +
Sbjct: 2158 GLLRVSGQLDREAKPSYELNVIAKDRGDPPRMTQSRIRINVLDENDNSPIFDPKQYSAAI 2217

Query: 78   SEAAPIGALVL 88
            +E A IGA VL
Sbjct: 2218 AENASIGASVL 2228



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 17/115 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDN 64
            +LFAI         G++ +K   DYE    Y L++ A N  +  +    VIVH+   N+ 
Sbjct: 3319 ELFAI-----ETATGIITSKATFDYEEQDQYTLTLAAYNPDSSMRNETKVIVHVTGVNEY 3373

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
             P F Q  +   VSE+A +G+ V        +I A DKD+  +     LL GS+N
Sbjct: 3374 FPKFIQPVFHFDVSESAEVGSSV-------GIIEATDKDAGEDGKVYYLLVGSSN 3421



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
            G L   + LDYE T+ Y+L+++A +    +   +++  V+++D NDN P F        +
Sbjct: 1376 GALYLHRALDYEDTQSYSLNISAADGGNPRLATTILFAVNVIDANDNPPAFPNTAIVRQI 1435

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  P+   ++T       + AED DS  N 
Sbjct: 1436 REGIPLNTPIVT-------VTAEDPDSGLNG 1459



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYT 74
            P G L  +  LD E    Y L++   +     +  S   VIVH++D NDN P FT   + 
Sbjct: 1040 PDGYLFVRSALDREERDYYALTIACADEGRPVSRSSSVPVIVHVIDENDNAPQFTNGTFV 1099

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V+E  P    V   T++       D+D   NA L
Sbjct: 1100 FSVAENEPPDTFVGKLTAI-------DRDIGRNAEL 1128



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L V A +    +   S  V+V++LD+NDN P FT+L ++  V
Sbjct: 2798 GEIYTTTRLDREDIAQYTLIVEAVDQGVPQLTGSATVLVNVLDKNDNPPKFTRL-FSVNV 2856

Query: 78   SEAAPIGALVLTNTS 92
            +E A IG  V+  TS
Sbjct: 2857 TENAEIGQFVIKITS 2871



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 17/104 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG-------AKAVCSVIVHILDRNDNTP 66
             ++P  GV+ T   +D EA   Y L+V AT+ A        A+ + +VIV   D NDN P
Sbjct: 1480 GINPTTGVIHTLHLIDREAIDTYRLTVLATDQAAPPAQRLSAEKLVTVIVE--DVNDNAP 1537

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             F  +N        + +G +        + I A+D DS +N L+
Sbjct: 1538 VFVSMNAAILPVRDSAMGEI--------MRIHAQDADSSSNGLV 1573



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
            A+    G +   + LD E T  Y L+V A + +      A  +V + +LD ND+ P FTQ
Sbjct: 1264 AIDDSTGQITLARALDRETTASYRLTVVAHDASKQHRLSASTTVTIEVLDENDDAPEFTQ 1323

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  + E  PIG  ++         RA D D   NA +
Sbjct: 1324 TLSQIAIVETTPIGTELMR-------FRATDLDLGANAQI 1356



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 14/97 (14%)

Query: 1    MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRI-------YNLSVTATNMAGAK--AV 51
            +  P  LF I      P  G + +K+ + Y+ T++       + L+V AT+         
Sbjct: 2988 LQQPSDLFTI-----DPATGEIFSKRRIHYKHTQLEASPENSFTLTVLATDNGKPPMYTE 3042

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            C V ++++D N+N P F+Q  Y   V E A +G  +L
Sbjct: 3043 CLVNINVVDANNNPPVFSQRAYMAPVPEGADVGLRIL 3079



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL-----DRNDNTPY 67
            LH   GV+  +KP+    TR Y LSV AT+ A    +      + IL       + + P 
Sbjct: 1587 LHRTTGVITLRKPIPKPDTR-YQLSVRATDEAVQAERKSSDAYITILTTGAPGSSSSGPV 1645

Query: 68   FTQLNYTGYVSEAAPIGALVLT 89
            F + + +G VSE  PIG  +LT
Sbjct: 1646 FAKKDLSGSVSENEPIGTSILT 1667



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ-- 70
           + P  G++ T+ PLD E      LS++A +       A   + V ILD ND  P F Q  
Sbjct: 497 IDPASGLITTRAPLDREVLGHVELSISARDGGPNPKWAHTQLKVTILDENDEAPAFAQPL 556

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           LN T  +SE AP   +V++       + A D D  TN 
Sbjct: 557 LNVT--LSETAPPRTVVVS-------LAAVDHDQGTNG 585



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 26   KPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            + LD E    Y L++ A +          +V V + D ND+ P F + +Y   ++E  PI
Sbjct: 2381 RALDREMQEEYILTLVAMDTGSPPLTGTGTVRVMVQDINDHNPEFERQSYQATIAENQPI 2440

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G  VL     P   RA D+D+  NA +
Sbjct: 2441 GTRVL----WP---RATDRDAGLNAKI 2460



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 21   VLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            V + +  LDYE  + Y + + A  ++    ++V  +IV++ D NDN P   +  Y   V 
Sbjct: 2696 VAVNRGGLDYERHQQYEVWIEAADSDRPSLRSVLQLIVNVTDANDNAPVMDRPMYVAEVL 2755

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E      LV         + A D DSE N  +
Sbjct: 2756 EEESPSQLVTK-------VSASDADSEENGQI 2780



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T++ LD E    Y L V A +       +  +V V + D NDN+P      +   V
Sbjct: 610 GQIATRRALDRELVAAYTLVVIARDHGSPPQSSSATVSVAVEDANDNSPELYPRAFFVPV 669

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +E AP G L+   T       A D+D   NA++
Sbjct: 670 AEDAPEGTLIAQLT-------ATDRDEGENAIV 695


>gi|393909080|gb|EFO15837.2| hypothetical protein LOAG_12672 [Loa loa]
          Length = 575

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++ T  P D+E   +Y        + GA   C + +HI+D+NDN P F   +Y   V E
Sbjct: 184 GIISTTAPFDFEKENLYQFKAITYEIQGASLECHIFLHIIDKNDNAPKFGSSSYEVKVYE 243

Query: 80  AAPIGALVL 88
            AP+G ++ 
Sbjct: 244 DAPVGLVIF 252


>gi|327270365|ref|XP_003219960.1| PREDICTED: protocadherin gamma-B2-like [Anolis carolinensis]
          Length = 763

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  LLT  PLD E    YN+++TAT+  G  ++    S+ VHI D NDN+P F +  Y  
Sbjct: 403 YYKLLTDGPLDREKNSEYNITITATD-KGTPSLSTHKSITVHISDINDNSPTFEESTYHV 461

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +VSE  P GA + T       I+A D D + NA +
Sbjct: 462 FVSENNPSGASIYT-------IKASDPDLDRNARI 489



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           A LK +L P  G++  ++PLD+E +  Y + V A +  G  A C V V +LD NDN P  
Sbjct: 290 ANLKFSLDPESGIISIREPLDFEESTSYMMLVEAKDGGGLLAHCKVEVDVLDENDNDP-- 347

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            +++ T   S   PI    L  T + L+  A+  + E+
Sbjct: 348 -EISLTSVFS---PIPEDSLPGTVIALISVADRDEGES 381



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y VL+ +K LD E+    +L +TA +           + ++I D NDN P FTQ  Y   
Sbjct: 193 YPVLIQRKSLDRESEHSLHLILTALDGGEPFKTGTAQIWINITDANDNPPIFTQETYRSS 252

Query: 77  VSEAAPIGALV 87
           + E  PIG+LV
Sbjct: 253 LKETTPIGSLV 263


>gi|410914515|ref|XP_003970733.1| PREDICTED: protocadherin Fat 4-like [Takifugu rubripes]
          Length = 5463

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    +PLDYE  + Y L+  A +  G  +   V  ++LD NDN P F    Y+
Sbjct: 2359 LNPVTGVFNVTRPLDYEVQQFYILTAKARDGGGQASTVRVYFNVLDVNDNPPAFNTSVYS 2418

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSE+ P G+ ++T       + A D D   NA L
Sbjct: 2419 TSVSESLPAGSSIVT-------VGASDADDGPNAQL 2447



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL   +PLD+E  + +NL V+AT+       +  SV VH+ D NDN P F    Y   V
Sbjct: 3612 GVLALAQPLDFEEKQQHNLRVSATDGGWISKTSYVSVTVHVTDVNDNPPVFEPDEYFPVV 3671

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P G  V+  T       A D DS  NA++
Sbjct: 3672 QENVPSGTTVVKMT-------ATDGDSGANAVM 3697



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T +PLD E    Y L V AT+           V++++LD NDN P F+++ ++  V
Sbjct: 3191 GEIRTTRPLDREKVAQYGLKVKATDRGLPQKNMAVRVLINVLDVNDNAPRFSKI-FSATV 3249

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            +E AP G  V   T+        D+D+ +NA+
Sbjct: 3250 AENAPAGYTVTRVTTT-------DEDAGSNAV 3274



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL T+K LD E+   YNL +T  ++A        +   V V +LD ND  P FT    T
Sbjct: 2466 GVLKTQKALDRESQSFYNLVITVNDLAPPPMTRFTSTAQVSVILLDVNDCPPTFTSQKMT 2525

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  P+  +V         + A D DS  N+ ++
Sbjct: 2526 -YIQENTPVDTVV-------FAVHASDSDSGPNSYVE 2554



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T+  LDYEA ++Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3711 IDPNTGTITTQGFLDYEAKQVYHLTVKAFNVPDEERCSFANVNIQLKGANEYVPRFVSKQ 3770

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3771 YYFEISEAAPKGTVV 3785



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LDYE   +Y L+V+A +        S  VI+ + D NDN P FT  
Sbjct: 1832 SISPSTGSIFLVKKLDYETQSVYRLNVSAKDNGRPPRSSSIPVIIQVRDFNDNPPIFTPG 1891

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +    + E  P    V       ++I A D D++ N  L+
Sbjct: 1892 DIFKSIPENLPASTSV-------MMITAHDTDADINGQLE 1924



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTG 75
            P G L  K  LD E    YNL + A + A      SV V +L  D NDN P F   NY  
Sbjct: 1516 PDGQLYIKAELDREIQDRYNLVLVAKDRAVEPLSASVNVSVLLDDVNDNRPLFNSTNYVF 1575

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            + +E    G+LV         + AEDKD
Sbjct: 1576 HFAEEQKRGSLVGR-------VFAEDKD 1596



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 28   LDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LDYE T  Y+L + A + AGA+   + C + + ILD NDN P F + + +  V E   IG
Sbjct: 1741 LDYETTSSYSLKIIAVD-AGAEPLSSSCMLSISILDENDNAPSFPKPSVSVDVLENMRIG 1799

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV +       + A D DS  NA
Sbjct: 1800 ELVAS-------VTATDADSGQNA 1816



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILD 60
            +P  LF I     H  +G++    PL+   T  Y + V A ++   K   S+  I+ + D
Sbjct: 1403 NPRGLFHI-----HEKHGLITLTGPLEV-TTSSYEVEVLAEDLGVPKHTSSLVLIISVYD 1456

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   + E+ P+ +           + A DKDS  N 
Sbjct: 1457 VNDNSPVFDQLSYEVTILESEPVNSRFFK-------VEATDKDSGFNG 1497



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 26   KPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
            + +D EA   Y L +TAT+ +G       C+V V + D NDN P FT  ++   ++E AP
Sbjct: 2788 QTVDREARSRYVLLITATD-SGVPPLSGTCTVTVSVSDVNDNAPVFTASSFHTTITEDAP 2846

Query: 83   IGALVLTNTSLPLVIRAEDKDSETNALL 110
             G  V       L++ + D D   N ++
Sbjct: 2847 TGTDV-------LLVNSSDADVGNNGVI 2867



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G ++ K+ LDYE+ R Y+L++ A +  +          + +LD NDN P     Y
Sbjct: 774 IDPKTGTVVIKEGLDYESKREYSLTIHAVDNGVPSLSGRAEATIKLLDVNDNDPVVKFRY 833

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A IG +V
Sbjct: 834 FPTTSKFASVDENAQIGTVV 853



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQ 70
            +++P  G ++T   LD E    Y L V AT+     G  +  +V V + D NDN P F  
Sbjct: 2877 SINPATGQIITSSLLDREERANYQLLVVATDGGQPQGLSSSATVSVTVADINDNPPRFHH 2936

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y  ++  +   G+LV         +   D+D+  NA L
Sbjct: 2937 HPYVTHIPASTAAGSLV-------FAVTVTDEDAGANAQL 2969



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 10/93 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G + T  PLD E    Y L V A +  G ++    IV +  +D  DN P F+Q  Y+  +
Sbjct: 1212 GKIGTLVPLDREEKTTYQLQVAAADGGGLRSHTQAIVTVTVIDTQDNPPVFSQKVYSFVM 1271

Query: 78   SEAAPIGALVLT--------NTSLPLVIRAEDK 102
             E   +G ++ T        NT++  +I + D+
Sbjct: 1272 FENVGVGTVIGTVSATTVDLNTNISYLITSGDQ 1304



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L++   LD E T  Y L +   +    K      V V I D NDN P F Q  Y   V E
Sbjct: 679 LVSTGGLDREVTPFYQLLIEVEDKGEPKKFGYLQVNVTIQDINDNPPSFEQDQYQTSVFE 738

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A +G+ VL        + A D D   NA
Sbjct: 739 DAAVGSSVLQ-------VAASDGDEGANA 760



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G +   +PL+ E T  Y + V+A + +G      V + I D NDN P F++ +Y 
Sbjct: 3288 INPSTGDITVSRPLNREDTDHYIVKVSAHD-SGWTVSTDVTIFITDINDNAPRFSRPSYY 3346

Query: 75   GYVSEAAPIGALV 87
                E   +G+LV
Sbjct: 3347 LDYPELTEVGSLV 3359



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 28  LDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           LD E    YNL+V+ ++        +  S+++ + D ND+ P F +  Y   VSE  P G
Sbjct: 902 LDRERISSYNLTVSVSDNGRPVARSSFASLVIFVNDINDHPPIFQETEYRVDVSEDIPKG 961

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
           + +         + A D DS  NA L
Sbjct: 962 SYIKG-------VSATDGDSGQNANL 980



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILD 60
            H  ++F+I     +   G +    PLD E T +YNL+V A +     A  S  VIV++ D
Sbjct: 3916 HDQKIFSI-----NAKTGQVSVAAPLDRETTPVYNLTVLAVDTGTPPATGSTTVIVNLED 3970

Query: 61   RNDNTPYFT 69
             NDN P  T
Sbjct: 3971 INDNGPTLT 3979



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 54   VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V V+I D NDN P FT+  Y   VSE+AP       N +  L + A D D   N L+
Sbjct: 1664 VQVYIQDINDNQPKFTKDIYQASVSESAP-------NVTQLLRVSASDVDENRNGLV 1713



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFT 69
            K  L    G +     L  +  +I+   VTAT+       A  SV + + + N +TP F+
Sbjct: 3499 KFKLDKTSGWITVASSLVSDVNKIFLADVTATDRGNPPLSARTSVRIAVTEENHHTPEFS 3558

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q   +  V E+  +G  + T       + A DKD E N ++
Sbjct: 3559 QSQVSATVPESIAVGTAIRT-------LSARDKDREMNGVI 3592



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLN 72
            GV+ T + +D E + ++ L+V AT+ A        A+ +V + + D+NDN P F   N
Sbjct: 1944 GVIYTNQEVDREFSNLFELTVKATDQAVPLESRRFALKNVTIWVTDQNDNIPTFMSQN 2001


>gi|326927331|ref|XP_003209846.1| PREDICTED: neural-cadherin-like [Meleagris gallopavo]
          Length = 2531

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP  GVL T +  D E  R Y ++VTAT+ A      +C + V ILD+NDN P F    
Sbjct: 474 IHPDTGVLTTVQVFDREKQREYPVTVTATDQAAEPLIGMCQINVLILDQNDNDPRFENTR 533

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y  ++ E   +G      TS  L + A D D  +NA++
Sbjct: 534 YEYFLREDTRVG------TSF-LRVTAHDDDYSSNAVI 564



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  L P        +L  + LDYE T+ + L V A N+A     A  ++ +++ D 
Sbjct: 677 PVRFY--LTPNRDDGSASILVAELLDYETTKNFLLRVRAQNVAAVPLAAFTTIYINVTDV 734

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVL 88
           NDN P+FT   Y   V+E A IG  V+
Sbjct: 735 NDNVPFFTSSIYEASVTEGADIGTFVI 761



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            + P  G +   +PLDYE T+IY + + A++    +     I++++++ND +P F+   Y
Sbjct: 905 GVQPETGAIFIAQPLDYEETKIYEIHLLASD-GKWEDYAVTIINVMNKNDESPVFSINEY 963

Query: 74  TGYVSE 79
            G + E
Sbjct: 964 YGSIIE 969



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL--NYTG 75
            G +   K LD E   ++   V AT+  G        VI+++ D NDN P FT +  +  G
Sbjct: 1015 GSIYAHKVLDREERALWRFVVLATDEGGEGLTGFADVIINVWDINDNAPMFTCMPDDCNG 1074

Query: 76   YVSEAAPIGALVL 88
             V E +P   LV+
Sbjct: 1075 SVFENSPADTLVM 1087



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 54  VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V V I D NDN P FTQ  Y   V E   +G+ V+T       + A D+D  TNA L
Sbjct: 842 VRVFITDVNDNKPVFTQSVYEVNVDEDQDVGSTVIT-------VNANDEDEGTNAKL 891



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 19  YGVLLTKKPLDYEA-TRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           +G +   + LDYE    +Y   + A +          +V +H+ + ND  P F+Q  Y  
Sbjct: 261 HGTIFPARELDYERPNHLYEFIIMAVDKGEDPKTGTATVRIHVSNVNDEAPEFSQTIYRS 320

Query: 76  YVSEAAPIGALVLT 89
           +VSE A    LV T
Sbjct: 321 FVSEDAGPNTLVAT 334


>gi|149640037|ref|XP_001512989.1| PREDICTED: protocadherin-19 [Ornithorhynchus anatinus]
          Length = 1098

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTG- 75
           G++    PLDYE  R Y L V A +  G  AV   C V VH+LD NDN P    L+  G 
Sbjct: 296 GLVTVGGPLDYEEARSYELDVQAKDR-GPNAVPAHCKVTVHLLDVNDNAPVINLLSVHGE 354

Query: 76  --YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSEAAP G ++        ++RA D+D+  N  +
Sbjct: 355 QVEVSEAAPPGYVI-------ALVRASDRDAGANGRV 384



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRNDNTPYFTQLNYTG 75
           +  +L    LD E    YNL++ A +  GA A+ S     V + D NDN P F++  Y  
Sbjct: 402 FSTVLVDGRLDREQRDRYNLTLQARD-GGAPALQSAKSFTVRVTDENDNPPRFSEPRYRV 460

Query: 76  YVSEAAPIGALVLTNTS 92
            V E    GA +L+ T+
Sbjct: 461 AVPENNTPGAYLLSVTA 477



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ ++PLD E    Y   +TA +      +   ++ + + D NDN P F Q  Y   
Sbjct: 187 FAELVVERPLDRETQARYTYRLTARDGGDPPRQGSAALTIRVTDSNDNHPVFAQPAYAVS 246

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E AP    V+        + A D D  TN 
Sbjct: 247 LPEDAPPRTPVIQ-------LNASDPDEGTNG 271


>gi|345328660|ref|XP_001507967.2| PREDICTED: protocadherin gamma-A10 [Ornithorhynchus anatinus]
          Length = 812

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E    YN++VTAT+       A   + + +LD NDN P F Q +Y+ Y
Sbjct: 401 YYTLVTDGVLDRELVSDYNVTVTATDRGSPPLSAHTHISLQVLDTNDNPPVFKQRDYSVY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
           VSE  P GA +         + A+D DSE NA +  S N
Sbjct: 461 VSENNPRGASIFR-------VAAQDPDSEENARVTYSIN 492



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G++   + LDYE +  Y + V A +    +A   V+V ++D NDN P  T  +  
Sbjct: 294 LQPQTGIISIMRSLDYEESESYKMEVQAQDGGNLQAKAKVLVTVVDVNDNAPEVTITSLF 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             VSE +P G ++        ++   D+DS  N L+  S
Sbjct: 354 NPVSEDSPSGTVI-------ALLNVHDRDSADNGLISCS 385



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 7/78 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
           L+ ++ LD E   +++L +TA  + G   V S    V V +LD NDN P FTQ  Y   V
Sbjct: 194 LVLERVLDREEEAVHHLVLTA--LDGGDPVRSGTARVRVTVLDTNDNAPVFTQSVYQVKV 251

Query: 78  SEAAPIGALVLT-NTSLP 94
            E AP+G  +LT NT+ P
Sbjct: 252 REDAPVGTRILTLNTTDP 269


>gi|194219808|ref|XP_001917815.1| PREDICTED: protocadherin gamma-B1-like [Equus caballus]
          Length = 812

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y L V A +     A C+V + I+D+NDN P  T ++Y+
Sbjct: 292 LNPNTGDITTNGTLDFEETSRYILGVEAKDGGVHTAHCNVQIDIVDQNDNAPEVTFMSYS 351

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++ E + +G+++        +I+ +D+DS  N L+
Sbjct: 352 NHIPEDSDLGSVI-------ALIKVQDQDSGQNGLV 380



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E    YN+++TAT+       +  SV +HI D NDN P F Q +Y  Y
Sbjct: 399 YYKLVIDSALDREQMAEYNVTITATDKGKPPLSSSTSVTLHIGDVNDNAPVFHQASYVVY 458

Query: 77  VSEAAPIGALV 87
           V+E  P GA +
Sbjct: 459 VAENNPPGASI 469



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    + L +TA  M G          + + + D NDN P F+Q +Y 
Sbjct: 189 YPELLLEKPLDREQQSSHRLILTA--MDGGDPPLSGTTQIRIQVTDANDNAPLFSQESYR 246

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 247 VSLQENVPPGTSVLR-------VMATDQDEGVNA 273


>gi|209489409|gb|ACI49172.1| hypothetical protein Csp3_JD01.004 [Caenorhabditis angaria]
          Length = 4291

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  + P  G ++  +PLD+E +R    ++     A  K   ++IV+++D NDN P F+Q 
Sbjct: 1382 KIRVEPSSGNVIIMEPLDFETSRQIR-AIVQVRQANFKNFATLIVNVIDENDNAPKFSQS 1440

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            N   +V E+ P+G+LV   T+        D D+  N +L
Sbjct: 1441 NQIAFVDESDPVGSLVAKVTAF-------DADNGENGML 1472



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+     LDYE    R Y L + A +  G K+   V + I D NDN+P F   N T  +
Sbjct: 3234 GVISVNGNLDYEIEEMRKYRLKIEAKDGGGLKSEVDVDIEIEDINDNSPIFEDCNMTAVI 3293

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+A I ++VL+       I  +D D   N+
Sbjct: 3294 QESANINSIVLS-------INVKDLDGPMNS 3317



 Score = 42.0 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 8    FAILKPA----LHPPYGVLLTKKPLDYEATRI--YNLSVTATNMAGAKAVCSVIVHILDR 61
            + I++P     +HP  G ++  K L  E   +   N SV      G      +I+ I   
Sbjct: 1575 YQIVEPCPYFDVHPLSGAVVLSKWLTRERNEVKSVNCSVRVIGSEGESDEAKIILKIRRT 1634

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLT-NTSLPLVIRAEDKDSETNALL 110
            N   P F Q  Y   + E +PIG+ V   + + PL++ A D D+  N L+
Sbjct: 1635 NQYAPRFRQQVYNAQIRENSPIGSPVFAISDNSPLIVNAVDLDNGPNGLV 1684



 Score = 40.4 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 16/104 (15%)

Query: 11   LKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
            LKP+       L P  G+L   + LD+E  +   + + A +       A   + + ++D 
Sbjct: 3115 LKPSKMNKMVKLDPNSGILKLAEGLDFEKLQKIEIFIEAKDSGNPPLTAETKIEIEVMDE 3174

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            NDN P F    Y   V E +  G  +L        + AEDKDSE
Sbjct: 3175 NDNVPIFKNTTYFATVLEHSKNGTEILK-------VEAEDKDSE 3211



 Score = 40.4 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)

Query: 8    FAILKP----ALHPPYGVLL-TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            ++I+ P    A+H   G++  T   +D E   +  L V A +M    A  +V +H+ D N
Sbjct: 1889 YSIINPRDEFAIHSGTGIITSTGIAVDREIEAVIRLVVQARSMEQI-AQTTVEIHVEDLN 1947

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            D  P F  L Y   VS  A IG  +       +V+RA DKD   N  +  S++
Sbjct: 1948 DEIPMFVSLPYDVSVSMDAKIGDEI-------IVVRAIDKDEGLNGQIKYSSS 1993



 Score = 39.3 bits (90), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   + L+Y   +IY + + A +  G +A  ++ + ++D ND  P F   +Y+  +S 
Sbjct: 2420 GRIHVSRVLNYHNDKIYQIPLVAEDAVGRRAFATLTLSVIDINDKPPVFVLSSYSCSMSA 2479

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGST 114
             A  G  VL  ++       ++ DS   +LLD S+
Sbjct: 2480 LAKEGDTVLMVSA----TDDDEGDSIEYSLLDDSS 2510



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-----VIVHILDRNDNTPYFTQLNYT 74
            G +  +KP+D+E  + +   V A +M G+ +  S     VIV ILD ND  P F + + T
Sbjct: 1701 GAIRVRKPIDFERIKEWRFYVNAHDM-GSPSRSSLMPALVIVTILDENDEPPKFLEKSIT 1759

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             +     PI      N  +  +  A+D D+
Sbjct: 1760 SF-----PIYLPTANNIRISPIQNAKDIDT 1784



 Score = 37.0 bits (84), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  GVL+  K LD E    Y L +  ++    K   S IV+++  D+NDN P F +  
Sbjct: 3026 IEPKSGVLMVVKMLDREEIGEYRLDIVVSD---GKFEDSAIVNVIVADQNDNPPIFERKV 3082

Query: 73   YTGYVSEAAPIG 84
            Y+  V E+  IG
Sbjct: 3083 YSMKVMESESIG 3094



 Score = 35.8 bits (81), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++HP  G +   K L+ +    ++L V AT+ A     A  +V + +  ++   P F+  
Sbjct: 2513 SVHPKQGTVTVAKKLEDKVGNSFSLIVKATDSANPPHHATTTVEIQVAKKDTPVPRFSNS 2572

Query: 72   NYTGYVSEAAPIGALV 87
            +Y   VSE A IG+++
Sbjct: 2573 HYLFSVSEDASIGSVI 2588


>gi|260795106|ref|XP_002592547.1| hypothetical protein BRAFLDRAFT_133692 [Branchiostoma floridae]
 gi|229277768|gb|EEN48558.1| hypothetical protein BRAFLDRAFT_133692 [Branchiostoma floridae]
          Length = 1894

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 22/113 (19%)

Query: 8    FAILKP------ALHPPYGVLLTKKPLDYEATRIYNLSVTAT------NMAGAKAVCSVI 55
            FAIL+       A+    G + T   LD E+   Y L++TAT      N+ G+    +V+
Sbjct: 1506 FAILEGDDNNEFAIDSSTGTIRTASTLDRESIESYTLTITATDGGTPTNLTGSG---TVL 1562

Query: 56   VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V ILD NDNTP  TQ +YT  VSE    G  V+        + A D D++ NA
Sbjct: 1563 VTILDVNDNTPVLTQASYTASVSEGVTAGTSVVQ-------VVASDDDADENA 1608



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++   G++ T   +D E   + NL V AT+       ++C V V++ D NDNTP F  L 
Sbjct: 1414 INSTTGLISTSADVDRETLALNNLVVQATDSGTPAKSSLCRVKVYLNDLNDNTPSFVPLE 1473

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   V E A +G LV      P  ++A D D  TNALL
Sbjct: 1474 YVVSVLENAAVGTLV-----TP--VQALDPDESTNALL 1504



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
           A++   G +   K LD E T  Y+L V  ++ +GA       +V V + + ND  P F++
Sbjct: 453 AINDTSGEITIAKDLDLEVTSFYSLGVQVSD-SGALSLTGTATVYVTVTNVNDFVPAFSE 511

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            +Y+  VSE+  +G  V       +V   ED D E
Sbjct: 512 SSYSFNVSESESVGTEV-----GQVVASDEDTDEE 541



 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 12/103 (11%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNT 65
           L   + P  GVL   K LD E    Y+L V A +   +      +   V + ++D NDN 
Sbjct: 555 LAFGIDPVSGVLSVAKKLDRETIASYSLEVLAIDGGDSFGTYRNSTVRVNITVIDENDNP 614

Query: 66  PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           P F  L     V E+AP G      TSL L +   D D++ N 
Sbjct: 615 PTFDSLVMYTSVLESAPEG------TSL-LQLNCTDADADANG 650



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTA----TNMAGA-KAVCSVIVHILDRNDNTP 66
            K  +    G L    PLD E T  Y L+V A    +N + A     +V + + D NDN P
Sbjct: 1090 KFVIEENTGELSVALPLDREYTDSYTLTVKAMDSPSNSSQALSNFTTVNITLEDVNDNHP 1149

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             FT   YT  V E A +G+ +L        + A D D   N++LD
Sbjct: 1150 IFTPSVYTTSVLEGAAVGSQLLQ-------LTATDADLGNNSVLD 1187



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYF 68
           K AL    G L T  PLD E T  Y L++ A +   +    A  +V V + D ND TP  
Sbjct: 345 KFALDASTGALQTVAPLDRETTSSYTLTLVAQDGGVSLTRSATTTVFVTVSDVNDVTPVC 404

Query: 69  TQLNYTGYVSEAAPI 83
           +   Y   +SE A +
Sbjct: 405 SPSFYAVTISEGADV 419



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            +L+    LD+     ++L+VTAT+       +  +V+V++L  N+ +P F     T +VS
Sbjct: 1205 ILVLASGLDHSVRSYFSLTVTATDRGVPSLSSTANVVVNVLAENNYSPVFDNGTNTVWVS 1264

Query: 79   EAAPIGALV 87
            E A +G  V
Sbjct: 1265 EDAAVGTTV 1273


>gi|345320248|ref|XP_001517550.2| PREDICTED: protocadherin gamma-A7-like, partial [Ornithorhynchus
           anatinus]
          Length = 585

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E    YN++VTAT+       A   + +H++D NDN P F Q  Y+ Y
Sbjct: 306 YLRLVTDRSLDREMVSKYNVTVTATDRGSPPLSAQTHIFLHVIDTNDNPPAFEQKAYSLY 365

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA V         + A D DSE NA
Sbjct: 366 IPENNPRGASVFR-------VTARDPDSEENA 390



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LD+E +  Y + + + +  G +A   V+V + D NDNTP  T  + T  V E +P G ++
Sbjct: 212 LDFEESEFYEMEIQSRDGGGLQARAKVLVTVGDVNDNTPDVTITSLTSSVPEDSPPGTVI 271

Query: 88  LTNTSLPLVIRAEDKDSETNALL 110
                   ++   D+DS  N L+
Sbjct: 272 -------ALLNVHDRDSGDNGLV 287



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
           L+ ++ LD E   +Y+L +TA++  G   V S    V V ++D NDN P FTQ  Y   V
Sbjct: 99  LVLERALDREEEAVYHLILTASD--GGDPVLSGTARVRVTVVDVNDNAPVFTQSVYQVRV 156

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P+G  V+T       + A D D   N 
Sbjct: 157 REDVPMGTRVVT-------VNATDPDEGVNG 180


>gi|348511876|ref|XP_003443469.1| PREDICTED: protocadherin Fat 4 [Oreochromis niloticus]
          Length = 4971

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  G     +PLDYE  + Y L+  A +  G  +   V  ++LD NDN P F    Y+
Sbjct: 1867 LNPVTGFFNVTRPLDYETQQYYILTAKAQDGGGQASTVRVYFNVLDVNDNAPIFNTTTYS 1926

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSE+ P G+ ++T       + A D D   NA L
Sbjct: 1927 TSVSESLPPGSSIIT-------VGATDADDGQNAQL 1955



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E    Y L++TA +        S  V++H+ D NDN P FT  
Sbjct: 1340 SISPNTGSIFLVKKLDFETQSFYKLNITAKDNGRPPRSSSIPVVIHVRDFNDNPPVFTPG 1399

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PI A V+T       I A+D D++ N LL
Sbjct: 1400 DIFKSIPENLPISASVMT-------ITAQDTDADINGLL 1431



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T +PLD E   +Y L V AT+  +     +  V++++LD NDN P F+++ ++  V
Sbjct: 2699 GEIRTTRPLDREKVALYTLKVKATDRGLPPKNTIVKVLINVLDVNDNAPRFSKI-FSATV 2757

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            +E AP+G  V   T+        D+D+ +NA+
Sbjct: 2758 AENAPVGYTVTRVTTT-------DEDAGSNAI 2782



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            AL+   GVL    PLD+E  + + L V+AT+       +  SV +H+ D NDN P F   
Sbjct: 3114 ALNSRTGVLSLAHPLDFEEKQQHELRVSATDGGWIAKTSYVSVTIHVTDVNDNPPVFDPD 3173

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E  P G  V+        + A D DS  NA++
Sbjct: 3174 EYFPIVQENVPSGTTVIK-------LNATDLDSGANAVM 3205



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL TKK LD E    YNL VT  ++A        +   V + +LD ND  P FT    T
Sbjct: 1974 GVLQTKKSLDRETQSFYNLVVTVNDLAPPPITRFTSTAQVSIILLDVNDCPPTFTSQKMT 2033

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  P+  +V T        +A D DS  N+ ++
Sbjct: 2034 -YIQENTPVDTVVFT-------TQATDADSGPNSYVE 2062



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF I     H  +G++    PL+   T  Y + V+A++M   +   S+I  V + D
Sbjct: 911  NPKGLFHI-----HEKHGLITLTGPLEI-TTSSYEIEVSASDMGVPQHTSSLILIVSVYD 964

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   + E+ P+ +           + A DKDS  N 
Sbjct: 965  VNDNSPVFDQLSYEVIILESEPVNSRFFK-------VEATDKDSGLNG 1005



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    YNL VTA + A     A  +V V + D NDN P F   NY  
Sbjct: 1024 PDGQLYIKAELDREIQDRYNLVVTAKDRAVEPLSATVNVTVILDDVNDNRPLFNSTNYVF 1083

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            +  E    G+LV         + AEDKD
Sbjct: 1084 HFEEEQKRGSLVGQ-------VFAEDKD 1104



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 28   LDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LDYE+T  Y+L + A + AGA    + C + + ILD NDN+P F + + +  V E   IG
Sbjct: 1249 LDYESTSSYSLKIIAVD-AGAVPLSSSCMLSISILDENDNSPIFPKSSLSVDVLENMRIG 1307

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV +       +   D DS  NA
Sbjct: 1308 ELVAS-------VTGTDADSGQNA 1324



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T+  LDYEA ++Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3219 IDPNTGTITTQGFLDYEAKQVYHLTVKAFNVPDEERCSFANVNIQLKGANEYVPRFVSKQ 3278

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SE+AP G +V
Sbjct: 3279 YYFEISESAPKGTVV 3293



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G + T  PLD E    Y L VTA + +G ++    I  V ++D  DN P F+Q  Y+  +
Sbjct: 720 GKITTLVPLDREEKTAYQLQVTAADGSGLRSHTPAIVTVTVIDTQDNPPVFSQKVYSFVM 779

Query: 78  SEAAPIGALVLT--------NTSLPLVIRAEDK 102
            E   +G ++ T        NT++  +I + D+
Sbjct: 780 FENVGVGTVIGTVSATTVDLNTNISYLITSGDQ 812



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQ 70
            +++P  G ++T   LD E    Y L V AT+     G  +  +V V + D NDN P F  
Sbjct: 2385 SINPATGQIITSSLLDREDRANYQLLVVATDGGQPEGLSSSATVSVTVADINDNPPRFHH 2444

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y  ++  +   G+LV         +   D+DS +NA L
Sbjct: 2445 HPYVTHIPASTAAGSLV-------FAVTVTDEDSGSNAQL 2477



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G ++ K+ LDYE+ + Y+L++ A +  +          + +LD NDN P     Y
Sbjct: 282 IDPKAGTIIIKESLDYESKKEYSLTIHAVDNGVPSLSGRTEATIKLLDVNDNDPVVKFRY 341

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A IG +V
Sbjct: 342 FPTTSKFASVDENAQIGTVV 361



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L++   LD E T  Y L +   +    K      V V I D NDN P F Q  Y   V E
Sbjct: 187 LVSTGGLDREVTPFYQLLIEVEDKGEPKKFGYMQVNVTIQDINDNPPIFEQDQYQTSVFE 246

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A +G+ +L        I A D+D   NA
Sbjct: 247 DAAVGSSILE-------ITASDQDEGANA 268



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     L  +  +I+ + +TA++       A  +V + + + N +TP F+Q   +  V
Sbjct: 3015 GWITVASSLTSDMNKIFQIKITASDKGNPPLSAQTTVSIAVTEENHHTPEFSQSQISATV 3074

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E+  +G  + T       + A DKD E N L+
Sbjct: 3075 PESLAVGTAIRT-------LSARDKDKEMNGLI 3100



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G +   +PL+ E T  Y + V+A + +G      V V I D NDN P F++ +Y 
Sbjct: 2796 INPNTGDITISRPLNREDTNHYIVKVSAHD-SGWTVSTDVTVFITDINDNAPRFSRPSYY 2854

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                E   +G+LV         + A D D + N  +
Sbjct: 2855 LDYPELTEVGSLVTR-------VSATDPDEDFNGKI 2883



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYF 68
            ++ P  G++ T K +D E + ++ L++ AT+ A        A+ +V + + D NDN P F
Sbjct: 1446 SIDPSTGLIYTSKEIDREFSNLFELTIKATDQAFPVEFRRYALKNVTIWVTDLNDNVPTF 1505

Query: 69   TQLN 72
               N
Sbjct: 1506 VSQN 1509



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   + LD E    Y L +TAT+          +V V + D NDN P FT   +   +
Sbjct: 2290 GQLSLTETLDREVQEKYILLITATDSGTPSLSGTGTVTVMVDDVNDNVPVFTSSIFHTTI 2349

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G  V       L++ + D D   N ++
Sbjct: 2350 MEDAPTGTDV-------LLVNSSDADVGVNGVI 2375


>gi|344238297|gb|EGV94400.1| Protocadherin beta-6 [Cricetulus griseus]
          Length = 2168

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++ K  LDYE  + Y L++ A +  G  A C+V+VH+LD NDN P     +  
Sbjct: 1671 INPFSGEIVLKALLDYETVKTYKLNIQAVDGGGLSARCTVLVHVLDINDNAPELIISSLV 1730

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V E AP   L         V R  D+DS  N 
Sbjct: 1731 NEVVENAPETVLA--------VFRINDRDSGENG 1756



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
             L+P+    Y  LLT+KPLD E T  YN+++T  +M     +   +V V + D NDN P 
Sbjct: 1493 FLRPSEENFY-TLLTQKPLDRETTAEYNITITVVDMGSPMLRTQVNVTVEVSDVNDNAPA 1551

Query: 68   FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 1552 FTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 1585



 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 18/113 (15%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHIL 59
            S P  L  +LKP++   Y  L+T+ PLD E+   YN+++T T++   +     ++ V + 
Sbjct: 1165 SIPHDLPFVLKPSVENFY-TLVTEMPLDRESHTEYNITITVTDLGTPRLTTQHTITVQVS 1223

Query: 60   DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 1224 DVNDNAPAFTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 1265



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 18/104 (17%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYF 68
            L+P++   Y +L+T+  LD E+   YN++++ T++   +     ++ V + D NDN+P F
Sbjct: 1770 LRPSVDNFY-ILMTEGALDRESRAEYNITISVTDLGTPRLTTQHTITVQVSDVNDNSPAF 1828

Query: 69   TQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            TQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 1829 TQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 1861



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +L+P+    Y  L T   LD E+   YN+++T  ++   +     ++ V + D NDN P 
Sbjct: 377 LLRPSTENFY-TLETDGALDRESRAEYNITITVNDLGTPRLTTQHTITVQVSDVNDNAPA 435

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 436 FTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 469



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY-FTQLNYTG 75
            G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+    L    
Sbjct: 1292 GQLFALRALDYEALQTFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPFVLYPLQNAV 1350

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E +PIG+L+ T       + A DKD   N 
Sbjct: 1351 QIPEDSPIGSLITT-------VSATDKDIGVNG 1376



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 35/67 (52%)

Query: 16   HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            HP  G +  K+ LD+E T+ Y +++ A +       C++++ ++D ND+ P      +  
Sbjct: 1396 HPLTGEVRLKEQLDFEKTQSYEVNIEARDAGTFSGKCTILIQVVDVNDHAPEIVLSAFNN 1455

Query: 76   YVSEAAP 82
             +SE  P
Sbjct: 1456 PISENLP 1462



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           G +  +  LD+EA + Y++ V A +  G    CS++V +LD NDN P
Sbjct: 284 GEIRLRSTLDFEAFQSYHVGVEAIDGGGLTGKCSLVVQVLDVNDNAP 330



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+  K LD+E      L++TA +           + + +LD NDNTP F+Q  Y   V E
Sbjct: 180 LVLDKALDHEEQAQLRLTLTALDGGSPPRSGTTEIQILVLDINDNTPEFSQELYEVQVPE 239

Query: 80  AAPIGALVLT 89
             P+G L++T
Sbjct: 240 NNPVGTLLIT 249



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 17/100 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
            G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 1888 GQLFALRALDYEALQTFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPFVLYPLQNAS 1946

Query: 75   GYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               +E    AA  G LV         + A D+DS  NA L
Sbjct: 1947 APCTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 1979



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+
Sbjct: 496 GQLFALRALDYEALQTFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPF 545



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
            L+  + LD E    + L++TA +        + +V IL  D NDN+P F Q  Y     E
Sbjct: 975  LVLDQTLDREELAEFTLTLTALDGGSPPRSGTALVRILVLDINDNSPEFVQSLYKVQSYE 1034

Query: 80   AAPIGALVL 88
              P+G+LV+
Sbjct: 1035 NTPVGSLVV 1043


>gi|355782920|gb|EHH64841.1| hypothetical protein EGM_18162, partial [Macaca fascicularis]
          Length = 1661

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 48  MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 107

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 108 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 142



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 175 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 226



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
           GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 795 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 854

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y G VSE A +   VL        ++A DKD+
Sbjct: 855 KFYIGGVSEDARMFTSVLR-------VKATDKDT 881



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 477 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 536

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 537 EENLPAGTTILQ-------IEAKDVD 555



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 574 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 633

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G+ + T       + AED D
Sbjct: 634 FSKRIYKGMVAPDAVKGSPITT-------VYAEDAD 662


>gi|395504782|ref|XP_003756726.1| PREDICTED: protocadherin gamma-B6 [Sarcophilus harrisii]
          Length = 802

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
           + K  L P  G ++ K+ LD+E T++Y + + A +     A C V++ + D NDN P  T
Sbjct: 280 LYKFRLDPTTGEIIIKQTLDFEETKVYTMDIEAKDAGSLVAQCKVVLEVRDENDNAPEIT 339

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++ +  + E    G ++        +I+  DKDSE N 
Sbjct: 340 LVSLSSTIPEDTVSGTVI-------ALIKTYDKDSEENG 371



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  LLT   LD E T  YN+++TAT+        S  + ++I D NDN+P F Q +Y  Y
Sbjct: 392 YYKLLTDGDLDREQTPEYNITMTATDKGNPALSTSKTISLYISDINDNSPIFLQSSYVVY 451

Query: 77  VSEAAPIGALV 87
           V E  P G+ +
Sbjct: 452 VPENNPSGSCI 462



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  ++ +K LD E    ++L +TA +  G   V S    + + + D NDN P F+Q  Y 
Sbjct: 182 YPEMVVEKSLDREIQSFHHLILTAVD--GGDPVLSGTTQISIRVTDANDNPPIFSQDVYR 239

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             VSE  P G+ VL        + A DKD   NA
Sbjct: 240 ANVSENLPPGSSVLQ-------VTATDKDEGINA 266


>gi|54013442|dbj|BAD60810.1| protocadherin2-gamma-v5-sCP1-2 [Danio rerio]
          Length = 850

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE+   Y L++ A +  G    C +++ + D NDN P    ++++  ++E +P+G  V
Sbjct: 318 LDYESQNSYQLNINARDKGGLSDTCKIVIDVTDENDNPPTIQLMSFSNTIAENSPVGTTV 377

Query: 88  LTNTSLPLVIRAEDKDSETNALLDGSTN 115
                   VI  ED DS  N L+  S N
Sbjct: 378 -------AVINVEDADSGKNGLVHFSIN 398



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E    YN+++  ++  G+ A  S   + V I D NDN P F    Y  
Sbjct: 412 YYSLITDDMLDRETVTEYNITILVSDQ-GSPARHSNKTLNVKISDVNDNPPKFGSDEYKT 470

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E    G  +LT       ++A D D   NA L
Sbjct: 471 FVNENNSPGVTILT-------VKANDADWGPNAQL 498


>gi|297301374|ref|XP_002805775.1| PREDICTED: protocadherin-15 isoform 6 [Macaca mulatta]
          Length = 1950

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 434



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTVTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|380029055|ref|XP_003698198.1| PREDICTED: LOW QUALITY PROTEIN: cadherin-23-like [Apis florea]
          Length = 1842

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
           +++ ++ F   K A  P  G +   K LDYEA + Y+L++ A +  G  +  ++++ + D
Sbjct: 527 LTYTLRGFGADKFATDPKSGGISVSKALDYEAQKSYSLTMEARDGGGRVSAVNILIELED 586

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NDN P F Q  YT  V E A       T+    + +RA D D  T  
Sbjct: 587 VNDNKPTFEQKEYTRTVREGA-------TSFDPQMFVRATDADGPTQG 627



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNM--AGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            + T   LD E   +    V A++M   GA+   +   V V +LD NDN P F Q  YT  
Sbjct: 1127 IATNTTLDREKQSVLRFYVVASDMPQGGAEQRSTRALVTVDVLDVNDNAPTFEQEAYTAV 1186

Query: 77   VSEAAPIGALVLTNTS 92
            + E AP G  V+  T+
Sbjct: 1187 IPENAPSGVSVVNITA 1202



 Score = 37.7 bits (86), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 3    HPVQLFAILKPALHPPY-------GVLLTKKPLDYEA--TRIYNLSVTAT----NMAGAK 49
            +PVQ F +++      Y       G ++  K LDYEA   +     V A      +    
Sbjct: 983  YPVQRFELVREDDDEGYVNVGVQSGNVVLSKRLDYEALNQKFIQFKVRALARDYEITRKM 1042

Query: 50   AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +  +VIV + D NDN P F Q +Y   V E+     +VL        ++A D DS
Sbjct: 1043 SEANVIVEVQDTNDNNPVFGQKDYKISVLESEKPSKIVLN-------VKATDMDS 1090



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYN--LSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYT 74
           GV++ +K LD E+  +    +S+T   +AG++     +   + +LD NDN P +    Y 
Sbjct: 76  GVVVLRKALDRESQDLIEVIISITDEGIAGSEPNTVSLRREIAVLDENDNPPVYHGRPYA 135

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E A +G L++ + ++ +     D+D   NA
Sbjct: 136 ARVPENAHVGGLLVPSGTITIT----DRDGGVNA 165



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 26  KPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           K LDYE    Y +++ A + A       +A  +V V +LD  D  P F    Y+  + E 
Sbjct: 204 KSLDYERRNSYLINLLAVDGASDVSRRLQARATVAVDVLDVQDQPPVFLNAPYSAALPEN 263

Query: 81  APIGALVLTNTSLPLVIRAEDKDS-ETNALL 110
            P G  +LT       +RA D D+ E   LL
Sbjct: 264 TPAGHTILT-------VRARDGDTGEPRGLL 287


>gi|109089755|ref|XP_001098443.1| PREDICTED: protocadherin-15 isoform 1 [Macaca mulatta]
          Length = 1953

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 434



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.7 bits (86), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTVTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|297301376|ref|XP_002805776.1| PREDICTED: protocadherin-15 isoform 7 [Macaca mulatta]
          Length = 1913

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 303 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 362

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 363 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 397



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 481



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1050 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1110 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1136



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTVTLAIKVLDIDDNSPVFTNSTYTVLV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 792 EENLPAGTTILQ-------IEAKDVD 810



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 829 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 888

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 889 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 917


>gi|195114028|ref|XP_002001569.1| GI16125 [Drosophila mojavensis]
 gi|193912144|gb|EDW11011.1| GI16125 [Drosophila mojavensis]
          Length = 5013

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G +   +PLDY+  + Y+L+++ T++ G K   AV  V + + D NDN P F Q  Y GY
Sbjct: 3136 GAITIMQPLDYDQMQEYHLNISVTDL-GYKPLSAVAMVTIILTDVNDNPPLFNQSEYHGY 3194

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E  P G +V           A DKDS  NA++
Sbjct: 3195 IEENKPSGTIVFQ-------AHATDKDSAKNAII 3221



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            +L+P  G L     LDYE  + Y L V A +        ++ V+  +LD NDNTP F  +
Sbjct: 1816 SLNPQTGALTLTAKLDYEEVQHYILIVQAQDNGQPSLSTTITVYCNVLDLNDNTPLFDPM 1875

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            +Y+  + E  PIG  V+T       + A+D DS  N L++ S
Sbjct: 1876 SYSSEIFENVPIGMEVVT-------VSAKDIDSGKNGLIEFS 1910



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  + PLD E    Y L+V+ ++       +V  +++H++D NDN P+FT   +T 
Sbjct: 929  PDGFLFVRAPLDREERDYYALTVSCSDAGVPSRSSVVPIVIHVIDENDNPPHFTNSTFTF 988

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E AP    V   T++       D+D   NA L
Sbjct: 989  NIPENAPPDTFVGKLTAV-------DRDIGRNAEL 1016



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           P + ++     LD E    YNL+V AT+      K++  +I+++ D ND+ P F +  Y+
Sbjct: 325 PLFHIVRVNGVLDREEISKYNLTVVATDKGTPERKSIAHLIINVNDVNDHEPVFEKSEYS 384

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE AP G  V +       I A D+D+  NA
Sbjct: 385 AVLSELAPTGTFVAS-------IAATDEDTGVNA 411



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L V A +    +     SV++H+LD+NDN P FT+L Y+  V
Sbjct: 2714 GEIYTTMQLDREEMSDYALVVEAVDQGVPQLTGTASVLLHLLDKNDNPPKFTRL-YSLNV 2772

Query: 78   SEAAPIGALVLTNTSLPL 95
            +E A IG  V+  TS  L
Sbjct: 2773 TENADIGTFVICVTSSDL 2790



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            L+P  G+L     LD E    Y L++TA +           + + ILD NDN P F    
Sbjct: 2072 LNPTDGILRVADTLDREIRVNYVLNITARDRGDPPLATQSQLTIKILDENDNIPVFDPKQ 2131

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  V+E A IGA+VL
Sbjct: 2132 YSASVAENASIGAMVL 2147



 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   KP++  A   + L V AT+           VIV + D N + P F  L+Y   V
Sbjct: 3031 GWLTLIKPIEMPANSRFELIVKATDRGVPPQSDQTRVIVVVTDENRHAPEFKPLSYQVIV 3090

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  PIG+ +LT       + A DKD+  N +L
Sbjct: 3091 PENEPIGSTILT-------VSATDKDNGPNGML 3116



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G+L     LD E+  I+ L V A + A     K+  ++ + +LD NDN P FTQ +    
Sbjct: 1164 GLLTLAHRLDRESQEIHRLVVVAKDAALKNPLKSTANITITVLDDNDNAPEFTQSSSEIS 1223

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E +P G  ++         RA D D   N+
Sbjct: 1224 VLETSPSGTELMR-------FRASDADQGVNS 1248



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L  K  LD E   +YN+ +   N         VIV + D NDN P F +  Y+
Sbjct: 1715 LEPTSGKLQLKDTLDRETKDVYNMRIRV-NDGVQYTETDVIVQVDDTNDNPPIFEETVYS 1773

Query: 75   GYVSEAAPIGALV 87
              + E AP G  V
Sbjct: 1774 FDIPENAPRGYQV 1786



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    YNL + A  T +       +V +++ D NDN P FT     GY+
Sbjct: 3453 GEITTAALLDREDIAHYNLVIGAIDTGLPPQTGTATVRINLDDINDNGPTFTSEGLIGYI 3512

Query: 78   SEAAPIGALVLTNTS 92
             E  P G  ++T T+
Sbjct: 3513 PENEPAGTSIMTLTA 3527



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVS 78
            G +L+    DYE  R Y L + A N        +++ VHIL  N+  P F Q  +   VS
Sbjct: 3242 GTVLSAASFDYEERRSYTLHIKAKNPDSIMESYAILHVHILGVNEFYPQFVQPVFHFDVS 3301

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
            E + +G  V +       ++A DKD   +     LL GS+N
Sbjct: 3302 ETSAVGTAVGS-------VQATDKDIGEDGRIYYLLVGSSN 3335



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            G+L   + LD E      L V A N    +        VI+ I D ND  P F    YT 
Sbjct: 3346 GLLHVTRSLDRETQNRVVLMVMAKNYGSIRGNDTDEAQVIISIQDGND-PPEFVDRFYTS 3404

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             + E+AP+G++V T       ++A DKD
Sbjct: 3405 TILESAPVGSVVTT-------VKAIDKD 3425



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 13/93 (13%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYV 77
            VLLT  PLD E    Y L++ A +  G+  + +   V V + D NDN P F    Y   V
Sbjct: 2295 VLLT--PLDREQQSEYILTLVAMD-TGSPPLSNTGIVKVEVQDINDNGPVFELQYYHATV 2351

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  PIG+LVL     P+   A DKD   NA +
Sbjct: 2352 QENLPIGSLVLK----PV---ATDKDVGLNAKI 2377



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L+T+K LD E    Y + V A +    A   A  +V +++LD NDN P F   +Y   
Sbjct: 541 GQLMTRKALDRETMANYEIFVIARDQGAPAPQSATATVYLNVLDINDNNPEFYPKHYIFT 600

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V +     A   +   L L + A D+D   NAL+
Sbjct: 601 VKDQDTDVAHKNSMQVL-LNVTATDRDDGDNALI 633


>gi|297301366|ref|XP_002805771.1| PREDICTED: protocadherin-15 isoform 2 [Macaca mulatta]
          Length = 1783

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 434



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 525



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1094 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1153

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1154 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1180



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTVTLAIKVLDIDDNSPVFTNSTYTVLV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 836 EENLPAGTTILQ-------IEAKDVDLGAN 858



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 873 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 932

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 933 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 961


>gi|85725291|gb|ABC79263.1| protocadherin-15-CD1 isoform 6 [Mus musculus]
          Length = 1867

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1016 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1076 KFYIGGVSEDARMFASVLR-------VKATDRDT 1102



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 758 EENLPAG------TSF-LQIEAKDVD 776



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 795 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 854

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 855 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 883


>gi|218505724|ref|NP_001136210.1| protocadherin-15 isoform CD1-8 precursor [Mus musculus]
          Length = 1896

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 303 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 362

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 363 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 397



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1050 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1110 KFYIGGVSEDARMFASVLR-------VKATDRDT 1136



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 481



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 792 EENLPAG------TSF-LQIEAKDVD 810



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 829 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 888

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 889 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 917


>gi|148699993|gb|EDL31940.1| protocadherin 15 [Mus musculus]
          Length = 1849

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 251 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 310

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 311 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 345



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 998  GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1057

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1058 KFYIGGVSEDARMFASVLR-------VKATDRDT 1084



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 378 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 429



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 680 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 739

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 740 EENLPAG------TSF-LQIEAKDVD 758



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 777 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 836

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 837 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 865


>gi|54013440|dbj|BAD60809.1| protocadherin2-gamma-v5-sCP2 [Danio rerio]
          Length = 832

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE+   Y L++ A +  G    C +++ + D NDN P    ++++  ++E +P+G  V
Sbjct: 318 LDYESQNSYQLNINARDKGGLSDTCKIVIDVTDENDNPPTIQLMSFSNTIAENSPVGTTV 377

Query: 88  LTNTSLPLVIRAEDKDSETNALLDGSTN 115
                   VI  ED DS  N L+  S N
Sbjct: 378 -------AVINVEDADSGKNGLVHFSIN 398



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E    YN+++  ++  G+ A  S   + V I D NDN P F    Y  
Sbjct: 412 YYSLITDDMLDRETVTEYNITILVSDQ-GSPARHSNKTLNVKISDVNDNPPKFGSDEYKT 470

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E    G  +LT       ++A D D   NA L
Sbjct: 471 FVNENNSPGVTILT-------VKANDADWGPNAQL 498


>gi|218505722|ref|NP_001136209.1| protocadherin-15 isoform CD1-6 precursor [Mus musculus]
          Length = 1867

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1016 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1076 KFYIGGVSEDARMFASVLR-------VKATDRDT 1102



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 758 EENLPAG------TSF-LQIEAKDVD 776



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 795 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 854

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 855 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 883


>gi|85725293|gb|ABC79264.1| protocadherin-15-CD1 isoform 8 [Mus musculus]
          Length = 1896

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 303 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 362

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 363 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 397



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1050 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1110 KFYIGGVSEDARMFASVLR-------VKATDRDT 1136



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 481



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 792 EENLPAG------TSF-LQIEAKDVD 810



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 829 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 888

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 889 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 917


>gi|12483917|gb|AAG53891.1|AF281899_1 protocadherin [Mus musculus]
          Length = 1943

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDRDT 1178



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 834 EENLPAG------TSF-LQIEAKDVD 852



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|341941234|sp|Q99PJ1.2|PCD15_MOUSE RecName: Full=Protocadherin-15; Flags: Precursor
          Length = 1943

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDRDT 1178



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 834 EENLPAG------TSF-LQIEAKDVD 852



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|297301372|ref|XP_002805774.1| PREDICTED: protocadherin-15 isoform 5 [Macaca mulatta]
          Length = 1680

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 523



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1092 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1178



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTVTLAIKVLDIDDNSPVFTNSTYTVLV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 834 EENLPAGTTILQ-------IEAKDVD 852



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|218505729|ref|NP_001136212.1| protocadherin-15 isoform CD1-7 precursor [Mus musculus]
          Length = 1933

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 829 EENLPAG------TSF-LQIEAKDVD 847



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|111074522|ref|NP_075604.2| protocadherin-15 isoform CD1-1 precursor [Mus musculus]
 gi|225000578|gb|AAI72646.1| Protocadherin 15 [synthetic construct]
          Length = 1943

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDRDT 1178



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 834 EENLPAG------TSF-LQIEAKDVD 852



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|85725282|gb|ABC79259.1| protocadherin-15-CD1 isoform 2 [Mus musculus]
          Length = 1938

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 829 EENLPAG------TSF-LQIEAKDVD 847



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|218505717|ref|NP_001136208.1| protocadherin-15 isoform CD1-4 precursor [Mus musculus]
          Length = 1936

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 829 EENLPAG------TSF-LQIEAKDVD 847



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|218505715|ref|NP_001136207.1| protocadherin-15 isoform CD1-2 precursor [Mus musculus]
          Length = 1938

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 829 EENLPAG------TSF-LQIEAKDVD 847



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|297301368|ref|XP_002805772.1| PREDICTED: protocadherin-15 isoform 3 [Macaca mulatta]
          Length = 1788

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 439



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 530



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1099 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1159 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1185



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTVTLAIKVLDIDDNSPVFTNSTYTVLV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 841 EENLPAGTTILQ-------IEAKDVDLGAN 863



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 878 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 938 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 966


>gi|85725297|gb|ABC79266.1| protocadherin-15-CD1 isoform 7 [Mus musculus]
          Length = 1933

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 829 EENLPAG------TSF-LQIEAKDVD 847



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|85725295|gb|ABC79265.1| protocadherin-15-CD1 isoform 9 [Mus musculus]
          Length = 1916

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 412



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDRDT 1151



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 807 EENLPAG------TSF-LQIEAKDVD 825



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|297301370|ref|XP_002805773.1| PREDICTED: protocadherin-15 isoform 4 [Macaca mulatta]
          Length = 1675

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYIPESAPVGATIADSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTVTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 829 EENLPAGTTILQ-------IEAKDVDLGAN 851



 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|449475300|ref|XP_004175474.1| PREDICTED: uncharacterized protein LOC100229528 [Taeniopygia guttata]
          Length = 1696

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G +  KKPLDYE  + Y + V AT+  G    C V V + D NDN P     + T
Sbjct: 1174 INPETGQIHLKKPLDYEEKKTYEIDVQATDGGGLSTHCKVEVQVKDVNDNAPEVIITSLT 1233

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +SEAAP   +V        +    D+DS  N 
Sbjct: 1234 STLSEAAPPNTVV-------ALFNVRDRDSGDNG 1260



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+T + LD E    YN++V A +       A  ++ V +LD NDN P FTQ  YT  +SE
Sbjct: 1284 LVTSETLDREQVEEYNVTVRARDEGSPALSASKTLFVRLLDVNDNAPTFTQAIYTMVISE 1343

Query: 80   AAPIG 84
              P G
Sbjct: 1344 NEPAG 1348



 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L T   LD E T  YN+++TA +  G K + S   + V I D NDN P FTQ  YT 
Sbjct: 401 YYELRTNAALDRERTAEYNITITAMDW-GRKRLSSQETIFVKISDVNDNPPEFTQEVYTM 459

Query: 76  YVSE 79
            V E
Sbjct: 460 SVPE 463



 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT 65
           QLF      L+   G +     LD+E  + + + V AT+       C V V +LD NDN 
Sbjct: 290 QLFQ-----LNATTGEIRVAGKLDFEEAKSHKMVVKATDGGELSGHCKVQVEVLDVNDNA 344

Query: 66  PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
           P     + +  + E AP   +V        +    D+DS  N   + S +
Sbjct: 345 PEIALTSLSASIPEDAPPRTVV-------ALFSVRDRDSGDNGRTECSID 387



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E     NL +TAT+           V + ++D NDN P F +  Y   
Sbjct: 191 YLELVLQRQLDREEQAELNLLLTATDGGSPPRSGTAQVRIVVVDANDNIPVFERETYEVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++E +P+  LV+        + A D D  +N 
Sbjct: 251 LAENSPLEQLVVR-------VAAADPDEGSNG 275


>gi|218505727|ref|NP_001136211.1| protocadherin-15 isoform CD1-9 precursor [Mus musculus]
          Length = 1916

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 412



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDRDT 1151



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 807 EENLPAG------TSF-LQIEAKDVD 825



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|449511153|ref|XP_004175675.1| PREDICTED: neural-cadherin-like, partial [Taeniopygia guttata]
          Length = 127

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  LKP        LL  +PLD+E T+ + L+V A N+A     +  +V V+I D 
Sbjct: 28  PVRFY--LKPNRADGSASLLVAEPLDFETTKFFTLTVRAQNVAMTPLASFATVCVNITDV 85

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           NDN P+F   NY   V E A +G  V+  +++ L
Sbjct: 86  NDNVPFFMSSNYEVSVPEGADVGTSVVQVSAMDL 119


>gi|85725287|gb|ABC79261.1| protocadherin-15-CD1 isoform 4 [Mus musculus]
          Length = 1936

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 829 EENLPAG------TSF-LQIEAKDVD 847



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|85725299|gb|ABC79267.1| protocadherin-15-CD1 isoform 10 [Mus musculus]
          Length = 1913

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 412



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDRDT 1151



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 807 EENLPAG------TSF-LQIEAKDVD 825



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|47227546|emb|CAG04694.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2413

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  R Y L+  A +  G  +   V  ++LD NDN P F    Y+
Sbjct: 1959 LNPVTGVFNVTRVLDYELQRYYILTARAQDGGGQASTVRVYFNVLDVNDNPPVFETTTYS 2018

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSE+ P G+ V+T       + A D D   NA L
Sbjct: 2019 ASVSESLPAGSSVVT-------VVASDADDGPNAQL 2047



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LDYE   +Y L+V+A +        S  VI+H+ D NDN P FT  
Sbjct: 1340 SISPNTGSIFLVKKLDYETQSVYKLNVSAKDNGRPSRSSSIPVIIHVRDFNDNPPIFTPG 1399

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +    + E  P+   V       ++I A D D++ N  L+
Sbjct: 1400 DIFKSIPENLPVATSV-------MMIVAHDTDADINGQLE 1432



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILD 60
            +P  LF I     H  +G++    PL+  A+  Y + V A +M   K   S+  IV + D
Sbjct: 911  NPRGLFHI-----HEKHGLITLTGPLEVTASS-YEVEVIAEDMGVPKHTSSLVLIVSVYD 964

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   + E+ P+ +           + A DKDS  N 
Sbjct: 965  VNDNSPVFDQLSYEVLIPESEPVNSRFFK-------VEATDKDSGFNG 1005



 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTG 75
            P G L  K  LD E    YNL + A + A      SV V ++  D NDN P F   NY  
Sbjct: 1024 PDGQLYIKAELDREIQERYNLVLVARDRAVEPLSASVNVSVILDDVNDNRPLFNSTNYVF 1083

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            +  E    G+LV         + AEDKD
Sbjct: 1084 HFEEEQQRGSLVGR-------VFAEDKD 1104



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L T+K LD E    YNL +T  ++A        +   V V +LD ND  P FT    T
Sbjct: 2066 GNLRTQKALDRETQSFYNLVITVNDLAPPPMTRFTSTAQVSVILLDVNDCPPTFTSQKMT 2125

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  P+  +V       L + A D DS  N+ ++
Sbjct: 2126 -YIQENTPVDTVV-------LAVHASDSDSGPNSYVE 2154



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 11/84 (13%)

Query: 28   LDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LDYE T  Y+L + A +  GA+   + C + + +LD NDN+P F + + +  V E   IG
Sbjct: 1249 LDYETTSSYSLKIIAVD-GGAEPLSSSCMLSISVLDENDNSPSFPKSSVSVDVLENMRIG 1307

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
             LV +       + A D DS  NA
Sbjct: 1308 ELVAS-------VTATDTDSGPNA 1324



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G ++ K+ LDYE+ R Y+L++ A +  +          + +LD NDN P     Y
Sbjct: 282 IDPKTGTIIIKEGLDYESRREYSLTIHAVDNGVPSLSGRAEATIKLLDVNDNDPVVKFRY 341

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 342 FPTTSKFASVDENAQVGTVV 361



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYT 74
           G + T  PLD E    Y L VTA + +G ++    IV   +LD  DN P F+Q  Y+
Sbjct: 720 GKISTLVPLDREEKTTYQLQVTAADGSGLRSHTPAIVTVSVLDTQDNPPVFSQKGYS 776



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 49   KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            K    V V+I D NDN P FT+  Y   VSE+AP       N +  L + A D D   N 
Sbjct: 1167 KDQAKVQVYIQDINDNQPKFTKDVYQASVSESAP-------NVTQLLRVSASDVDENKNG 1219

Query: 109  LL 110
            L+
Sbjct: 1220 LV 1221



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y L V  T+      ++   V V + D NDN P F  L 
Sbjct: 611 LDPLSGRLSTAVELDREEQASYLLHVQVTDGGSPPLRSAGKVNVTLRDVNDNRPVFYPLQ 670

Query: 73  YTGYVSEAAPIGALVLT 89
           Y   V E  P G+ V T
Sbjct: 671 YFANVKENEPSGSYVTT 687



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLN 72
            GVL T + +D E + ++ L+V AT+ A        A+ +V + + D+NDN P F   N
Sbjct: 1452 GVLYTNQEVDREFSNLFELTVKATDQAVPLETRRFALKNVTIWVTDQNDNIPTFLSQN 1509



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 28  LDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           LD E    YNL+V+ ++        +  S+++ + D ND+ P F +  Y   +SE  P G
Sbjct: 410 LDRERISSYNLTVSVSDNGKPVARSSFASLVIFVNDINDHPPIFQETEYRVDISEDIPKG 469

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
           + +         + A D DS  NA L
Sbjct: 470 SYIKG-------VSATDGDSGQNANL 488



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATR--IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++ +   LD EAT   + N+S     +    +   +I++I D ND  P FTQ  +   +
Sbjct: 508 GLVTSAALLDREATSEVVLNISAKDQGLQPRISYTKLIINITDVNDQVPTFTQSTFHVSL 567

Query: 78  SEAAPIGALVL 88
           +E AP G  +L
Sbjct: 568 AEHAPAGTQLL 578


>gi|354485674|ref|XP_003505008.1| PREDICTED: protocadherin-15 isoform 1 [Cricetulus griseus]
          Length = 1931

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVD 847



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|218505731|ref|NP_001136213.1| protocadherin-15 isoform CD1-10 precursor [Mus musculus]
          Length = 1913

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 412



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDRDT 1151



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 807 EENLPAG------TSF-LQIEAKDVD 825



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|345450784|gb|AEN93982.1| cadherin 1 [Oscarella sp. SN-2011]
          Length = 2330

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++T+  LD E  ++Y  +V A + AG +    +I+++ D ND  P F++ +Y GYV E
Sbjct: 581 GRVVTRGILDRERHKLYEYAVVAEDAAGNQGQTLLIINVKDANDRKPIFSENSYIGYVKE 640

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +PIG  V   T       A D D   N+LL
Sbjct: 641 NSPIGTPVARFT-------ANDDDEGNNSLL 664



 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAV-----CSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           +PLDYE    YNL+V A +  G + V       V V + D NDN P F    Y   V E 
Sbjct: 895 RPLDYETRNQYNLTVRAID--GGRRVQLTGTARVSVTVTDVNDNAPSFETTIYATKVVEN 952

Query: 81  APIGALVLTNTSLPLVIRAEDKDS 104
           +P    ++        +RA D D+
Sbjct: 953 SPPAGFLIE-------VRASDPDT 969



 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G + T    + EA   Y +++ A +  GA ++ S   V V + D NDN+PY         
Sbjct: 683 GWISTASVFNREAVSEYRITIRAAD-GGAVSLSSETNVSVVVEDVNDNSPYLESSFVESR 741

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           V E AP+G  VL+       + A D D + NAL+D
Sbjct: 742 VYEDAPVGWRVLS-------LSARDGDVDANALVD 769



 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 17  PPYGVLLTKKPLDYE-ATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLN 72
           P  G + T+   D E  T  Y  +V      G +++     V + I D NDN P+F++  
Sbjct: 370 PNTGRISTRTVFDRENLTSQYFYAVVEARDGGKRSLSRDALVRIQIADVNDNPPFFSKPT 429

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
           Y+  + E       VL    LPL +R +D DS+
Sbjct: 430 YSVSLRED------VLLGEKLPLNLRVDDADSD 456


>gi|126290970|ref|XP_001377719.1| PREDICTED: protocadherin gamma-A2-like [Monodelphis domestica]
          Length = 816

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E    YN++VTA +           +++H+ D NDN P F+Q  Y+ Y
Sbjct: 401 YHSLVTDRALDREQVSEYNITVTAVDFGSPPLSTDTHILLHVTDINDNPPTFSQSAYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + + T       A+D DS+ NAL+
Sbjct: 461 IQENNPRGASIYSLT-------AQDPDSQENALV 487



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G LLT + LDYE  R Y +   A +  G      + V ++D NDN P  T  + T
Sbjct: 294 LNSETGELLTLQNLDYEDERFYMMEAEAQDGLGLWGRAKIHVTVVDVNDNAPEVTITSVT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E AP G ++        +    D+DS  N 
Sbjct: 354 SSIPENAPPGTII-------TLFHVHDRDSGKNG 380



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+  + LD E      + ++A +  G + + S    + V ILD NDN P FTQ  Y+
Sbjct: 191 YPELVLDRALDREKEPTLQIVLSAWD--GGEPIRSGTARIRVTILDVNDNAPVFTQPIYS 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  P G ++LT       + A D D   N+
Sbjct: 249 MNVPENVPQGTVLLT-------VNATDADEGINS 275


>gi|85725313|gb|ABC79274.1| protocadherin-15-CD2 isoform 7 [Mus musculus]
          Length = 719

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 36.2 bits (82), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171


>gi|354485686|ref|XP_003505014.1| PREDICTED: protocadherin-15 isoform 7 [Cricetulus griseus]
          Length = 1926

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVD 847



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|354485688|ref|XP_003505015.1| PREDICTED: protocadherin-15 isoform 8 [Cricetulus griseus]
          Length = 1906

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 412



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 496



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 807 EENLPAGTTFLQ-------IEAKDVD 825



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|354485680|ref|XP_003505011.1| PREDICTED: protocadherin-15 isoform 4 [Cricetulus griseus]
          Length = 1929

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVD 847



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|354485676|ref|XP_003505009.1| PREDICTED: protocadherin-15 isoform 2 [Cricetulus griseus]
          Length = 1909

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 412



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 496



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 807 EENLPAGTTFLQ-------IEAKDVD 825



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|85725284|gb|ABC79260.1| protocadherin-15-CD1 isoform 3 [Mus musculus]
 gi|85725289|gb|ABC79262.1| protocadherin-15-CD1 isoform 5 [Mus musculus]
          Length = 684

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 38.1 bits (87), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171


>gi|354485684|ref|XP_003505013.1| PREDICTED: protocadherin-15 isoform 6 [Cricetulus griseus]
          Length = 1889

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 303 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 362

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 363 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 397



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1050 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1110 KFYIGGVSEDARMFASVLR-------VKATDKDT 1136



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 481



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 792 EENLPAGTTFLQ-------IEAKDVD 810



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 829 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 888

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 889 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 917


>gi|85725319|gb|ABC79277.1| protocadherin-15-CD3 isoform 2 [Mus musculus]
          Length = 1677

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 829 EENLPAG------TSF-LQIEAKDVDLGAN 851



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|377833047|ref|XP_003689295.1| PREDICTED: protocadherin-15-like [Mus musculus]
          Length = 1696

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 251 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 310

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 311 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 345



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1005 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1064

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1065 KFYIGGVSEDARMFASVLR-------VKATDRDT 1091



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 385 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 436



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 687 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 746

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 747 EENLPAG------TSF-LQIEAKDVDLGAN 769



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 784 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 843

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 844 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 872


>gi|354485682|ref|XP_003505012.1| PREDICTED: protocadherin-15 isoform 5 [Cricetulus griseus]
          Length = 1860

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1016 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1076 KFYIGGVSEDARMFASVLR-------VKATDKDT 1102



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 758 EENLPAGTTFLQ-------IEAKDVD 776



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 795 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 854

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 855 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 883


>gi|344246426|gb|EGW02530.1| Protocadherin-15 [Cricetulus griseus]
          Length = 1827

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 288 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 347

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 348 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 382



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 988  GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1047

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1048 KFYIGGVSEDARMFASVLR-------VKATDKDT 1074



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 415 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 466



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 10/98 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 814 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 873

Query: 68  FTQLNYTGYVS----EAAPIGALVLTNTSLPLVIRAED 101
           F++  Y G V+    +  PI  +   +   PLV+ A D
Sbjct: 874 FSKRIYKGMVAPDAVKGTPITTVYAEDADPPLVVVAFD 911



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 71  KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 119



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 717 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 776

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 777 EENLPAGTTFLQ-------IEAKDVD 795


>gi|156398552|ref|XP_001638252.1| predicted protein [Nematostella vectensis]
 gi|156225371|gb|EDO46189.1| predicted protein [Nematostella vectensis]
          Length = 1852

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 8/90 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++   GV++T  PLD+E    Y L VTAT+ +   A  +V + +++ ND TP FTQ NYT
Sbjct: 1462 INSTSGVIMTTTPLDFEEKSQYGLEVTATD-SKYTAKTNVTIRVINLNDITPAFTQQNYT 1520

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              V E +P      T+TS+ + + A D+DS
Sbjct: 1521 ASVRENSP------TSTSV-VKVSASDRDS 1543



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G++ TK+PLD E    Y+L VTA +       AV ++ + I D NDN+P F+
Sbjct: 1145 KFEVNPATGLVTTKRPLDREDQASYSLRVTAMDHGKPSQSAVAAITLTINDLNDNSPQFS 1204

Query: 70   QLNYTGYVSEAAPIGALVL 88
            Q  YT  V+E    G+ +L
Sbjct: 1205 QSKYTLTVTENTANGSNIL 1223



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ TK   D E    Y +++ A +          +V + ILD NDN P F+   YT  V
Sbjct: 221 GVIRTKGAFDRETKASYQVALRAQDGGSPSRSGQATVEIEILDVNDNRPVFSSAQYTASV 280

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   IGA ++T       + A DKD+  NA L
Sbjct: 281 DEDVAIGAAMVT-------VTASDKDNGNNADL 306



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
           L P  G+L  +  LD E    Y L V A++    +   +  +H+  LD NDN P F +  
Sbjct: 839 LDPRSGILSVRSTLDRETIPSYTLVVKASDAGSPQQSITASIHVSVLDVNDNAPRFEKSL 898

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++G + E A + + VL        ++ EDKD  +N  +
Sbjct: 899 FSGEIREDASVHSTVLQ-------VKVEDKDEGSNGAI 929



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + TK PLD E   +Y L +   +       +V  VI+ ++D +DN P F    Y   +
Sbjct: 1774 GDISTKVPLDREQQAVYTLRIGVADKGNPSLSSVADVIIDVIDEDDNCPRFQPTEYNVTI 1833

Query: 78   SEAAPIGALVL 88
            SE+ P GA ++
Sbjct: 1834 SESLPRGASIV 1844



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYF 68
           G +L+K PLDYE T  Y L+VTA +       A   V + I++ NDN P F
Sbjct: 947 GFVLSKTPLDYETTAAYQLTVTARDGGSPSKSATAQVKITIINVNDNVPSF 997



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E T  Y L V AT     G     +  + +LD NDN P F   +Y   +
Sbjct: 1049 GLISVAKRLDRETTANYTLVVRATETGSQGESVYNNATIRVLDVNDNAPVFNPGSYAKSL 1108

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  PIG  V         + A D+D   NA
Sbjct: 1109 HENLPIGQTVAK-------VTATDRDEGENA 1132



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPYFT 69
            A++   GVL  KK ++ E    Y L++ A++    M  +    +V+V+  D NDN P F 
Sbjct: 1356 AINAMNGVLTVKKEINRETVPTYTLTIRASDRGSPMMTSDKELTVVVN--DVNDNPPVFN 1413

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +Y G V E +     VLT       + A+D D   NA+L
Sbjct: 1414 SQSYIGSVRENSAQSTSVLT-------VAADDSDVGANAVL 1447



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 7   LFAILKP------ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHI 58
           +F I+K        +    G++   K  DYE    Y+L+V A +           V + I
Sbjct: 409 VFGIIKGNDDGVFTIDGSTGIISIAKSPDYENKTRYDLTVQARDRGVPVKYDTAQVTIFI 468

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            D ND++P F+  NY+  + E+  IG+ V+T T+  L
Sbjct: 469 EDVNDHSPVFSPSNYSKQIPESTVIGSTVVTVTATDL 505



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           +  T +  D E+   Y L+V A + A    K    V++ + D NDN P F   +Y   + 
Sbjct: 21  ITTTGRKFDRESESRYRLTVLAQDAANRCHKGRTVVVIDVKDENDNAPEFPLNSYVFNIR 80

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P   +         ++ A D+DS TNA +
Sbjct: 81  ENTPAAQVA--------IVTATDRDSGTNAAI 104



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+   + LD+E    Y L ++ T+           +++++ D NDN P F+   Y   V
Sbjct: 326 GVVTVSRSLDFEQRSSYALGLSVTDRGSPPLTDTSHLLINVNDINDNPPVFSPSAYQSRV 385

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P G  V           A D+DS TN  L
Sbjct: 386 KENTPAGTQV----------SATDRDSSTNGAL 408



 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 9/73 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFT---QLNYT 74
           G + T+ PLD E    Y+L++ A + +  +  A  +V + I D NDN P FT   + N  
Sbjct: 740 GEITTRVPLDRETIASYSLTINADDGSLVRFMAATTVNISIADENDNQPTFTGPSRFN-- 797

Query: 75  GYVSEAAPIGALV 87
             +SE +P G  V
Sbjct: 798 --ISEDSPTGTRV 808



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY-VSEAAPIG 84
            +D EA   YNL+++A +      V +  V I   D NDN+P F   N T Y + E   IG
Sbjct: 1266 VDREALASYNLTISAKDSGVPPWVSTAFVAITVADENDNSPIFAS-NETSYGIDEGVSIG 1324

Query: 85   ALVLTNTSLPLVIRAEDKDSETNALL 110
            + V        V+ A D+D  +NA +
Sbjct: 1325 SRV-------AVVTATDRDEGSNAQV 1343



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K  ++   G + T  PLD+E    Y + ++A    G       ++ + D NDN P+F   
Sbjct: 114 KFMMNSKTGEIRTVTPLDHETKDSYTMRISA--FDGKHTTFVPLITVDDVNDNAPFFALS 171

Query: 72  NYTGYVSEAAPIGALVLTNTSLPL 95
            Y   V E   +G++V   T++ L
Sbjct: 172 VYKTGVYEDVAVGSIVRQLTAVDL 195


>gi|85725315|gb|ABC79275.1| protocadherin-15-CD2 isoform 8 [Mus musculus]
          Length = 981

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171


>gi|85725301|gb|ABC79268.1| protocadherin-15-CD2 isoform 1 [Mus musculus]
          Length = 1790

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1099 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1159 KFYIGGVSEDARMFASVLR-------VKATDRDT 1185



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 530



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 841 EENLPAG------TSF-LQIEAKDVDLGAN 863



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 878 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 938 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 966


>gi|218505733|ref|NP_001136214.1| protocadherin-15 isoform CD2-1 precursor [Mus musculus]
          Length = 1790

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1099 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1159 KFYIGGVSEDARMFASVLR-------VKATDRDT 1185



 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 530



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 841 EENLPAG------TSF-LQIEAKDVDLGAN 863



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 878 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 938 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 966


>gi|85725317|gb|ABC79276.1| protocadherin-15-CD3 isoform 1 [Mus musculus]
          Length = 1682

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDRDT 1178



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 834 EENLPAG------TSF-LQIEAKDVDLGAN 856



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|18087793|ref|NP_444370.1| protocadherin beta 15 [Mus musculus]
 gi|13876290|gb|AAK26065.1| protocadherin beta 15 [Mus musculus]
 gi|26332739|dbj|BAC30087.1| unnamed protein product [Mus musculus]
 gi|148678209|gb|EDL10156.1| protocadherin beta 15 [Mus musculus]
          Length = 786

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP++   Y  L+T+KPLD E+   YN+++T T+M   +     ++ V + D NDN P 
Sbjct: 392 VLKPSVENFY-TLVTEKPLDRESNTEYNITITVTDMGIPRLTTQHTITVQVSDINDNAPT 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 451 FTQTSYTMFVRENNSPALHIG-----------TISATDSDSGSNA 484



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           G L  K+ L+YEA + Y++++ A +  G    C+V+V ++D NDN P F
Sbjct: 299 GELYLKRELNYEAIQTYSITIQARDGGGLSGKCAVVVEVMDVNDNPPEF 347



 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V A +  G+ A+ S   V V ILD NDN P+         
Sbjct: 511 GQLFALRALDYEALQAFEFHVGAIDQ-GSPALSSQALVRVVILDDNDNAPFVLYPMQNAS 569

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 570 APYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 602



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L++TA +        + +V IL  D NDN+P F Q  Y     E
Sbjct: 194 LVLDKMLDREEIPEFTLTLTALDGGSPPRSGTALVQILVLDINDNSPQFVQSLYKVQSPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             P+G+LV       + + A D D+ +   +D
Sbjct: 254 NTPVGSLV-------VAVSARDLDTGSYGQID 278


>gi|85725327|gb|ABC79281.1| protocadherin-15-secreted isoform 3 [Mus musculus]
          Length = 650

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171


>gi|347543897|gb|AEP02521.1| PCDH15, partial [Chaerephon plicatus]
          Length = 1918

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 333 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 392

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 393 YQGYILESAPVGATISDSVNLTSPLRIVALDKDIE 427



 Score = 41.2 bits (95), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1080 GVIYVNGPLDYETRTSYILRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1139

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + + VL        ++A DKD+
Sbjct: 1140 KFYIGGVSEDARMFSSVLR-------VKATDKDT 1166



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E    Y  S+TA +        +V + ++D NDNTP F +++Y  YV
Sbjct: 460 QPVDREEQDTYTFSITAFDGVQESKPVTVNIRVMDANDNTPTFPEISYNVYV 511



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   LD E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 762 GSIYTTVKLDREVRDYYELLVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 821

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G      TS  L I A+D D
Sbjct: 822 EENLPAG------TSF-LQIEAKDVD 840



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 116 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 164



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  GVL   + LDYE+      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 859 ALHPFTGVLSLLRSLDYESFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 918

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + TN      + AED D
Sbjct: 919 FSKRIYKGIVAPDAEKGTPI-TN------VYAEDAD 947



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 570 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 629


>gi|119514233|gb|ABL75896.1| protocadherin 2G21 [Takifugu rubripes]
          Length = 952

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +    P+DYE  R Y + V A +  G      +I+ ++D NDN P    ++++  VSE
Sbjct: 301 GAITVSGPIDYEKDRKYEVRVEAKDQGGLIGTSKIIIDVIDLNDNPPVINVMSFSSTVSE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            AP G  +        V   +D DS+ N L+  S
Sbjct: 361 DAPPGTTI-------AVFNVKDADSDKNGLIKCS 387



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L++ +  D E+   YN++VTAT+        S  +H++  D NDN P F + +Y+ Y+ E
Sbjct: 406 LISDQFFDRESVSKYNITVTATDSGTPPLSTSTTLHLIISDVNDNAPLFEKQSYSAYIVE 465

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               G  + T         A D D   NA +
Sbjct: 466 NNSPGTSIFT-------FSARDSDWNQNARI 489



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 10  ILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDN 64
           ILK   +P    Y  ++ +KPLD E      L + A +    +   +V + I  LD NDN
Sbjct: 181 ILKQHANPDGSKYAEMVLQKPLDRERHPHLTLKLIAVDGGTPQRSGTVNIDITVLDANDN 240

Query: 65  TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P F Q  Y   + E   IG  V+T       + A D DS  N L+
Sbjct: 241 APVFNQSVYKASIMENTKIGTNVVT-------VNATDADSGINGLI 279


>gi|354485678|ref|XP_003505010.1| PREDICTED: protocadherin-15 isoform 3 [Cricetulus griseus]
          Length = 1672

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAQLTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|405778352|ref|NP_001258306.1| protocadherin-15 precursor [Rattus norvegicus]
          Length = 1791

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1099 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A D+D+
Sbjct: 1159 KFYIGGVSEDARMFTSVLR-------VKATDRDT 1185



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYNVYV 530



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 841 EENLPAGTAFLQ-------IEAKDVDLGAN 863



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFT 173



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 878 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 938 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 966


>gi|291232409|ref|XP_002736151.1| PREDICTED: FAT tumor suppressor homolog 1-like [Saccoglossus
           kowalevskii]
          Length = 2630

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 9/104 (8%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTP 66
           A L   + P  G++ T +  D E  RIY +SV AT++A      +C + + I D NDNTP
Sbjct: 591 ADLNFRIDPNLGIITTARRFDREVKRIYGISVAATDLAPDPLIGICQMNIEITDVNDNTP 650

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +F Q +Y   + E   +G      TS  L + A+D D+  NA +
Sbjct: 651 HFEQRSYEYQLREDTQVG------TSF-LRVAAQDADTGYNAEI 687



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            LD E   +YN+ V AT+  G     +  + + D NDN P FT+  Y    SE+  +GA V
Sbjct: 1265 LDREDVPVYNIVVEATDGGGLTGSATATIELEDINDNAPEFTEDKYYRAASESLLVGASV 1324

Query: 88   LTNTSLPLVIRAEDKDSETNALLD 111
            LT T+L       D D   NA LD
Sbjct: 1325 LTVTAL-------DMDVGVNAQLD 1341



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L     LDYE T  + L + + N A     +  +V ++++D NDN P F+  NY   V
Sbjct: 817 GELKVFHRLDYETTPSFELRIRSLNAAQVPLPSYATVEINLIDVNDNVPLFSLPNYGASV 876

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E +  G  V         + AED D+ +NA +
Sbjct: 877 PEMSIQGTFVFQ-------VTAEDADTGSNAEI 902



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+   K LD E    + L   A +  GA       +++ + D NDN P F    
Sbjct: 1140 IDPHSGVIHATKALDREDQAQWILQAVAADEDGAGLDGFADIVISLRDINDNAPTFPNGP 1199

Query: 73   YTGYVSEAAPIGALVLTNTSLPL 95
            Y G V E +  G  V+T  ++ L
Sbjct: 1200 YMGTVPEHSLAGTYVMTMAAVDL 1222



 Score = 34.3 bits (77), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 28  LDYEATR-IYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           LDYE+T  +Y +  TA +          ++ V I + ND  P F+Q  Y  +V+E AP G
Sbjct: 395 LDYESTNSLYTIIATAKDHGSPSKTGTATINVRIKNYNDEPPRFSQNTYKYFVAENAPDG 454

Query: 85  ALVLT 89
             V T
Sbjct: 455 FQVAT 459


>gi|218505773|ref|NP_001136232.1| protocadherin-15 isoform CD3-2 precursor [Mus musculus]
          Length = 1677

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 41.6 bits (96), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 37.7 bits (86), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 829 EENLPAG------TSF-LQIEAKDVDLGAN 851



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|432104084|gb|ELK30914.1| Protocadherin Fat 4 [Myotis davidii]
          Length = 1859

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A++   GVL   K LDYE  + + ++++AT+         CSV V++LD NDN+P F   
Sbjct: 19  AINSSTGVLTLAKALDYELCQKHEMTISATDGGWVARTGSCSVTVNVLDVNDNSPVFLPE 78

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   V E AP G  V+        + A D DS TNA++
Sbjct: 79  EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 110



 Score = 40.4 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           + P  GVL T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 124 IDPNTGVLTTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 183

Query: 73  YTGYVSEAAPIGALV 87
           Y   +SEAAP G +V
Sbjct: 184 YYFEISEAAPRGTIV 198


>gi|156365971|ref|XP_001626915.1| predicted protein [Nematostella vectensis]
 gi|156213808|gb|EDO34815.1| predicted protein [Nematostella vectensis]
          Length = 850

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           +G +     LD E    YNL++TAT+        A+   +V ILDRNDN P F+   YTG
Sbjct: 171 HGTIEVAGNLDREVNDFYNLTITATDGGVPISRTAIAIALVRILDRNDNVPKFSHARYTG 230

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E +  G  V   +S    I A D+D E+NA
Sbjct: 231 SIQENSGPGVPVQMASS----IMATDRDIESNA 259



 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 11  LKPALHPPYGVLLTK----KPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDN 64
           ++ A++P  GV+ T+      LD+E T  Y   V A + AG   +++  V++H+LD NDN
Sbjct: 271 IQFAVNPRTGVITTRVSPPPSLDHERTTNYTFHVIAADQAGTGHESLAEVVIHVLDANDN 330

Query: 65  TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           TP F   +    +SEAA IG  V         + A D DS  N  +
Sbjct: 331 TPRFIPSSIQSTISEAASIGQSVAR-------VTANDPDSGLNGRI 369



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A++   G +   +PLD E  + Y+ +V A +  G ++  +V V I D NDN+P F  + Y
Sbjct: 483 AINSNTGSVTITRPLDRETKQAYSFTVHARDGGGLESNVAVNVEIGDENDNSPQFPTVQY 542

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V +  P+G +V       L + AED+D   N 
Sbjct: 543 QTDVIDRTPVGTIV-------LAVNAEDRDVGNNG 570



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G++ T + L+ + T  YNL++ A +  +    A   V + + D NDN P F   N
Sbjct: 59  LDPNTGMIKTARNLERQQTFSYNLTIGAADHGLPSFSATTRVSIVVGDLNDNNPVFNPTN 118

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+  V E +P+G      TSL L + A D DS  NA +
Sbjct: 119 YSTTVFENSPVG------TSL-LDVTATDADSGQNAYV 149



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+     LD EA  +Y L+V+A + + +  +   +V V + D NDNTP FT+  +   V
Sbjct: 388 GVVRVSGSLDREAKAVYVLNVSAIDGSYSPREGYGTVTVTLQDVNDNTPKFTKPAFNVDV 447

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE   +G++++  T       A D D  +NA +
Sbjct: 448 SEGVAVGSVIVNAT-------ATDPDQGSNAAI 473



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 12/99 (12%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
           ++ P  G +  +K ++ EA   Y++++TA++  G   + S   V VH+LD NDN P FT 
Sbjct: 690 SIEPSTGQIRLQKAINREAKENYHVTITASDR-GTPVLSSDAKVHVHVLDVNDNPPVFTS 748

Query: 71  LNYTGYVSEA-APIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   +SE  A  G  V+        + A D D E N 
Sbjct: 749 RVYERTMSEGNAAAGEFVVQ-------VNATDADVERNG 780



 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 14/108 (12%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIY-------NLSVTATNMAGAKAVCSVIVHILDRN 62
           IL   + P  G + T   LD E   +Y       NLSVT   +    +   + + + D N
Sbjct: 578 ILPFIIVPDTGNINTSSKLDREQQSLYTLVHYVLNLSVTDHGVTQFTSFALLNISVTDFN 637

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           DN P F Q  Y+  V E  P+G  V        ++ A D+DS  N+ +
Sbjct: 638 DNQPQFNQSEYSATVLENMPVGTKV-------TMVTARDEDSGINSQI 678


>gi|426252711|ref|XP_004020046.1| PREDICTED: protocadherin-15 [Ovis aries]
          Length = 1884

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPINRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1016 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1076 KFYIGGVSEDARMFASVLR-------VKATDKDT 1102



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYAFLITAFDGVQESEPVIVTIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 758 EENLPAGTTFLQ-------IEAKDVD 776



 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYE+      S+T    A ++ G     + +V V I D ND  P 
Sbjct: 795 ALHPFTGELSLLRSLDYESFPDQEASITFLVEAFDIYGTMPPGIATVTVIIKDMNDYPPV 854

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 855 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 883


>gi|218505743|ref|NP_001136218.1| protocadherin-15 isoform CD3-1 precursor [Mus musculus]
          Length = 1682

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDRDT 1178



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 834 EENLPAG------TSF-LQIEAKDVDLGAN 856



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|218505747|ref|NP_001136220.1| protocadherin-15 isoform SI-2 precursor [Mus musculus]
 gi|85725325|gb|ABC79280.1| protocadherin-15-secreted isoform 2 [Mus musculus]
          Length = 1171

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 829 EENLPAG------TSF-LQIEAKDVDLGAN 851



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|42490953|gb|AAH66178.1| Protocadherin beta 15 [Mus musculus]
          Length = 786

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP++   Y  L+T+KPLD E+   YN+++T T+M   +     ++ V + D NDN P 
Sbjct: 392 VLKPSVENFY-TLVTEKPLDRESNTEYNITITVTDMGIPRLTTQHTITVQVSDINDNAPT 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 451 FTQTSYTMFVCENNSPALHIG-----------TISATDSDSGSNA 484



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           G L  K+ L+YEA + Y++++ A +  G    C+V+V ++D NDN P F
Sbjct: 299 GELYLKRELNYEAIQTYSITIQARDGGGLSGKCAVVVEVMDVNDNPPEF 347



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V A +  G+ A+ S   V V ILD NDN P+         
Sbjct: 511 GQLFALRALDYEALQAFEFHVGAIDQ-GSPALSSQALVRVVILDDNDNAPFVLYPMQNAS 569

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 570 APYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 602



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L++TA +        + +V IL  D NDN+P F Q  Y     E
Sbjct: 194 LVLDKMLDREEIPEFTLTLTALDGGSPPRSGTALVQILVLDINDNSPQFVQSLYKVQSPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             P+G+LV       + + A D D+ +   +D
Sbjct: 254 NTPVGSLV-------VAVSARDLDTGSYGQID 278


>gi|403260248|ref|XP_003922589.1| PREDICTED: protocadherin-15 [Saimiri boliviensis boliviensis]
          Length = 1869

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 256 MHPRTAELSLLEPVNRDFRQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 315

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 316 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 350



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 383 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 434



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N+N P F +
Sbjct: 1003 GVIYVNGPLDYETRTSYILRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNNPPVFQK 1062

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1063 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1089



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 685 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTITLAIKVLDIDDNSPVFTNSTYTVLV 744

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 745 EENLPAGTTFLQ-------IEAKDVD 763



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49 KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
          K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 15 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 63



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A++ A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 493 RTYALTVQASDNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 552

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 553 N-------LQAADREGDSVTYAIENG 571



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 782 ALHPVTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 841

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 842 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 870


>gi|14039466|gb|AAK53233.1|AF326308_1 protocadherin-betaO [Mus musculus]
          Length = 723

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP++   Y  L+T+KPLD E+   YN+++T T+M   +     ++ V + D NDN P 
Sbjct: 392 VLKPSVENFY-TLVTEKPLDRESNTEYNITITVTDMGIPRLTTQHTITVQVSDINDNAPT 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 451 FTQTSYTMFVRENNSPALHIG-----------TISATDSDSGSNA 484



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 31/49 (63%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           G L  K+ L+YEA + Y++++ A +  G    C+V+V ++D NDN P F
Sbjct: 299 GELYLKRELNYEAIQTYSITIQARDGGGLSGKCAVVVEVMDVNDNPPEF 347



 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V A +  G+ A+ S   V V ILD NDN P+         
Sbjct: 511 GQLFALRALDYEALQAFEFHVGAIDQ-GSPALSSQALVRVVILDDNDNAPFVLYPMQNAS 569

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 570 APYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 602



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L++TA +        + +V IL  D NDN+P F Q  Y     E
Sbjct: 194 LVLDKMLDREEIPEFTLTLTALDGGSPPRSGTALVQILVLDINDNSPQFVQSLYKVQSPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             P+G+LV       + + A D D+ +   +D
Sbjct: 254 NTPVGSLV-------VAVSARDLDTGSYGQID 278


>gi|449266545|gb|EMC77591.1| Neural-cadherin, partial [Columba livia]
          Length = 2420

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  L P  H     +L  +PLDYE T+ + L V A N+A     A  ++ +++ D 
Sbjct: 683 PVRFY--LTPNRHDGSASILVAEPLDYETTKSFLLRVRAQNVAAVPLAAFTTIYINLTDV 740

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVL 88
           NDN P+FT   Y   V+E A +G  V+
Sbjct: 741 NDNVPFFTSSIYEASVTEGAAVGTFVV 767



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           ++HP  GVL T +  D E  R Y ++VTAT+ A      +C + + ILD+NDN P F   
Sbjct: 479 SIHPDTGVLTTVQVFDREKQREYPITVTATDQAAEPLIGICQINIIILDQNDNDPRFENT 538

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +Y  ++ E   +G      TS  L + A D D  +NA +
Sbjct: 539 HYEYFLREDTRVG------TSF-LRVAAHDDDYSSNAAI 570



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +   +PLDYE T++Y + + A++    +    +I++++++ND TP F+   Y 
Sbjct: 912 VEPETGAIFIAQPLDYEETKMYEIHLLASD-GKWEDYAVIIINVINKNDETPVFSINEYY 970

Query: 75  GYVSE 79
           G + E
Sbjct: 971 GSIIE 975



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            A+    G + + K LD E   ++   V AT+  G        VI+++ D NDN P FT +
Sbjct: 1015 AIDEKTGSIYSHKMLDREERALWRFVVLATDEGGEGLTGFADVIINVWDINDNAPMFTCM 1074

Query: 72   --NYTGYVSEAAPIGALVL 88
              +  G V E +P G LV+
Sbjct: 1075 PDDCNGSVFENSPAGTLVM 1093



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 54  VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V V I D NDN P FTQ  Y   V E   +G+ ++T       + A D+D  TNA L
Sbjct: 848 VRVFISDVNDNKPVFTQSVYEVNVDEDQDVGSAIIT-------VTANDEDEGTNAKL 897



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
            S P++ FA+ +      YG ++    LD E    Y+L V A++          +V+V++L
Sbjct: 1336 SDPMRQFAVDQ------YGHVIVANTLDREVIPKYSLVVQASDQGTPACTGSVTVLVNLL 1389

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P F +  Y   + E   +G  V+       ++ A D DSE N 
Sbjct: 1390 DVNDNGPRF-EAPYMPVLWENV-LGPEVVNMNHTSKLLHAFDPDSEENG 1436



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 19  YGVLLTKKPLDYEA-TRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           +G +     LDYE    +Y   + A +          +V +H+ + ND  P F+Q  Y  
Sbjct: 267 HGTIFPATQLDYERPNHLYEFVIMAVDKGEEPKTGTATVRIHVSNVNDEAPEFSQKIYRS 326

Query: 76  YVSEAAPIGALVLT 89
           +VSE A    LV T
Sbjct: 327 FVSEDAGPNTLVAT 340


>gi|169402704|gb|ACA53511.1| protocadherin 15 precursor (predicted) [Callicebus moloch]
          Length = 1601

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT+ +
Sbjct: 11  MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTKPS 70

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 71  YQGYILESAPVGATISDSLNLTSPLGIVALDKDIE 105



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
           GV+    PLDYE    Y L V A ++    A            V + I D N+N P F +
Sbjct: 758 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNNPPVFQK 817

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y G VSE A +   VL        ++A DKD+
Sbjct: 818 KFYIGGVSEDARMFTSVLR-------VKATDKDT 844



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 138 QPVDREEQQTYTFLITAFDGVQESEPVIVNIQVMDANDNTPTFPEVSYDVYV 189



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A++ A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 248 RTYALTVQASDNASPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 307

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 308 N-------LQASDREGDSITYAIENG 326



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 440 GSIYTTVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 499

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 500 EENLPAGTTFLQ-------IEAKDVD 518



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 537 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 596

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 597 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 625


>gi|218505745|ref|NP_001136219.1| protocadherin-15 isoform SI-1 precursor [Mus musculus]
 gi|74226398|dbj|BAE23903.1| unnamed protein product [Mus musculus]
 gi|85725323|gb|ABC79279.1| protocadherin-15-secreted isoform 1 [Mus musculus]
          Length = 1176

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 834 EENLPAG------TSF-LQIEAKDVDLGAN 856



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|291234311|ref|XP_002737092.1| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 3-like,
           partial [Saccoglossus kowalevskii]
          Length = 1726

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 7/84 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LD E   +YN+ V AT+  G     +  + + D NDN P FT+  Y   VSEA P+GA V
Sbjct: 365 LDREKVPVYNIVVEATDGGGLTGSATATIELDDINDNAPEFTEDRYFTTVSEALPVGASV 424

Query: 88  LTNTSLPLVIRAEDKDSETNALLD 111
           LT T+L       D D   NA LD
Sbjct: 425 LTVTAL-------DMDIGVNAQLD 441



 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 16/111 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +     LD E    +     AT+  GA       VIV ++D NDN P F    YTG V
Sbjct: 245 GEIYATTALDREDQAYWFFQAVATDEGGAGLDGFADVIVSLIDINDNAPMFPNGPYTGSV 304

Query: 78  SEAAPIGALVLTNTSLPL--------------VIRAEDKDSETNALLDGST 114
            E +P G  V+T +++ L              +I   +KD E    +D  T
Sbjct: 305 LEHSPAGTTVMTMSAVDLDDPNEGDNAHCTYEIIENAEKDGEIIFAIDADT 355


>gi|218505737|ref|NP_001136215.1| protocadherin-15 isoform CD2-2 precursor [Mus musculus]
          Length = 1518

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 829 EENLPAG------TSF-LQIEAKDVDLGAN 851



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|395501475|ref|XP_003755120.1| PREDICTED: protocadherin-15 [Sarcophilus harrisii]
          Length = 1782

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 316 MHPRTAELSLLQPVNRDFYQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 375

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  N +L  PL I   DKD E
Sbjct: 376 YQGYILESAPVGATISDNLNLTTPLRIVVLDKDVE 410



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T+  L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 752 GTIYTRVKLNREVRDYYELVVIATDGAVHPRHSTLTLAIRVLDIDDNSPVFTNSTYTVVV 811

Query: 78  SEAAPIGALVL 88
            E  P GA+ L
Sbjct: 812 EENLPAGAIFL 822



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +     +  +V + ++D NDNTP F  ++Y  YV
Sbjct: 450 QPVDREEQQYYTFSITAFDGVQESSPVTVNIKVIDANDNTPTFPAISYNVYV 501



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+  K  LDYE    Y L V A ++    A            V + + D ND+ P F +
Sbjct: 1070 GVIYVKSLLDYETKTSYVLRVQADSLEVVLANLRVPSKSNSAKVYIEVQDENDHAPVFQK 1129

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + + VL        ++A DKD+
Sbjct: 1130 RLYIGGVSEEALMFSSVLR-------VKATDKDT 1156



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 99  KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 147



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEA----TRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   K LDYE+           V A ++ G     + +V V + D ND  P 
Sbjct: 849 ALHPFTGELSLLKSLDYESFPENEAYITFLVEAFDIGGTMPPGIATVTVIVKDMNDYPPV 908

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G L+ T       + AED D
Sbjct: 909 FSKRLYKGMVAPDAVKGTLITT-------VFAEDAD 937



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  VSEA  IGA++L
Sbjct: 560 RTYALTVQAADNAPPAERRDSICTVYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAVLL 619


>gi|85725303|gb|ABC79269.1| protocadherin-15-CD2 isoform 2 [Mus musculus]
          Length = 1518

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 434



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D+D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDRDT 1173



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y   +TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ EA   Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G      TS  L I A+D D   N
Sbjct: 829 EENLPAG------TSF-LQIEAKDVDLGAN 851



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLAEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|347543889|gb|AEP02517.1| PCDH15, partial [Eonycteris spelaea]
          Length = 1901

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 328 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMSS 387

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 388 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 422



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1075 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1134

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1135 KFYIGGVSEDARMFASVLR-------VKATDKDT 1161



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 455 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 506



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 111 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 159



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 757 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTITLAIKVLDIDDNSPVFTNSTYTVVV 816

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 817 EENLPAGTTFLQ-------IEAKDVD 835



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 565 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 624


>gi|110761659|ref|XP_393848.3| PREDICTED: cadherin-23-like [Apis mellifera]
          Length = 1843

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
           +++ ++ F   K A +P  G +   K LDYEA + Y+L++ A +  G  +  ++++ + D
Sbjct: 528 LTYTLRGFGADKFATNPKTGGISVSKALDYEAQKSYSLTMEAKDGGGRVSAVNILIELED 587

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            NDN P F Q  YT  V E A       T+    + +RA D D
Sbjct: 588 VNDNKPAFEQKEYTRTVREGA-------TSFDPQMFVRATDAD 623



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNM--AGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            + T   LD E   +    V A++M   GA+   +   V V +LD NDN P F Q  YT  
Sbjct: 1128 IATNTTLDREKQSVLRFYVVASDMPQGGAEQRSTRALVTVDVLDVNDNAPTFEQEAYTAV 1187

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + E AP G  V+        I A D D +   +++
Sbjct: 1188 IPENAPSGVSVVN-------ITATDPDEDKGGVIN 1215



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYN--LSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYT 74
           GV++ +K LD E+  +    +S+T   +AG++     +   + +LD NDN P +    Y 
Sbjct: 77  GVVVLRKALDRESQDLIEVIISITDEGIAGSEPNTVSLRREIAVLDENDNPPVYHGRPYA 136

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E+A +G L++     P  I   D+D   NA
Sbjct: 137 ARVPESAHVGGLLVP----PGTITITDRDGGVNA 166



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 20/115 (17%)

Query: 3    HPVQLFAILKPALHPPY-------GVLLTKKPLDYEA--TRIYNLSVTAT----NMAGAK 49
            +PVQ F +++      Y       G ++  K LDYEA   +     V A      +    
Sbjct: 984  YPVQRFELVREDDDEGYVNVGVQSGNVVLSKRLDYEALNQKFIQFKVRALARDYEITRKM 1043

Query: 50   AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +  +VIV + D NDN P F Q +Y   V E+     +VL        ++A D DS
Sbjct: 1044 SEANVIVEVQDTNDNNPVFAQKDYKISVLESEKPSKIVLN-------VKATDMDS 1091


>gi|395736290|ref|XP_003776729.1| PREDICTED: protocadherin gamma-B7 [Pongo abelii]
          Length = 808

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VI+ +LD NDN+P     + + ++ E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIIEVLDENDNSPEIIITSLSDHIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSTHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|189069366|dbj|BAG36398.1| unnamed protein product [Homo sapiens]
          Length = 795

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  ILKP L   Y  L+T++PLD E +  YN+++  T++     K   ++ V + 
Sbjct: 383 SIPDNLPFILKPTLKNFY-TLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQNITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 442 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRVRDRDSGENG 378



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|9256616|ref|NP_061761.1| protocadherin beta-4 precursor [Homo sapiens]
 gi|13431376|sp|Q9Y5E5.1|PCDB4_HUMAN RecName: Full=Protocadherin beta-4; Short=PCDH-beta-4; Flags:
           Precursor
 gi|5457043|gb|AAD43758.1|AF152497_1 protocadherin beta 4 [Homo sapiens]
 gi|14009471|gb|AAK51621.1|AF217754_1 protocadherin-beta4 [Homo sapiens]
 gi|66990079|gb|AAH98139.1| Protocadherin beta 4 [Homo sapiens]
 gi|68226683|gb|AAH98346.1| Protocadherin beta 4 [Homo sapiens]
 gi|119582384|gb|EAW61980.1| protocadherin beta 4 [Homo sapiens]
 gi|168277856|dbj|BAG10906.1| protocadherin beta 4 precursor [synthetic construct]
          Length = 795

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  ILKP L   Y  L+T++PLD E +  YN+++  T++     K   ++ V + 
Sbjct: 383 SIPDNLPFILKPTLKNFY-TLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQNITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 442 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249

Query: 77  VSEAAPI 83
           V E +P+
Sbjct: 250 VLENSPL 256


>gi|432879584|ref|XP_004073499.1| PREDICTED: uncharacterized protein LOC101171842 [Oryzias latipes]
          Length = 8377

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           +  L+ KK LD E   ++NL++TA +  G K       SVIVH+LD NDN P F +  Y 
Sbjct: 366 FADLILKKTLDREQQAVHNLTLTAVD--GGKPARSGTASVIVHVLDTNDNKPTFDKSLYN 423

Query: 75  GYVSEAAPIGALVL 88
             + E +PIG+LVL
Sbjct: 424 VKIMENSPIGSLVL 437



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            +  L+ KKPLD E   ++ L++TA +  +       S+IV +LD NDN P F +  Y   
Sbjct: 924  FADLILKKPLDREQRAVHTLTLTAVDGGVPTRTGTASIIVRVLDVNDNAPSFDKDTYVVD 983

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E +PIG+LV+        + A D D  +NA
Sbjct: 984  VMENSPIGSLVIK-------LNATDLDEGSNA 1008



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHI 58
            S P  L   LKP+       L+TK  LD E + +Y++++TA ++ G   + S   + V +
Sbjct: 1699 SVPADLPFELKPSPDGQSYALITKDYLDKETSEVYSVTITAQDL-GYPVLSSTKVIKVDV 1757

Query: 59   LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             D NDN+P F Q  YT YV+E    G  + +       + A DKD   NA
Sbjct: 1758 KDVNDNSPVFPQTPYTFYVNENNVAGMSIFS-------VSASDKDGAENA 1800



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 13/91 (14%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
            L+ +K LD E +  + L +TA +  G K V S    +IV +LD NDN+P FT+  Y+  +
Sbjct: 7755 LVLQKQLDRETSEKHKLRLTAVD--GGKPVKSGNIDIIVDVLDVNDNSPVFTKETYSATI 7812

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  PI   V+        + A D D   NA
Sbjct: 7813 RENIPIDTFVIQ-------VNATDLDKGANA 7836



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVS 78
            +LTK  LD E T  Y++++TA + AG  ++ S   + V++ D NDN P F+   YT Y++
Sbjct: 7180 VLTKSQLDREETSRYDITITAKD-AGEPSLTSEKTISVYVSDTNDNKPEFSLNPYTFYLT 7238

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E    GA V +       ++A D D   NAL+
Sbjct: 7239 ENNTPGAPVFS-------VQATDHDEGENALI 7263



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 13/91 (14%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
            L+ +K LD E    + L +TA +  G K V S    +IV +LD NDN+P FT+  Y+  +
Sbjct: 5469 LVLQKQLDRETAEKHKLRLTAVD--GGKPVKSGNIDIIVDVLDVNDNSPVFTKETYSATI 5526

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  PI   V+        + A+D D   NA
Sbjct: 5527 RENIPIDTGVIQ-------VNAKDLDKGANA 5550



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYF 68
            LKP+       L+ K+PLD E+   Y++ +TAT+          +V + + D NDN P F
Sbjct: 3157 LKPSFQENMYSLVVKQPLDRESVSHYDILITATDCGQPTLSTFKTVSIDVADVNDNKPEF 3216

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            TQ     Y++E    G ++ + ++L       DKD   NA+L
Sbjct: 3217 TQNPVELYLTENNTPGNVICSVSAL-------DKDLNENAIL 3251



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            L+P  G +  K+ ++YE  ++Y + V A++  ++     C V + I D NDN P      
Sbjct: 1028 LNPENGEIRVKEMINYEDLQLYEMEVIASDKGLSSLSGQCKVKIQITDMNDNHPEI---- 1083

Query: 73   YTGYV-SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
               Y+ S  +P+   V T+T +  V+   DKDS  N ++D
Sbjct: 1084 ---YIKSFQSPVKENVATDTVIA-VVSVSDKDSGENGIVD 1119



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +KPLD E    + L +TA +          +V V +LD NDN+P FTQ  Y+  ++E
Sbjct: 2954 LVLQKPLDREKHAEHKLILTAVDGGSPPKSGTLNVTVTVLDTNDNSPIFTQEIYSAIINE 3013

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               +G+ V+T       + A D D   NA
Sbjct: 3014 NIKVGSNVIT-------VNATDLDEGVNA 3035



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
           L+P  G +  +  L+YE   IY++ V AT+  GA ++   C++ + + D NDN P  +  
Sbjct: 470 LNPTSGEITVRGMLNYEEFNIYDMEVIATD-KGANSLSGQCTIKILVEDMNDNHPELSIK 528

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           ++   VSE   +  ++        V+   DKDS  N ++D
Sbjct: 529 SFQSPVSEDIKLDTVI-------AVVSVSDKDSGENGIVD 561



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRND 63
            Q++ I     H   G +  K  +D+E   +Y L V A++       A C VI+ +LD+ND
Sbjct: 3048 QIYEIFSINKHS--GEISVKGEIDFEKAEVYKLDVHASDKGQPPMNADCRVIIKVLDQND 3105

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P     + +  VSE +  G +V        +I   D+DS  N 
Sbjct: 3106 NLPEIEVTSLSKSVSEDSKPGTVV-------SLISITDRDSGLNG 3143



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            L+ KK LD E    Y   VTA +  G K       +V + +LD NDN P FTQ +Y   +
Sbjct: 4681 LVLKKSLDRELKHNYAFVVTAVD--GGKPARSGTLNVGIFVLDSNDNRPVFTQESYEITL 4738

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             E  P+  ++LT       + A D D  TN  ++ S
Sbjct: 4739 QENIPLNTVILT-------MNASDLDEGTNGEIEYS 4767



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
            L P++      L+TK  LD E+   Y++++ A++    +  A+ ++ V + D NDNTP F
Sbjct: 2391 LTPSIEENMFSLVTKGRLDRESVSYYDITIIASDCGKPQLSAIKTLRVQVSDVNDNTPVF 2450

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Q     Y+ E    G  V +       ++A D D   NA +
Sbjct: 2451 SQNPLEFYLEENNQPGYSVFS-------VKASDNDQNENAAI 2485



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 10/103 (9%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF 68
            LKP+       ++TK+ LD E  + Y + + AT+        + S+ + I D NDN+P F
Sbjct: 6452 LKPSYKENVYSIVTKEDLDREKEKQYTIKIKATDCGKPPLATLKSLSIQISDVNDNSPQF 6511

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD-SETNALL 110
            ++     Y++E   IGA V +       + AED D +E +A+L
Sbjct: 6512 SENPLYVYLTENNKIGANVFS-------VSAEDMDVNENSAIL 6547



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            AL+   G +     LDYE  ++Y ++V A +       + C VI+ + D NDN P     
Sbjct: 1605 ALNSKTGKVTVNGNLDYEEKQVYEINVMAADKGAVSLSSNCKVIIRVEDVNDNQPDIDIT 1664

Query: 72   NYTGYVSEAAPIGALV 87
            + +  ++E AP G +V
Sbjct: 1665 SLSSQIAEDAPPGTVV 1680



 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            L+ ++PLD E T  + L +TA +  G K     + ++ V I D NDN P   +  YT  V
Sbjct: 1505 LVLQRPLDREHTARHTLIITAID--GGKPPKSGILNITVIISDVNDNPPVCDKQKYTVTV 1562

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             E AP G  +LT       + A D D   N+ ++ S
Sbjct: 1563 KENAPTGTYLLT-------VNASDSDEGVNSEIEYS 1591



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYF 68
            LKP+       L+TK  LD E    Y++SVTAT+        S I  + + D NDN P F
Sbjct: 4098 LKPSFKENVFSLVTKNTLDRETVSHYDISVTATDCGDPPLSTSRILNIQVSDVNDNIPEF 4157

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               +   Y++E    G  + +       + A DKD   NA
Sbjct: 4158 PHNSLPLYLTENNSPGKSIFS-------VSAVDKDLNENA 4190



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYF 68
            L P+L      +++   LD E T  Y++++ A +           ++++  D NDN P F
Sbjct: 5678 LSPSLQENMFAVVSMSQLDRENTPHYDVTIIAKDSGDPSFTVEKTINVVVSDVNDNFPEF 5737

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +   YT Y++E    GA V +       ++A D+D   NAL+
Sbjct: 5738 SMSPYTFYITENNIPGASVFS-------VKAFDRDDGENALV 5772



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            LL KK LD E    + L VTA +    +     +V V +LD NDN P F+Q  Y   + E
Sbjct: 6249 LLLKKSLDREQKNKHVLFVTAVDGGRPQRTGTLNVTVLVLDTNDNRPIFSQEIYQVEIRE 6308

Query: 80   AAPIGALV 87
             A +G  V
Sbjct: 6309 NASVGTSV 6316



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 11/78 (14%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-------VIVHILDRNDNTPY 67
            ++P  GVLL K+ +D E     N++   TN+   KAV S       V V ILD NDN+P 
Sbjct: 1388 VNPTNGVLLVKQRVDREEL-CANVAPCITNL---KAVVSNPLEMHQVTVEILDINDNSPT 1443

Query: 68   FTQLNYTGYVSEAAPIGA 85
            F + N T  V E A +G+
Sbjct: 1444 FPEGNCTLEVLELAAVGS 1461



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHIL 59
            S   +LF+I     +   G +  K  +D+E ++IY + V A++          SV ++++
Sbjct: 5568 SKITELFSI-----NEKTGEITVKGQIDFEKSKIYEIDVQASDKGPVPLTSDKSVKINVI 5622

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P     +++  + E + IG  V        +I   D DS  N 
Sbjct: 5623 DVNDNPPEIEVTSFSNSIKEDSKIGTTV-------ALISVRDSDSGING 5664



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 14/106 (13%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRN 62
            + LFAI +       G +  K  +DYE   +Y L V A++         C VI+ + D N
Sbjct: 3991 IALFAIDRNT-----GEIRVKGHIDYETADVYKLDVQASDKGQPPMTTDCRVIIKVQDVN 4045

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            DN P     + +  V E +  G +V        +I  +D DS  N 
Sbjct: 4046 DNEPEILVTSLSSMVPEDSKHGTVV-------ALITVKDSDSGVNG 4084



 Score = 37.7 bits (86), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  K  +D+E T +Y L V A++         C VI+ + D NDN P     + +  V
Sbjct: 4787 GEIRVKGTVDFEETDVYKLDVEASDKGTPPLTGECRVIIKVKDVNDNPPEIEITSLSNTV 4846

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE +  G ++        ++   DKDS  N 
Sbjct: 4847 SEDSKPGTVI-------SLLSVTDKDSGLNG 4870



 Score = 37.7 bits (86), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L  +K LD E    + L +TA +    +      + +++LD NDN P  T+  YT  + E
Sbjct: 6966 LRLQKQLDRETKSRHKLVLTAIDGGTPQKSGTLEININVLDINDNMPVLTKDKYTAALRE 7025

Query: 80   AAPIGALVL 88
             +PIG  V+
Sbjct: 7026 NSPIGTTVI 7034



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYF 68
            L P+L      +++   LD E T  Y++++ A +           ++++  D NDN P F
Sbjct: 7958 LSPSLKENMFAVVSMSQLDRENTPHYDVTIIAKDSGDPSFTVEKTINVVVSDVNDNFPEF 8017

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +   Y  Y++E    GA V +       ++A D+D   NAL+
Sbjct: 8018 SMSPYAFYITENNIPGASVFS-------VKAFDRDDGENALV 8052



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  K  LD+E +  Y L + A++      +  C +I+ I D NDN P     + +  +
Sbjct: 6355 GEIKLKGDLDFEESETYKLDIQASDKGQPPLIGRCRLIIKIKDVNDNAPEIDVKSLSDSI 6414

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE + +  ++        +I   DKDS  N 
Sbjct: 6415 SEDSKLDTVI-------ALISVTDKDSGLNG 6438



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRND 63
            +LF+I     +   G +  K  +D+E ++ Y + V A++          SV ++++D ND
Sbjct: 7852 ELFSI-----NEKTGEITVKGQIDFEKSKSYEIDVQASDKGQVPLTSDKSVKINVIDVND 7906

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P     +++  + E + IG  V        +I   D DS  N 
Sbjct: 7907 NPPEIEVTSFSNSIKEDSKIGTTV-------ALISIRDSDSGING 7944


>gi|410956743|ref|XP_003984998.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-23-like [Felis catus]
          Length = 2968

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFT 69
           K ++HP  GV+ T+KPLD+E   +  L+V A  + G+ A  S  V+I  +D NDN P F 
Sbjct: 483 KFSIHPWLGVIRTQKPLDHETQPVVVLTVQA-QLGGSPAYSSTEVNITVIDVNDNHPVFP 541

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +       S+   I    L  T+L L  RA+DKDSE N  +
Sbjct: 542 K------ASDEVKISQTTLPGTALYLA-RAQDKDSEQNGFI 575



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 12/101 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            + P  G +  ++ LDYE+T+ YN  V A    +        SVIVH+LD NDN+P F  
Sbjct: 695 GIRPHTGWIYLRRQLDYESTQTYNFRVFAWIPEDRLSQNVSTSVIVHVLDENDNSPTF-- 752

Query: 71  LNYTGYVS-EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           L+   ++  E +P+   V+        I A D+DS  N  L
Sbjct: 753 LHDVLFLKVEESPVPQGVIGK------ITAIDRDSGKNGQL 787



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 18   PY---GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            PY   G L+  + LD E    +NL + A++        + IV I  LD NDN P F+ L 
Sbjct: 2209 PYKQTGYLVLLRSLDREVAASHNLVIVASDHGCPPLSSTAIVSIEVLDVNDNPPKFSSLK 2268

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            Y  +V E+ P+G+ +        V+ A D+D
Sbjct: 2269 YHAHVKESTPLGSHI-------TVVSANDRD 2292



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L T + LD E    + L +  +++      ++  + V +LD ND+ P F  L
Sbjct: 1476 AINETSGDLSTTRALDREQVSNFTLVILCSDLGDPPRSSLVQLQVRVLDDNDHGPSFPTL 1535

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            +Y   V E A +G +VL    L  V + E  + +T   L+G T+
Sbjct: 1536 HYQASVREDAEVGTVVLV---LSAVDKDEGLNGQTEYFLEGETS 1576



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR 61
            S+P   FAI +       G ++  K LD+E    Y L +  ++        +++V +LD 
Sbjct: 1986 SNPGTKFAIDRNT-----GAVMLVKTLDFEEATEYELLIQISDTV-HHTEGTLMVRVLDV 2039

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVLT 89
            NDN P F+Q +Y   V E+ P+G  VLT
Sbjct: 2040 NDNPPVFSQDSYQATVPESVPVGYSVLT 2067



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 18/111 (16%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVI--VHILDRNDNTPYFT 69
            +HP +G L+T  PLD E      L++TA++ A     + V S++  V ILD ND++P F 
Sbjct: 1161 IHPSFGTLVTASPLDRERVPAVMLTITASDQAVNVTDRRVGSLMAKVVILDVNDHSPTFM 1220

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
                  ++ E A +G+LV         I A+D D   N     ++L G+ N
Sbjct: 1221 SFPM-AHIKEDATVGSLVHH-------ITAQDPDEGRNGRVTYSILSGNEN 1263



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV-IVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE T  + L++ A++        +V  +++LD ND+ P F   N    V 
Sbjct: 2319 GVLYLIKPLDYEETTKFTLTIQASDEERKHFSFAVAFINVLDDNDHAPQFMFSNLNCVVP 2378

Query: 79   EAAPIGALVLTNTSL 93
            E  P+ + V +  +L
Sbjct: 2379 ENVPVFSTVCSVNAL 2393



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+     LDYE T  Y+L V AT+  M        + + + D NDN P F         
Sbjct: 1896 GVVTANAILDYEFTNSYSLIVQATDKGMPSLSGTSVITIQVTDTNDNAPAF--------- 1946

Query: 78   SEAAPIGALVLTNTSLPLVI 97
                P GA+ +   SLP VI
Sbjct: 1947 ---LPSGAVEIAENSLPGVI 1963



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K LDYE T  Y   V   + +    + S +   + + D+ND++P F +      
Sbjct: 1058 GDLFLSKELDYEMTSHYLFRVVTKDHSKTPPLNSTVFLNIDVEDQNDHSPSFQEELIVIS 1117

Query: 77   VSEAAPIGALV 87
            V E  PIG LV
Sbjct: 1118 VEENVPIGTLV 1128



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L + A +  G +A   V V I D NDN P F Q  Y   V
Sbjct: 1792 GELTVKEPKFLDFEVRNEVQLIILAESR-GHRAFSKVAVLIQDVNDNLPCFEQSVYQVSV 1850

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             E     A ++        + A D DS  N L++ S
Sbjct: 1851 PEGQFYNARIIQ-------VFATDLDSGLNGLIEYS 1879



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L++ A +  G   + S   + + +LD ND  P F Q  Y   
Sbjct: 1273 GLLTTTCPLDYEIKTQHILTLLALD-DGIPVLSSSQTLTITVLDVNDEAPVFQQNLYEAS 1331

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    G  V+        + A D+DS  N+
Sbjct: 1332 VKENQNPGEFVIR-------VEAMDRDSGINS 1356


>gi|395504750|ref|XP_003756710.1| PREDICTED: protocadherin beta-16-like [Sarcophilus harrisii]
          Length = 772

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
            LKP++   Y  LLT+  LD E+   YN+++T T++     K  C++ V I D NDN P 
Sbjct: 385 FLKPSIDNFY-TLLTQSSLDRESRVEYNITITVTDLGIPRLKTECNITVLISDINDNPPE 443

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ  YT Y+ E    A  IG+           ++A D+DS TNA
Sbjct: 444 FTQSAYTFYLQENNIPALHIGS-----------VKASDRDSGTNA 477



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  ++ LD+EA + Y + + AT+  G    C+V++ + D NDN P     ++T
Sbjct: 287 VNPTLGEIKMRRELDFEAIKSYEVDIEATDGGGLSGKCTVVIQVTDVNDNAPELVISSFT 346

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E +P         ++  V +  D+DS  N  +
Sbjct: 347 SPIPENSP--------ETVVAVFKIRDQDSGENGQM 374



 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ +K LD E      L++TA +           + V ++D NDN P F Q  Y   
Sbjct: 184 FAELVLEKTLDREVQPEVTLTLTALDGGSPPRSGTAQIRVLVVDINDNAPIFPQAQYEVQ 243

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG+LV+T       + A D D+  N 
Sbjct: 244 IPENSPIGSLVVT-------VSATDLDTGNNG 268


>gi|334311081|ref|XP_001377729.2| PREDICTED: protocadherin gamma-A2-like [Monodelphis domestica]
          Length = 834

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E    YN++VTA +           + +H+ D NDN P F+Q  Y+ Y
Sbjct: 401 YHSLVTDRALDREQVSEYNITVTAVDFGSPPLSTDTHIFLHVADINDNPPTFSQSAYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + + T       A+D DS+ NAL+
Sbjct: 461 IQENNPRGASIYSLT-------AQDPDSQENALV 487



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G LLT + LDYE  R Y +   A +  G  +   + V ++D NDN P  T  + T
Sbjct: 294 LNSETGELLTLQNLDYEDERFYMMEAEAQDGLGFWSRAKIHVTVVDVNDNAPEVTITSVT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E AP G ++        +    D+DS  N 
Sbjct: 354 SSIPENAPPGTII-------TLFHVHDRDSGKNG 380



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+  + LD E      + ++A +  G + + S    + V ILD NDN P FTQ  Y+
Sbjct: 191 YPELVLDRALDREKEPTLQIVLSAWD--GGEPIRSGTARIRVTILDVNDNAPVFTQPIYS 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  P G ++LT       + A D D   N+
Sbjct: 249 MNVPENVPQGTVLLT-------VNATDADEGINS 275


>gi|390459359|ref|XP_003732286.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin beta-10-like
           [Callithrix jacchus]
          Length = 761

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  ++ LDYE    Y L++ A +  G  A C V+V +LD NDN P     +++
Sbjct: 294 INPFSGEIFLRELLDYELVHSYKLNIQAIDGGGLSARCRVLVEVLDINDNPPELIMSSFS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y++E +P  AL         V + +D+DS
Sbjct: 354 NYIAENSPETALA--------VFKIKDRDS 375



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E     +L++TA +        +  VHI  LD NDN P FTQ  Y   
Sbjct: 191 YPELVLDKALDREEQGELSLTLTALDGGSPPRSGTSTVHIVVLDVNDNAPQFTQALYETQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G+L++        + AED DS  N 
Sbjct: 251 VPENSPVGSLIVK-------VSAEDVDSGVNG 275



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 474 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 523


>gi|363729524|ref|XP_417264.3| PREDICTED: protocadherin-16 [Gallus gallus]
          Length = 3258

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            L P  GVL T + LD E    Y+L+V   +       A  +V V +LD NDN P F Q +
Sbjct: 1763 LDPVSGVLSTARALDREQVAFYSLTVVVQDHGTPPRSATMTVNVRVLDLNDNAPGFAQAS 1822

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   V E  P+G+LVL        + AED D  TN 
Sbjct: 1823 YVVEVPEDLPVGSLVLQ-------LEAEDPDEGTNG 1851



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+  +PLD+EA  +YNL+V A +  +        V++ + D NDN P F +  Y   V
Sbjct: 2505 GALVLVEPLDFEAIPVYNLTVAALDRGLPQRSTTVPVLITVQDVNDNPPVFARAEYRTAV 2564

Query: 78   SEAAPIGALVL 88
            SE+ P G  +L
Sbjct: 2565 SESTPPGTELL 2575



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 20  GVLLTKKPLDY-EATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G L T +PLD  E T  Y+ ++TA +  G  ++  V V + D NDN P F  L+Y   +S
Sbjct: 613 GHLCTTQPLDRDEGTSAYDFTITAVDGGGLNSMVYVKVFLEDINDNRPVFYPLDYAASIS 672

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKD 103
             +  G  VL        + A DKD
Sbjct: 673 TQSMPGTAVLR-------VTAHDKD 690



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNY 73
            +H   G L   +PLD E    + L V AT++ G   A+  V + + D NDN PYF     
Sbjct: 2605 IHESTGALCLARPLDRETQASHALVVQATDVPGGHFALVPVAIEVKDVNDNKPYFPVEVL 2664

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +  + E  P G LV T       +RA D D+
Sbjct: 2665 SASMRENLPPGTLVTT-------LRAIDTDT 2688



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
           A+ P  G++ T  PLDYE      L+V AT+  G  A+ S   V+V + D NDN P F  
Sbjct: 499 AIDPATGIITTAAPLDYEKDPQPQLTVLATDR-GTPALSSSAVVLVALQDVNDNEPVFRS 557

Query: 71  LNYTGYVSEAAPIGALVLTNTS 92
             Y   + E  P+G   L  T+
Sbjct: 558 NFYNVSLKENTPVGTCFLQVTA 579



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y+L VTAT+      +A  + ++ ++D NDN P F Q  Y   + E    G+
Sbjct: 406 LDREERDSYDLRVTATDSGTPPLRAESTFVLQVIDINDNPPLFDQQEYKQSIPEVVYPGS 465

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            VL        + A DKD   N 
Sbjct: 466 FVLQ-------VTARDKDQGPNG 481



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 15/105 (14%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRND 63
            V  F++L+       G +    PLDYE    Y+L++ A++     +A  +VIV   D ND
Sbjct: 2278 VGTFSVLRYG-----GRIALTGPLDYEQRSHYSLTLRASDTRHETEANLTVIVE--DMND 2330

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P F+Q  Y   + E  P G+++LT       + A D DS +N 
Sbjct: 2331 NAPAFSQPFYQVTLPEHTPAGSILLT-------MSATDMDSGSNG 2368



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            L YEA+  Y LS+ A + +G   + S   ++VH+   +DN P F  L Y   V E  P+ 
Sbjct: 932  LQYEASAAYRLSIVARD-SGVPQLSSTFTLLVHVQAEHDNGPIFDTLTYRVEVREGVPVS 990

Query: 85   ALVLTNTSLPLVIRAEDKDSE 105
               L        +RA  +D+E
Sbjct: 991  TRFLQ-------VRALARDAE 1004



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHI 58
            S P Q F I         GV+   K LDYE  +++ L V A + A    V +  V +H+
Sbjct: 274 QSDPDQYFTIDSRT-----GVIKLNKGLDYEVRKVHELVVQARDRAVHPEVTTAFVTIHV 328

Query: 59  LDRNDNTP----YFTQLNYTGYVSEAAPIGALV 87
            D NDN P     F   + +  +SE A  G  V
Sbjct: 329 RDYNDNQPTMTIIFLSEDGSPQISEGAQPGQYV 361



 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L+P  G L   + L+ E    +NL+V A +    +   + ++ IL  D ND  P F +  
Sbjct: 1557 LNPSTGALSVVRALNREEVVQHNLTVVAADHGFPRRSATQLLSILVLDVNDEAPTFEKPE 1616

Query: 73   YTGYVSEAAPIGALVL 88
            Y  +V E  P G+ VL
Sbjct: 1617 YEAHVMENLPAGSPVL 1632



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 19/105 (18%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQL 71
            +H   G L TK  LD E    Y L V   +  GA    A  ++ V +LD NDN P F  L
Sbjct: 1131 IHTQTGELSTKHSLDRELQSSYQLLVIVQD-GGAPPRSATGTIYVTVLDENDNAPVF--L 1187

Query: 72   NYTG------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + TG       V E  P G LV +       ++A+D D   N  +
Sbjct: 1188 HITGGQELPVQVLEEKPSGLLVAS-------LQAKDPDEGENGTI 1225



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            + P  G + + + LD E    Y+    A + A  +   A   V V + D ND+ P F   
Sbjct: 1867 IEPQSGRIRSAQELDRERQPSYSFLAKAVDSAPWEPKSAAVRVTVTVQDVNDHAPAFLHS 1926

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              T  +S   P+  +V T       +RAED+D+  NA
Sbjct: 1927 PVTVSLSRHTPLKQVVAT-------MRAEDRDAGANA 1956



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATR-IYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            L  A+ P  G L T +P++++A +    L V A +       +  +V + +LD ND++P 
Sbjct: 2379 LDVAIDPSNGTLFTIRPVEFDANQPTLELVVEARDRGSPSLSSWATVQLQVLDVNDHSPI 2438

Query: 68   FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD-SETNALLD 111
            F   +Y   V E    G  VLT       + A D D S  NA  D
Sbjct: 2439 FQVPHYNASVPEDLRPGTTVLT-------LDAGDADLSRENAGFD 2476


>gi|47194716|emb|CAF87248.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 523

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 17/112 (15%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           L P+L      L+TK PLD E T  Y+L++TA + AG  ++ S   + V + D NDN+P 
Sbjct: 246 LSPSLKDKMYSLVTKSPLDREQTDKYDLTITAKD-AGQPSLSSERTITVVVSDVNDNSPE 304

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
           F+   YT Y+SEA   G  V         ++A D+D   NA      L DGS
Sbjct: 305 FSLSPYTFYISEANQPGTSV-------FAVKAFDRDENDNARVSYHILRDGS 349



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +L  +K LD E    ++L +TA  + G K       +++V++LD NDN P F++  Y+  
Sbjct: 42  ILTVQKSLDRETAGSHSLVLTA--LDGGKPPKSGEMNILVNVLDINDNAPVFSKDVYSVL 99

Query: 77  VSEAAPIGALVL 88
           + E AP+G  V+
Sbjct: 100 LQENAPVGTTVI 111



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +  K P+DYE    Y + V A++      K   SV++ I D NDN P     +++  +
Sbjct: 149 GEITIKGPIDYEENDRYEVEVEASDKGFVPLKTERSVMIEITDVNDNAPEIEVTSFSSLI 208

Query: 78  SEAAPIGALV 87
            E +  G  V
Sbjct: 209 PEDSRPGTTV 218


>gi|311271582|ref|XP_003133182.1| PREDICTED: protocadherin-15 isoform 7 [Sus scrofa]
          Length = 1879

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1016 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1076 KFYIGGVSEDARMFASVLR-------VKATDKDT 1102



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 758 EENLPAGTTFLQ-------IEAKDVD 776


>gi|311271572|ref|XP_003133181.1| PREDICTED: protocadherin-15 isoform 6 [Sus scrofa]
          Length = 1950

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVD 847



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|444728966|gb|ELW69398.1| Protocadherin-15 [Tupaia chinensis]
          Length = 2019

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 388 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 447

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 448 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 482



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            G +    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1156 GAIFVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1215

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1216 KFYIGGVSEDARMFASVLR-------VKATDKDT 1242



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 515 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 566



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ V +LD +DN+P FT   YT  V
Sbjct: 838 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAVKVLDIDDNSPVFTNSTYTVVV 897

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 898 EENLPAGTTFLQ-------IEAKDVD 916



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 171 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 219



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 625 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 684



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
            ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 935  ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 994

Query: 68   FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            F++  Y G V+  A  G  + T       + AED D
Sbjct: 995  FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 1023


>gi|311271576|ref|XP_003133183.1| PREDICTED: protocadherin-15 isoform 8 [Sus scrofa]
          Length = 1945

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVD 847



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|311271574|ref|XP_001924567.2| PREDICTED: protocadherin-15 isoform 1 [Sus scrofa]
          Length = 1948

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVD 847



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|311271584|ref|XP_003133184.1| PREDICTED: protocadherin-15 isoform 9 [Sus scrofa]
          Length = 1908

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 303 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 362

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 363 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 397



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 481



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1050 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1110 KFYIGGVSEDARMFASVLR-------VKATDKDT 1136



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 792 EENLPAGTTFLQ-------IEAKDVD 810



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 540 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 599


>gi|311271580|ref|XP_003133187.1| PREDICTED: protocadherin-15 isoform 12 [Sus scrofa]
          Length = 1925

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 412



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 807 EENLPAGTTFLQ-------IEAKDVD 825



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614


>gi|162312016|gb|ABX84114.1| hedgling [Nematostella vectensis]
          Length = 3480

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 8/85 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV++T  PLD+E    Y L VTAT+ +   A  +V + +++ ND TP FTQ NYT  V E
Sbjct: 2075 GVIMTTTPLDFEEKSQYGLEVTATD-SKYTAKTNVTIRVINLNDITPAFTQQNYTASVRE 2133

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDS 104
             +P      T+TS+ + + A D+DS
Sbjct: 2134 NSP------TSTSV-VKVSASDRDS 2151



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K  ++P  G++ TK+PLD E    Y+L VTA +       AV ++ + I D NDN+P F+
Sbjct: 1753 KFEVNPATGLVTTKRPLDREDQASYSLRVTAMDHGKPSQSAVAAITLTINDLNDNSPQFS 1812

Query: 70   QLNYTGYVSEAAPIGALVL 88
            Q  YT  V+E    G+ +L
Sbjct: 1813 QSKYTLTVTENTANGSNIL 1831



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ TK   D E    Y +++ A +          +V + ILD NDN P F+   YT  V
Sbjct: 826 GVIRTKGAFDRETKASYQVALRAQDGGSPSRSGQATVEIEILDVNDNRPVFSSAQYTASV 885

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   IGA ++T       + A DKD+  NA L
Sbjct: 886 DEDVAIGAAMVT-------VTASDKDNGNNADL 911



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            L P  G+L  +  LD E    Y L V A++    +   +  +H+  LD NDN P F +  
Sbjct: 1447 LDPRSGILSVRSTLDRETIPSYTLVVKASDAGSPQQSITASIHVSVLDVNDNAPRFEKSL 1506

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++G + E A + + VL        ++ EDKD  +N  +
Sbjct: 1507 FSGEIREDASVHSTVLQ-------VKVEDKDEGSNGAI 1537



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + TK PLD E   +Y L +   +       +V  VI+ ++D +DN P F    Y   +
Sbjct: 2485 GDISTKVPLDREQQAVYTLRIGVADKGNPSLSSVADVIIDVIDEDDNCPRFQPTEYNVTI 2544

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            SE+ P GA ++  T+     R  D D +T+
Sbjct: 2545 SESLPRGASIVQVTA-----RDIDGDKDTS 2569



 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYF 68
            G +L+K PLDYE T  Y L+VTA +       A   V + I++ NDN P F
Sbjct: 1555 GFVLSKTPLDYETTAAYQLTVTARDGGSPSKSATAQVKITIINVNDNVPSF 1605



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+   + LD+E    Y L ++ T+           +++++ D NDN P F+   Y   V
Sbjct: 931  GVVTVSRSLDFEQRSSYALGLSVTDRGSPPLTDTSHLLINVNDINDNPPVFSPSAYQSRV 990

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P G  V+        + A D+DS TN  L
Sbjct: 991  KENTPAGTQVIQ-------VSATDRDSSTNGAL 1016



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E T  Y L V AT     G     +  + +LD NDN P F   +Y   +
Sbjct: 1657 GLISVAKRLDRETTANYTLVVRATETGSQGESVYNNATIRVLDVNDNAPVFNPGSYAKSL 1716

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  PIG  V         + A D+D   NA
Sbjct: 1717 HENLPIGQTVAK-------VTATDRDEGENA 1740



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPYFT 69
            A++   GVL  KK ++ E    Y L++ A++    M  +    +V+V+  D NDN P F 
Sbjct: 1964 AINAMNGVLTVKKEINRETVPTYTLTIRASDRGSPMMTSDKELTVVVN--DVNDNPPVFN 2021

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +Y G V E +     VLT       + A+D D   NA+L
Sbjct: 2022 SQSYIGSVRENSAQSTSVLT-------VAADDSDVGANAVL 2055



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 7    LFAILKP------ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHI 58
            +F I+K        +    G++   K  DYE    Y+L+V A +           V + I
Sbjct: 1017 VFGIIKGNDDGVFTIDGSTGIISIAKSPDYENKTRYDLTVQARDRGVPVKYDTAQVTIFI 1076

Query: 59   LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
             D ND++P F+  NY+  + E+  IG+ V+T T+  L
Sbjct: 1077 EDVNDHSPVFSPSNYSKQIPESTVIGSTVVTVTATDL 1113



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           +  T +  D E+   Y L+V A + A    K    V++ + D NDN P F   +Y   + 
Sbjct: 522 ITTTGRKFDRESESRYRLTVLAQDAANRCHKGRTVVVIDVKDENDNAPEFPLNSYVFNIR 581

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P   +         ++ A D+DS TNA +
Sbjct: 582 ENTPAAQVA--------IVTATDRDSGTNAAI 605



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L   K LD EA   Y+L V A++     A+ ++ + + D NDN P+F    Y   V E
Sbjct: 726 GRLTLNKMLDREAKSAYDLVVEASD-GNIIAIAALKITVDDVNDNAPFFALSVYKTGVYE 784

Query: 80  AAPIGALVLTNTSLPL 95
              +G++V   T++ L
Sbjct: 785 DVAVGSIVRQLTAVDL 800



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY-VSEAAPIG 84
            +D EA   YNL+++A +      V +  V I   D NDN+P F   N T Y + E   IG
Sbjct: 1874 VDREALASYNLTISAKDSGVPPWVSTAFVAITVADENDNSPIFAS-NETSYGIDEGVSIG 1932

Query: 85   ALVLTNTSLPLVIRAEDKDSETNALL 110
            + V        V+ A D+D  +NA +
Sbjct: 1933 SRV-------AVVTATDRDEGSNAQV 1951



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 9/73 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFT---QLNYT 74
            G + T+ PLD E    Y+L++ A + +  +  A  +V + I D NDN P FT   + N  
Sbjct: 1348 GEITTRVPLDRETIASYSLTINADDGSLVRFMAATTVNISIADENDNQPTFTGPSRFN-- 1405

Query: 75   GYVSEAAPIGALV 87
              +SE +P G  V
Sbjct: 1406 --ISEDSPTGTRV 1416



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   + LD E   IY L V A +      A     V + + D NDN P F        
Sbjct: 2277 GVITNVRKLDREQVSIYTLYVQAVDQGNPRLASEWVPVHIRVQDENDNAPRFVSSGNCN- 2335

Query: 77   VSEAAPIGALV 87
            VSE A +GA++
Sbjct: 2336 VSENAVVGAII 2346



 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 14/109 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++   G++  K  LDYE    Y ++VTA +       ++  V V + D NDN P F + 
Sbjct: 1237 SINTSTGLITLKTQLDYEKKTQYMVTVTAKDGGTPSRSSLTVVKVMVDDVNDNPPQFAKS 1296

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
             YT  V E    G  V         + A D DS  N     ++L G+ N
Sbjct: 1297 LYTCTVGENLAAGVAV-------CYVTATDADSGANGKISYSILSGNEN 1338


>gi|311271578|ref|XP_003133185.1| PREDICTED: protocadherin-15 isoform 10 [Sus scrofa]
          Length = 1928

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 412



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 496



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 807 EENLPAGTTFLQ-------IEAKDVD 825



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614


>gi|311271570|ref|XP_003133180.1| PREDICTED: protocadherin-15 isoform 5 [Sus scrofa]
          Length = 1955

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDKDT 1178



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 834 EENLPAGTTFLQ-------IEAKDVD 852



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|194219783|ref|XP_001504040.2| PREDICTED: protocadherin gamma-C5-like [Equus caballus]
          Length = 944

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+    A  ++ ++I D NDN P+FTQ  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYIIELLASD-AGSPPLHAHLTIRLNISDVNDNAPFFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENQPPGSLLCT-------VAASDPDTGDNARL 489



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD EA   + L +TA +  +        + V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDREAQARHQLVLTAVDGGIPAHSGTTLISVTVLDINDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            AP+G L+L        + A D D  TN  LD
Sbjct: 254 NAPMGTLLLR-------LNATDPDEGTNGQLD 278



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     +
Sbjct: 295 LDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDDNDNAPEVLLAS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               V E  P+G +V        +    D+DS  N+
Sbjct: 355 LVNPVLENTPVGTVV-------GLFNVRDRDSGKNS 383


>gi|410974945|ref|XP_003993899.1| PREDICTED: protocadherin-15 isoform 3 [Felis catus]
          Length = 1923

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1086 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1145

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1146 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1178



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 834 EENLPAGTTFLQ-------IEAKDVD 852



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|410974947|ref|XP_003993900.1| PREDICTED: protocadherin-15 isoform 4 [Felis catus]
          Length = 1674

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1081 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1140

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1141 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|402880813|ref|XP_003903984.1| PREDICTED: protocadherin-15, partial [Papio anubis]
          Length = 655

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 287 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 346

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 347 YQGYILESAPVGATIADSLNLTSPLRIVALDKDIE 381



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 425 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 476



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 70  KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 118


>gi|345791457|ref|XP_003433493.1| PREDICTED: protocadherin-15 isoform 1 [Canis lupus familiaris]
          Length = 1683

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1178



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHDSYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDSYQLVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 834 EENLPAGTTFLQ-------IEAKDVDLGAN 856



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|292620495|ref|XP_001340569.3| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 802

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ KK LD E   ++NL +TA +  +       ++IV +LD NDN P F + +YT ++SE
Sbjct: 195 LVLKKALDREEQAVHNLILTAVDGGVPSRSGTANIIVQVLDTNDNAPQFDKDSYTVHLSE 254

Query: 80  AAPIGALVL 88
            APIG+LV+
Sbjct: 255 NAPIGSLVV 263



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           L+   G +  K+ ++YE  +IYN+ V AT+ A       C + + I D NDN P  +  +
Sbjct: 296 LNSETGEIRVKEIINYEDFKIYNMEVIATDKASNSLTGKCKLTILITDMNDNHPEISIRS 355

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 356 VTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 387



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 405 YYELLVSEPLDREKLPEYDITITVTDRGNPPLFDNETITLELLDVNDNVPQFPQTFYTIP 464

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 465 VMENNAPGA 473


>gi|335301961|ref|XP_003359334.1| PREDICTED: protocadherin-15 [Sus scrofa]
          Length = 1785

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 525



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1094 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1153

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1154 KFYIGGVSEDARMFASVLR-------VKATDKDT 1180



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 836 EENLPAGTTFLQ-------IEAKDVDLGAN 858



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 584 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 643


>gi|292616200|ref|XP_001920988.2| PREDICTED: neural-cadherin-like [Danio rerio]
          Length = 2518

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  L P        +L  +PLDYE TR + L V A N+A     A  +V ++I D 
Sbjct: 631 PVRFY--LTPNREDGSASILVAEPLDYETTRNFMLRVRAQNVAPVPLAAFTTVHINITDV 688

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVL 88
           NDN P+FT   Y   V+E   IG LVL
Sbjct: 689 NDNVPFFTSSIYEASVTEGVEIGTLVL 715



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
           ++ P  GV++T    D E+ R Y ++VTAT+ A      +C + + ILD NDN P F  L
Sbjct: 427 SIDPETGVIVTAIKFDRESQREYAVTVTATDQAADPLIGICQLNILILDENDNNPKFENL 486

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y  ++ E   IG      TS  L + A D D  TNA +
Sbjct: 487 RYEYFLREDTMIG------TSF-LRVAAHDDDYSTNAAI 518



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +   +PLDYE  ++Y L V A++    +   +VIV I+++ND  P F+   Y 
Sbjct: 860 MEPEVGTIFIAQPLDYEQNKLYKLHVLASD-GKWEHYATVIVTIVNKNDEAPVFSVNEYY 918

Query: 75  GYVSE---AAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
           G V+E    +P+  L +T +         DKD++  AL
Sbjct: 919 GSVTEELDGSPVFVLQVTASD-------PDKDADQEAL 949



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL--NYTG 75
            G +  ++ LD E   ++   V AT+  G        VI+++ D NDN P F     +  G
Sbjct: 969  GKIYAQRTLDREVRAVWRFVVLATDEGGEGLTGFTDVIINVWDINDNAPIFACAPDSCHG 1028

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V+E +P G  V+  T+  L    +D     NA+L
Sbjct: 1029 DVAENSPPGTSVMEMTATDL----DDAAVGQNAML 1059



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 50/108 (46%), Gaps = 13/108 (12%)

Query: 3   HPVQLFAILKPALHPPYGVLLTKKPLDYEATR-IYNLSVTAT-NMAGAKAVCSVIVHILD 60
           +P  LF+I      P  G +   + +DYE+ +  Y L V A+ N     +   V V I D
Sbjct: 103 NPSSLFSI-----QPETGEISLTRSIDYESDQHRYLLLVRASENQDSLSSAAEVRVIITD 157

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ND  P F Q  Y+    +  P    V T TSL L + A D DSE NA
Sbjct: 158 ENDCVPEFLQSIYS---KDGVP--ETVTTATSL-LQVSASDCDSEQNA 199



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----------KAVCSVIVHILDRNDN 64
           + P  G + T+   D E    Y L V + +   +               V + I D NDN
Sbjct: 747 IDPELGTIFTEAVFDRETKGSYLLEVKSVDGWESARPGKHGQPNSDTAYVRIFISDVNDN 806

Query: 65  TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P F Q  Y   V E A +G+ VLT       + A D+D   NA L
Sbjct: 807 KPVFAQPVYEVDVDEDADVGSTVLT-------VSANDEDEGANAKL 845


>gi|345328668|ref|XP_003431293.1| PREDICTED: protocadherin gamma-B7-like [Ornithorhynchus anatinus]
          Length = 915

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G ++T   LDYE+ + Y L V A++  G  A C V++ ILD NDN P  T  + +
Sbjct: 326 LDPNSGEIVTGWSLDYESAKGYELDVEASDGGGLMAQCKVVIEILDENDNAPEVTFASSS 385

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E +  G ++        +IR  D+DS  N 
Sbjct: 386 SSLPEDSEPGTVI-------ALIRIRDRDSGDNG 412



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+T   LD E T  YN++VTA +        S  + +L  D NDN P F+Q  Y  YV E
Sbjct: 436 LITAGFLDREQTAEYNITVTARDRGNPPLTTSKTISLLVADVNDNPPVFSQTTYLAYVPE 495

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               GA +         I A D+D ++NA +
Sbjct: 496 NNRPGASIYR-------ISASDRDLDSNARI 519



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + +++ D NDN P F+Q  Y   
Sbjct: 223 YPELVLEKLLDREEKSFHHLVLTAVDGGDPVRSGTAQIRINVTDANDNPPVFSQEVYKIS 282

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E+ P G+ VL        + A D+D   NA
Sbjct: 283 LRESLPQGSPVLR-------VEASDRDEGVNA 307


>gi|345308717|ref|XP_001521137.2| PREDICTED: hypothetical protein LOC100092558 [Ornithorhynchus
            anatinus]
          Length = 1660

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G ++T   LDYE+ + Y L V A++  G  A C V++ ILD NDN P  T  + +
Sbjct: 1080 LDPISGEIVTGWSLDYESAKGYELDVEASDGGGLMAQCKVVIEILDENDNAPEVTFASSS 1139

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E +  G ++        +IR  D+DS  N 
Sbjct: 1140 SSLPEDSEPGTVI-------ALIRIRDRDSGDNG 1166



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 14/107 (13%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDR 61
           P +L   +   LH     L+T   LD E    +N+++TAT+        ++ +  H+ D 
Sbjct: 391 PFKLEKSIDSYLH-----LVTDGVLDRELISDFNITLTATDRGSPPLSFNIHISLHVSDT 445

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           NDN P F Q  Y+ Y+ E  P GA +   T       A D DSE N+
Sbjct: 446 NDNPPSFQQTAYSVYIPENNPRGASIFRVT-------ARDPDSEENS 485



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
            L+T   LD E T  YN++VTA +        S  + +L  D NDN P F+Q  Y  YV E
Sbjct: 1190 LITAGVLDREQTAEYNITVTARDRGNPPLTTSKTISLLVADVNDNPPVFSQTTYLAYVPE 1249

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                GA +   T       A D+D ++NA +
Sbjct: 1250 NNRPGASIYRVT-------ASDRDLDSNARI 1273



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI----LDRNDNTPYFTQLNYTGYV 77
           L+ ++ LD E   + +L +TA++  G   V S   HI    LD NDN P FTQ  Y   V
Sbjct: 194 LVLERVLDREEEAVLHLVLTASD--GGDPVRSGTAHIHVIVLDINDNAPVFTQPVYQVRV 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P+G  +L        + A D D  TN+
Sbjct: 252 REDVPVGTRILR-------VNATDPDEGTNS 275



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+ +K LD E    ++L +TA +           + +++ D NDN P F+Q  Y   
Sbjct: 977  YPELVLEKLLDREEKSFHHLVLTAVDGGDPVRSGTTQIRINVTDANDNPPVFSQEVYKIS 1036

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E+ P G+ VL        + A D+D   NA
Sbjct: 1037 LRESLPQGSSVLR-------VEASDRDEGVNA 1061


>gi|291230194|ref|XP_002735053.1| PREDICTED: hedgling-like [Saccoglossus kowalevskii]
          Length = 2498

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
           K LDYE T IYNL+VTA++  G     ++  S+++ I DRNDN P F Q  Y   + E  
Sbjct: 517 KDLDYEDTAIYNLTVTASDCNGGPGSLQSNASIVIQINDRNDNAPVFEQFLYEYILEEDT 576

Query: 82  PIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            IG  V +       + A D D E N  +D
Sbjct: 577 EIGHSVDS-------LVANDLDDELNGRVD 599



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            +D+E TR YNL+V A +        +V VHI   D NDN PYFT   Y+  +    PIG 
Sbjct: 1878 IDFERTRYYNLTVMAKDGGVEPMTSTVTVHIDIHDVNDNAPYFTSEEYSVDIPANTPIGF 1937

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            +V+        I AED D+  N+L+
Sbjct: 1938 IVVN-------ITAEDIDTGNNSLI 1955



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 11/97 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA------VCSVIVHILDRNDNTPYFTQLNY 73
            GV+ T + LD E    Y+  + A  + G  A      V  +++ +LD NDN+P F + +Y
Sbjct: 1147 GVVTTTELLDRETRDTYSYEIVA-KLEGESACLFDPVVAEILITVLDENDNSPQFLETSY 1205

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +G + E +    +V    ++   I A D DS+ NAL+
Sbjct: 1206 SGTIDENSSSNTVV----TMTKDIHATDIDSDYNALI 1238



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L     LD E T  Y L++TA +     ++   +VI+ I D NDN P FTQ  Y+G +
Sbjct: 617 GELYVTGELDRERTPFYILNITACDNGKTISQTKTTVIIEISDVNDNAPSFTQEVYSGNL 676

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E        L N S  + + AED DS +N 
Sbjct: 677 QEN-------LNNGSYIISVSAEDPDSGSNG 700



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 20  GVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTG 75
           G + T +  DYE T  R++  +VT  +M     + S  V++ +LD NDN P FTQ  Y G
Sbjct: 718 GNIYTNRVFDYEVTQDRLHTFNVTGMDMGMPSRISSSLVVIRVLDVNDNPPMFTQDQYNG 777

Query: 76  YVSEAA 81
            + + +
Sbjct: 778 TILDGS 783



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 28   LDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            LD E  + Y L VTA++  G      ++ +V + ILD NDN P F Q  Y   + E   +
Sbjct: 1269 LDRETNKQYELQVTASDRNGEHNSLSSMRTVTITILDVNDNHPQFEQQTYKYSIEENVRV 1328

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G ++ T       + A D D   NA++
Sbjct: 1329 GFVIDT-------LTATDADEGNNAII 1348



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC-----SVIVHILDRNDNTPYFTQLNYT 74
           G++ T   LD E    ++ +V    +  +K         + + +LD NDN+P+FT   YT
Sbjct: 400 GIVTTLSSLDREREYSFHYAVIGRIINESKCFNLPVAKELFITVLDVNDNSPHFTSDVYT 459

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           G+V E + + A V    ++   I+A DKD   NA +
Sbjct: 460 GFVDENSDVDASV----TMITPIQAIDKDEGMNAAI 491



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 20   GVLLTKKPLDYE--ATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G + T   LDYE    R Y     A + +     +  +VIV I D NDN+P FT   Y G
Sbjct: 1444 GEIYTSSKLDYEDPEGRQYEFYAYARDSSHPFHTSTSTVIVTIKDINDNSPQFTDDRYNG 1503

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V        +VLT       + A DKDS+ N  +
Sbjct: 1504 TVEHGQRAEHVVLT-------VSATDKDSDENGRI 1531



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 20/124 (16%)

Query: 1    MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK------AVCSV 54
             +H V  F+I     +   G + T   LDYE  + ++ SV A +    +          V
Sbjct: 1638 FTHRVDAFSI-----NISTGEIYTVAKLDYELNKHHSFSVVAMDADRNREPRQRMTYTPV 1692

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----L 109
            +V+++D NDN+P FT  +Y   + E        +T+ ++   + A DKD   NA     +
Sbjct: 1693 LVNVIDVNDNSPAFTNSHYMMTMLE----DDYTITSDTVIGKVSANDKDENINAEISYQI 1748

Query: 110  LDGS 113
            +DG+
Sbjct: 1749 IDGN 1752


>gi|410974949|ref|XP_003993901.1| PREDICTED: protocadherin-15 isoform 5 [Felis catus]
          Length = 1672

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1081 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1140

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1141 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|347543895|gb|AEP02520.1| PCDH15, partial [Cynopterus sphinx]
          Length = 1902

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 328 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 387

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 388 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 422



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1075 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1134

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1135 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1161



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 455 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 506



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 111 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 159



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 757 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTITLAIKVLDIDDNSPVFTNSTYTVVV 816

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 817 EENLPAGTTFLQ-------IEAKDVD 835



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 565 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 624


>gi|345791455|ref|XP_851607.2| PREDICTED: protocadherin-15 isoform 3 [Canis lupus familiaris]
          Length = 1678

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDSYQLVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|311271562|ref|XP_003133177.1| PREDICTED: protocadherin-15 isoform 2 [Sus scrofa]
          Length = 1681

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDKDT 1178



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 834 EENLPAGTTFLQ-------IEAKDVD 852



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|402872795|ref|XP_003900287.1| PREDICTED: protocadherin beta-7 [Papio anubis]
          Length = 795

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTKHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           I A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------ISATDRDSGTNA 484



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V++ + D NDN P     + T
Sbjct: 294 INPTSGSLHLKAELDYEAIQTYTLTIQAKDGGGLSGKCTVVIEVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E         ++ ++  V R  D+DS  N 
Sbjct: 354 SPIAEN--------SSETVVAVFRIRDRDSGNNG 379



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F Q  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDINDNAPDFLQSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSIVVS-------VSARDLDTGSNG 275


>gi|281346572|gb|EFB22156.1| hypothetical protein PANDA_018331 [Ailuropoda melanoleuca]
          Length = 989

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 288 MHPKTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFSSLHIEILDENNQSPYFTMPS 347

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 348 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 382



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV      G 
Sbjct: 415 QPVDREEQQTYTFSITAFDGVQESKPVIVNIRVMDANDNTPTFPEISYDVYVYTDMSPGD 474

Query: 86  LVLTNTSL 93
            V+  T++
Sbjct: 475 SVIQLTAM 482



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 71  KKVGTVIYHEVRIVVRDRNDNSPMFKHESYYATVNELTPVGTTIFTGFS 119



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 717 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 776

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 777 EENLPAGTTFLQ-------IEAKDVD 795



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 525 RTYALTVQAADNAPPTERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 584



 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYE+      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 814 ALHPFTGELSLLRSLDYESLPEQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 873

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
           F++  Y G V+  A  G  + T       + AED D+
Sbjct: 874 FSKRIYKGMVAPDAVKGTPITT-------VYAEDADT 903


>gi|326918941|ref|XP_003205743.1| PREDICTED: protocadherin Fat 4-like [Meleagris gallopavo]
          Length = 5008

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L   KPLD+E  + ++L VTAT+         CSV ++++D NDN+P F+  
Sbjct: 3162 AINTTTGTLTLAKPLDFELCQKHDLIVTATDGGWVSRTGFCSVTINVIDVNDNSPAFSPE 3221

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS  NA++
Sbjct: 3222 DYFPKVLENAPSGTTVIR-------LNASDADSGPNAVI 3253



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 22/113 (19%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ A++           VI+++LD NDN P F+Q+ ++  V
Sbjct: 2747 GEIRSIRPLDREKLSQYTLTIKASDKGTPLQSTTVKVIINVLDENDNAPRFSQI-FSASV 2805

Query: 78   SEAAPIGALV-------------------LTNTSLPLVIRAEDKDSETNALLD 111
             E AP+G  V                   + +TSLP +I     D   + LL+
Sbjct: 2806 PENAPLGFTVTRVTTSDEDIGMNAISRYSIRDTSLPFIINPSTGDITVSRLLN 2858



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++++ D NDN P F   
Sbjct: 1403 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIYVRDFNDNPPNFPAG 1462

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  P+G+ V++       + A D D++ N  L
Sbjct: 1463 DIFKSIIENIPVGSSVIS-------VTANDSDADINGQL 1494



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L++ A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1930 LNPVTGVFNLTRALDYEAQQYYILTIRAEDGGGQFTTIRVYFNILDINDNPPVFSMTSYS 1989

Query: 75   GYVSEAAPIGALVL 88
              + E    G+ +L
Sbjct: 1990 TSLMENLAPGSAIL 2003



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYF 68
           L P+    +  L+++  LD EAT  Y L V   +      +    V V + D NDN P F
Sbjct: 181 LNPSGEGAFLHLVSQGGLDREATPSYQLLVQVEDKGEPRRRGYLQVNVTVQDINDNPPVF 240

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +Q  Y   V E AP+GA VL        + A D D  TNA
Sbjct: 241 SQTLYQARVPEDAPVGASVLQ-------VAAADADEGTNA 273



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           P Q+F      L P  G L T   LD E    ++L V AT++      +V  V V +LD 
Sbjct: 667 PRQVFR-----LDPVSGKLSTISQLDREEQAHFSLQVLATDLGSPPLSSVARVNVSLLDV 721

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLT 89
           NDN+P F  + Y  ++ E  P G  V T
Sbjct: 722 NDNSPVFYPVQYFAHIQENEPAGTYVTT 749



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD+EAT  Y+L + A +       + C++ + +LD NDN+P F +   +  V E   +G 
Sbjct: 1312 LDHEATASYSLVIQAVDSGAVPLSSTCTLSIDVLDENDNSPSFPKSILSVDVLENMRVGE 1371

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1372 LVSS-------VTATDSDSGDNADL 1389



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
           +H   G++ TK  LD E    Y L V AT+    ++    IV I  LD  DN P F Q  
Sbjct: 777 VHSKTGIITTKIALDREERTAYQLQVVATDGGHLQSQNQAIVTITVLDTQDNPPVFNQGM 836

Query: 73  YTGYVSEAAPIGALVLT 89
           Y   V E   +G  V T
Sbjct: 837 YGFVVFENVALGYHVGT 853



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E    Y L V A++    KA+ S   V+V + D NDN P F   
Sbjct: 2434 INPSTGQIITSALLDRETRENYTLVVVASDGGYPKALSSSTSVLVAVADVNDNPPKFQHH 2493

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y  +V      G+ V         +   D D+ +NA L
Sbjct: 2494 PYVTHVPSPTTSGSFV-------FAVTVTDADTGSNAEL 2525



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  GV+  ++ LDYE  + Y+L+V AT+            ++ +LD NDN P     Y
Sbjct: 297 VDPESGVIRIREHLDYELCQQYSLTVQATDRGVPALSGRAEALIRLLDVNDNEPRVKFRY 356

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A  G +V
Sbjct: 357 FPATSRFASVDENAAPGTVV 376



 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  ++ V + D NDN P F   NY  
Sbjct: 1087 PDGQLYIKSELDRELQERYVLLVVASDRAVEPLNATVNITVILEDVNDNRPLFNSTNYVF 1146

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            Y  E    G+ V         I A DKD
Sbjct: 1147 YFEEEQSGGSYVGK-------INAVDKD 1167



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL  ++PLD E    Y+L V   +MA   A        V + +LD ND+ P F     T
Sbjct: 2037 GVLSIQQPLDREKQSFYSLVVQVHDMAPLPASRYTSTAQVSIILLDVNDSPPSFISPKLT 2096

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2097 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2125



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T+  LDYE  + Y+L++ A N+   +  +  SV + +   N+  P F    
Sbjct: 3267 IDPNTGTITTQGFLDYETKQSYHLTIKAFNVPDEERCSFASVNIQLEGTNEYVPRFVSKL 3326

Query: 73   YTGYVSEAAPIGALV 87
            Y   VSEAA  G +V
Sbjct: 3327 YYFEVSEAASEGTIV 3341



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD EA   Y L+V AT+        S  VIV +LD NDN P F Q  Y   + E      
Sbjct: 2151 LDREAVSNYTLTVVATDKGQPSLSSSTDVIVIVLDINDNNPIFAQKLYRVELEEN----- 2205

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
              LT T L  V+ A D D  TN 
Sbjct: 2206 -TLTGTDLIQVL-AADGDEGTNG 2226



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 36   YNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
            Y + + A++M   +   + I  V + D NDN P F QL+Y   + E+ P+ +        
Sbjct: 1001 YQVEILASDMGVPQLSSTFILTVSVHDVNDNPPVFDQLSYEITILESEPVNSRFFK---- 1056

Query: 94   PLVIRAEDKDSETNA 108
               ++A DKDS  N 
Sbjct: 1057 ---VQASDKDSGVNG 1068


>gi|326673333|ref|XP_003199844.1| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 802

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ KK LD E   ++NL +TA +  +       ++IV +LD NDN P F + +YT ++SE
Sbjct: 195 LVLKKALDREEQAVHNLILTAVDGGVPSRSGTANIIVQVLDTNDNAPQFDKDSYTVHLSE 254

Query: 80  AAPIGALVL 88
            APIG+LV+
Sbjct: 255 NAPIGSLVV 263



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           L+   G +  K+ ++YE  +IYN+ V AT+ A       C + + I D NDN P  +  +
Sbjct: 296 LNSETGEIRVKEIINYEDFKIYNMEVIATDKASNSLTGKCKLTILITDMNDNHPEISIRS 355

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            T  V E   +  ++        V+   DKDS  N  +D
Sbjct: 356 VTSPVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 387



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 405 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 464

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 465 VMENNAPGA 473


>gi|311271566|ref|XP_003133179.1| PREDICTED: protocadherin-15 isoform 4 [Sus scrofa]
          Length = 1792

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 530



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1099 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1159 KFYIGGVSEDARMFASVLR-------VKATDKDT 1185



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 841 EENLPAGTTFLQ-------IEAKDVDLGAN 863



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 589 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 648


>gi|358413168|ref|XP_003582484.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-C5 [Bos taurus]
 gi|359067613|ref|XP_003586364.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-C5 [Bos taurus]
          Length = 840

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A + AG+    A  ++ ++I D NDN PYFTQ  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYIIELLAHD-AGSPPLHAHLTIRLNISDVNDNAPYFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNARL 489



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDANDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPVLESTPVGTVV-------GLFNVRDRDSGRNG 383



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E    + L +TA +    A++  ++I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDRETQARHQLVLTAVDGGVPARSGTTLISVTVLDINDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            AP+G L+L        + A D D  TN  LD
Sbjct: 254 NAPVGTLLLR-------LNATDPDEGTNGQLD 278


>gi|410974941|ref|XP_003993897.1| PREDICTED: protocadherin-15 isoform 1 [Felis catus]
          Length = 1679

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1086 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1145

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1146 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1178



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 834 EENLPAGTTFLQ-------IEAKDVDLGAN 856



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|311271564|ref|XP_003133178.1| PREDICTED: protocadherin-15 isoform 3 [Sus scrofa]
          Length = 1676

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|410974951|ref|XP_003993902.1| PREDICTED: protocadherin-15 isoform 6 [Felis catus]
          Length = 1681

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1088 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1147

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1148 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1180



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 525



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 836 EENLPAGTTFLQ-------IEAKDVDLGAN 858



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 584 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 643


>gi|335301958|ref|XP_003359333.1| PREDICTED: protocadherin-15 [Sus scrofa]
          Length = 1674

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|291404353|ref|XP_002718531.1| PREDICTED: protocadherin 15 isoform 1 [Oryctolagus cuniculus]
          Length = 1902

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 412



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         + + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVVINIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 807 EENLPAGTTFLQ-------IEAKDVD 825



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614


>gi|410974959|ref|XP_003993906.1| PREDICTED: protocadherin-15 isoform 10 [Felis catus]
          Length = 1528

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1081 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1140

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1141 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|326435630|gb|EGD81200.1| tyrosine phosphatase [Salpingoeca sp. ATCC 50818]
          Length = 8158

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G + T  PLD E    Y  ++ AT+ A G      V++ +LD NDNTP F    Y   V 
Sbjct: 618 GAISTATPLDRETQSTYVATLIATDTATGQTDRMQVVISVLDVNDNTPQFESSMYIVEVD 677

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           E  P+GA VLT       ++A D D+ +N ++D
Sbjct: 678 EGQPVGAHVLT-------VQAVDDDANSNGVID 703



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G L T   LD E    Y L+V+A++  G +AV +V+V ++D NDN P F +  Y 
Sbjct: 4012 IDPTTGWLSTNAVLDREEEDAYALTVSASDPGGRRAVATVLVRVVDVNDNAPVFERERYE 4071

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              + E    G+ VLT        RA D+D
Sbjct: 4072 ATIIENFNFGSTVLT-------ARASDRD 4093



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            AL    G L   KPLD E    Y L++ AT+    + + +   ++V + D NDN P F Q
Sbjct: 5449 ALDALSGRLRVLKPLDRETRDRYALTIVATDRGVEQQLQTTFDMLVRVQDVNDNAPQFDQ 5508

Query: 71   LNYTGYVSEAAPIGALVL 88
            + Y G+VSE A  G +VL
Sbjct: 5509 VLYEGHVSEDASTGTVVL 5526



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A+    G +     LD E   +  L++ A +  G +   + ++ + D+NDN P F    Y
Sbjct: 4116 AIDSATGDVRPTTALDREVLPVITLTIVAEDGGGLQGTTTAVITLFDQNDNQPEFANATY 4175

Query: 74   TGYVSEAAP----IGALVLTNTSLPLVIRAEDKDSETNALL 110
            T  V+E  P    +GA+V           A+D+DS+ NA++
Sbjct: 4176 TLTVAEGMPAWTRVGAVV-----------AQDRDSDANAII 4205



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 16/105 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGYV 77
            G + T++ LD E    Y + VTA +++    V SV V  H+LD NDN P +   ++T  +
Sbjct: 2458 GAMYTRRALDRETQDTYQVQVTAADVSATPLVTSVTVTLHVLDINDNAPVYAHGDFTSVI 2517

Query: 78   --SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
               +AAP        T + + + A D D   N     A++ G+TN
Sbjct: 2518 VLEDAAP-------GTPIGVQVAARDADLGGNGTVAYAIVAGNTN 2555



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYF 68
            A+ P  G +    PLD+E T +Y L+V   N             +V + +LD NDN P F
Sbjct: 6340 AIEPSTGAITLAAPLDFETTTLYQLTVEVDNTNTYDDPTQMDATTVTITVLDTNDNAPVF 6399

Query: 69   TQ-LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            T+  +Y   V+E   +GA+V         ++  D DS  N L+
Sbjct: 6400 TEGGSYAMSVAENEGVGAVVGR-------VQVTDADSGVNELV 6435



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 16/113 (14%)

Query: 4    PVQLFAILKPALHPP---YGVLLTKKP----LDYEATRIYNLSVTATNMA--GAKAVCSV 54
            P ++  +  P +  P   Y   +T  P    LD+EA  ++NL VTAT+     A A  +V
Sbjct: 1619 PARVVVVAVPGIAEPVTVYASNITVAPRGPGLDHEAVAVHNLMVTATDQGVRQATATLNV 1678

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             V + D +DN P F Q  Y   V+E A +G +++T       + A D D+  N
Sbjct: 1679 TVEVGDVDDNAPRFQQGVYAHTVAEDAVVGTVLVT-------VAASDPDTGIN 1724



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFT 69
            A++   G + T   LD EA    Y L+V A N+    G  +  +V VHI D NDN P F 
Sbjct: 2332 AINGTSGAITTTASLDREAAPNGYVLAVVAANLNDATGPSSAVNVTVHITDINDNPPVFE 2391

Query: 70   QLNYTGYVSEA 80
            Q +Y   V+EA
Sbjct: 2392 QQSYAFTVAEA 2402



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   +PLD E    Y L+V A +  G + +     V + I D NDN PY T    T  
Sbjct: 5245 GVISVARPLDRETQAAYELTVVAVD-GGVEELTRLVGVTITIGDVNDNPPYVTNAVRTAS 5303

Query: 77   VSEAAPIGALVLTNTS 92
            VSEA    +L+LT T+
Sbjct: 5304 VSEALAPESLILTVTA 5319



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 47/105 (44%), Gaps = 17/105 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEA-TRIYNLSVTATN--MAGAKAV---CSVIVHILDRNDNTPY 67
            A++   GV+ T   LDYE   R Y L VTA++  M   +       V V + D NDN P 
Sbjct: 2991 AINASTGVITTLTALDYEQDVRTYVLEVTASDGHMPAPRMTLLPARVTVTLTDANDNAPV 3050

Query: 68   FTQL----NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            F  L     +T  VSEAA     VL+       +   D DS  NA
Sbjct: 3051 FDNLPISGTFTAAVSEAATTATSVLS-------VEVSDADSGNNA 3088



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +     LD E  + Y   V AT+  G  +  SV V + D NDN P F Q  Y+  V+E
Sbjct: 5605 GEIKVSIALDRETVQAYRFVVVATDEDGLNSTASVHVIVDDVNDNAPAFVQGGYSATVAE 5664



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
            LD+E   I N+ V A+N AGA      AV +V++ + D ND  P F    Y   VSE A 
Sbjct: 5033 LDFETAPILNIIVLASNPAGALGAQPSAVATVLITLTDDNDEHPAFVGAPYAFEVSEGAE 5092

Query: 83   I 83
            +
Sbjct: 5093 V 5093



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            G L T   LD E    Y L V A ++   + +    ++ V + D NDN P F +  YT  
Sbjct: 5131 GTLFTAGRLDREVVDTYALVVRARDLGTEQQLFTDVTITVTVTDENDNAPVFDEEAYTAS 5190

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E+A +GA V+        +RA D D   NA +
Sbjct: 5191 VLESAALGAQVVR-------VRATDADLADNARI 5217



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYF 68
            A+    G +     LD E   +Y   V AT+ A +      A  ++ + +LD NDN P F
Sbjct: 4327 AVDAVSGEVTVAGALDREQQELYVFDVVATDNAASVDQRRSARTTISIALLDVNDNAPVF 4386

Query: 69   TQLNYTGY-VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +   +  + VSEAA  G +V         + A D D+E N+++
Sbjct: 4387 SHGEFVVFNVSEAAAGGDVVGR-------VIATDADAEENSVV 4422



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTAT-NMAGA---KAVCSVIVHILDRNDNTPYFT---Q 70
            P GV+ T  PLD E+   Y+  V AT N+ GA       +V+V +LD NDN P  T   Q
Sbjct: 3106 PAGVITTTAPLDRESKAAYSFEVVATDNVDGAMQNTVTATVLVTVLDVNDNAPMLTAASQ 3165

Query: 71   LNYTGYVSEAAPIGALVLT 89
               +  ++E+A +G+ V T
Sbjct: 3166 AATSFRIAESAAVGSEVFT 3184



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTG 75
            G +      D E    Y  ++TA +    + +     SV V I D NDNTP   Q  Y+ 
Sbjct: 4225 GEIFATAEFDRETKDAYTFTITARDPDATRFLFTDSASVTVLIDDVNDNTPQV-QAEYSA 4283

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E A +G L++T       + A D D + NA +
Sbjct: 4284 DVREDAALGTLLVT-------VAATDGDIDDNARI 4311



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            V L    LD E T  Y ++V A + A           +++VH+ D ND+ P F +  YT 
Sbjct: 4691 VRLLVSDLDRETTDTYEVTVVAEDRAADPDARQATTATLVVHVTDVNDHAPVFEKSVYTQ 4750

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E       +  +T + +V+ A D D+  NA L
Sbjct: 4751 DVRED------IAADTPV-VVVAASDDDAGLNAQL 4778



 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            +++P  GV+ T +PLD E    Y L+V A +    +     +V V + + NDN P F Q 
Sbjct: 6448 SVNPVSGVVTTLQPLDREVQAEYALTVLALDQGSPQLSTNATVTVTVGNVNDNAPQFDQA 6507

Query: 72   NYTGYVSE 79
             Y   V E
Sbjct: 6508 VYRVEVDE 6515



 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G+++    LD E+   Y ++V+A +        SV++ I D NDN P          V E
Sbjct: 6671 GLVVVAGSLDRESAGSYQVTVSARDDGDRTGFASVVITIADVNDNAPLLPPSPLDVSVRE 6730

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             A  G LV T       I A D D+  N 
Sbjct: 6731 NADAGTLVTT-------IVATDSDAGANG 6752



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 13/105 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV----IVHILDRNDNTPYFTQ 70
            L P  GVL+ +  +D E    Y L V  ++ AG+ +  SV     V ILD NDN P F  
Sbjct: 1880 LEPASGVLVVQSAVDSETYAEYRLLVRVSD-AGSPSPRSVDFNITVAILDENDNAPVF-- 1936

Query: 71   LNYTGYVSEAAPIGAL--VLTNTSLPLV---IRAEDKDSETNALL 110
            ++  G  ++ A +G +  V  NTS P     + A D D+  N  +
Sbjct: 1937 VDADGSATDGA-VGYVFNVSENTSAPAAAGRVYAPDADAGDNGAV 1980



 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 26/111 (23%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVT---ATNMAGA----------------KAVCSV 54
            A++   G L   KPLDYE    Y L++    AT +A A                +   +V
Sbjct: 3230 AINATSGRLSVAKPLDYETFVTYTLTLEVADATTLALAEGTPASPSFPPPQPTNRVALTV 3289

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
             + + D NDN P F+Q  Y   V E A +   V+        + A+D D +
Sbjct: 3290 RITVDDVNDNAPAFSQTAYAASVLENAAVDTAVVR-------VAAQDADED 3333


>gi|291404355|ref|XP_002718532.1| PREDICTED: protocadherin 15 isoform 2 [Oryctolagus cuniculus]
          Length = 1899

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 412



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1065 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDKDT 1151



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         + + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVVINIRVMDANDNTPTFPEISYDVYV 496



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 807 EENLPAGTTFLQ-------IEAKDVD 825



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 555 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 614


>gi|345328666|ref|XP_001508074.2| PREDICTED: protocadherin gamma-B7-like [Ornithorhynchus anatinus]
          Length = 836

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G ++T++ LD+E  R Y + V A +  G    C V++ ILD NDN P  T     
Sbjct: 294 LDPISGDIVTERSLDFEVARKYEVDVEARDGGGLTTQCKVVIEILDENDNAPEVT----- 348

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + S  +PI    +  T + L IR  D+DS  N 
Sbjct: 349 -FTSVFSPIPEDSVPGTMIAL-IRIRDRDSGDNG 380



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E    YN++V+A++        S  + +L  D NDN P F+Q  Y  Y
Sbjct: 401 YYKLVTDSILDREQMAEYNITVSASDRGTPPLTTSKTISLLIADVNDNPPVFSQATYLAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E    GA +         + A D+D ++NA +
Sbjct: 461 VPENNRPGASIFR-------VSASDRDLDSNARI 487


>gi|334311077|ref|XP_003339577.1| PREDICTED: protocadherin beta-3-like [Monodelphis domestica]
          Length = 795

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 10/101 (9%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           ILKP++   Y  LLT+ PLD E+   YN+++T T++   +     ++ V I D NDN P 
Sbjct: 391 ILKPSVDNFY-TLLTESPLDRESRSQYNITITVTDLGTPRLTTERNITVLISDVNDNPPA 449

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ  Y  Y+ E   I AL   +      +RA D+DS TNA
Sbjct: 450 FTQTAYAFYLQENN-IPALHFGS------VRANDRDSGTNA 483



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T++ LD+EA + Y + + AT+  G    C+V+V + D NDN P     ++T  + E
Sbjct: 298 GDIRTRRKLDFEAIKSYEVDIEATDGGGLSGKCTVVVQVTDVNDNAPELAISSFTSPIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P         +L  V++  D+DS  N 
Sbjct: 358 NSP--------ETLVAVLKIRDQDSGDNG 378



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +  +VTAT+  G+ A+ S   V V +LD NDNTP+
Sbjct: 510 GHLYILRSLDYEAIQAFQFTVTATD-GGSPALSSQALVQVVVLDENDNTPF 559



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+  K LD E      L++ A +           + V ++D NDN P F+Q  Y   
Sbjct: 190 FAELVLDKALDREMQPEVTLTLIALDGGSPPRSGAAQIRVLVVDVNDNAPVFSQAQYDVQ 249

Query: 77  VSEAAPIGALVLTNTSLPLVI 97
           + E   IG+LV T T+  L I
Sbjct: 250 IPENGAIGSLVATVTATDLDI 270


>gi|335301963|ref|XP_003359335.1| PREDICTED: protocadherin-15 [Sus scrofa]
          Length = 1538

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  +IY  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQIYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|410974957|ref|XP_003993905.1| PREDICTED: protocadherin-15 isoform 9 [Felis catus]
          Length = 1538

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1081 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1140

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1141 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|148678174|gb|EDL10121.1| mCG133388, isoform CRA_d [Mus musculus]
          Length = 748

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E    Y L V A +     A C+V + ILD NDN P  T ++++
Sbjct: 112 LNPNTGAITTNGTLDFEEKNRYTLGVEAKDGGVHTAHCNVQIEILDDNDNAPEVTFMSFS 171

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E + +G ++        +I+  DKDS  N L+
Sbjct: 172 NQVPEDSVLGTVI-------ALIKVRDKDSGQNGLV 200



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K L+ E T  YN+++TAT+ +G  ++ S   V VHI D NDN P F Q +Y  
Sbjct: 219 YYKLVIDKALNREQTPEYNVTITATD-SGKPSLSSKTCVTVHITDINDNAPVFHQASYLV 277

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E  P GA +         + A D D  +N L+
Sbjct: 278 HVAENNPPGASIAQ-------VSASDPDLGSNGLI 305



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYT 74
          Y  LL + PLD E    ++L +TA  M G      +   V + + D NDN P F+Q  Y 
Sbjct: 9  YPELLLENPLDREHQSSHHLILTA--MDGGDPPLSSTTQVWIKVTDANDNAPVFSQDTYK 66

Query: 75 GYVSEAAPIGALVLTNTS 92
            + E  P G LVL  T+
Sbjct: 67 VSLRENIPPGTLVLQVTA 84


>gi|165934069|gb|ABY74562.1| protocadherin 15 precursor (predicted) [Callithrix jacchus]
          Length = 976

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 11  MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 70

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 71  YQGYILESAPVGATISDSPNLTSPLRIVALDKDVE 105



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
           GV+    PLDYE    Y L V A ++    A            V + I D N+N P F +
Sbjct: 758 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNNPPVFQK 817

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y G VSE A +   VL        ++A DKD+
Sbjct: 818 KFYIGGVSEDARMFTSVLR-------VKATDKDT 844



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 138 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 189



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 440 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTITLAIKVLDIDDNSPVFTNSTYTVLV 499

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 500 EENLPAGTTFLQ-------IEAKDVD 518



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 537 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 596

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 597 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 625


>gi|345791459|ref|XP_003433494.1| PREDICTED: protocadherin-15 isoform 2 [Canis lupus familiaris]
          Length = 1797

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1099 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1159 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1185



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 530



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHDSYYATVNELTPVGTTIFTGFS 176



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDSYQLVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 841 EENLPAGTTFLQ-------IEAKDVDLGAN 863



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 589 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 648


>gi|410974943|ref|XP_003993898.1| PREDICTED: protocadherin-15 isoform 2 [Felis catus]
          Length = 1793

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 41.2 bits (95), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1093 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1152

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1153 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1185



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 530



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 841 EENLPAGTTFLQ-------IEAKDVDLGAN 863



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 589 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 648


>gi|241758144|ref|XP_002401744.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215508485|gb|EEC17939.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 2750

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 10/103 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQ 70
           ++ P  GV+ T   LD E   ++ L V A + A    + A  ++ V++LD ND+ P F Q
Sbjct: 267 SIDPLSGVVTTTTVLDREFIEVHYLRVVAVDGATQPPSTATSTLQVNVLDENDHAPTFEQ 326

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             Y   + E+ P G  VLT       +RA D+D+ +NA +D S
Sbjct: 327 ATYEASIRESVPTGFTVLT-------VRATDQDTGSNANVDYS 362



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 16  HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           H    V+   +PLDY+  R + L VTAT+  G     +V +++ D N + P F +  YT 
Sbjct: 696 HNRQAVVSVAQPLDYKLERRFVLVVTATDSGGRSDSATVYLNVSDANTHRPTFERTPYTA 755

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E  P+G  V       LV+ A D D   NAL+
Sbjct: 756 SIPEDVPVGTTV-------LVVEARDGDVGRNALV 783



 Score = 45.4 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G L+T +PLD E    Y L V A +          +V + I D NDNTP F    
Sbjct: 796 MDPSSGSLVTARPLDRERVGGYTLVVAAQDGGNPPLSDTTNVELEIADVNDNTPVFPTAG 855

Query: 73  YTGYVSEAAPIGALVLTNTSL 93
           YT  VSE A +G  V   ++L
Sbjct: 856 YTSTVSEDALVGTSVAHVSAL 876



 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           G++ T+  LD E T  Y L V AT+         A  +V + +LD NDN P F++ +Y+ 
Sbjct: 380 GIITTRSSLDRELTSFYALVVQATDSGPVTDRKSASATVQITVLDENDNYPQFSERSYSV 439

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            VSE      +   N      IRA D D   NA L
Sbjct: 440 KVSE-----DVNWLNHPEVARIRATDSDQGANAAL 469



 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T + LD E +  +N  V A +       A  S+++ + D NDN P F    Y   V
Sbjct: 595 GWVSTTRQLDREESASFNFQVVARDHGTPSRSATASILLRVQDVNDNDPVFEPRTYEATV 654

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
           SEA P G  V++ T       A D+D  +
Sbjct: 655 SEADPPGTPVVSVT-------ASDRDEHS 676



 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +    PLDYE+ R Y L V   +           ++V++LD NDN P F    +   V
Sbjct: 489 GSVTVLSPLDYESARSYRLVVRVQDGGTPSRSNTTQLLVNVLDINDNDPKFYTSLFHETV 548

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P+G  ++        ++A D D   NA
Sbjct: 549 PENVPVGHSIVR-------VQAYDADDGANA 572


>gi|334311075|ref|XP_001377503.2| PREDICTED: protocadherin beta-3-like [Monodelphis domestica]
          Length = 840

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 10/101 (9%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           ILKP++   Y  LLT+ PLD E+   YN+++T T++   +     ++ V I D NDN P 
Sbjct: 436 ILKPSVDNFY-TLLTESPLDRESRSQYNITITVTDLGTPRLTTERNITVLISDVNDNPPA 494

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ  Y  Y+ E   I AL   +      +RA D+DS TNA
Sbjct: 495 FTQTAYAFYLQENN-IPALHFGS------VRANDRDSGTNA 528



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T++ LD+EA + Y + + AT+  G    C+V+V + D NDN P     ++T  + E
Sbjct: 343 GDIRTRRKLDFEAIKSYEVDIEATDGGGLSGKCTVVVQVTDVNDNAPELAISSFTSPIPE 402

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P         ++  V++  D+DS  N 
Sbjct: 403 NSP--------ETVVAVLKIRDQDSGDNG 423



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +  +VTAT+  G+ A+ S   V V +LD NDNTP+
Sbjct: 555 GHLYILRSLDYEAIQAFQFTVTATD-GGSPALSSQALVQVVVLDENDNTPF 604



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+  K LD E      L++ A +           + V ++D NDN P F+Q  Y   
Sbjct: 235 FAELVLDKALDREMQPEVTLTLIALDGGSPPRSGAAQIRVLVVDVNDNAPVFSQAQYDVQ 294

Query: 77  VSEAAPIGALVLTNTSLPLVI 97
           + E   IG+LV T T+  L I
Sbjct: 295 IPENGAIGSLVATVTATDLDI 315


>gi|148747543|ref|NP_291052.3| protocadherin gamma-B1 precursor [Mus musculus]
 gi|13876346|gb|AAK26093.1| protocadherin gamma B1 [Mus musculus]
          Length = 918

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E    Y L V A +     A C+V + ILD NDN P  T ++++
Sbjct: 282 LNPNTGAITTNGTLDFEEKNRYTLGVEAKDGGVHTAHCNVQIEILDDNDNAPEVTFMSFS 341

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E + +G ++        +I+  DKDS  N L+
Sbjct: 342 NQVPEDSVLGTVI-------ALIKVRDKDSGQNGLV 370



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K L+ E T  YN+++TAT+ +G  ++ S   V VHI D NDN P F Q +Y  
Sbjct: 389 YYKLVIDKALNREQTPEYNVTITATD-SGKPSLSSKTCVTVHITDINDNAPVFHQASYLV 447

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E  P GA +         + A D D  +N L+
Sbjct: 448 HVAENNPPGASIAQ-------VSASDPDLGSNGLI 475



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  LL + PLD E    ++L +TA  M G      +   V + + D NDN P F+Q  Y 
Sbjct: 179 YPELLLETPLDREHQSSHHLILTA--MDGGDPPLSSTTQVWIKVTDANDNAPVFSQDTYK 236

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E  P G LVL  T+
Sbjct: 237 VSLRENIPPGTLVLQVTA 254


>gi|441600758|ref|XP_004087637.1| PREDICTED: protocadherin-15 isoform 1 [Nomascus leucogenys]
          Length = 1674

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            G++    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GIIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPLAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSVTYAIENG 655



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|32451789|gb|AAH54741.1| Protocadherin gamma subfamily B, 1 [Mus musculus]
          Length = 918

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E    Y L V A +     A C+V + ILD NDN P  T ++++
Sbjct: 282 LNPNTGAITTNGTLDFEEKNRYTLGVEAKDGGVHTAHCNVQIEILDDNDNAPEVTFMSFS 341

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E + +G ++        +I+  DKDS  N L+
Sbjct: 342 NQVPEDSVLGTVI-------ALIKVRDKDSGQNGLV 370



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K L+ E T  YN+++TAT+ +G  ++ S   V VHI D NDN P F Q +Y  
Sbjct: 389 YYKLVIDKALNREQTPEYNVTITATD-SGKPSLSSKTCVTVHITDINDNAPVFHQASYLV 447

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E  P GA +         + A D D  +N L+
Sbjct: 448 HVAENNPPGASIAQ-------VSASDPDLGSNGLI 475



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  LL + PLD E    ++L +TA  M G      +   V + + D NDN P F+Q  Y 
Sbjct: 179 YPELLLETPLDREHQSSHHLILTA--MDGGDPPLSSTTQVWIKVTDANDNAPVFSQDTYK 236

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E  P G LVL  T+
Sbjct: 237 VSLRENIPPGTLVLQVTA 254


>gi|410974955|ref|XP_003993904.1| PREDICTED: protocadherin-15 isoform 8 [Felis catus]
          Length = 1788

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1088 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1147

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1148 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1180



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 525



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 836 EENLPAGTTFLQ-------IEAKDVDLGAN 858



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 584 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 643


>gi|326916835|ref|XP_003204710.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-16-like [Meleagris
            gallopavo]
          Length = 3001

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
            L P  GVL T + LD E    Y+L+V   +       A  SV V +LD NDN P F Q +
Sbjct: 1493 LDPVSGVLSTARALDREQVAFYSLTVVVQDHGTPPRSATMSVNVQVLDLNDNAPGFAQAS 1552

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   V E  P+G+LVL        + A+D D  TN 
Sbjct: 1553 YVVEVPEDLPVGSLVLQ-------LEAKDPDEGTNG 1581



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+  +PLD+EA  +YNL+V A +  +        V++ + D NDN P F +  Y   V
Sbjct: 2248 GALVLVEPLDFEAIPVYNLTVAALDRGLPQRSTTVPVLITVQDVNDNPPVFARAEYRTAV 2307

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE+ P G  +L        + A D DS
Sbjct: 2308 SESTPPGTELLR-------VTAHDADS 2327



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 20  GVLLTKKPLDY-EATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G L T +PLD  E T  Y+ ++TA +  G  ++  V V + D NDN P F  L Y   +S
Sbjct: 613 GHLCTAQPLDRDEGTSAYDFTITAVDGGGLNSMVYVKVFLEDINDNRPVFYPLEYAASIS 672

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKD 103
             +  G  VL        + A DKD
Sbjct: 673 TQSMPGTAVLR-------VTAHDKD 690



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNY 73
            +H   G L   +PLD E   ++ L V A ++ G   A+  V + + D NDN PYF     
Sbjct: 2348 IHESTGALCLARPLDRETQALHALVVQAMDVPGGHFALVPVAIEVKDVNDNKPYFPVEVL 2407

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +  + E  P G LV T       +RA D D+
Sbjct: 2408 SASMRENLPPGTLVTT-------LRAIDTDT 2431



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
           A+ P  G++ T  PLDYE      L+V AT+  G  A+ S   V+V + D NDN P F  
Sbjct: 499 AIDPATGIITTAAPLDYEKDPQPQLTVLATDR-GTPALSSSAVVLVALQDVNDNEPVFRS 557

Query: 71  LNYTGYVSEAAPIGALVLTNTS 92
             Y   + E  P+G   L  T+
Sbjct: 558 NFYNVSLKENTPVGTCFLQVTA 579



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y+L VTAT+      +A  + ++ ++D NDN P F Q  Y   + E    G+
Sbjct: 406 LDREERDSYDLRVTATDSGTPPLRAESTFVLQVIDINDNPPLFDQQEYKQSIPEVVYPGS 465

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            VL        + A DKD   N 
Sbjct: 466 FVLQ-------VTARDKDQGPNG 481



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 15/105 (14%)

Query: 5    VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRND 63
            V  F++L+       G +    PLDYE    Y+L++ A++     +A  +VIV   D ND
Sbjct: 2021 VGTFSVLRYG-----GRIALTGPLDYEQRSHYSLTLRASDSRHETEANLTVIVE--DVND 2073

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P F+Q  Y   + E  P G+++LT       + A D DS +N 
Sbjct: 2074 NAPAFSQAFYQVTLPEHTPAGSILLT-------MSATDMDSGSNG 2111



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHI 58
            S P Q F I         GV+   K LDYE  +++ L V A + A    V +  V +H+
Sbjct: 274 QSDPDQYFTIDSRT-----GVIKLNKGLDYEVRKVHELVVQARDRAVHPEVTTAFVTIHV 328

Query: 59  LDRNDNTP----YFTQLNYTGYVSEAAPIGALV 87
            D NDN P     F   + +  +SE A  G  V
Sbjct: 329 RDYNDNQPTMTIIFLSEDGSPQISEGAQPGQYV 361



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQL 71
            +H   G L TK  LD E    Y L V   +  GA    A  ++ V +LD NDN P F  +
Sbjct: 1131 IHTQTGELSTKHSLDREQQSSYQLLVIVQD-GGAPPRSATGTIYVTVLDENDNAPAFLHI 1189

Query: 72   ----NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  T  V E  P G LV +       ++A+D D   N  +
Sbjct: 1190 AAGQELTVQVLEEKPSGLLVAS-------LQAKDPDEGENGTI 1225



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 11/81 (13%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            L YEA+  Y L++ A + +G   + S   ++VH+   +DN P F  L Y   V E  P+ 
Sbjct: 932  LQYEASAAYRLAIVARD-SGVPQLSSTFTLLVHVQAEHDNGPIFDTLTYRVEVREGVPVS 990

Query: 85   ALVLTNTSLPLVIRAEDKDSE 105
               L        +RA  +D+E
Sbjct: 991  TRFLQ-------VRALARDAE 1004



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G L   + L+ E    +NL+V A +    +   + ++ IL  D ND  P F +  
Sbjct: 1287 VRPVLGALSVVRALNREEVVQHNLTVVAADHGFPRRSATQLLSILVLDVNDEAPTFEKPE 1346

Query: 73   YTGYVSEAAPIGALVL 88
            Y  +++E  P G+ VL
Sbjct: 1347 YEAHITENLPAGSPVL 1362



 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 11/105 (10%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATR-IYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            L  A+ P  G L T +P++++A +    L V A +       +  +V + +LD ND++P 
Sbjct: 2122 LDVAIDPSNGTLFTIRPVEFDANQPTLELVVEARDHGSPSLSSWATVQLQVLDVNDHSPI 2181

Query: 68   FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD-SETNALLD 111
            F   +Y   V E    G  VLT       + A D D S  NA  D
Sbjct: 2182 FQVPHYNASVPEDLRPGTTVLT-------LDAGDADLSRENAGFD 2219


>gi|242004578|ref|XP_002423159.1| class D atypical G-protein coupled receptor GPRstn1, putative
           [Pediculus humanus corporis]
 gi|212506116|gb|EEB10421.1| class D atypical G-protein coupled receptor GPRstn1, putative
           [Pediculus humanus corporis]
          Length = 3235

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++    PLDY   + Y L+V+AT+  G   + +V V++ D N+ +P F    YT  V E
Sbjct: 829 GLVAIAHPLDYRQDKRYILTVSATDTGGRSDIATVYVNVTDANNYSPVFENAPYTAQVFE 888

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AP+G  V       LV++A D D   NA +
Sbjct: 889 DAPVGTTV-------LVVQASDGDVGQNAQI 912



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPY 67
            F++   +++P  G ++T K LD E    Y L+VTA +  G K    + V   D NDN+P 
Sbjct: 922  FSVDSFSINPQTGAVVTTKLLDRETVSSYLLTVTARD--GGKNYVEITVK--DVNDNSPV 977

Query: 68   FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            F+   Y+G +SE A +G  VL        ++A D DS  N  +
Sbjct: 978  FSSATYSGVISEDALVGTSVLQ-------VQATDIDSGLNGRI 1013



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T K LD E+   Y+L V A +       +V +V + I D ND+ P F    
Sbjct: 1032 IDPTLGVIRTSKNLDRESVPFYSLKVYAIDRGTPSLYSVVNVNIKIEDVNDSPPVFESEK 1091

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               Y+ E +PIG+ V         +RA+D D   NA++
Sbjct: 1092 IVFYIPENSPIGSTVGE-------VRAKDPDEGVNAII 1122



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T KPLD E T  Y   V   +       A  +VI+++ D NDN P F    Y   V
Sbjct: 724 GWIQTTKPLDREMTSKYQFQVIVEDGGEPPKSATANVIINVQDVNDNDPVFNPKIYEVVV 783

Query: 78  SEAAPIGALVLTNTS 92
           SE  P G LV + T+
Sbjct: 784 SEQDPPGTLVASVTA 798



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 13/97 (13%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM--AGAKAVCSVI--VHILDRNDNTPYFTQLNYTG 75
           GV+ T+K LD E T  Y L+V A++    G +   + +  V +LD NDN P FT+  YT 
Sbjct: 504 GVVTTRKALDREVTANYALTVIASDSPPVGERKTATALLNVRVLDDNDNYPQFTERTYTV 563

Query: 76  YVSE--AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E   A +  ++ T       ++A D D   NA +
Sbjct: 564 SVPEDMDASLSPVIAT-------VKATDADEGKNAAI 593



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G ++  KPLDYE  + Y L + A +           ++V++ D NDN P F    +   V
Sbjct: 613 GDVILAKPLDYEVLKSYRLVIRAQDGGNPSKSNTTQLLVNVKDVNDNEPRFYSTLFQESV 672

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E+ P+G  ++        ++A D D   N  L
Sbjct: 673 LESVPVGYSIVK-------VQAYDSDEGANVAL 698



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++ T   LD E   ++   V A +          ++ ++++D ND+ P F   +Y   V
Sbjct: 401 GMVTTSVKLDRELFDLHYFRVVAADDSFPPRSGTTTLQINVIDANDHAPVFESDSYEAAV 460

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E   IG +V+T       +RA D+D   NA
Sbjct: 461 REGVAIGTIVIT-------VRATDQDINKNA 484


>gi|195026491|ref|XP_001986268.1| GH21267 [Drosophila grimshawi]
 gi|193902268|gb|EDW01135.1| GH21267 [Drosophila grimshawi]
          Length = 3596

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+VTAT+  G     +V ++I D N+  P F    Y+  V E
Sbjct: 851 GLITIAQPLDYKQEKRFLLTVTATDSGGRSDTSTVHINITDANNYAPIFENAPYSASVFE 910

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            APIG  V       LV+ A D D   NA +  S N
Sbjct: 911 DAPIGTTV-------LVVSATDSDVGINAQITYSLN 939



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+ T+  LD E +  Y++ VTA++MA A+     A  SV+V ILD NDN P F++  YT
Sbjct: 532 GVISTRSSLDRETSDSYHMLVTASDMAAAQSERKTATASVVVKILDDNDNYPQFSERTYT 591

Query: 75  GYVSE 79
             V E
Sbjct: 592 VQVPE 596



 Score = 45.4 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G + T K LD E+  IY+L+  A +        +V V I   D ND+ P F    
Sbjct: 1060 IDPTSGTIRTNKGLDRESVAIYHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDK 1119

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T YV E +P+G++V         I A D D   NA++
Sbjct: 1120 ITLYVPENSPVGSVVGE-------IHAHDPDEGVNAVV 1150



 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KPLDYE+ R Y L + A +           ++V+++D NDN P F    +   V E  P+
Sbjct: 647 KPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPV 706

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G  ++        ++A D D   NA
Sbjct: 707 GYNIIR-------VQAYDSDEGANA 724



 Score = 41.2 bits (95), Expect = 0.080,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ T   LD E   ++   V AT+          ++ V++LD ND++P F    +   +
Sbjct: 418 GVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASI 477

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E A +G+ V+T       +RA D+D   NA ++
Sbjct: 478 REGATVGSTVIT-------LRATDQDIGKNAEIE 504



 Score = 40.8 bits (94), Expect = 0.095,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A+ P  G + T KPLD E    +   V A +  +    A  SV++ + D NDN P F   
Sbjct: 740 AVDPRTGWVQTIKPLDREEQNRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPTFNPK 799

Query: 72  NYTGYVSEAAPIGALVLTNTS 92
            Y   V E  P G  V T T+
Sbjct: 800 YYEANVGEDQPPGTPVTTVTA 820



 Score = 38.1 bits (87), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T  PLD E T  Y L+VTA +           V + + D NDN P F    Y   +
Sbjct: 959  GAIITSAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEISVTDVNDNAPAFKNPLYQSSI 1018

Query: 78   SEAAPIGALVL 88
             E A +G  V+
Sbjct: 1019 LEDALVGTSVI 1029


>gi|410974953|ref|XP_003993903.1| PREDICTED: protocadherin-15 isoform 7 [Felis catus]
          Length = 1786

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
             +H   GV+    PLDYE    Y L V A ++    A            V + I D ND+
Sbjct: 1088 GIHNITGVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDH 1147

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P F +  Y G VSE A +   VL        ++A DKD+
Sbjct: 1148 PPVFQKKFYIGGVSEDARMFTSVLR-------VKATDKDT 1180



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 525



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPMFKHDSYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVIV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 836 EENLPAGTTFLQ-------IEAKDVDLGAN 858



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 584 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 643


>gi|449499705|ref|XP_004186240.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4 [Taeniopygia
            guttata]
          Length = 5033

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L   KPLD+E  + + L VTAT+         CSV V+++D NDN+P F+  
Sbjct: 3186 AINTTTGTLTLAKPLDFELDQKHELVVTATDGGWVSRTGYCSVTVNVIDVNDNSPAFSPE 3245

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V       + + A D DS +NA++
Sbjct: 3246 EYFPTVLENAPSGTTV-------ICLNATDADSGSNAVI 3277



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P+F   
Sbjct: 1410 SISPNTGSIFLAKKLDFETQYLYKLNITAKDQGRPLQSSTMSVVIHVRDFNDNPPHFPPG 1469

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  P+G+ V++       + A D D++ N  L
Sbjct: 1470 DIFKSIVENVPVGSSVIS-------VTAHDPDADINGQL 1501



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYF 68
           L P+    +  L+++  LD EAT  Y L V   +      +    V V I D NDN P F
Sbjct: 187 LNPSGEGAFLHLVSRGGLDREATPTYQLLVQVEDKGEPRRRGYLQVNVTIQDINDNPPIF 246

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +Q  Y   V E AP+GA VL        + A D D  TNA
Sbjct: 247 SQTLYQARVPEDAPVGASVLQ-------VTAADADEGTNA 279



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           P Q+F      L P  G L T   LD E    ++L V AT++      +V  V V ILD 
Sbjct: 674 PRQMFR-----LDPVSGKLSTISQLDREEQSHFSLQVLATDLGSPPLSSVARVNVTILDV 728

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLT 89
           NDN+P F  + Y  ++ E  P G  V T
Sbjct: 729 NDNSPVFYPVQYFAHIQENEPAGTYVTT 756



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 39/77 (50%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  +ILD NDN P F   + +
Sbjct: 1937 LNPVTGVFNLTRALDYEAQQYYILTVRAEDGGGQFTAIRVYFNILDVNDNPPVFGMASCS 1996

Query: 75   GYVSEAAPIGALVLTNT 91
              + E  P G+ +L  T
Sbjct: 1997 TSLMENLPPGSAILNFT 2013



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ A++           VI+++LD NDN P F+Q+ ++  V
Sbjct: 2771 GEIRSIRPLDREKLSQYTLTIKASDKGIPLQSTTVKVIINVLDENDNAPRFSQI-FSASV 2829

Query: 78   SEAAPIGALV 87
             E AP+G  V
Sbjct: 2830 PENAPLGFTV 2839



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C + + +LD NDN+P F +      V E   +G 
Sbjct: 1319 LDYEATASYSLVIQAVDSGAVSLSSTCMLSIDVLDENDNSPSFPKSTLLVDVLENMRVGE 1378

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1379 LVSS-------VTATDSDSGDNADL 1396



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
           +H   GV+ TK  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  
Sbjct: 784 VHGQTGVITTKIALDREEKTAYQLQIVATDGGHLQSQNQAIVTITVLDTQDNPPVFSQGT 843

Query: 73  YTGYVSEAAPIGALVLT 89
           Y+  V E   +G  V T
Sbjct: 844 YSFVVFENVALGYHVGT 860



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL  +KPLD E+   Y+L V   +MA   A        V + +LD ND+ P F     T
Sbjct: 2044 GVLSIRKPLDRESQSFYSLVVQVHDMAPLPASRYTSTAQVSIILLDVNDSPPSFISPKLT 2103

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             YV E  PI  +V          +A D DS  N+ ++
Sbjct: 2104 -YVPENTPIDTVVFK-------AQATDPDSGPNSYIE 2132



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  GV+  ++ LDYE  + Y+L+V AT+            ++ +LD NDN P     Y
Sbjct: 304 VDPESGVIRIRERLDYEVRQQYSLTVQATDRGVPALSGRAEALIRLLDVNDNEPRVKFRY 363

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A  G +V
Sbjct: 364 FPATSRFASVDENAAPGTVV 383



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF+I     +   G +    PLD  A   Y + + A++M   +   + I  V + D
Sbjct: 981  NPKGLFSI-----NEQTGAISLTGPLDINAGS-YQVEILASDMGVPQLSSAFILTVSVHD 1034

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN P F QL+Y   + E+ P+ +           ++A DKDS  N 
Sbjct: 1035 VNDNPPVFDQLSYEITILESEPVNSRFFK-------VQASDKDSGVNG 1075



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD EA   Y L VTA +  G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2360 GELRLVQSLDREAKEQYLLLVTAAD-TGSPALTGTGTIAVTVDDVNDNVPTFAFNMYFAT 2418

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E AP G  +       L++ + D D+ TNA++
Sbjct: 2419 VPEDAPTGTDI-------LLVNSSDADASTNAVI 2445



 Score = 37.7 bits (86), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NY  
Sbjct: 1094 PDGQLYIKSELDRELQERYVLLVVASDRAVEPLNATVNVTVILEDVNDNRPLFNSTNYVF 1153

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            Y  E    G+ V         I A DKD
Sbjct: 1154 YFEEEQRGGSYVGK-------INAVDKD 1174



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD EA   Y L+V AT+        S  V+V +LD NDN P F Q  Y   V+E      
Sbjct: 2158 LDREAVANYTLTVVATDKGQPSLSSSTDVVVIVLDINDNNPLFAQKLYKVEVAEN----- 2212

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T L  V+ A D D  TN     A++ G  N
Sbjct: 2213 -TLTGTDLIQVL-AADGDEGTNGQVRYAIVSGDAN 2245



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G +   +PL+ E T  Y + V+A + +G      V + + D NDN P FT+ +Y 
Sbjct: 2868 INPSTGDITISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVSDVNDNAPRFTKPSYY 2926

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG  V         + A D D  +N 
Sbjct: 2927 LECPELPGIGLKVTQ-------VSATDPDEGSNG 2953



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T+  LDYE  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3291 IDPNTGTITTQGFLDYETKQSYHLTVKAFNVPDEERCSFATVNIQLEGTNEYVPRFVSKL 3350

Query: 73   YTGYVSEAAPIGALV 87
            Y   VSEAA  G +V
Sbjct: 3351 YYFEVSEAASKGTVV 3365



 Score = 34.3 bits (77), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   +YNLSV A +     A    S++V + D NDN P  +  
Sbjct: 3502 SINPQTGQVTVTAELDRETLPVYNLSVLAIDSGTPSATGSASLVVTLEDINDNGPTLS-- 3559

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3560 TSQGEVLENNRAGTLVMT 3577


>gi|431905037|gb|ELK10094.1| Protocadherin-15 [Pteropus alecto]
          Length = 1134

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 232 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 291

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 292 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 326



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 979  GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1038

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1039 KFYIGGVSEDARMFASVLR-------VKATDKDT 1065



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 359 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 410



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49 KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
          K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 15 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 63



 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 661 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTITLAIKVLDIDDNSPVFTNSTYTVVV 720

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 721 EENLPAGTTFLQ-------IEAKDVD 739



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 469 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 528

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 529 N-------LQATDREGDSITYAIENG 547



 Score = 34.3 bits (77), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYE+      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 758 ALHPFTGELSLLRSLDYESFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 817

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 818 FSKRIYKGMVAPDAVKGTPITT-------VYAEDSD 846


>gi|395817810|ref|XP_003782341.1| PREDICTED: protocadherin gamma-A1 [Otolemur garnettii]
          Length = 839

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  + Y++ V A + AG  A   V+V++LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKFYSMEVQAQDGAGLMARAKVLVNVLDINDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G+++        VI  +D+DS  N 
Sbjct: 359 NFPPGSII-------AVISVQDEDSGDNG 380



 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E T +YN++VTAT+           + +L  D NDN P F + +Y+ Y
Sbjct: 401 YYRLVTERTLDRELTSVYNITVTATDRGTPTLSSETHISLLVTDINDNPPIFHEDSYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA + +       +RA D DS  NA
Sbjct: 461 IPENNPRGASIFS-------VRAHDSDSNENA 485



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 9/79 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           ++ + PLD E   +++L++TA++      +G   +C   V ++D NDN P FTQ  Y   
Sbjct: 194 MVLQNPLDREEEAVHHLTLTASDGGDPVRSGTLRIC---VQVVDANDNPPAFTQAQYHIS 250

Query: 77  VSEAAPIGA-LVLTNTSLP 94
           V E  P+G  LV+ N + P
Sbjct: 251 VLENVPLGTHLVMVNATDP 269


>gi|148678196|gb|EDL10143.1| mCG133388, isoform CRA_z [Mus musculus]
          Length = 932

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            L P  G + T   LDYE +R Y L V A +  G +    V++ ILD NDN P     + 
Sbjct: 293 CLDPFTGEISTSGTLDYENSRFYELDVEARDQPGLQDRAKVLITILDMNDNAPEVVVTSG 352

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +  ++E AP G ++        + +  DKDSE N L+
Sbjct: 353 SRAIAENAPPGTII-------ALFQVYDKDSERNGLV 382



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLN 72
           P Y  L+ +  LD E   +++L + A  M G   V      ++V ++D NDN P FTQ  
Sbjct: 189 PKYPELVLEHSLDREEEAVHHLVLVA--MDGGDPVRTGMARILVTVVDVNDNAPVFTQPI 246

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   V E  P+G  VLT       + A D+D   +A
Sbjct: 247 YRVSVPENLPVGTRVLT-------VNATDQDEGVHA 275



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E    YN++VTAT+         + +   + D NDN P F++ +Y+ Y
Sbjct: 401 YFRLMTNTELDREQVSSYNITVTATDRGTPPLSTKIFISLDVADINDNPPVFSRSSYSVY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           VSE  P G  + +       + A D DSE NA
Sbjct: 461 VSENNPKGVSIFS-------LNAVDPDSEENA 485


>gi|441600764|ref|XP_004087639.1| PREDICTED: protocadherin-15 isoform 3 [Nomascus leucogenys]
          Length = 1681

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 523



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            G++    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1092 GIIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1178



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 834 EENLPAGTTILQ-------IEAKDVD 852



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 582 RTYALTVQAADNAPLAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 641

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 642 N-------LQATDREGDSVTYAIENG 660



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|403255752|ref|XP_003920575.1| PREDICTED: protocadherin gamma-B1 [Saimiri boliviensis boliviensis]
          Length = 812

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y L V A +     A C+V + I+D NDNTP  T ++++
Sbjct: 292 LNPNTGDITTNGTLDFEETNRYVLGVEAKDGGVHTAHCNVQIEIVDENDNTPEVTLMSFS 351

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 352 NQIPEDSNLGTVI-------ALIKVRDKDSGQNGMV 380



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    + L +TA  M G          + + + D NDN P F+Q  Y 
Sbjct: 189 YPELLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTQINIQVTDANDNAPVFSQDVYR 246

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 247 VSLQENVPWGTSVLR-------VLATDQDEGINA 273



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F + +Y  +
Sbjct: 399 YYKLVICGALNREQTADYNVTIIATDKGKPSLSSRTSITLHISDINDNAPVFHRASYVVH 458

Query: 77  VSEAAPIGALV 87
           V+E  P GA +
Sbjct: 459 VAENNPPGASI 469


>gi|380028708|ref|XP_003698032.1| PREDICTED: LOW QUALITY PROTEIN: cadherin-related tumor
           suppressor-like [Apis florea]
          Length = 4483

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L T   LD E    Y+L+V A +      +  ++V++  LD NDN P F Q +Y   ++E
Sbjct: 229 LETTGKLDREQVEFYSLNVCARDRGQPPRLGYLLVNVTVLDVNDNPPIFQQSDYVVALNE 288

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +APIG  VLT       +RA DKDSE N+ L
Sbjct: 289 SAPIGTKVLT-------VRATDKDSEDNSKL 312



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           + V+     LD E    YNL+V AT+       A   +++H+ D ND+ P F Q  Y+  
Sbjct: 454 FDVVRVNGGLDREEIPKYNLTVVATDKGTPPRSATAYLVIHVNDVNDHEPVFQQSEYSAV 513

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +SE +PIG+ V +       I A D DS  NA +
Sbjct: 514 LSELSPIGSFVAS-------ISATDADSGLNARI 540



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G + T K LD E   +Y+L++ A +        +  VHI  +D NDN P F    
Sbjct: 2957 VDPQTGDIETAKQLDRETIPVYDLTIGAIDTGSPPQTGTAAVHIELMDINDNGPIFDPPE 3016

Query: 73   YTGYVSEAAPIGALVLT 89
              GYV+E  P G +++T
Sbjct: 3017 VVGYVNENEPAGTIIMT 3033



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            +H   G +   +PLDY+  + Y L++TAT++     +AV  + V++ D NDN P F Q  
Sbjct: 2639 VHSITGAVTILEPLDYDLVQEYKLNITATDLGFEAKQAVAILTVNVSDINDNPPTFNQSV 2698

Query: 73   YTGYVSEAAPIGALV 87
            Y  Y+ E +P  + V
Sbjct: 2699 YEAYLPENSPPDSFV 2713



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G + T  PLD E T +Y+L++ A + +  +   S +   + + D NDN P F+  
Sbjct: 1903 VDPETGEVFTVVPLDREQTSVYHLTLVAQDSSPTEPQASAVNLTIFVKDVNDNAPRFSSP 1962

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT YV  A   G  V    ++      +D D E + ++
Sbjct: 1963 RYTAYVPGATKSGDFVFGAKAV------DDDDGENSRIV 1995



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L V A +          +V+V +LD+NDN P FT+L ++  V
Sbjct: 2221 GEISTNAKLDREEIASYELIVEARDEGQPSLTGTATVLVTVLDKNDNPPQFTRL-FSVNV 2279

Query: 78   SEAAPIGALVLTNTSLPLVI 97
            +E A IG  V+  TS  L I
Sbjct: 2280 TENAEIGTFVIRITSSDLDI 2299



 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L VTAT+         V V  HI+D NDN P FT  ++  
Sbjct: 1060 PDGQLYVKNVLDREEQDYYALEVTATDQGSPSRSSVVPVVVHIIDENDNAPEFTNSSFIL 1119

Query: 76   YVSEAAP----IGALVLTN 90
            ++ E  P    +G L+ T+
Sbjct: 1120 HLRENEPPDTFVGKLLATD 1138



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P  G+L     LD E    Y L VTA +       +  +V V +LD+NDN+P F    Y+
Sbjct: 1585 PVDGLLRVSGSLDRELRSNYTLEVTAKDRGEPPRSSSTTVTVTVLDKNDNSPVFDPRQYS 1644

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V+E A IGA VL        + A D+D   N 
Sbjct: 1645 ATVAENASIGASVLQ-------VSAMDRDEGANG 1671



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
            +L+P  GV      LDYE  + Y L V AT+  G  A+ S +    +++D NDN P F  
Sbjct: 1373 SLNPSTGVFTLTASLDYEQVQHYILVVQATD-GGIPALSSTVTVYCNVVDLNDNAPIF-- 1429

Query: 71   LNYTGYVSEAAPIGALVLTNTSLP---LVIRAEDKDSETNA 108
                    EA P    ++ NT++    L + A+D DS  N 
Sbjct: 1430 --------EAGPHAVDIVENTTIGTPILSVTAQDLDSGDNG 1462



 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            G++   + LD E      L+V   N  G +        VIV I D ND  P F Q  Y  
Sbjct: 2855 GIIRVSRRLDRETQNRVVLTVMTKNGGGIRGNDTDEAQVIVSIQDGND-PPEFLQSAYDA 2913

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             VSE A  G  VLT       +RA DKD
Sbjct: 2914 TVSEGAVHGTRVLT-------VRAVDKD 2934



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 19/114 (16%)

Query: 8    FAILKPA----LHPPYGVLLTKKPLDYEATR-------IYNLSVTATNMAGA--KAVCSV 54
            +++L+P+    + P  G + +KK L Y+ T        +Y+L+V AT+       +  S+
Sbjct: 2409 YSLLQPSDLFTVDPATGDVFSKKTLKYKHTHRPSSPENLYSLTVVATDNGKPPLSSKTSI 2468

Query: 55   IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V+++D N+N P F Q +Y   V E   +G  V+      LV R +D D   NA
Sbjct: 2469 HVNVVDANNNAPRFEQRSYLYPVPENYGVGKRVVQ-----LVAR-DDADFGVNA 2516



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            P G L T+K LD E   +YNL ++AT+          +   V V +LD ND +P F    
Sbjct: 1481 PNGTLFTRKLLDREQKPLYNLVLSATDSPPPPGLPLSSTVQVTVVLLDVNDMSPEFISPT 1540

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
                + E AP   +V       + I+A D+D   N  ++
Sbjct: 1541 KISII-ENAPSNTVV-------MAIKAVDRDEGRNGYVE 1571



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L TK  LD E    Y + V A +       +  +VI+ + D NDN+P F    Y   V
Sbjct: 668 GQLTTKVHLDRETIAEYRILVIAKDQGTPPQSSTATVILTLKDVNDNSPVFYPWRYLMAV 727

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E AP G      TS+  V+ A D D+  NA
Sbjct: 728 PEDAPPG------TSVGKVM-ATDADARENA 751



 Score = 34.3 bits (77), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 39   SVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            +VT   +   +    V+++I D NDN P F +L Y   V+E A IG  +L
Sbjct: 1192 TVTDNGVNRLRDRVKVVIYITDVNDNIPQFQRLPYRVQVNEGAAIGTQLL 1241


>gi|328791786|ref|XP_393497.4| PREDICTED: cadherin-related tumor suppressor [Apis mellifera]
          Length = 4958

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L T   LD E    Y+L+V A +      +  ++V++  LD NDN P F Q +Y   ++E
Sbjct: 164 LETTGKLDREQVEFYSLNVCARDRGQPPRLGYLLVNVTVLDVNDNPPIFQQSDYVVALNE 223

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +APIG  VLT       +RA DKDSE N+ L
Sbjct: 224 SAPIGTKVLT-------VRATDKDSEDNSKL 247



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           + V+     LD E    YNL+V AT+       A   +++H+ D ND+ P F Q  Y+  
Sbjct: 389 FDVVRVNGGLDREEIPKYNLTVVATDKGTPPRSATAYLVIHVNDVNDHEPVFQQSEYSAV 448

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +SE +PIG+ V +       I A D DS  NA +
Sbjct: 449 LSELSPIGSFVAS-------ISATDADSGLNARI 475



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G L  +KPLDYE    Y L+VT ++    +  +V ++IV ++D NDN P F    
Sbjct: 1339 IDPLTGTLYLRKPLDYEELEKYTLNVTCSDGGHPRLSSVTTLIVEVIDANDNPPVFPNTA 1398

Query: 73   YTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
                + E    G LV T    P+V I AED DS  N ++
Sbjct: 1399 IARQIRE----GILVHT----PIVTITAEDPDSNENGIV 1429



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G + T K LD E   +Y+L++ A +        +  VHI  +D NDN P F    
Sbjct: 3432 VDPQTGDIETAKQLDRETIPVYDLTIGAIDTGSPPQTGTAAVHIELMDINDNGPIFDPPE 3491

Query: 73   YTGYVSEAAPIGALVLT 89
              GYV+E  P G +V+T
Sbjct: 3492 VIGYVNENEPAGTIVMT 3508



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
            + P  G + T  PLD E T +Y+L++ A + +  +   S +   + + D NDN P F+  
Sbjct: 2415 VDPETGEVFTVVPLDREQTSVYHLTLVAQDSSPTEPQASAVNLTIFVKDVNDNAPRFSSP 2474

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT YV  A   G  V    ++      +D D E + ++
Sbjct: 2475 RYTAYVPGATKSGDFVFGAKAV------DDDDGENSRIV 2507



 Score = 41.6 bits (96), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L + A +          +V+V +LD+NDN P FT+L ++  V
Sbjct: 2733 GEISTNAKLDREEIASYELIIEARDEGQPSLTGTATVLVTVLDKNDNPPQFTRL-FSVNV 2791

Query: 78   SEAAPIGALVLTNTSLPLVI 97
            +E A IG  V+  TS  L I
Sbjct: 2792 TENAEIGTFVIRITSSDLDI 2811



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L VTAT+         V V  HI+D NDN P FT  ++  
Sbjct: 1022 PDGQLYVKNVLDREEQDYYALEVTATDQGSPSRSSVVPVVVHIIDENDNAPEFTNSSFVL 1081

Query: 76   YVSEAAP----IGALVLTN 90
            ++ E  P    +G L+ T+
Sbjct: 1082 HLRENEPPDTFVGKLLATD 1100



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
            +L+P  GV      LDYE  + Y L V AT+  G  A+ S +    +++D NDN P F  
Sbjct: 1885 SLNPSTGVFTLTASLDYEQVQHYILVVQATD-GGIPALSSTVTVYCNVVDLNDNAPIF-- 1941

Query: 71   LNYTGYVSEAAPIGALVLTNTSLP---LVIRAEDKDSETNA 108
                    EA P    ++ NT++    L + A+D DS  N 
Sbjct: 1942 --------EAGPHAVDIVENTTIGTPILSVTAQDLDSGDNG 1974



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P  G+L     LD E    Y L VTA +       +  +V V +LD NDN+P F    Y+
Sbjct: 2097 PVDGLLRVSGSLDRELRSNYTLEVTAKDRGEPPRSSSTTVTVTVLDENDNSPVFDPRQYS 2156

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V+E A IGA VL        + A D+D   N 
Sbjct: 2157 ATVAENASIGASVLQ-------VSAMDRDEGANG 2183



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            G++   + LD E      L+V   N  G +        VIV I D ND  P F Q  Y  
Sbjct: 3330 GIIRVSRRLDRETQNRVVLTVMTKNGGGIRGNDTDEAQVIVSIQDGND-PPEFLQTTYDA 3388

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             VSE A  G  VLT       +RA DKD
Sbjct: 3389 TVSEGAVHGTRVLT-------VRAVDKD 3409



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 19/114 (16%)

Query: 8    FAILKPA----LHPPYGVLLTKKPLDYEATR-------IYNLSVTATNMAGAKAVCSVIV 56
            +++L+P+    + P  G + +KK L Y+ T        +Y+L+V AT+          ++
Sbjct: 2921 YSLLQPSDLFTVDPATGDVFSKKTLKYKHTHRPSSPENLYSLTVVATDNGKPPLSSRTVI 2980

Query: 57   HI--LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            H+  +D N+N P F Q +Y   V E   IG  V+       +I  +D D   NA
Sbjct: 2981 HVSVVDANNNAPRFEQRSYLYPVPENYGIGKRVVQ------LIARDDADFGVNA 3028



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLN 72
            P G L T+K LD E   +YNL ++AT+          +   V V +LD ND +P F    
Sbjct: 1993 PNGTLFTRKLLDREQKPLYNLVLSATDSPSPPGLPLSSTVQVTVVLLDVNDMSPEFISPT 2052

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
                + E AP   +V       + I+A D+D   N  ++
Sbjct: 2053 KISII-ENAPSNTVV-------MAIKAVDRDEGRNGYVE 2083



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            LHP  G L   + LD E    Y L V A +      + ++ + + D NDN P F    Y+
Sbjct: 1783 LHPTTGQLTLAEALDRETREKYVLKVRADDGLQHTDI-ALTIQVTDTNDNAPTFQNTAYS 1841

Query: 75   GYVSEAAPIGALV 87
              V E  P G+ +
Sbjct: 1842 FDVPENMPRGSRI 1854



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   +PLD E+   Y L++ A +        S IV I  LD ND+ P FT+  Y   V
Sbjct: 2316 GDIFLLRPLDRESVAEYTLTLVAMDTGSPPLTGSGIVRIVVLDVNDHIPEFTRQEYRATV 2375

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E     ++  T  + P    A DKD   NA +
Sbjct: 2376 TE----NSVSRTWVTKP---HATDKDEGLNAKI 2401



 Score = 34.7 bits (78), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 39   SVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            +VT   +   +    V+++I D NDN P F +L Y   V+E A IG  +L
Sbjct: 1154 TVTDNGVNRLRDRVKVVIYITDVNDNIPQFQRLPYRVQVNEGAAIGTQLL 1203



 Score = 34.3 bits (77), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 20/106 (18%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN------MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G + +    DYE    Y L + A N      M G     +V+VH+   N+  P F Q  +
Sbjct: 3224 GEITSLTSFDYEEANEYTLDIVAANPDSNPQMVG---FTTVLVHVTGVNEYYPKFIQPVF 3280

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
               VSE+A +G      TS+ LV +A D+DS  +     L  GS+N
Sbjct: 3281 HMDVSESAEVG------TSVGLV-QATDQDSGEDGRVYYLFVGSSN 3319


>gi|327274092|ref|XP_003221812.1| PREDICTED: protocadherin Fat 4-like [Anolis carolinensis]
          Length = 4863

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L   KPLDYE  + + +S++A +         CS+ V+++D NDN+P F+  
Sbjct: 3182 AINASTGALSLAKPLDYEVCQKHEMSISAIDGGWVARTGYCSITVNVIDVNDNSPVFSPE 3241

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS +NA++
Sbjct: 3242 DYFPSVLENAPSGTTVIH-------LSATDADSGSNAVI 3273



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++H   G + + +PLD E    Y L++ A++       A   V++++LD NDN P F+Q+
Sbjct: 2761 SIHRANGEIRSVRPLDRENVAQYMLTIKASDRGTPVQSASVQVLINVLDENDNAPKFSQI 2820

Query: 72   NYTGYVSEAAPIGALV 87
             ++  V E AP+G  V
Sbjct: 2821 -FSALVPENAPLGYTV 2835



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           L P+    +  L+++  LD EAT  Y L   V        +    V V + D NDN P F
Sbjct: 181 LNPSGEGAFLHLVSRGGLDREATPAYQLLLQVEDKGEPRKRGYLQVNVTVQDINDNPPVF 240

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +Q  Y   V E AP+GA VL        + A D D  TNA
Sbjct: 241 SQTLYQARVPEDAPVGASVLQ-------VTAADADEGTNA 273



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++++ D NDN P F   
Sbjct: 1408 SISPNTGSIFLAKALDFETQSMYKLNITAKDKGRPPQSSTMSVVIYVRDYNDNPPKFPPG 1467

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  P+G+ V++       + A D D++ N  L
Sbjct: 1468 DIFKSIVENIPVGSSVIS-------VTAHDPDADINGQL 1499



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      +V  V V +LD NDN+P F  + 
Sbjct: 678 LDPVSGRLSTISQLDREEQGHYSLQVLATDLGYPTLSSVVQVNVSLLDVNDNSPLFYPVQ 737

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ V T
Sbjct: 738 YFAHIQENEPAGSYVAT 754



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD+EAT  Y+L++ A +       +VC++ + +LD NDN+P F +      V E   IG 
Sbjct: 1317 LDHEATASYSLTIQAVDSGAVSLSSVCTLNIEVLDENDNSPSFPKSTLFVDVLENMRIGE 1376

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1377 LVSS-------VTATDSDSGDNADL 1394



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 20/119 (16%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF++ + +     G +    PLD  A   Y + + A+++   +   S I  V + D
Sbjct: 979  NPKDLFSVNEQS-----GAISLTGPLDINAGS-YQVEIMASDLGVPRRSSSFILTVSVHD 1032

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDGST 114
             NDN+P F QL+Y   +SE  P+ +   +       + A DKDS  N      +++G+T
Sbjct: 1033 VNDNSPVFDQLSYEVTISELEPVNSRFFS-------VHASDKDSGENGEIAYNIIEGNT 1084



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NY  
Sbjct: 1092 PDGQLYIKSELDRELQERYTLVVAASDRAVEPLSATVNVSVILEDVNDNRPLFNSTNYAF 1151

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y  E    G+ V         I A DKDS +N 
Sbjct: 1152 YYEEEQVGGSFVGK-------ISAFDKDSGSNG 1177



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV      LDYE  + Y L++ A +  G      V ++ILD NDN P F+  +Y+
Sbjct: 1935 LNPVTGVFNLTCMLDYEMQQYYILTIRAEDGGGQSITVRVYINILDVNDNAPIFSMDSYS 1994

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E    G+ +        +    D D  +N+ L
Sbjct: 1995 TSLMENLSPGSTI-------FLFNVTDADDGSNSQL 2023



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T+  LDYE  + Y+L++ A N+   +  +  +V +H+   N+  P F    
Sbjct: 3287 IDPNTGIITTQGFLDYETKQSYHLTIKAFNVPDEERCSFANVNIHLKGTNEYVPRFVSKL 3346

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   VSEAA  G +V         + A D+D+ T+ 
Sbjct: 3347 YYFEVSEAAAKGTIVGE-------VFASDRDTGTDG 3375



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G+L  ++PLD E+   Y+L V   +MA        +   V + +LD NDN P F     T
Sbjct: 2042 GILSIRQPLDRESQSFYSLIVQVHDMASLPTSRFTSTTQVSIILLDVNDNPPSFISPKLT 2101

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  P+  +V          +A D DS  N+ ++
Sbjct: 2102 -YIPENTPVDTIVFK-------AQATDPDSGPNSYIE 2130



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  GV+  ++ LDYE  R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 297 VDPESGVIRIREALDYELRRQYSLTVQAIDRGVPALSGRAEALIRLLDVNDNEPRVKFRY 356

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A  G +V
Sbjct: 357 FPATSRFASVDENAAPGTVV 376



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G +   K LD E    Y + +TAT+          ++ V + D NDN P F    Y  
Sbjct: 2356 PSGDIHLVKSLDREKKEQYVMLITATDSGSPTLTGTGTIAVKVDDVNDNIPKFAFNMYLK 2415

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E AP G  V       L++ + D D+  NA++
Sbjct: 2416 TIPEDAPTGTDV-------LLVNSSDADASVNAII 2443



 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G     +PLDYEA + Y + + A +M      +   + + ++D NDN P F Q  +   V
Sbjct: 2663 GHFSISQPLDYEAIQKYVVWIEARDMGFPPFSSYAKLEITVIDINDNMPVFEQDPFIVEV 2722

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             E  P   ++         + A DKDS  N  L+
Sbjct: 2723 VENIPPSKII--------TVTAADKDSGPNGQLN 2748



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLN 72
           +H   GV+ +K  LD E    Y L + A +    ++    IV  ++LD  DN P F+Q  
Sbjct: 782 IHNQTGVITSKTVLDREEKTAYQLQIGAYDGGNLQSQNQAIVTVNVLDTQDNPPVFSQDT 841

Query: 73  YTGYVSE 79
           Y+  V E
Sbjct: 842 YSFVVFE 848



 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G L+  K LD E    Y+L V A +   +  +  + + + D ND+ P F++L Y+
Sbjct: 1833 IDPESGELIATKRLDRERRSKYSLLVRADDGLQSSDM-RINITVSDVNDHIPKFSKLWYS 1891

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E    G+LV         I A D+DS  N 
Sbjct: 1892 FDIPEDTTPGSLV-------AAILATDEDSGVNG 1918



 Score = 34.3 bits (77), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 31/107 (28%)

Query: 28  LDYEATRIYNLSVTATNMAGAKA------------------------VCSVIVHILDRND 63
           LD E    YNL+V  T+  GA A                        V S+++ + D ND
Sbjct: 425 LDRERIPTYNLTVAVTDNFGAPAPSPGPVFSSLSPDGAVSAPVSRSSVASLVIFVNDIND 484

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + P F Q  Y   +SE  P G+ V         + A D+DS  NA L
Sbjct: 485 HPPVFGQSVYQVNISEEVPPGSYVEG-------LSATDRDSGLNANL 524


>gi|348514373|ref|XP_003444715.1| PREDICTED: protocadherin gamma-A7-like [Oreochromis niloticus]
          Length = 680

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           +DYEA+  Y +++ A +  G      +++ I+D NDNTP  T  +Y+G +SE +P G +V
Sbjct: 306 IDYEASPNYEINLQAKDPWGVTGASKLVIEIVDENDNTPVITMASYSGKISEDSPPGTVV 365

Query: 88  LTNTSLPLVIRAEDKDSETNA 108
                   +I  +DKDS  N 
Sbjct: 366 -------ALISVQDKDSGKNG 379



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 15/97 (15%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           Y  L+T + LD E    YN+++TAT+     ++  K   SV + + D NDN P F+Q +Y
Sbjct: 400 YYTLITAQTLDREKLPTYNITLTATDEGFPVLSNKK---SVYLEVSDINDNAPAFSQSHY 456

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +  V+E    G  +L        IRA D D   NA +
Sbjct: 457 SAQVTENNSPGVPLLQ-------IRATDLDQGQNARI 486



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  ++ +  LD E    + L +TA +    +   +V +HI  LD NDN+P FTQ  Y   
Sbjct: 190 YAEMVLQSGLDREKQSKHALILTAVDGGEPQMSGTVKIHISVLDANDNSPVFTQSIYKAS 249

Query: 77  VSEAAPIGALVLT 89
           V E A  G ++ T
Sbjct: 250 VLENALRGTIIAT 262



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTG-- 75
           GV+ + + LDYE  + Y + V A +       +  SVIVH+ D+NDN P       TG  
Sbjct: 511 GVIQSLRSLDYEQVKEYKIRVKAQDGGSPPQSSNTSVIVHVQDQNDNPPQILYPVQTGGS 570

Query: 76  YVSEAAPIGALV 87
            V+E  P  A V
Sbjct: 571 LVAEMVPRSADV 582


>gi|68533499|gb|AAH98367.1| Pcdhgb1 protein [Mus musculus]
          Length = 804

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E    Y L V A +     A C+V + ILD NDN P  T ++++
Sbjct: 168 LNPNTGAITTNGTLDFEEKNRYTLGVEAKDGGVHTAHCNVQIEILDDNDNAPEVTFMSFS 227

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E + +G ++        +I+  DKDS  N L+
Sbjct: 228 NQVPEDSVLGTVI-------ALIKVRDKDSGQNGLV 256



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K L+ E T  YN+++TAT+ +G  ++ S   V VHI D NDN P F Q +Y  
Sbjct: 275 YYKLVIDKALNREQTPEYNVTITATD-SGKPSLSSKTCVTVHITDINDNAPVFHQASYLV 333

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V+E  P GA +         + A D D  +N L+
Sbjct: 334 HVAENNPPGASIAQ-------VSASDPDLGSNGLI 361



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           LL + PLD E    ++L +TA  M G      +   V + + D NDN P F+Q  Y   +
Sbjct: 68  LLLETPLDREHQSSHHLILTA--MDGGDPPLSSTTQVWIKVTDANDNAPVFSQDTYKVSL 125

Query: 78  SEAAPIGALVLTNTS 92
            E  P G LVL  T+
Sbjct: 126 RENIPPGTLVLQVTA 140


>gi|397501091|ref|XP_003821231.1| PREDICTED: protocadherin-15-like, partial [Pan paniscus]
          Length = 1136

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 530



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTILV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 841 EENLPAGTTILQ-------IEAKDVD 859



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 878 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 938 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 966



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 589 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 648

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 649 N-------LQATDREGDSITYAIENG 667


>gi|441600761|ref|XP_004087638.1| PREDICTED: protocadherin-15 isoform 2 [Nomascus leucogenys]
          Length = 1782

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 525



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            G++    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1094 GIIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1153

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1154 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1180



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 836 EENLPAGTTILQ-------IEAKDVDLGAN 858



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 584 RTYALTVQAADNAPLAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 643

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 644 N-------LQATDREGDSVTYAIENG 662



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 873 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 932

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 933 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 961


>gi|332834285|ref|XP_507798.3| PREDICTED: protocadherin-15 [Pan troglodytes]
          Length = 1765

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 320 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 379

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 380 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 414



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 454 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 505



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1074 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1133

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1134 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1160



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 756 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTILV 815

Query: 78  SEAAPIGALVL 88
            E  P G  +L
Sbjct: 816 EENLPAGTTIL 826



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 564 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 623

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 624 N-------LQATDREGDSITYAIENG 642



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 853 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 912

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 913 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 941


>gi|296195619|ref|XP_002745420.1| PREDICTED: protocadherin Fat 4 [Callithrix jacchus]
          Length = 4981

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++++AT+         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGVLTLAKALDYELCQKHEMTISATDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRVLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDINDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETKSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT+M      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREDQAFYSLLVLATDMGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSIRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIEAVDSGTVSLNSTCTLNIDILDENDNTPSFPKTTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTVV 3317



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELRVTQSLDRETKEHFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPAAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENMALG 809



 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2879 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 2905



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E   +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDTVVGSSVLQ-------VAAADADEGTNA 283



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+          +V + +LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSITLLDINDFVPIFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDQGSNS 2293


>gi|441600767|ref|XP_004087640.1| PREDICTED: protocadherin-15 isoform 4 [Nomascus leucogenys]
          Length = 1789

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 530



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            G++    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1099 GIIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1159 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1185



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 841 EENLPAGTTILQ-------IEAKDVD 859



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 589 RTYALTVQAADNAPLAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 648

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 649 N-------LQATDREGDSVTYAIENG 667



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 878 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 938 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 966


>gi|390459325|ref|XP_003732275.1| PREDICTED: protocadherin beta-7-like [Callithrix jacchus]
          Length = 795

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVESFY-TLVTEKPLDRERNTDYNITITVTDLGTPRLKTEYNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQSSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 LNPTSGNLYLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVEVTDVNDNQPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 NPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E     +L++TA +        + +V I  +D NDN P F Q  Y   
Sbjct: 191 YPELVLNQELDREDIPELSLALTALDGGSPPRSGTALVRITVVDINDNAPEFVQSFYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E +P+G++V++       + A D D+ +N 
Sbjct: 251 APENSPVGSMVVS-------VSARDLDTGSNG 275


>gi|240975980|ref|XP_002402241.1| protocadherin-16, putative [Ixodes scapularis]
 gi|215491130|gb|EEC00771.1| protocadherin-16, putative [Ixodes scapularis]
          Length = 2493

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 9/88 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            L+ +PLD E    ++L+V A +         C++ VH+LD+NDN P F    Y+  V E 
Sbjct: 1127 LSSRPLDREMQSQFHLTVLARDRGSPPRSGTCNMTVHVLDQNDNDPQFEHSEYSATVPED 1186

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP+   V       LV++A D D  +N 
Sbjct: 1187 APVNTTV-------LVVKATDHDEGSNG 1207



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 8/90 (8%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
            + L   PLD+E   +Y L +  ++ A   A   V VH+ D NDN+P FTQ +Y   + E+
Sbjct: 1652 ITLAGGPLDFERQSLYQLRLRVSDTA-HMAETLVTVHVTDVNDNSPRFTQPSYHAILPES 1710

Query: 81   APIGALVLTNTSLPLVIRAEDKDSETNALL 110
            A +G+ ++T       + A D DS  NA +
Sbjct: 1711 AGLGSSIIT-------VNATDLDSGNNAQI 1733



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYF 68
            K +L P  G +  +  LDY+    + L V A +    +   ++ SV + I D NDN+P+F
Sbjct: 1956 KFSLDPKTGTITVRGKLDYDTVPEFKLVVRAMDSDLESPLSSLVSVFIRIKDENDNSPHF 2015

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSL 93
                YT +V E++PIG  V T  ++
Sbjct: 2016 PLAMYTEFVEESSPIGTTVFTARAM 2040



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQ 70
           A+H   GV+ T+  LD+E    Y+L V A +  GA   +A  S+ VH+LD NDN P F  
Sbjct: 594 AIHRTSGVVTTRTVLDHEQQDYYSLVVVARD-GGAPPMEARLSLKVHVLDLNDNQPTFFT 652

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + +  V E  P+G+ V        V+ A D+D+  N 
Sbjct: 653 SSLSFQVREGVPVGSQV-------GVVNAVDQDAGENG 683



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  KPLD E   +Y+L V A +       A   VI+ I D ND  P F Q  Y  ++
Sbjct: 1859 GEVILAKPLDREKVMMYSLKVVAIDRGTPSMNATAQVIISIDDVNDYAPTFNQTYYEVFI 1918

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE A  GA+V+        + A DKD   +A +
Sbjct: 1919 SEMATPGAVVIQ-------VSATDKDEGRHAQV 1944



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           GVL   KPLD E    + L+V+ ++          ++H+   D ND+ P F +  Y   V
Sbjct: 918 GVLTVAKPLDREDVHHFVLNVSVSDHGRIPLSTFQVLHVYVQDVNDSPPRFLRERYLSNV 977

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE+AP+G  VLT       + A DKD
Sbjct: 978 SESAPVGTSVLT-------VHATDKD 996



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G L+ ++ LDYE  + Y L +TAT+  G+  + S   ++V + D NDN P F +  Y   
Sbjct: 284 GSLMLRQSLDYEVRQKYGLVLTATD-GGSPPLSSNMTLLVEVQDVNDNAPTFERPQYKVN 342

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E+       L+  S  L + A DKD+  NA L
Sbjct: 343 VLES-------LSANSQFLQVSATDKDTGNNARL 369



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
           GVL T + +D+E    Y L VTA + +      S+I   V + D ND  P F        
Sbjct: 705 GVLYTTRAVDFEMASEYTLQVTAADGSALNPRSSIINVRVKVEDVNDCAPTFEDDPVMFS 764

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           VSE+AP G++V T T       A+D DS  N 
Sbjct: 765 VSESAPEGSVVWTFT-------AKDLDSGANG 789



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K  + P  G L  K+ LD E    + L+V   +  G+ A+ S   V V +LD NDN P F
Sbjct: 384 KFGIFPNNGFLYLKEQLDRETADHHTLAVEVVD-NGSPALSSTATVQVRVLDANDNDPMF 442

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +  +  +V E A  G  V T       + A DKD+ +NA L
Sbjct: 443 EKPVFEFFVPEDAEKGRRVGT-------VSAHDKDAGSNAAL 477



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 14   ALHPPYGVLLTKKP--LDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
            ++HP  G +  + P  LDYE  A+ +  +   A   A      +V V ++D NDN P F+
Sbjct: 1434 SIHPTSGTIRIRDPKQLDYEENASLVIVVIAKAEGRATMYGYATVTVDLIDENDNAPRFS 1493

Query: 70   QLNYTGYVSEAAPIGALVLTNTSL 93
            Q  Y   V E    G  V   ++L
Sbjct: 1494 QERYVSSVWEGNSKGTFVAQVSAL 1517



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+ T+   DYE+   Y  ++ AT+  G  A   V V +  +++  P F Q  Y   V  
Sbjct: 2070 GVITTEVVFDYESKNRYYFTILATDAGGKYATVQVQVDVASKDEYPPVFRQKMYRFAVPG 2129

Query: 80   AAPIGALV 87
             AP G +V
Sbjct: 2130 DAPAGHIV 2137



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-------AVCSVIVHILDRNDNTPYFTQLN 72
           G L  +  LDYE    Y L V AT+ A            C VIV   D NDN P F    
Sbjct: 811 GALTLQSQLDYEVQPEYTLVVKATDQAKDSEKRLFTLVTCKVIVE--DENDNIPIFKSKG 868

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
               V E  P+G  VL        I A D DS  N
Sbjct: 869 QVD-VMEDEPVGFTVLH-------IIATDNDSRDN 895



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 4/97 (4%)

Query: 20   GVLLTKKPLDYEATR-IYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G + T K L Y+  + +  L+V AT+        V +V + I D N+N P F +  Y   
Sbjct: 1752 GTIYTNKSLSYDPKKPVVQLTVRATDRGVPSRSTVAAVRIQIADVNNNAPRFLESAYRAS 1811

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            + E  P G  V+  ++  L I + D  +    ++DG+
Sbjct: 1812 IREDTPPGTTVIRVSATDLDI-SRDNHNINYRIMDGN 1847



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 15   LHPPY-GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            + PP  G++ T   LD E    Y L+V AT+    +    C++ + ++D NDN P F   
Sbjct: 1540 MEPPLSGIVKTNIVLDREIRDSYLLTVIATDEGEPQLTGTCTLRIAVVDINDNQPVFPPD 1599

Query: 72   NYTGYVSEAAPIGALVLTNTS 92
            +    +SE A +G+++ T T+
Sbjct: 1600 SVVS-ISEGAEVGSVLTTITA 1619


>gi|440892175|gb|ELR45490.1| Protocadherin gamma-C5 [Bos grunniens mutus]
          Length = 942

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A + AG+    A  ++ ++I D NDNTPYFTQ  Y  Y+ 
Sbjct: 406 LLTSQPLDREATSHYIIELLAHD-AGSPPLHAHLTIRLNISDVNDNTPYFTQQLYMAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNARL 489



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDANDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPVLESTPVGTVV-------GLFNVRDRDSGRNG 383



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E    + L +TA +    A++  ++I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDRETQARHQLVLTAVDGGVPARSGTTLISVTVLDINDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            AP+G L+L        + A D D  TN  LD
Sbjct: 254 NAPVGTLLLR-------LNATDPDEGTNGQLD 278


>gi|410913749|ref|XP_003970351.1| PREDICTED: uncharacterized protein LOC101077501 [Takifugu rubripes]
          Length = 14186

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 20    GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
             G +    P+DYE  R Y + V A +  G      +I+ ++D NDN P    ++++  VSE
Sbjct: 13677 GAITVSGPIDYEKDRKYEVRVEAKDQGGLIGTSKIIIDVIDLNDNPPVINVMSFSSTVSE 13736

Query: 80    AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
              AP G  +        V   +D DS+ N L+  S
Sbjct: 13737 DAPPGTTI-------AVFNVKDADSDKNGLIKCS 13763



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 20    GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
             G +    P+DYE  R Y + V A +  G      +I+ ++D NDN P    ++++  +SE
Sbjct: 12867 GAITVSGPIDYEKDRKYEVRVEAKDQGGLIGTSKIIIDVIDLNDNPPVINVMSFSSTISE 12926

Query: 80    AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
              AP G  +        V   +D DS+ N  +  S
Sbjct: 12927 DAPPGTTI-------AVFNVKDADSDKNGQIKCS 12953



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 19    YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV-IVHIL--DRNDNTPYFTQLNYTG 75
             Y +L+T  PLD E    YN+++TAT+ AG+  + SV I+ I+  D NDN P FTQ  Y  
Sbjct: 11488 YYMLVTDGPLDREFQSEYNITITATD-AGSPPLASVKILKIVVNDINDNPPTFTQREYDA 11546

Query: 76    YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E  P+G  V+        I+A D D  +NA
Sbjct: 11547 NILENQPVGTFVMK-------IQAVDVDDGSNA 11572



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 12/104 (11%)

Query: 10    ILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDN 64
             +LK  +HP    Y  ++ +K LD E     +L + A +    +     ++ V ILD NDN
Sbjct: 11951 VLKQHVHPDGSKYAEMVIEKSLDRETQPRLSLKLLAVDGGNPQRSGTVNIDVDILDANDN 12010

Query: 65    TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              P F Q  Y   V+E AP G L++T       + A D DS +N 
Sbjct: 12011 APVFNQSLYKATVTENAPKGTLIMT-------VNASDIDSGSNG 12047



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E+ +  +L +TA +    +   SV +HI  LD NDN P F+Q  Y   + E
Sbjct: 4299 LVLNKELDRESLKEMSLILTALDGGSPQRSGSVKIHINVLDANDNVPVFSQAVYKASLQE 4358

Query: 80   AAPIGALVLTNTS 92
             +P+G L+LT T+
Sbjct: 4359 NSPVGTLILTLTA 4371



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LD 60
            +P  +F+I        YG LL +K LD E  +   L +TA +    +   +V++H+  LD
Sbjct: 9690 NPHFVFSIQSTNTGSKYGELLLEKELDREEQKDMKLKLTALDGGSPQRSGTVVIHVTVLD 9749

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
             NDN P F+Q  Y+  + E + +   V+T
Sbjct: 9750 ANDNAPVFSQALYSATLPENSSMNTPVIT 9778



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 22    LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
             L++ +  D E+   YN++VTAT+        S  +H++  D NDN P F + +Y+ Y+ E
Sbjct: 12972 LISDQFFDRESVSKYNITVTATDSGTPPLSTSTTLHLIISDVNDNAPLFEKQSYSAYIVE 13031

Query: 80    AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 G  + T       + A D D   NA +
Sbjct: 13032 NNSPGTSIFT-------VSARDSDWNQNARI 13055



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            AL+P  G +     +DYE    Y + ++A +  G  A  ++++ I D NDN P     + 
Sbjct: 3595 ALNPKTGEVTVASSIDYEKKSSYEMQMSAKDGLGLVAYATLMIEITDVNDNAPVIQLKSL 3654

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            T  V E    G+ V        +I  +D+DSE N
Sbjct: 3655 TNPVPEDVSPGSEV-------GIINVQDRDSENN 3681



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E     NL +TA +    +   +V++H+  LD NDN P F+Q  Y   + E
Sbjct: 7348 LVLDKELDREKQHELNLQLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKASLPE 7407

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P+  +V+        + A D D   N 
Sbjct: 7408 NSPVDTVVMQ-------VSATDADEGVNG 7429



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E     NL +TA +    +   +V++H+  LD NDN P F+Q  Y   + E
Sbjct: 8137 LVLDKELDREKQHELNLQLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKASLPE 8196

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P+  +V+        + A D D   N 
Sbjct: 8197 NSPVDTVVMQ-------VSATDADEGVNG 8218



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 35/73 (47%)

Query: 15    LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
             + P  G +      DYE    + L V A +  G  + C +I+ ++D NDN P     + +
Sbjct: 11381 IDPLTGEVRVAGLFDYEEANTHELDVQAKDGGGQASHCKLIIDVMDVNDNKPVIEIKSAS 11440

Query: 75    GYVSEAAPIGALV 87
               V+E +P G +V
Sbjct: 11441 ANVAEDSPAGTMV 11453



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E     NL +TA +    +   +V++H+  LD NDN P F+Q  Y   + E
Sbjct: 5904 LVLDKELDREKQHELNLQLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKASLPE 5963

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P+  +V+        + A D D   N 
Sbjct: 5964 NSPLDTVVMQ-------VSATDADEGVNG 5985



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E     NL +TA +    +   +V++H+  LD NDN P F+Q  Y   + E
Sbjct: 8912 LVLDKELDREKQHELNLQLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKASLPE 8971

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P+  +V+        + A D D   N 
Sbjct: 8972 NSPLDTVVMQ-------VSATDADEGVNG 8993



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G +    PLD+E+   Y + + A +  G  + C +++ I D NDN P     + T
Sbjct: 353 LNSKTGEIKVSGPLDFESNPNYEMRIDAKDGFGLSSDCKLMIKITDVNDNAPVIHVKSLT 412

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             V E    G+ V        +I  +D+DSE N
Sbjct: 413 DPVPEDVSPGSEV-------GIINVQDRDSENN 438



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 22    LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
             L++ +  D E+   YN++VTAT+        S  +H++  D NDN P F + +Y+ Y+ E
Sbjct: 13782 LISDQFFDRESVSKYNITVTATDSGTPPLSTSTTLHLIISDVNDNAPLFEKQSYSAYIVE 13841

Query: 80    AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 G  + T         A D D   NA +
Sbjct: 13842 NNSPGTSIFT-------FSARDSDWNQNARI 13865



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            Y  LL  K LD E  R   + +TA +    +   +V++H+  LD NDN P F+Q  Y   
Sbjct: 5113 YCELLLDKELDREDQREMMMLLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKAS 5172

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E +P+  +V+        + A D D   N+
Sbjct: 5173 LPENSPLDTVVMQ-------VSATDADEGVNS 5197



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+   G +    PLD+E+   Y + + A +  G  + C +++ I D NDN P     + T
Sbjct: 1972 LNSKTGEIKVSGPLDFESNPNYEMRIDAKDGFGLSSDCKLMIKITDINDNAPVIYVKSLT 2031

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
              V E    G+ V        +I  +D+DSE N
Sbjct: 2032 DPVPEDVSPGSEV-------GIINVQDRDSENN 2057



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 2079 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 2138

Query: 77   VSEAAPIGALVLT 89
            VSE    G+++ +
Sbjct: 2139 VSENNRAGSILCS 2151



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 20    GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
             G +   K +D+E  +     + A +  G      V V +LD NDN P    +++T  VSE
Sbjct: 12071 GRITVAKEIDFEKDKRIEFRIEAKDQGGLTDSAKVEVEVLDVNDNAPVINVMSFTNPVSE 12130

Query: 80    AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + +G  +        +I  +D DS  N 
Sbjct: 12131 DSAVGTTI-------GIINVKDVDSGENG 12152



 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            +D+E T I+ L VTA +  G  +   VI+ + D NDN P     + +  + E    G+ V
Sbjct: 4412 VDFETTSIFELRVTAKDGLGLTSYAKVIIDVTDVNDNPPVIYVKSMSSQIPEDVSPGSEV 4471

Query: 88   LTNTSLPLVIRAEDKDSETN 107
                    +I  +D+DSE N
Sbjct: 4472 -------GIINVQDRDSEKN 4484



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            Y  LL  K LD E  +   + +TA +    +   +V++H+  LD NDN P F+Q  Y   
Sbjct: 1028 YCELLLDKELDREDQKEMMMLLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKAS 1087

Query: 77   VSEAAPIGALVL 88
            + E +P+  +V+
Sbjct: 1088 LPENSPLDTVVM 1099



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            Y  LL  K LD E  +   + +TA +    +   +V++H+  LD NDN P F+Q  Y   
Sbjct: 3494 YCELLLDKELDREDQKEMMMLLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKAS 3553

Query: 77   VSEAAPIGALVL 88
            + E +P+  +V+
Sbjct: 3554 LPENSPLDTVVM 3565



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 460 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 519

Query: 77  VSEAAPIGA 85
           VSE    G+
Sbjct: 520 VSENNRAGS 528



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 2868 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 2927

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 2928 VSENNRAGS 2936



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 3703 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 3762

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 3763 VSENNRAGS 3771



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 4506 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 4565

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 4566 VSENNRAGS 4574



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 5322 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 5381

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 5382 VSENNRAGS 5390



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 6111 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 6170

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 6171 VSENNRAGS 6179



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 6766 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 6825

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 6826 VSENNRAGS 6834



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 7555 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 7614

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 7615 VSENNRAGS 7623



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 8344 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 8403

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 8404 VSENNRAGS 8412



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 9119 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 9178

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 9179 VSENNRAGS 9187



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 9916 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEEESYSAY 9975

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 9976 VSENNRAGS 9984



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 10    ILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDN 64
             ILK   +P    Y  ++ +KPLD E      L + A +    +   +V + I  LD NDN
Sbjct: 13557 ILKQHANPDGSKYAEMVLQKPLDRERHPHLTLKLIAVDGGTPQRSGTVNIDITVLDANDN 13616

Query: 65    TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P F Q  Y   + E   IG  V+T       + A D DS  N L+
Sbjct: 13617 APVFNQSVYKASIMENTKIGTNVVT-------VNATDADSGINGLI 13655



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN++++AT+        S  +H  + D NDN P F + +Y+ Y
Sbjct: 1237 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLHLSVADINDNPPVFEKESYSAY 1296

Query: 77   VSEAAPIGA 85
            VSE    G+
Sbjct: 1297 VSENNRAGS 1305



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            +DYE    Y L ++A +  G  +  ++I+ + D NDN P     + T  V E    G+ V
Sbjct: 5228 IDYETESTYELQISAKDGLGLGSYATLIIEVTDVNDNAPVIQLKSLTNPVPEDVSPGSEV 5287

Query: 88   LTNTSLPLVIRAEDKDSETN 107
                    +I  +D+DSE N
Sbjct: 5288 -------GIINVQDRDSEKN 5300



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            +DYE    Y L ++A +  G  +  ++I+ + D NDN P     + T  V E    G+ V
Sbjct: 6672 IDYETESTYELQISAKDGLGLGSYATLIIEVTDVNDNAPVIQLKSLTNPVPEDVSPGSEV 6731

Query: 88   LTNTSLPLVIRAEDKDSETN 107
                    +I  +D+DSE N
Sbjct: 6732 -------GIINVQDRDSEKN 6744



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +  K  LD+E    Y+L + A +  G  +   VI+ + D NDN P     + T  + E
Sbjct: 9017 GGIKVKGALDFETVTTYDLRIKAKDGLGLSSYTKVIIDVTDVNDNIPIIYVKSITSPIPE 9076

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                G+ V        +I  +D DSE N ++
Sbjct: 9077 NVSPGSEV-------GIINVQDADSENNQVV 9100



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E  +  NL + A +    +     ++ + +LD NDN P F Q  Y   + E
Sbjct: 1872 LVLDKELDREKEQNVNLVMVAVDGGNPQRSGTATIQITVLDANDNAPVFEQAVYKANLPE 1931

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             A +G +VLT       + A D D   N 
Sbjct: 1932 NAALGTVVLT-------VSASDADEGVNG 1953



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 22    LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
             L+  K LD E     NL +TA +    +   +V++H+  LD NDN P F+Q  Y   + E
Sbjct: 10498 LVLDKELDREKQHELNLQLTALDGGSPQRSGTVVIHVTVLDANDNAPVFSQAVYKASLPE 10557

Query: 80    AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + +  +V+        + A D D   N 
Sbjct: 10558 NSHLDTVVMQ-------VSATDADEGVNG 10579



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            +DYE    Y + ++A +  G  +  ++I+ I D NDN P     + T  V E    G+ V
Sbjct: 1143 IDYERKATYEMQISAKDGLGLGSYATLIIEITDVNDNAPVIQLKSLTNPVPEDVSPGSEV 1202

Query: 88   LTNTSLPLVIRAEDKDSETN 107
                    +I  +D+DSE N
Sbjct: 1203 -------GIINVQDRDSENN 1215



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E  +  NL + A +    +     ++ + +LD NDN P F Q  Y   + E
Sbjct: 253 LVLDKELDREKEQNVNLVMVAVDGGNPQRSGTATIQITVLDANDNAPVFEQAVYKADLPE 312

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A +G +VLT       + A D D   N 
Sbjct: 313 NAALGTVVLT-------VSASDADEGVNG 334



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E  +  NL + A +    +     ++ + +LD NDN P F Q  Y   + E
Sbjct: 2661 LVLDKELDREKEQNVNLVMVAVDGGNPQRSGTATIQITVLDANDNAPVFEQAVYKADLPE 2720

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             A +G +VLT       + A D D   N 
Sbjct: 2721 NAALGTVVLT-------VSASDADEGVNG 2742



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            +DYE+   Y + V A +  G  +   VI+ + D NDN P     + T  V E    G+ V
Sbjct: 8250 IDYESESSYEIRVKAKDGLGLSSYAKVIISVTDVNDNAPIINIKSLTNPVPEDVSPGSEV 8309

Query: 88   LTNTSLPLVIRAEDKDSETN 107
                    +I  +D+DSE N
Sbjct: 8310 -------GIINVQDRDSENN 8322



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 28    LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
             +DYE+   Y + V A +  G  +   VI+ + D NDN P     + T  V E    G+ V
Sbjct: 10611 IDYESESSYEIRVKAKDGLGLSSYAKVIISVTDVNDNAPIINIKSLTNPVPEDVSPGSEV 10670

Query: 88    LTNTSLPLVIRAEDKDSETN 107
                     +I  +D+DSE N
Sbjct: 10671 -------GIINVQDRDSENN 10683



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            +DYE+   Y + V A +  G  +   VI+ + D NDN P     + T  V E    G+ V
Sbjct: 6017 IDYESESSYEIRVKAKDGLGLSSYAKVIISVTDVNDNAPIINIKSLTNPVPEDVSPGSEV 6076

Query: 88   LTNTSLPLVIRAEDKDSETN 107
                    +I  +D+DSE N
Sbjct: 6077 -------GIINVQDRDSEKN 6089



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            +DYE+   Y + V A +  G  +   VI+ + D NDN P     + T  V E    G+ V
Sbjct: 7461 IDYESESSYEIRVKAKDGLGLSSYAKVIISVTDVNDNAPIINIKSLTNPVPEDVSPGSEV 7520

Query: 88   LTNTSLPLVIRAEDKDSETN 107
                    +I  +D+DSE N
Sbjct: 7521 -------GIINVQDRDSEKN 7533



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 19    YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
             Y  L+ KK LD E    + L +   +          SV V +LD NDN P F+Q  Y  +
Sbjct: 11278 YPELVLKKALDRETQAEHVLRINGIDGGSPARSGTASVHVRVLDANDNVPVFSQRVYKAF 11337

Query: 77    VSEAAPIGALV 87
             V E +  G ++
Sbjct: 11338 VMENSARGTVI 11348



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 20    GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTP-YFTQLNYTGY 76
             G L T +  DYE +  + + VT  +    +  + C+V V I D+NDN P     +  +G+
Sbjct: 11597 GALFTSRLFDYEQSVHFQIKVTVHDGGSPQLSSTCTVNVFIKDQNDNAPVVLYPVQTSGF 11656

Query: 77    VSE-----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             ++E      AP G LV         + A D DS  NA L
Sbjct: 11657 IAEDMVPFEAPRGYLVTK-------VVAVDADSGHNAWL 11688



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 10    ILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDN 64
             ILK   +P    Y  ++ +KPLD E      L + A +    +   +V + I  LD NDN
Sbjct: 12747 ILKQHANPDGSKYAEMVLQKPLDRERHPHLTLKLIAVDGGTPQRSGTVNIDITVLDANDN 12806

Query: 65    TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P F Q  Y   + E   IG+ V+T       + A D DS    L+
Sbjct: 12807 APVFNQSVYKASIMENTKIGSNVVT-------VNATDADSGIYGLI 12845



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 19    YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGY 76
             Y  L+T   LD E    YN++++AT+        S  ++  + D NDN P F + +Y+ Y
Sbjct: 10705 YYSLVTTGQLDRELVSDYNITISATDEGSPPLSSSKTLNLSVADINDNPPVFEEESYSAY 10764

Query: 77    VSEAAPIGA 85
             VSE    G+
Sbjct: 10765 VSENNRAGS 10773



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +L+   G +     +DYE  + Y + V A +  G  +   VI+ I D NDN P     + 
Sbjct: 9808 SLNQHTGEITVTGNIDYEDGQKYEVFVEAKDGYGLSSETKVIIDITDVNDNAPVIYVKSL 9867

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
               V+E    G+ V        +I  +D+DSE N
Sbjct: 9868 KDPVAEDVSPGSEV-------GIINVQDRDSENN 9894



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+   G +    PLD+E+   Y + + A +  G      +++ I D NDN P     +  
Sbjct: 2761 LNSKTGEIKVSGPLDFESNPNYEMRINANDGFGLSTDSKLMIKITDVNDNAPVIHVKSLI 2820

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
              V E    G+ V        +I  +D+DSE N
Sbjct: 2821 DPVPEDVSPGSEV-------GIINVQDRDSENN 2846


>gi|296192989|ref|XP_002744333.1| PREDICTED: protocadherin beta-11 [Callithrix jacchus]
          Length = 797

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+   YN+S+TAT++     K    + V + 
Sbjct: 384 SIPEDLPFVLKSSVENYY-TLETERPLDRESRAEYNISITATDLGTPRLKTEYKITVRVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 443 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +H   G +  + PLD+E+   Y++ + AT+  G     +V + ++D NDN P  T  + T
Sbjct: 294 IHQKSGEITLRAPLDFESIESYSMIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSIT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P         ++ +V   +D DS  N 
Sbjct: 354 SPIPENTP--------ETVVMVFSIQDIDSGENG 379



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LDYE     +  +TA +           V V ++D NDN+P F Q  Y   
Sbjct: 191 YPELVLDKALDYEEQPELSFILTALDGGSPPRSGTALVKVMVVDVNDNSPEFQQAFYEVE 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E + +G+LV+T       + A D DS TN  L
Sbjct: 251 ILENSILGSLVVT-------VSAWDLDSGTNGEL 277



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560


>gi|11128037|ref|NP_061745.1| protocadherin gamma-B1 isoform 1 precursor [Homo sapiens]
 gi|37999833|sp|Q9Y5G3.1|PCDGD_HUMAN RecName: Full=Protocadherin gamma-B1; Short=PCDH-gamma-B1; Flags:
           Precursor
 gi|5456957|gb|AAD43724.1| protocadherin gamma B1 [Homo sapiens]
 gi|119582356|gb|EAW61952.1| hCG1982215, isoform CRA_ae [Homo sapiens]
          Length = 927

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y LSV A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y VLL +KPLD E    + L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPVLLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIGALV 87
           VSE  P GA +
Sbjct: 457 VSENNPPGASI 467


>gi|402872813|ref|XP_003900295.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin beta-16 [Papio
           anubis]
          Length = 743

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EAT  YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREATAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ  YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTFYTFFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 34/63 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  +K +D+EA   Y + + AT+  G    C++++ ++D NDN P  T    T  + E
Sbjct: 299 GEIRLRKQVDFEAVTSYEVHIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPE 358

Query: 80  AAP 82
            +P
Sbjct: 359 NSP 361



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +        +  VHI  +D NDN P F Q  Y   
Sbjct: 191 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVHIEVVDINDNAPEFEQPIYKVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E + +G+LV T       + A D DS  N 
Sbjct: 251 IPENSSLGSLVAT-------VSARDLDSGANG 275


>gi|44890274|gb|AAH66823.1| Pcdhgb7 protein [Mus musculus]
          Length = 931

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L+P  G ++T + LD+E    Y + V A +     + C VI+ +LD NDN P     + 
Sbjct: 293 SLNPLTGDIVTLQSLDFEEVERYTIGVEAKDRGSLSSQCKVIIEVLDENDNRPEIIITSL 352

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  +SE +P G +V        + +  D+DS  NA
Sbjct: 353 SDQISEDSPSGTVV-------ALFKVRDRDSGENA 380



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++TAT+       +  ++ +++ D NDN P F Q  Y   
Sbjct: 401 YYKLVTDSILDREQTPGYNVTITATDRGKPPLSSSTTITLNVADVNDNAPVFQQQAYLIN 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V+E    G  +         ++A D D  +N L+
Sbjct: 461 VAENNQPGTSITQ-------VKAWDPDVGSNGLV 487



 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L  +K LD EA   ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELELQKMLDREAESTHHLVLTAVDGGDPPRTGTAQLRIRVVDANDNPPVFSQDLYRVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  VL        ++A D+D   NA
Sbjct: 251 LPEDLPPGTTVLR-------LKAMDQDEGINA 275


>gi|149017327|gb|EDL76378.1| rCG49295, isoform CRA_n [Rattus norvegicus]
          Length = 867

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G + T K LDYE +R Y L V A + +  +    V++ ILD NDN P     + +
Sbjct: 291 LDPLTGEISTSKNLDYEDSRFYELDVEARDQSDLQDRAKVLITILDVNDNAPEVVVTSAS 350

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             ++E AP G ++        + +  DKDSE N L+
Sbjct: 351 RAIAENAPPGTVI-------ALFQVYDKDSERNGLV 379



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+T + LD E    YN++VTAT+        K   S+   + D NDN P F++ +Y+
Sbjct: 398 YFRLVTNEELDREQVSSYNITVTATDRGTPPLSTKKFISL--DVADINDNPPVFSRSSYS 455

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            YV E  P G  + +       + A D DSE NA
Sbjct: 456 VYVPENNPKGVSIFS-------LNAVDPDSEENA 482



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLN 72
           P Y  L+ +  LD E   +++L + A  M G   V      ++V ++D NDN P FTQ  
Sbjct: 186 PKYPELVLEHSLDREEEAVHHLVLVA--MDGGDPVRTGMARILVTVVDVNDNAPVFTQPI 243

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   V E  P+G  VLT       + A D+D   +A
Sbjct: 244 YRVSVPENLPLGTRVLT-------VNATDQDEGAHA 272


>gi|403271744|ref|XP_003927769.1| PREDICTED: protocadherin Fat 4 [Saimiri boliviensis boliviensis]
          Length = 4981

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++++AT+         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGVLTLAKALDYELCQKHEMTISATDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRVLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDINDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT+M      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREDQAFYSLLVLATDMGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++       A   V+++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSIRPLDREKISHYVLTIKSSDKGSPSQSASVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPTYSLVIEAVDSGTISLNSTCTLNIDILDENDNTPSFPKTTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L++TAT+ +G+ A+    ++ V + D NDN P F   +Y   
Sbjct: 2314 GELRVTQSLDRETKEHFVLTITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKSYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADTSTNAVI 2399



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTVV 3317



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPAAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+       +   V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPPLSSSAEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y
Sbjct: 2820 INPSTGDIIISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSY 2877



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y L+V AT+      K   +V + +LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYLLTVQATDRGSTPRKDTSTVSIALLDINDFVPIFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDQGSNS 2293



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   +YNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGKITVTAELDRETLPVYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVIT 3529


>gi|158295627|ref|XP_316322.4| AGAP006256-PA [Anopheles gambiae str. PEST]
 gi|157016127|gb|EAA10759.5| AGAP006256-PA [Anopheles gambiae str. PEST]
          Length = 1821

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
           +++ V+ F       HP  G L  ++ LDYE  + Y+L++ A +  G +   +V + ++D
Sbjct: 532 LAYAVKGFGAEFFRTHPTEGGLYVERQLDYEEQKSYSLALVARDGGGRETNANVFIDVMD 591

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NDN P F  L YT  + E A       T       +RA D D  T  
Sbjct: 592 ENDNHPAFEALEYTRTIREGA-------TEFEPQFFVRAVDVDGPTQG 632



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 28   LDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
            LD E   +  L V A +  G      KA   V+V +LD NDN P F Q +YT  + E   
Sbjct: 1136 LDREKQSVLKLIVVAEDAPGRPQDAKKATTEVMVDVLDVNDNAPIFGQRSYTAVIPENVL 1195

Query: 83   IGALVLTNTS 92
            +   V+  T+
Sbjct: 1196 VDTFVIAITA 1205



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 26/43 (60%)

Query: 50  AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           A  +V V I D ND  P FTQ +YT YVSE + I + VL  T+
Sbjct: 810 ATTTVHVKIQDINDKPPKFTQQSYTAYVSERSAIDSEVLRVTA 852



 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 22  LLTKKPLDY----EATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +L    LDY    E  + +   + A+     K+  +V V + D NDN+P F Q +Y+  V
Sbjct: 447 VLDSSRLDYDVPSEEAKTFRFQLVASVDGEEKSTANVTVRLQDANDNSPTFPQASYSLQV 506

Query: 78  SEAAPIG 84
            E +P G
Sbjct: 507 RENSPQG 513



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 25  KKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
           ++PLD+E    Y L++ A + +     +AV SV + ILD  D  P F    Y+  + E  
Sbjct: 213 RRPLDFETRPSYILTIQARDGSPTNSLRAVASVAITILDVQDQPPIFINAPYSATIPENT 272

Query: 82  PIGALVLT 89
             G  VLT
Sbjct: 273 IEGTRVLT 280


>gi|91090474|ref|XP_968232.1| PREDICTED: similar to cadherin [Tribolium castaneum]
          Length = 3246

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 14/103 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFT 69
           + P  GV+ T+  LD E T +Y L V AT++A  +     +  SV++HILD NDN P F+
Sbjct: 461 IDPKTGVITTRLMLDRETTEVYTLIVAATDLASPQTARKSSSASVVIHILDDNDNYPQFS 520

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNALL 110
           +  YT  + E        +  TS P++  I+A D D   NA +
Sbjct: 521 ERTYTVALDED-------IDWTSNPVIAHIKATDADQGNNAAI 556



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+   +PLDY+  + Y L+VTA++  G     +V V+I D N+  P F    YT  V E
Sbjct: 792 GVITVAQPLDYKQEKRYILTVTASDSGGRTDTATVYVNITDANNFAPVFENAPYTASVFE 851

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            A +G  V       LV+ A D D   NA +
Sbjct: 852 DAAVGTTV-------LVVSATDNDVGLNAQI 875



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLN 72
            + P  GV+ T K LD E+  +Y L   A +        SV   +HI D ND+ P F    
Sbjct: 997  IDPTSGVIRTNKGLDRESVAVYELEAYAIDRGSPTLSSSVPVTIHIDDINDSPPAFDSDK 1056

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               Y++E +PIG+ V         I A+D D   NA++
Sbjct: 1057 IVLYIAENSPIGSTVGE-------IHAKDPDEGVNAIV 1087



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 3   HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILD 60
           HP +        ++P  G ++T + LD E T  Y L+VTA +           V + + D
Sbjct: 885 HPAEF------TINPQTGAIITTRTLDRETTSGYLLTVTARDGGNPPLSDTTDVEISLTD 938

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            NDN P F Q  Y+G V E A +G  V+
Sbjct: 939 VNDNYPVFKQAAYSGSVLEDALVGTSVV 966



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G + TK  LD E   ++   VTA +           + +++LD ND+ P F    
Sbjct: 347 IDPKTGTITTKVKLDREMVDVHYFRVTAMDDSFPPRSGTTMLQINVLDANDHAPTFEMNE 406

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   + E+  +G+ V+T       ++A D+D   NA
Sbjct: 407 YDASIKESVSVGSTVIT-------LKATDQDVGKNA 435



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T K LD E    +   V AT+       A  SVI+ + D NDN P F    Y   V
Sbjct: 687 GWITTTKELDREDQSKFMFQVIATDQGTPPQSASASVIITVQDVNDNDPVFEPKIYESVV 746

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
           SE  P G  V T       + A D D +T
Sbjct: 747 SEDDPPGTPVAT-------VTATDADEDT 768



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLDYE  R Y L + A +  G+ A      +++++ D NDN P F    +   + E AP
Sbjct: 582 KPLDYETLRSYRLVIRAQD-GGSPARSNTTQLLINVKDVNDNAPRFYTSLFQESIQENAP 640

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNA 108
            G  ++        ++A D D   NA
Sbjct: 641 AGYSIVK-------VQAYDADEGPNA 659


>gi|403256578|ref|XP_003920946.1| PREDICTED: uncharacterized protein LOC101030039 [Saimiri boliviensis
            boliviensis]
          Length = 2605

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 8/96 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G +L ++ LDYE  R Y +++ A +  G  A C+V+V +LD NDN P     + +
Sbjct: 1895 INPLSGEILLRELLDYELVRSYKINIQAMDGGGLSARCTVVVEVLDTNDNPPELIVSSLS 1954

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V+E +P   ++L       V + +D+DS  N  +
Sbjct: 1955 NSVAENSP--GMILA------VFKIKDRDSGENGKM 1982



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M   +     ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREAKAEYNITLTVTDMGTPRLQTEYNLTVQISDVNDNAPA 450

Query: 68  FTQLNYTGYVSE 79
           FTQ +YT +V E
Sbjct: 451 FTQTSYTLFVRE 462



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
            +LKP++   Y  L+T++ LD EA   YN+++T T+M   +     ++ V I D NDN P 
Sbjct: 969  LLKPSVKNFY-TLVTERALDREAKAEYNITLTVTDMGTPRLQTEYNLTVQISDVNDNAPA 1027

Query: 68   FTQLNYTGYVSE 79
            FTQ +YT +V E
Sbjct: 1028 FTQTSYTLFVRE 1039



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
             LKP++   Y +L+T+  LD E+   YN+++T T++     K   S+ V + D NDN P 
Sbjct: 1993 FLKPSVDNFY-ILMTEGALDRESRAEYNITITVTDLGNPRLKTEHSITVLVSDVNDNAPA 2051

Query: 68   FTQLNYTGYVSEAAPI 83
            FTQ +YT       P+
Sbjct: 2052 FTQTSYTXXXXXXLPL 2067



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K LD+E T  Y + + A +  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPMTGEIRLRKQLDFETTMSYEVDIKAADGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 353

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 354 SPIPENSP 361



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K LD+E T  Y + + A +  G    C++++ ++D NDN P  T    T
Sbjct: 871 VNPMTGEIRLRKQLDFETTMSYEVDIKAADGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 930

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 931 SPIPENSP 938



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G +  +K LD+E T  Y + + A +  G    C++++ ++D NDN P  T    T
Sbjct: 1424 VNPMTGEIRLRKQLDFETTMSYEVDIKAADGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 1483

Query: 75   GYVSEAAP 82
              + E +P
Sbjct: 1484 SPIPENSP 1491



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+  K LD E     +L++TA +       A  +V + +LD NDN P FT+  Y   
Sbjct: 1792 YPELVLDKALDREEQGELSLTLTALDGGSPPRSATSTVNILVLDVNDNAPQFTEALYETQ 1851

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              E +P+G+L++        + AED DS  N 
Sbjct: 1852 APENSPVGSLIVK-------VSAEDVDSGVNG 1876



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 1321 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQ 1380

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E +P+G+LV T       + A D DS  N 
Sbjct: 1381 IPENSPLGSLVAT-------VSARDLDSGANG 1405



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V++ ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTALVLIEVVDSNDNAPEFEQPIYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+ +LV T       + A D DS  N 
Sbjct: 251 IPENSPLDSLVAT-------VSARDLDSGANG 275



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V++ ++D NDN P F Q  Y   
Sbjct: 768 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTALVLIEVVDSNDNAPEFEQPIYKVQ 827

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+ +LV T       + A D DS  N 
Sbjct: 828 IPENSPLDSLVAT-------VSARDLDSGANG 852


>gi|74355151|gb|AAI03929.1| Protocadherin gamma subfamily B, 1 [Homo sapiens]
          Length = 810

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y LSV A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y VLL +KPLD E    + L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPVLLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIGALV 87
           VSE  P GA +
Sbjct: 457 VSENNPPGASI 467


>gi|395817790|ref|XP_003782335.1| PREDICTED: protocadherin gamma-B7 [Otolemur garnettii]
          Length = 810

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++T +PLD+E    Y ++V A +       C VI+ ILD NDN+P     + +  +SE
Sbjct: 299 GSIVTHQPLDFEEVERYTMNVEAKDRGSLSTQCKVIIDILDANDNSPEIIITSLSDQISE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++TAT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDGALDREQTLEYNITITATDKGKPPLSSSKTITLHIADVNDNAPVFEQSTYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L ++A +           + + ++D NDN P FTQ  Y   
Sbjct: 191 YPELVLQKTLDRETQSTHHLVLSALDGGDPPQSGTAQIRILVVDANDNPPVFTQEVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  VL        +RA D+D   N+
Sbjct: 251 LGEEVPPGTSVLR-------VRATDQDEGINS 275


>gi|270014310|gb|EFA10758.1| starry night [Tribolium castaneum]
          Length = 3257

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 14/103 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFT 69
           + P  GV+ T+  LD E T +Y L V AT++A  +     +  SV++HILD NDN P F+
Sbjct: 461 IDPKTGVITTRLMLDRETTEVYTLIVAATDLASPQTARKSSSASVVIHILDDNDNYPQFS 520

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNALL 110
           +  YT  + E        +  TS P++  I+A D D   NA +
Sbjct: 521 ERTYTVALDED-------IDWTSNPVIAHIKATDADQGNNAAI 556



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+   +PLDY+  + Y L+VTA++  G     +V V+I D N+  P F    YT  V E
Sbjct: 792 GVITVAQPLDYKQEKRYILTVTASDSGGRTDTATVYVNITDANNFAPVFENAPYTASVFE 851

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            A +G  V       LV+ A D D   NA +
Sbjct: 852 DAAVGTTV-------LVVSATDNDVGLNAQI 875



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLN 72
            + P  GV+ T K LD E+  +Y L   A +        SV   +HI D ND+ P F    
Sbjct: 997  IDPTSGVIRTNKGLDRESVAVYELEAYAIDRGSPTLSSSVPVTIHIDDINDSPPAFDSDK 1056

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               Y++E +PIG+ V         I A+D D   NA++
Sbjct: 1057 IVLYIAENSPIGSTVGE-------IHAKDPDEGVNAIV 1087



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 3   HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILD 60
           HP +        ++P  G ++T + LD E T  Y L+VTA +           V + + D
Sbjct: 885 HPAEF------TINPQTGAIITTRTLDRETTSGYLLTVTARDGGNPPLSDTTDVEISLTD 938

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            NDN P F Q  Y+G V E A +G  V+
Sbjct: 939 VNDNYPVFKQAAYSGSVLEDALVGTSVV 966



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G + TK  LD E   ++   VTA +           + +++LD ND+ P F    
Sbjct: 347 IDPKTGTITTKVKLDREMVDVHYFRVTAMDDSFPPRSGTTMLQINVLDANDHAPTFEMNE 406

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   + E+  +G+ V+T       ++A D+D   NA
Sbjct: 407 YDASIKESVSVGSTVIT-------LKATDQDVGKNA 435



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T K LD E    +   V AT+       A  SVI+ + D NDN P F    Y   V
Sbjct: 687 GWITTTKELDREDQSKFMFQVIATDQGTPPQSASASVIITVQDVNDNDPVFEPKIYESVV 746

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
           SE  P G  V T       + A D D +T
Sbjct: 747 SEDDPPGTPVAT-------VTATDADEDT 768



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 11/86 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLDYE  R Y L + A +  G+ A      +++++ D NDN P F    +   + E AP
Sbjct: 582 KPLDYETLRSYRLVIRAQD-GGSPARSNTTQLLINVKDVNDNAPRFYTSLFQESIQENAP 640

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNA 108
            G  ++        ++A D D   NA
Sbjct: 641 AGYSIVK-------VQAYDADEGPNA 659


>gi|363747331|ref|XP_003643984.1| PREDICTED: protocadherin beta-2-like [Gallus gallus]
          Length = 811

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K PLD+E T  Y L V AT+  G  A+C V+V ++D NDN P     +++  + E
Sbjct: 293 GEIRVKTPLDFETTHKYELGVRATDGGGLSALCKVLVEVMDVNDNAPEIVVSSFSSPIPE 352

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               G +V       L +R  D+DS  N 
Sbjct: 353 NVETGTVVAL-----LAVR--DQDSGANG 374



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L+ ++PLD E     + ++ AT+        +  +HI  +D NDN P FT   YTG+++E
Sbjct: 188 LVLQQPLDREEQSELDFTLVATDGGSPPRSGTTQIHIIVMDVNDNAPIFTHDIYTGHIAE 247

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +AP G+LVL        + A D D  TN 
Sbjct: 248 SAPEGSLVLR-------VMATDADVGTNG 269



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRNDNTPY 67
           L+PA    Y  L+T   LD E    + + VTA + AG+  + S     V I D NDN P 
Sbjct: 388 LRPAFKN-YYELVTVSTLDREERAQHMVVVTAAD-AGSPPLTSTHTFSVDISDVNDNAPV 445

Query: 68  FTQLNYTGYVSE 79
           F Q +YT YV E
Sbjct: 446 FNQTSYTMYVHE 457


>gi|297676221|ref|XP_002816039.1| PREDICTED: protocadherin beta-7 [Pongo abelii]
          Length = 793

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEYNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGNLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEISEFSLTLTALDGGSPPRSGTALVRILVLDINDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 569

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 570 APCTELVPRAAEPGYLVTK-------VVAVDSDSGQNAWL 602


>gi|14270490|ref|NP_115266.1| protocadherin gamma-B1 isoform 2 precursor [Homo sapiens]
 gi|5457082|gb|AAD43777.1|AF152517_1 protocadherin gamma B1 short form protein [Homo sapiens]
 gi|74353521|gb|AAI03927.1| Protocadherin gamma subfamily B, 1 [Homo sapiens]
 gi|74355149|gb|AAI03928.1| Protocadherin gamma subfamily B, 1 [Homo sapiens]
 gi|119582359|gb|EAW61955.1| hCG1982215, isoform CRA_ah [Homo sapiens]
          Length = 810

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y LSV A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y VLL +KPLD E    + L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPVLLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIGALV 87
           VSE  P GA +
Sbjct: 457 VSENNPPGASI 467


>gi|432878487|ref|XP_004073333.1| PREDICTED: protocadherin gamma-A6-like [Oryzias latipes]
          Length = 798

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L     +DYE  +I+ + V A +  G     +VI+ ++D NDN P  T  + +  + E
Sbjct: 281 GDLTVNSAIDYENDKIFEIGVQAKDQGGQSTSTNVIIEVVDVNDNAPLITLTSLSSTIPE 340

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            +PIGA V        +I  +D DS  N  +D S N
Sbjct: 341 DSPIGATV-------AIIHVKDIDSGKNGKVDCSVN 369


>gi|345793771|ref|XP_849036.2| PREDICTED: protocadherin alpha-13 [Canis lupus familiaris]
          Length = 923

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 18/110 (16%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHI 58
           P  L+A +   ++P  G + TK  LD+E  ++Y +SV AT+     MAG    C+++V I
Sbjct: 287 PAVLYAFM---INPNSGEIRTKGKLDFEEKKLYEISVEATDKSNIPMAGH---CTILVEI 340

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           LD NDNTP  T  +    V E A +G ++        +I   D+DS  N 
Sbjct: 341 LDINDNTPEITITSLGLPVREDAQVGTVI-------ALISVSDRDSGANG 383



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E+   Y L VTA +       A  SV V + D NDN P F Q  YT +
Sbjct: 404 YYSLVLDSALDRESVANYALVVTARDGGSPSLSATASVSVEVADVNDNAPAFAQPEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ KK LD E  + ++L +TA++  G K        +++ ILD NDN P F Q  Y   V
Sbjct: 194 LVLKKSLDREQIQEHSLLLTASD--GGKPELTGTVQLLITILDVNDNAPEFDQFIYKVTV 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E A  G LV+        + A D D  TN 
Sbjct: 252 LEDAFNGTLVIK-------LNATDLDDGTNG 275


>gi|426350352|ref|XP_004042741.1| PREDICTED: protocadherin gamma-B1 [Gorilla gorilla gorilla]
          Length = 810

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y LSV A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIGALV 87
           VSE  P GA +
Sbjct: 457 VSENNPPGASI 467



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    + L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPELLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272


>gi|149017326|gb|EDL76377.1| rCG49295, isoform CRA_m [Rattus norvegicus]
          Length = 929

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G + T K LDYE +R Y L V A + +  +    V++ ILD NDN P     + +
Sbjct: 291 LDPLTGEISTSKNLDYEDSRFYELDVEARDQSDLQDRAKVLITILDVNDNAPEVVVTSAS 350

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             ++E AP G ++        + +  DKDSE N L+
Sbjct: 351 RAIAENAPPGTVI-------ALFQVYDKDSERNGLV 379



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+T + LD E    YN++VTAT+        K   S+   + D NDN P F++ +Y+
Sbjct: 398 YFRLVTNEELDREQVSSYNITVTATDRGTPPLSTKKFISL--DVADINDNPPVFSRSSYS 455

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            YV E  P G  + +       + A D DSE NA
Sbjct: 456 VYVPENNPKGVSIFS-------LNAVDPDSEENA 482



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 13/98 (13%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLN 72
           P Y  L+ +  LD E   +++L + A  M G   V      ++V ++D NDN P FTQ  
Sbjct: 186 PKYPELVLEHSLDREEEAVHHLVLVA--MDGGDPVRTGMARILVTVVDVNDNAPVFTQPI 243

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y   V E  P+G  VLT       + A D+D   +A +
Sbjct: 244 YRVSVPENLPLGTRVLT-------VNATDQDEGAHAQI 274


>gi|332234759|ref|XP_003266571.1| PREDICTED: protocadherin gamma-B7 [Nomascus leucogenys]
          Length = 807

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VI+ +LD NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIIEVLDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPSGVVV-------ALFKTRDRDSGENG 380



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|260783947|ref|XP_002587032.1| hypothetical protein BRAFLDRAFT_183786 [Branchiostoma floridae]
 gi|229272166|gb|EEN43043.1| hypothetical protein BRAFLDRAFT_183786 [Branchiostoma floridae]
          Length = 581

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 8/90 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  GV++ ++PLDYE T+ Y L+V A +  G  +  +V V++ D NDN P F    Y+
Sbjct: 496 ITPKTGVIILRRPLDYEQTQHYVLTVQARDGGGRASSVTVYVNVKDLNDNPPVFDPDRYS 555

Query: 75  G-YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              +SE  P G  +LT       + A D+D
Sbjct: 556 ADDISEDVPAGTSILT-------VSATDRD 578



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRND 63
           +L     P+    +  L T + LD E    Y L+++A +         ++V+I   D ND
Sbjct: 67  ELVVTTNPSGEASFLHLQTNQNLDREIRSSYQLNISAQDGGSPPRYGYLLVNISVRDSND 126

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           N P F Q  Y   ++E+APIG  VLT       +RA D D  TNA +
Sbjct: 127 NPPIFDQSEYIVSLNESAPIGTSVLT-------VRATDIDEGTNAEI 166


>gi|410948495|ref|XP_003980974.1| PREDICTED: protocadherin gamma-B1 [Felis catus]
          Length = 763

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y LSV A +     A C+V + I+D NDN P  T ++++
Sbjct: 292 LNPNTGDITTNGTLDFEETSRYMLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTVMSFS 351

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + IG ++        + +  D+DS  N L+
Sbjct: 352 NQIPEDSDIGTVI-------ALFKVRDRDSGENGLV 380



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL +KPLD E    Y L +TA +           + + + D NDN P F+Q  Y   
Sbjct: 189 YPELLLEKPLDREQQSSYQLILTAIDGGDPPLSGTTQIQIQVTDANDNAPLFSQDTYRVN 248

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  VL        + A D+D   NA
Sbjct: 249 IQENVPWGTSVLQ-------VMATDQDQGVNA 273



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+    LD E    YN+++TAT+  G  ++ S   V +HI D NDN P F Q +Y  
Sbjct: 399 YYKLVIDNALDREQMAEYNVTITATD-EGKPSLSSSTGVTLHISDVNDNAPVFHQASYVV 457

Query: 76  YVSEAAPIGALV 87
            V E  P GA +
Sbjct: 458 RVMENNPPGASI 469


>gi|195160152|ref|XP_002020940.1| GL16483 [Drosophila persimilis]
 gi|194117890|gb|EDW39933.1| GL16483 [Drosophila persimilis]
          Length = 5086

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +L ++ LDY+  + Y+L++T  ++      AV  + + + D NDN P F Q  Y GYV
Sbjct: 3193 GGILIRQQLDYDLVQEYHLNITVQDLGFQPLSAVALLTIILTDVNDNPPLFNQSEYHGYV 3252

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E  P+G  V           A DKDS  NA++
Sbjct: 3253 AENKPVGTFVFQ-------AHATDKDSPKNAIV 3278



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  + PLD E    Y L+V+  +       +V  V++H++D NDN P FT   +T 
Sbjct: 1031 PDGYLFVRAPLDREERDYYALTVSCQDSGDPSRSSVVPVVIHVIDENDNAPQFTNSTFTF 1090

Query: 76   YVSEAAPIGALV 87
             + E AP    V
Sbjct: 1091 SIPENAPADTFV 1102



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            +L+P  G+L     LDYE  + Y L V A +        ++ V+  +LD NDN P F  +
Sbjct: 1873 SLNPQTGMLTLTARLDYEEVQHYILIVQAQDSGQPSLSTTITVYCNVLDLNDNAPLFDPM 1932

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +Y+  V E  P G  V+T       + A+D DS  N L++
Sbjct: 1933 SYSSEVFENVPTGMEVVT-------VSAKDIDSGNNGLIE 1965



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            +L+P  G+L     LD E    Y L++TA +           ++V ILD NDN+P F   
Sbjct: 2129 SLNPTDGLLRIVDALDRELRSSYVLNITARDRGEPPQATTTQLLVRILDENDNSPVFDPK 2188

Query: 72   NYTGYVSEAAPIGALVL 88
             Y+  V+E A IGA+VL
Sbjct: 2189 QYSASVAENASIGAMVL 2205



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V A +    +     SV++H+LD+NDN P FT+L ++  V
Sbjct: 2770 GEIYTTMRLDREELSDYAFVVEAVDQGVPQLTGTASVLLHLLDKNDNPPKFTRL-FSLNV 2828

Query: 78   SEAAPIGALVLTNTSLPL 95
            +E A IG+ V+  TS  L
Sbjct: 2829 TENAEIGSFVIRVTSSDL 2846



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            GV+   + LD E      L+V A N    +        +I+ I D ND  P F +  YT 
Sbjct: 3403 GVIHVARHLDRETQNRVVLTVMAKNYGSIRGNDTDEAQIIISIQDGND-PPEFLKRYYTS 3461

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             +SEAAPIG  V T       +RA DKD
Sbjct: 3462 VISEAAPIGTKVTT-------VRAVDKD 3482



 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYT 74
           P + ++     LD E    YNL+V A +      + +  +I+ + D ND+ P F +  Y+
Sbjct: 385 PLFHIVRVNGVLDREEIGKYNLTVVAMDRGTPARITTAHLIIDVNDVNDHEPVFEKSEYS 444

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE AP G+ V +       I A D+D+  NA
Sbjct: 445 AVLSELAPTGSYVAS-------ITATDEDTGVNA 471



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G + +    DYE  R + L + A N  +  ++  ++ VHIL  N+  P F Q  +   VS
Sbjct: 3299 GTISSAATFDYEERRTFALQLKAKNPDSSMESYATLYVHILGVNEFYPQFLQPVFHFDVS 3358

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
            E + +G +V         ++A DKDS  +     LL GS+N
Sbjct: 3359 ETSAVGTIV-------GAVQATDKDSGEDGRVYYLLVGSSN 3392



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L++ A +        + IV   + D NDN P F   +Y   +
Sbjct: 2348 GAIALLKQLDRETQSEYILTLVAMDTGSPPLTGTGIVRVEVQDINDNGPVFELQSYHASI 2407

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  PIG LVL  T       A DKD+  NA L
Sbjct: 2408 QENLPIGTLVLQPT-------ATDKDAGLNAKL 2433



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTPYFTQLN 72
            GV+ T + +D E+   + L+V AT+ A         + + +VIV   D NDN P F  +N
Sbjct: 1449 GVIHTLREIDRESIDTFRLTVVATDRAQPSSRQLSTEKLVTVIVE--DINDNAPIFVSMN 1506

Query: 73   YTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
                   AA +   +  N   P++ ++A D DS +N L+
Sbjct: 1507 -------AAILPLKLQGNREEPVIQVQARDADSSSNGLV 1538



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYE T  Y + V A++      ++V  V +++ D NDN P   +L Y   V E      
Sbjct: 2675 LDYELTHAYEIWVEASDGDRPSLRSVMLVTINVTDANDNAPIMDKLIYNAEVLEEESPPQ 2734

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
            L+        V++A D+DS  N 
Sbjct: 2735 LI-------AVVKARDRDSGDNG 2750



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA--KAVCSVIVHILD 60
            PVQ+  +    +    G+L T   LD EA    Y + V A  + G    A   V V +LD
Sbjct: 1660 PVQVDRLFD--IDAKLGILSTAAELDREAGPNSYEVEVYAIALGGQPRTAHTKVKVTVLD 1717

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +ND+ P F +  +   VSE   IG  + T       IRA D D+
Sbjct: 1718 KNDSPPQFLETPFAYNVSEDLEIGHTIAT-------IRAHDPDT 1754



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   K L+YE    Y L+V A + A    A     +I+ ILD NDN P F    Y   
Sbjct: 2240 GVVRVAKNLNYERNARYTLTVRAEDCAVENSASDTAELIIGILDINDNRPTFLDSPYLAR 2299

Query: 77   VSE 79
            V E
Sbjct: 2300 VME 2302



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y+L + A  T +       +V + + D NDN P F      GYV
Sbjct: 3510 GEISTAARLDREDIAHYSLVIGAIDTGLPPQTGSATVRIDLDDVNDNGPVFAPEGLLGYV 3569

Query: 78   SEAAPIGALVLT 89
            SE  P G  ++T
Sbjct: 3570 SENEPAGTSIMT 3581


>gi|229442261|gb|AAI72773.1| FAT tumor suppressor 1 precursor [synthetic construct]
          Length = 1338

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           GV+    PLD+EA   Y LS+ AT+ + GA A   V + + D NDN P F Q +Y   +S
Sbjct: 158 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAVTLS 217

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
           EA+ IG  V+        +RA D DSE N
Sbjct: 218 EASVIGTSVVQ-------VRATDSDSEPN 239



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 14/109 (12%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K ++    G +   + LDYE++  Y L+V AT+        V +V V++ D NDNTP F+
Sbjct: 1201 KFSIDSKTGAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFS 1260

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            Q  YT  +SE A +   V+T       + A+D D  +N     +++DG+
Sbjct: 1261 QDTYTTVISEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 1302



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++  +KPLD E   +Y LS+ A +    +   A  +VIV +LD NDN P F    Y   
Sbjct: 1103 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 1162

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VSE   +G  VL        + A  +D E NA
Sbjct: 1163 VSEDILVGTEVLQ-------VYAASRDIEANA 1187



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L  +K LD+E T+ Y  S+ A          A   V + + D NDN+P F    Y  +
Sbjct: 682 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 741

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G+ V+        IRA D DS TN 
Sbjct: 742 IVENLPGGSRVIQ-------IRASDADSGTNG 766



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  L+P  G L T  PLD E   +Y+L V AT+  G     S+++ + D NDN P F+  
Sbjct: 993  KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSAD 1052

Query: 72   NYTGYVSEAAPIGALV 87
             Y   V E    G L+
Sbjct: 1053 PYAITVFENTEPGTLL 1068



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G++   + LDYE +R + + V A +  G   + S   V V + D NDN P F Q  Y   
Sbjct: 264 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYEAR 322

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
           +SE AP G  V         ++A D DS
Sbjct: 323 ISEHAPHGHFV-------TCVKAYDADS 343



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
           A++   G + T K LD+E    Y + V A++      + S   V V + D ND+ P FT 
Sbjct: 785 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 844

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
             Y G VSE  P G ++        ++   D DSE
Sbjct: 845 EIYKGTVSEDDPQGGVI-------AILSTTDADSE 872



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 25  KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KKPLD E    Y L++TAT+    +KA+  V V +LD NDN+P   +  Y+  + E    
Sbjct: 905 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 962

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G L++        I A D D  +NA
Sbjct: 963 GKLIMQ-------ISATDADIRSNA 980



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T + LD E  A ++ ++ + A +  G  A C+V V + D NDN P F    Y   +
Sbjct: 470 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 529

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +A  G  V+        + A D D  +NA
Sbjct: 530 GSSAAKGTSVVK-------VLASDADEGSNA 553


>gi|198475669|ref|XP_001357109.2| GA17399 [Drosophila pseudoobscura pseudoobscura]
 gi|198137906|gb|EAL34175.2| GA17399 [Drosophila pseudoobscura pseudoobscura]
          Length = 4959

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +L ++ LDY+  + Y+L++T  ++      AV  + + + D NDN P F Q  Y GYV
Sbjct: 3064 GGILIRQQLDYDLVQEYHLNITVQDLGFKPLSAVALLTIILTDVNDNPPLFNQSEYHGYV 3123

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E  P+G  V           A DKDS  NA++
Sbjct: 3124 AENKPVGTFVFQ-------AHATDKDSPKNAIV 3149



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 18  PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           P G L  + PLD E    Y L+V+  +       +V  V++H++D NDN P FT   +T 
Sbjct: 874 PDGYLFVRAPLDREERDYYALTVSCQDSGDPSRSSVVPVVIHVIDENDNAPQFTNSTFTF 933

Query: 76  YVSEAAPIGALV 87
            + E AP    V
Sbjct: 934 SIPENAPADTFV 945



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            +L+P  G+L     LDYE  + Y L V A +        ++ V+  +LD NDN P F  +
Sbjct: 1744 SLNPQTGMLTLTARLDYEEVQHYILIVQAQDSGQPSLSTTITVYCNVLDLNDNAPLFDPM 1803

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +Y+  V E  P G  V+T       + A+D DS  N L++
Sbjct: 1804 SYSSEVFENVPTGMEVVT-------VSAKDIDSGNNGLIE 1836



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            +L+P  G+L     LD E    Y L++TA +           ++V ILD NDN+P F   
Sbjct: 2000 SLNPTDGLLRIVDALDRELRSSYVLNITARDRGEPPQATTTQLLVRILDENDNSPVFDPK 2059

Query: 72   NYTGYVSEAAPIGALVL 88
             Y+  V+E A IGA+VL
Sbjct: 2060 QYSASVAENASIGAMVL 2076



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y   V A +    +     SV++H+LD+NDN P FT+L ++  V
Sbjct: 2641 GEIYTTMRLDREELSDYAFVVEAVDQGVPQLTGTASVLLHLLDKNDNPPKFTRL-FSLNV 2699

Query: 78   SEAAPIGALVLTNTSLPL 95
            +E A IG+ V+  TS  L
Sbjct: 2700 TENAEIGSFVIRVTSSDL 2717



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 41/88 (46%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            GV+   + LD E      L+V A N    +        VI+ I D ND  P F +  YT 
Sbjct: 3274 GVIHVARHLDRETQNRVVLTVMAKNYGSIRGNDTDEAQVIISIQDGND-PPEFLKRYYTS 3332

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             +SEAAPIG  V T       +RA DKD
Sbjct: 3333 VISEAAPIGTKVTT-------VRAVDKD 3353



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYT 74
           P + ++     LD E    YNL+V A +      + +  +I+ + D ND+ P F +  Y+
Sbjct: 457 PLFHIVRVNGVLDREEIGKYNLTVVAMDRGTPARITTAHLIIDVNDVNDHEPVFEKSEYS 516

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE AP G+ V +       I A D+D+  NA
Sbjct: 517 AVLSELAPTGSYVAS-------ITATDEDTGVNA 543



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 14/94 (14%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L   + LD E+  +++L V A + A      + A  S++V  LD NDN P FTQ +  
Sbjct: 1105 GQLTLARKLDRESQDVHHLIVEARDAALKGPLSSNATISIVV--LDENDNAPEFTQSSSE 1162

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V E +P G  ++         RA D D   N+
Sbjct: 1163 VSVLETSPSGTELMR-------FRASDSDQGVNS 1189



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G + +    DYE  R + L + A N  +  ++  ++ VHIL  N+  P F Q  +   VS
Sbjct: 3170 GTISSAATFDYEERRTFALQLKAKNPDSSMESYATLYVHILGVNEFYPQFLQPVFHFDVS 3229

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
            E + +G +V         ++A DKDS  +     LL GS+N
Sbjct: 3230 ETSAVGTIV-------GAVQATDKDSGEDGRVYYLLVGSSN 3263



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGYV 77
            G +   K LD E    Y L++ A +        + IV   + D NDN P F   +Y   +
Sbjct: 2219 GAIALLKQLDRETQSEYILTLVAMDTGSPPLTGTGIVRVEVQDINDNGPVFELQSYHASI 2278

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  PIG LVL  T       A DKD+  NA L
Sbjct: 2279 QENLPIGTLVLQPT-------ATDKDAGLNAKL 2304



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYE T  Y + V A++      ++V  V +++ D NDN P   +L Y   V E      
Sbjct: 2546 LDYELTHAYEIWVEASDGDRPSLRSVMLVTINVTDANDNAPIMDKLIYNAEVLEEESPPQ 2605

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
            L+        V++A D+DS  N 
Sbjct: 2606 LI-------AVVKARDRDSGDNG 2621



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA--KAVCSVIVHILD 60
            PVQ+  +    +    G+L T   LD EA    Y + V A  + G    A   V V +LD
Sbjct: 1531 PVQVDRLFD--IDAKLGILSTAAELDREAGPNSYEVEVYAIALGGQPRTAHTKVKVTVLD 1588

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            +ND+ P F +  +   VSE   IG  + T       IRA D D+
Sbjct: 1589 KNDSPPQFLETPFAYNVSEDLEIGHTIAT-------IRAHDPDT 1625



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTPYFTQLN 72
            GV+ T + +D E+   + L+V AT+ A         + + +VIV   D NDN P F  +N
Sbjct: 1320 GVIHTLREIDRESIDTFRLTVVATDRAQPSSRQLSTEKLVTVIVE--DINDNAPIFVSMN 1377

Query: 73   YTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
                   AA +   +  N   P++ ++A D DS +N L+
Sbjct: 1378 -------AAILPLKLKGNRKEPVIQVQARDADSSSNGLV 1409



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+   K L+YE    Y L+V A + A    A     +I+ ILD NDN P F    Y   
Sbjct: 2111 GVVRVAKNLNYERNARYTLTVRAEDCAVENSASDTAELIIGILDINDNRPTFLDSPYLAR 2170

Query: 77   VSE 79
            V E
Sbjct: 2171 VME 2173



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y+L + A  T +       +V + + D NDN P F      GYV
Sbjct: 3381 GEIRTAARLDREDIAHYSLVIGAIDTGLPPQTGSATVRIDLDDVNDNGPVFAPEGLLGYV 3440

Query: 78   SEAAPIGALVLT 89
            SE  P G  ++T
Sbjct: 3441 SENEPAGTSIMT 3452



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHI 58
           + H  +L     P+    Y  L T   LD E+   Y L+++A +           V V I
Sbjct: 216 VDHKFRLATTTNPSGDTSYLHLETTGNLDRESRGSYQLNISARDGGSPPRLGFLQVNVTI 275

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           LD NDN P F   +Y   ++E A  G  V+T       + A D D   N+ L
Sbjct: 276 LDVNDNPPIFDHSDYNVSLNETAVAGTPVVT-------VMASDNDLGDNSKL 320


>gi|62510901|sp|Q5DRE9.1|PCDA3_PANTR RecName: Full=Protocadherin alpha-3; Short=PCDH-alpha-3; Flags:
           Precursor
          Length = 950

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A  SV V + D NDN P F+Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIHS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383



 Score = 34.3 bits (77), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + AG   + S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVYALQPLDHEELELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLM 567

Query: 71  LNYTGY---VSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
               G    VSE  P  +GA  +        +RA D DS  NA L
Sbjct: 568 PRVGGIGGAVSELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607


>gi|9256586|ref|NP_061729.1| protocadherin alpha-3 isoform 1 precursor [Homo sapiens]
 gi|13878429|sp|Q9Y5H8.1|PCDA3_HUMAN RecName: Full=Protocadherin alpha-3; Short=PCDH-alpha-3; Flags:
           Precursor
 gi|5456910|gb|AAD43705.1| protocadherin alpha 3 [Homo sapiens]
          Length = 950

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A  SV V + D NDN P F+Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383



 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ KK L+ E T  + L +TA +  G K        + + +LD NDN P F +  Y   +
Sbjct: 194 LVLKKNLNREDTPKHYLLITAID--GGKPELTGTTQLKITVLDVNDNAPAFERTIYKVRL 251

Query: 78  SEAAPIGALVLT 89
            E AP G LV+T
Sbjct: 252 LENAPNGTLVVT 263



 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + AG   + S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVYALQPLDHEELELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLM 567

Query: 71  LNYTGY---VSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
               G    VSE  P  +GA  +        +RA D DS  NA L
Sbjct: 568 PRVGGIGGAVSELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607


>gi|444713192|gb|ELW54100.1| Protocadherin gamma-A3 [Tupaia chinensis]
          Length = 1889

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  G + T   LD+E T  Y L V A +     A C+V + I+D NDN P  T ++ T
Sbjct: 1021 LNPNTGAITTNGTLDFEETSRYMLGVEARDGGVHTAHCNVQIEIVDENDNAPEVTFMSST 1080

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E + +G ++        +I+ +D+DS  N L+
Sbjct: 1081 NQIPEDSELGTII-------ALIKVQDQDSGQNGLV 1109



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E    YN+S+ AT+           + + + D NDN P F+  +Y+ Y
Sbjct: 379 YYRLVTARSLDREEMSEYNISLRATDRGSPPLSTETHITLQVADINDNPPSFSHSSYSAY 438

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + +       ++A+D DS+ NA +
Sbjct: 439 IPENNPRGASIFS-------VKAQDPDSDDNARI 465



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G +   K LDYE    Y + + A +  G  ++  ++V +LD NDN P  T  + T
Sbjct: 272 LNPKTGDITILKSLDYEDAMFYEIKIEAQDGPGLFSIAKILVTVLDVNDNAPEITITSLT 331

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           G V E A  G  +        +I   D+DS  N 
Sbjct: 332 GSVLEEATAGREI-------ALINVHDRDSGQNG 358



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+ ++ LD E   ++ L + AT+  G   V S    + V +LD NDN P FTQ  Y+
Sbjct: 169 YPELVLERALDREEKEVHQLVLVATD--GGDPVRSGNLGIRVIVLDANDNPPVFTQPEYS 226

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E+ P+G  +LT       + A D D   NA
Sbjct: 227 VSVLESVPVGTRLLT-------VNATDPDEGFNA 253



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  LL +KPLD E    + L +TA +           + + + D NDN P F+Q  Y   
Sbjct: 918  YPELLLEKPLDREHQTSHRLILTAVDGGDPPLSGTTQIQIQVTDANDNAPVFSQDIYRVS 977

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G   L        + A D+D   NA
Sbjct: 978  LRENVPQGTFALQ-------VMATDQDEGVNA 1002



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+  + L+ E T  YN+++TA +       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 1128 YYKLVIDRRLNREETAEYNVTITAIDRGKPPLSSRTSITLHIADVNDNAPIFHQASYIVH 1187

Query: 77   VSE 79
            V+E
Sbjct: 1188 VAE 1190



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            Y  L+ ++ LD E    ++L +TA +        +  +HI  +D NDN P FT+  Y   
Sbjct: 1561 YPELVLEQALDREEEAAHHLVLTAFDGGHPVLSGTARIHITLVDTNDNAPVFTRPEYHVS 1620

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P+G  +L        I+A D D   N 
Sbjct: 1621 VQENVPVGTRLLN-------IKATDPDEGANG 1645


>gi|128485564|ref|NP_001076055.1| protocadherin alpha-3 precursor [Pan troglodytes]
          Length = 950

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A  SV V + D NDN P F+Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIHS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383



 Score = 34.3 bits (77), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + AG   + S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVYALQPLDHEELELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLM 567

Query: 71  LNYTGY---VSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
               G    VSE  P  +GA  +        +RA D DS  NA L
Sbjct: 568 PRVGGIGGAVSELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607


>gi|395817815|ref|XP_003782343.1| PREDICTED: protocadherin beta-8 [Otolemur garnettii]
          Length = 1217

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T+KPLD E    YN+++T T++     K   S+ + + D NDN P 
Sbjct: 388 LLKPSVENFY-TLITEKPLDRERNTEYNITITVTDLGTPRLKTEHSITLLVSDINDNAPT 446

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D+DS TNA
Sbjct: 447 FTQTSYTLFVRENNSPALHIGT-----------ISATDRDSGTNA 480



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L  K  L+YE+ + Y L+V A +  G    C+V+V + D NDN+P     ++T  ++E
Sbjct: 295 GNLHLKAELNYESIQTYTLTVQAKDGGGLSGKCTVVVEVTDINDNSPELLMSSFTSPIAE 354

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P         ++  V R  DKDS  N 
Sbjct: 355 NSP--------ETVVAVFRIRDKDSGNNG 375



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 8/99 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V+V ++D ND+ P  T   +T
Sbjct: 864 INPLTGEIQLKKQLDFETIQSYEINIEARDAGSFSGKCTVLVQVMDVNDHAPEVTMSAFT 923

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             VSE  P         S+  V    D DSE N  +  S
Sbjct: 924 SSVSENLP--------ESVVAVFSVSDLDSEENGKISCS 954



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 17/93 (18%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
            LLT++PLD E    YN+++T +++   +    V + +L  D NDN P FTQ +YT +V E
Sbjct: 973  LLTERPLDRETRAEYNITITISDLGTPRLKTQVNITVLVSDINDNAPTFTQTSYTLFVRE 1032

Query: 80   ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                A  IG            I A D+DS TNA
Sbjct: 1033 NNSPALHIGT-----------ISATDRDSGTNA 1054



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E     +L++TA +    +   + +V IL  D NDN P F Q  Y   
Sbjct: 187 YPELVLDQVLDREEIPELSLTLTAWDGGSPRRSGTALVRILVVDINDNAPEFVQSLYKVQ 246

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG++V++       + A D D+ +N 
Sbjct: 247 MPENSPIGSMVVS-------VSARDLDTGSNG 271



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 761 YPELVLDKALDREEEPELKLTLTALDGGSPPRSGTAQVYIEVVDFNDNAPEFEQPFYRVQ 820

Query: 77  VSEAAPIGALVLT 89
           + E +PIG  V+T
Sbjct: 821 IPEDSPIGFPVVT 833


>gi|127139454|ref|NP_001076038.1| protocadherin gamma-B1 precursor [Pan troglodytes]
 gi|62510863|sp|Q5DRB0.1|PCDGD_PANTR RecName: Full=Protocadherin gamma-B1; Short=PCDH-gamma-B1; Flags:
           Precursor
          Length = 927

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y LSV A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFVSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIGALV 87
           VSE  P GA +
Sbjct: 457 VSENNPPGASI 467



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    + L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPELLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272


>gi|363733446|ref|XP_420617.3| PREDICTED: protocadherin Fat 4 [Gallus gallus]
          Length = 5019

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L   KPLD+E  + + L VTAT+         CSV ++++D NDN+P F+  
Sbjct: 3172 AINTTTGTLTLAKPLDFELCQKHELIVTATDGGWVSRTGFCSVTINVIDVNDNSPTFSPE 3231

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS  NA++
Sbjct: 3232 DYFPNVLENAPSGTTVIR-------LNASDADSGPNAVI 3263



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 40/74 (54%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L++ A +  G  A   V  +ILD NDN P F+  +Y+
Sbjct: 1925 LNPVTGVFNLTRALDYEAQQYYILTIRAEDGGGQFATIRVYFNILDINDNPPVFSMTSYS 1984

Query: 75   GYVSEAAPIGALVL 88
              + E    G+ +L
Sbjct: 1985 TSLMENLAPGSAIL 1998



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 22/113 (19%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ A++           VI+++LD NDN P F+Q+ ++  V
Sbjct: 2757 GEIRSVRPLDREKLSRYTLTIKASDKGTPLQSTTVKVIINVLDENDNAPRFSQI-FSASV 2815

Query: 78   SEAAPIGALV-------------------LTNTSLPLVIRAEDKDSETNALLD 111
             E AP+G  V                   + +TSLP VI     D   + LL+
Sbjct: 2816 PENAPLGFTVTRVTTSDEDIGMNAISRYSIRDTSLPFVINPSTGDITVSRLLN 2868



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++++ D NDN P F   
Sbjct: 1398 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIYVRDFNDNPPNFPAG 1457

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  P+G+ V++       + A D D++ N  L
Sbjct: 1458 DIFKSIIENIPVGSSVIS-------VTANDSDADINGQL 1489



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYF 68
           L P+    +  L+++  LD EAT  Y L V   +      +    V V + D NDN P F
Sbjct: 176 LNPSGEGAFLHLVSQGGLDREATPSYQLLVQVEDKGEPRRRGYLQVNVTVQDINDNPPVF 235

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +Q  Y   V E AP+GA VL        + A D D  TNA
Sbjct: 236 SQTLYQARVPEDAPVGASVLQ-------VAAADADEGTNA 268



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           P Q+F      L P  G L T   LD E    ++L V AT++      +V  V V +LD 
Sbjct: 662 PRQVFR-----LDPVSGKLSTISQLDREEQAHFSLQVLATDLGSPPLSSVARVNVSLLDV 716

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLT 89
           NDN+P F  + Y  ++ E  P G  V T
Sbjct: 717 NDNSPVFYPVQYFAHIQENEPAGTYVTT 744



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD+EAT  Y+L + A +       + C++ + +LD NDN+P F +   +  V E   +G 
Sbjct: 1307 LDHEATASYSLVIQAVDSGAVSLSSTCTLSIDVLDENDNSPSFPKSTLSVDVLENMRVGE 1366

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1367 LVSS-------VTATDSDSGDNADL 1384



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
           +H   G++ TK  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  
Sbjct: 772 VHGKTGIITTKIALDREEKTAYQLQIVATDGGHLQSQNQAIVTITVLDTQDNPPVFSQGM 831

Query: 73  YTGYVSEAAPIGALVLT 89
           Y   V E   +G  V T
Sbjct: 832 YGFVVFENVALGYHVGT 848



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL  ++PLD E+   Y+L V   +MA   A        V + +LD ND+ P F     T
Sbjct: 2032 GVLSIQQPLDRESQSFYSLVVQVHDMAPLPASRYTSTAQVSIILLDVNDSPPSFISPKLT 2091

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2092 -YIPENTPIDTIVFK-------AQATDPDSGPNSYIE 2120



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  GV+  ++ LDYE  + Y+L+V AT+            ++ +LD NDN P     Y
Sbjct: 292 VDPESGVIRIRERLDYELCQQYSLTVQATDRGVPALSGRAEALIRLLDVNDNEPRVKFRY 351

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A  G +V
Sbjct: 352 FPATSRFASVDENAAPGTVV 371



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  ++ V + D NDN P F   NY  
Sbjct: 1082 PDGQLYIKSELDRELQERYILLVVASDRAVEPLNATVNITVILEDVNDNRPLFNSTNYVF 1141

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            Y  E    G+ V         I A DKD
Sbjct: 1142 YFEEEQSGGSYVGK-------INAVDKD 1162



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E    Y L V A++    +A+ S   V+V + D NDN P F   
Sbjct: 2444 INPSTGQIITSALLDRETRENYTLIVVASDGGYPRALSSSTSVLVAVADVNDNPPKFQHH 2503

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y  +V      G+ V         +   D D+ +NA L
Sbjct: 2504 PYVTHVPSPTTSGSFV-------FAVTVTDADAGSNAEL 2535



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T+  LDYE  + Y+L++ A N+   +  +  SV + +   N+  P F    
Sbjct: 3277 IDPNTGTITTQGFLDYETKQSYHLTIKAFNVPDEERCSFASVNIQLEGTNEYVPRFVSKL 3336

Query: 73   YTGYVSEAAPIGALV 87
            Y   VSEAA  G +V
Sbjct: 3337 YYFEVSEAASEGTIV 3351



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD EA   Y L+V AT+        S  V+V +LD NDN P F Q  Y   + E      
Sbjct: 2146 LDREAVSNYTLTVVATDKGQPSLSSSTDVVVIVLDINDNNPLFAQKLYRVELEEN----- 2200

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
              LT T L  V+ A D D  TN 
Sbjct: 2201 -TLTGTDLIQVL-ATDGDEGTNG 2221



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   +YNLSV A +     A    S++V + D NDN P  +  
Sbjct: 3488 SINPQTGQVTVTAELDRETLPVYNLSVLAIDSGTPSATGSASLLVTLEDINDNGPTLS-- 3545

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3546 TRQGEVMENNRAGTLVMT 3563


>gi|47213035|emb|CAF95304.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2845

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--L 59
            S P  L   LKP+       L+TK  LD E+T +Y++ +TA ++       + ++H+  L
Sbjct: 2153 SVPAHLPFDLKPSPDGHSYSLVTKDYLDKESTHMYDIQITAKDLGSPALSSTKVIHVDVL 2212

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D NDN P F++  YT YV E    G+ V T       + A D DS  NA L
Sbjct: 2213 DVNDNRPLFSESPYTFYVPENNKAGSSVFT-------VSASDVDSGQNAAL 2256



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            +  L+  K LD E   ++NL +TA +  +       S++V +LD NDN P F +  Y   
Sbjct: 1191 FADLILTKALDREMQAVHNLILTAVDGGVPTRTGTASIVVRVLDVNDNAPSFDREKYVVD 1250

Query: 77   VSEAAPIGALVL 88
            V E +PIG+LVL
Sbjct: 1251 VMENSPIGSLVL 1262



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K  LDYE  ++Y + V A +         C+V+V + D NDN P     + +  +
Sbjct: 2065 GKLTVKAGLDYEEKQVYEIKVLAADKGSVSLSTHCNVVVRVEDVNDNPPEIEITSLSSSI 2124

Query: 78   SEAAPIGALV 87
             E AP G +V
Sbjct: 2125 PEDAPPGTVV 2134



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 11/78 (14%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC-------SVIVHILDRNDNTPY 67
            ++P  GVL  K+ +D E       +  A  +A  KAV         VI+ ILD NDN P 
Sbjct: 1842 VNPSDGVLSVKRRVDREEL----CAKMAPCVANLKAVVENPLEMHQVIIEILDVNDNAPK 1897

Query: 68   FTQLNYTGYVSEAAPIGA 85
            F + NYT  V E+A +G+
Sbjct: 1898 FPEENYTLEVLESAMVGS 1915



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 9/99 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            L+P  G +  ++ ++YE  +++ + V A++         C + + + D NDN P  +  +
Sbjct: 1295 LNPENGEIRVREMINYEDLKLFEMEVIASDKGPNLLSGQCKLTIQVTDMNDNHPEISIKS 1354

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +   V E   +  ++        V+   DKDS  N ++D
Sbjct: 1355 FQSPVKENIDVETVI-------AVVSVSDKDSGDNGVVD 1386



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  +PLD E    Y+++ T T+  G+  +    ++ + +LD NDN P F Q  YT 
Sbjct: 487 YYELVVSEPLDREKVPEYDITFTVTDR-GSPPLSDNETMTLELLDVNDNVPRFPQSFYTI 545

Query: 76  YVSEAAPIGALVLTNTSL 93
            V+E    GAL+ + T+ 
Sbjct: 546 RVTENNAPGALLSSLTAF 563



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
            Y  L+  +PLD E    Y+++ T T+  G+  +    ++ + +LD NDN P F Q  YT 
Sbjct: 1404 YYELVVSEPLDREKVPEYDITFTVTDR-GSPPLSDNETMTLELLDVNDNVPRFPQSFYTI 1462

Query: 76   YVSEAAPIGALVLTNTSL 93
             V+E    GAL+ + T+ 
Sbjct: 1463 RVTENNAPGALLSSLTAF 1480


>gi|432910748|ref|XP_004078505.1| PREDICTED: neural-cadherin-like [Oryzias latipes]
          Length = 3255

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            ++P  GV+ T    D E  R + LSVTAT+ A      +C + V ILD+NDN P F    
Sbjct: 1131 INPDSGVITTAVSFDRERQREFTLSVTATDQAEEPLIGICQITVLILDQNDNDPKFENSR 1190

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y  ++ E  P+G   L          A D D  +NA +
Sbjct: 1191 YQYFLREDTPVGTSFLRAA-------AHDDDQGSNAAI 1221



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   +PLDYE  + Y L + A++         V+VH+++RND  P F+Q  Y 
Sbjct: 1563 VEPEVGTIFVAQPLDYEMEQRYELRLVASDGKWENET-HVLVHMVNRNDEAPVFSQTEYH 1621

Query: 75   GYVSEAAPIGALVLTNTSLP---LVIRAEDKDSETN 107
              V+E           T LP   L + A D D E +
Sbjct: 1622 AAVTEEL---------TQLPVFILEVSATDPDQEAD 1648



 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
            PV+ +  +KP        +L  + LDYE T  + L V   N+A     +  +V +++ D 
Sbjct: 1334 PVRFY--IKPNRADGSASILVAENLDYETTSFFILRVRVQNVAAVPLASFTTVYINVTDV 1391

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALV 87
            NDN P+F    Y   V E A +G  V
Sbjct: 1392 NDNVPFFLSSTYEATVPEGAQVGTSV 1417



 Score = 40.4 bits (93), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
           L++ K LD E   IY L V        +A   + + + DRNDN P FT  N T  V E  
Sbjct: 424 LVSAKTLDREFIAIYELVVDHLPWCQKRAAV-IQIEVSDRNDNIPRFTGGNKTVEVDELT 482

Query: 82  PIGALVLTNTSLPLVIRAEDKDSETNA 108
           P+G  V           A+D D+E N 
Sbjct: 483 PLGTEVAR-------FDAKDGDAEKNG 502



 Score = 38.1 bits (87), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            LD E    Y + V A +  G     +  + +LD ND+ P FT+  Y+  V+E   + + +
Sbjct: 1799 LDREVQEKYMVVVEARDGGGLSGTGTATIMVLDVNDHPPIFTERVYSAKVTEDLEVNSEI 1858

Query: 88   LTNTSLPLVIRAEDKDSETNALL 110
                   LV+ A D D   NA++
Sbjct: 1859 -------LVVSATDGDRGENAVV 1874



 Score = 35.8 bits (81), Expect = 3.0,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATR-IYNLSVTATNM-AGAKAVCSVIVHI 58
           + +P  LF+I + +     G L   + +DYE+   +Y + V A+    G  +V  V VHI
Sbjct: 804 LVNPGNLFSINQES-----GALSLTRTVDYESGHNLYIVQVRASEPDTGLSSVAEVSVHI 858

Query: 59  LDRNDNTPYFTQLNYT-GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D ND TP F    YT   + E+   G      TSL L + A D DS  N+ L
Sbjct: 859 TDENDCTPEFLHSIYTRDNIPESIAAG------TSL-LQVLARDCDSGVNSEL 904


>gi|41281609|ref|NP_446392.1| protocadherin alpha-11 precursor [Rattus norvegicus]
 gi|40645540|dbj|BAD06377.1| cadherin-related neuronal receptor 12 [Rattus norvegicus]
 gi|50512322|gb|AAT77556.1| protocadherin alpha 12 [Rattus norvegicus]
 gi|149017278|gb|EDL76329.1| rCG49388, isoform CRA_b [Rattus norvegicus]
          Length = 950

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+    LD E    Y+L VTA +  G+ ++C   SV V + D NDN P F Q  +T 
Sbjct: 403 YYSLVLDSSLDRETVSTYDLVVTARD-GGSPSLCATASVSVEVADVNDNAPAFAQPEHTV 461

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V E  P GA + T       + AED D++ NAL+
Sbjct: 462 FVKENNPPGAHIFT-------VSAEDADAQENALV 489



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ KK LD E TR  NL +TAT+  G K        + VH+LD NDN P F  L Y   V
Sbjct: 194 LILKKTLDREKTRELNLLLTATD--GGKPELTGTVQLWVHVLDVNDNDPVFDHLEYKVRV 251

Query: 78  SEAAPIGALVL 88
            E A    LV+
Sbjct: 252 MENAAKETLVI 262



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFT 69
           G L     LDYE  + Y + V AT+      V  C V V ILD NDN+P  T
Sbjct: 299 GELRVNGTLDYEENKSYEIEVLATDKGAPPMVGHCVVFVEILDTNDNSPEVT 350



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
           ++H   G +   +PLD+E   +    V+A + AG  A+ S +   V +LD NDN P    
Sbjct: 508 SVHAESGKVFALQPLDHEELELLQFQVSAQD-AGVPALGSNVTLQVFVLDENDNAPMLLP 566

Query: 69  -TQLNYTGYVSEAAP--IGA-LVLTNTSLPLVIRAEDKDSETNALL 110
              +   G VSE  P  +G+  V+T       +RA D DS  NA L
Sbjct: 567 HGAVGPGGTVSELVPRSVGSGHVVTK------VRAVDADSGYNAWL 606


>gi|296193005|ref|XP_002744326.1| PREDICTED: protocadherin gamma-A1 [Callithrix jacchus]
          Length = 819

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+TK+ LD E    YN++VTAT+  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTKRTLDRELISGYNITVTATDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + +       +RA D DS  NA
Sbjct: 460 YIPENNPRGASIFS-------VRAHDSDSNENA 485



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  +IY++ V A + AG  A   V++ +LD NDN P  T  +    V E
Sbjct: 299 GEISNKEPLDFEEYKIYSMEVQAQDGAGLMARAKVLIKVLDVNDNAPEVTITSVATAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVLDQDSGDNG 380



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           P +  ++ + PLD E   +++L +TA++      +G   +C   + ++D NDN P FTQ 
Sbjct: 189 PQHPEMVLQSPLDREEEAVHHLILTASDGGDPVRSGTLRIC---IQVVDANDNPPAFTQA 245

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   V E   +G  +       L++ A D D   N 
Sbjct: 246 EYRISVPENVRVGTQL-------LIVNATDPDEGANG 275


>gi|327270377|ref|XP_003219966.1| PREDICTED: protocadherin gamma-B5-like [Anolis carolinensis]
          Length = 814

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT  PLD E+T  YN+++TAT+          ++ + I D NDN+P F +L YT YVSE
Sbjct: 403 LLTDGPLDRESTPEYNITITATDKGTPPLSTENTIFLKISDINDNSPTFDKLYYTAYVSE 462

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               G+ +         +RA D D E NA +
Sbjct: 463 NNLSGSSIFR-------VRATDSDLERNAQI 486



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 13/97 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  K LD+E+   +NL +TA  + G K        + + ++D NDN P FTQ  Y 
Sbjct: 191 YTKLVLNKQLDHESESSFNLILTA--LDGGKPPKTGTAKIWITVIDVNDNPPVFTQELYM 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             V E  P G+LV+        ++A DKD+ +N  ++
Sbjct: 249 VTVKENIPNGSLVVE-------VKATDKDAGSNGQIN 278



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 13/106 (12%)

Query: 3   HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           H  Q F++ +      YG +  K  LD+E    Y ++V A +  G  A  +V + +LD N
Sbjct: 287 HARQKFSLDQ------YGKIRVKDTLDFEKAEKYVITVEARDGGGLVAHANVEIKLLDEN 340

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           DN+P     + +  + E +  G LV         I   D+DS  N 
Sbjct: 341 DNSPEVILASLSSPIPEDSAAGTLV-------AFINVNDRDSGENG 379


>gi|293343043|ref|XP_001065137.2| PREDICTED: protocadherin beta-7 [Rattus norvegicus]
 gi|293354902|ref|XP_001055818.2| PREDICTED: protocadherin beta-7 [Rattus norvegicus]
 gi|149017302|gb|EDL76353.1| rCG49301 [Rattus norvegicus]
          Length = 800

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP++   Y  L+T+KPLD EA   YN+++T +++   +     ++ V + D NDN P 
Sbjct: 406 VLKPSVENFY-TLVTEKPLDREAYTEYNITITVSDLGTPRLTTQHTITVQVSDINDNAPT 464

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 465 FTQTSYTMFVRENNSPALHIG-----------TISATDSDSGSNA 498



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L  K+ L+YEA + Y++++ A +  G    C+V+V ++D NDN P F   +    + E
Sbjct: 313 GNLYLKRELNYEAIQTYSITIQARDGGGLSGKCTVVVEVMDVNDNPPEFLLSSLNSPIPE 372

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P   +         V R  D+DS  N 
Sbjct: 373 NSPEAVVA--------VFRIRDRDSGNNG 393



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L++TA +        + +V IL  D NDN+P F Q  Y     E
Sbjct: 208 LVLDKMLDREEIPEFTLTLTALDGGSPPRSGTALVRILVLDINDNSPQFVQSLYKVQSPE 267

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P+G+LV       + + A D D+ +N 
Sbjct: 268 DTPVGSLV-------VAVSARDLDTGSNG 289


>gi|397517968|ref|XP_003829175.1| PREDICTED: protocadherin gamma-B1 [Pan paniscus]
          Length = 810

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y LSV A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFVSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIGALV 87
           VSE  P GA +
Sbjct: 457 VSENNPPGASI 467



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    + L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPELLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272


>gi|308481962|ref|XP_003103185.1| CRE-CDH-3 protein [Caenorhabditis remanei]
 gi|308260290|gb|EFP04243.1| CRE-CDH-3 protein [Caenorhabditis remanei]
          Length = 3351

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 5/54 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            + P  G++ T  PLDYE T+ YNL+VTA     A   C VI+H++D ND +P F
Sbjct: 1592 ISPFDGMIFTNTPLDYETTQTYNLTVTA-----ATVTCHVIIHVIDENDESPRF 1640



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 9/104 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G +++  PLD E + +Y L + A +       A   +++H+ D NDN P F   
Sbjct: 1692 AVNSTTGDIISLAPLDREESELYELLIEAKDAGFPSLSATSKILIHVEDVNDNAPEFQLP 1751

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            +Y   + E  PIG  +L        I+A D+DSE +A L  S +
Sbjct: 1752 SYFAKIQENLPIGTKILR-------IQATDRDSEEHARLQYSLD 1788


>gi|348582898|ref|XP_003477213.1| PREDICTED: protocadherin alpha-8-like [Cavia porcellus]
          Length = 813

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 15/100 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYF 68
           ++ P  G ++T+  LD+E   +Y + V AT+     MAG    C+V+V +LD NDN P  
Sbjct: 294 SIDPGTGEIVTRGDLDFEQVSLYKIRVDATDKGHPPMAGH---CTVLVKVLDENDNVPKI 350

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           T  + +  V+E AP+G ++        ++   D+DS  NA
Sbjct: 351 TLTSVSLPVAEDAPVGTVI-------ALLSVSDRDSGANA 383



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E+   Y L  TA +       A  SV V + D NDN P F Q  YT +
Sbjct: 404 YYSLVLDSTLNRESISGYALVATARDGGSPPLWASASVSVEVADVNDNAPLFAQPEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P GA + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGAHIFT-------VCARDADAQENALV 490



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ +K LD E    ++L + AT+    +   SV  ++ +LD NDN P F Q  Y   + E
Sbjct: 194 LVLRKSLDREDAPEHHLLLMATDGGKPELTGSVQLLITVLDVNDNAPAFHQSEYEVSILE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            + IG  ++        + A D+D  TNA +  S N
Sbjct: 254 NSDIGTTLMR-------LNASDRDEGTNAAISYSFN 282



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPY--- 67
           ++H   G +   +PLD+E   +    V+A + +G  A+ S +   V +LD NDN P+   
Sbjct: 509 SVHAESGKVFALQPLDHEELELLQFQVSARD-SGVPALGSNVTLQVFVLDENDNAPHLLA 567

Query: 68  -FTQL---NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +TQ    + +  VS +   G ++         +RA D DS  NA L
Sbjct: 568 PWTQRTMDSVSELVSRSVSAGYVIAK-------VRAVDSDSGYNAWL 607


>gi|120538455|gb|AAI29808.1| Protocadherin alpha 3 [Homo sapiens]
          Length = 824

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A  SV V + D NDN P F+Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383


>gi|14165410|ref|NP_113685.1| protocadherin alpha-3 isoform 2 precursor [Homo sapiens]
 gi|5457011|gb|AAD43742.1|AF152481_1 protocadherin alpha 3 short form protein [Homo sapiens]
 gi|3540167|gb|AAC34323.1| KIAA0345-like 11 [Homo sapiens]
          Length = 824

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A  SV V + D NDN P F+Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383


>gi|345311428|ref|XP_001516332.2| PREDICTED: protocadherin gamma-A10-like, partial [Ornithorhynchus
           anatinus]
          Length = 807

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E    YN++VTAT+       A   + +H+ D NDN P F Q  Y+ Y
Sbjct: 401 YLRLVTDRSLDREMVSNYNVTVTATDRGSPPLSAQTQIFLHVTDTNDNPPAFEQKAYSLY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA V         + A D DSE NA
Sbjct: 461 IPENNPRGASVYR-------VTARDPDSEENA 485



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LD+E +  Y + + + +  G +A   V+V + D NDN P  T  + T  V E +P G ++
Sbjct: 307 LDFEESEFYEMEIQSQDGGGLQARAKVLVTVGDVNDNIPDVTITSLTSSVPEDSPPGTVI 366

Query: 88  LTNTSLPLVIRAEDKDSETNALL 110
                   ++   D+DS  N L+
Sbjct: 367 -------ALLNVHDRDSGDNGLV 382



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E   +++L +TA++           V V +LD NDN P FTQ  Y   V E
Sbjct: 194 LVLERVLDREEEAVHHLVLTASDGGDPIRTGTVRVRVTVLDANDNAPVFTQSVYQVRVRE 253

Query: 80  AAPIGALVLT 89
             P+G  V+T
Sbjct: 254 DVPMGTRVVT 263


>gi|194219814|ref|XP_001502214.2| PREDICTED: protocadherin gamma-A1 [Equus caballus]
          Length = 811

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  +IY + + A + AG  A   V+V +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKIYPMEIQAQDGAGLMARAKVLVKVLDINDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P GA++        +I  +D+DS  N 
Sbjct: 359 NFPPGAVI-------ALISVQDQDSGDNG 380



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E T  YN+++TAT+  G   + +   + + ++D NDN P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELTARYNITITATDQ-GTPTLSTEMHISLQVMDINDNPPTFPQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + + T       A D DS  NA
Sbjct: 460 YILENNPRGASIFSMT-------AHDADSNDNA 485



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 16  HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQL 71
           HP    ++ + PLD E   ++ L +TA++  G   V S    + V ++D NDN P FTQ 
Sbjct: 191 HPE---MVLQSPLDREEEAVHYLLLTASD--GGNPVRSGTLRIRVQVVDANDNPPAFTQE 245

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   V E  P+G  +       L+++A D D  TN 
Sbjct: 246 QYHVSVPENVPLGTCL-------LIVKATDPDEGTNG 275


>gi|431899688|gb|ELK07642.1| Protocadherin Fat 4 [Pteropus alecto]
          Length = 2137

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++V+AT+         CSV V+++D NDN+P F   
Sbjct: 1483 AINSSTGVLTLAKALDYELCQKHEMTVSATDGGWVARTGYCSVTVNVIDVNDNSPVFLPD 1542

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 1543 EYLPTVLENAPSGTTVIH-------LNATDADSGTNAVI 1574



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  GV    + LDYE+ + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 236 LNPVTGVFNLTRVLDYESQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPVFSLNSYS 295

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E  P+G+ V       LV    D D   N+ L
Sbjct: 296 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 324



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 1068 GEIRSIRPLDREKISQYVLTIKSSDKGSPSQSTSVKVIINILDENDNAPKFSQI-FSAHV 1126

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 1127 PENSPLGYTV 1136



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
           G L   + LD E    + L++TAT+        +  VH++  D NDN P F    Y   V
Sbjct: 657 GELRVTRSLDRETKERFVLTITATDSGSPALTGTGTVHVVVDDANDNIPTFASKMYFTAV 716

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E AP G  V       L++ A D D+ TNA++
Sbjct: 717 PEDAPTGTDV-------LLVNASDADASTNAVI 742



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 1588 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKR 1647

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G LV
Sbjct: 1648 YYFEISEAAPRGTLV 1662



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 1165 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 1223

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E + IG+ V         + A D D  +N 
Sbjct: 1224 LDCPELSEIGSKVTQ-------VSATDPDEGSNG 1250



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            ++HP  G +     LD E   +YNL+V A +     A    S++V + D NDN P  T  
Sbjct: 1799 SIHPQTGQITVTAELDRETLPVYNLTVLAVDSGTPSATGSASLLVTLEDINDNGPVLTVC 1858

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV T
Sbjct: 1859 E--GEVMENKRPGTLVTT 1874



 Score = 35.0 bits (79), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
           ++P  G ++T   LD E    Y L V A++    +   +  SV+V + D NDN P F   
Sbjct: 755 INPSTGQIITSALLDRETKDNYTLVVVASDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 814

Query: 72  NYTGYVSEAAPIGALVL 88
            Y  ++      G+ V 
Sbjct: 815 PYVTHIPSTTSPGSFVF 831


>gi|410956898|ref|XP_003985073.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4 [Felis catus]
          Length = 4915

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + +++TAT+         CSV V+++D NDN+P F   
Sbjct: 3108 AINSSTGILTLAKALDYELCQKHEMTITATDGGWVARTGYCSVTVNVIDVNDNSPVFFPD 3167

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3168 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3199



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  ++LD NDN P F+  +Y+
Sbjct: 1859 LNPVTGVFNLTRALDYEAQQYYILTVRAEDGGGQFTTIRVYFNVLDVNDNPPIFSLNSYS 1918

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1919 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1947



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 22/105 (20%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + + LD E    Y L++ +++        SV  I++ILD NDN P F+Q+ ++ YV
Sbjct: 2693 GEIRSIRSLDREKISQYVLTIKSSDKGSPSQSTSVKVIINILDENDNAPRFSQI-FSAYV 2751

Query: 78   SEAAPIGALV-------------------LTNTSLPLVIRAEDKD 103
             E +P+G  V                   +T+TSLP  I     D
Sbjct: 2752 PENSPLGYTVTRVTTSDEDIGVNAISRYSITDTSLPFTINPSTGD 2796



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 11/86 (12%)

Query: 28   LDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LDYEAT  Y+L + A + +GA    + C++ + ILD NDNTP F +      V E   IG
Sbjct: 1273 LDYEATPAYSLVIQAVD-SGAISLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIG 1331

Query: 85   ALVLTNTSLPLVIRAEDKDSETNALL 110
             LV +       + A D DS  NA L
Sbjct: 1332 ELVSS-------VTATDSDSGDNADL 1350



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTVTSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDMNDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 694 YFAHIQENEPGGSYITT 710



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 27   PLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            PLD  A   Y + + A++M   +   S I  V++ D NDN P F QL+Y   +SE+ P+ 
Sbjct: 954  PLDVHAGS-YQIEIVASDMGVPQLSSSFILTVYVHDVNDNPPVFDQLSYEVTLSESEPVN 1012

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
            +           ++A DKDS  N 
Sbjct: 1013 SRFFK-------VQAFDKDSGANG 1029



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3213 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3272

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3273 YYFEISEAAPKGTIV 3287



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2282 GELQVTQSLDRETKEHFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKMYFTT 2340

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2341 IPEDAPTGTDV-------LLVNASDADASTNAVI 2367



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAAVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFAQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 16/96 (16%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LD E    Y L+V AT+  G  A+ S   V+V +LD NDN P F Q  Y   ++E     
Sbjct: 2080 LDREEVSNYTLTVVATD-KGQPALSSSTEVVVMVLDINDNNPVFVQALYKVEINEN---- 2134

Query: 85   ALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
               LT T + + + A D D  TN      ++DG+ N
Sbjct: 2135 --TLTGTDI-IQVYAADGDEGTNGQVRYGIVDGNAN 2167



 Score = 38.1 bits (87), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2790 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2848

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2849 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 2875



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E    Y L V +++    +   +  SV+V + D NDN P F   
Sbjct: 2380 INPSTGQIITSALLDRETKENYTLVVVSSDAGSPEPLSSSASVLVTVTDVNDNPPRFQHH 2439

Query: 72   NYTGYVSEAAPIGALVL 88
             Y  ++    P G+ V 
Sbjct: 2440 PYVTHIPSPTPPGSFVF 2456



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V A ++     +   +   V + +LD NDN P F     T
Sbjct: 1966 GVLKVLKSLDRESQSFYNLVVQAHDLPQLPASRFTSTAHVSIILLDVNDNPPTFLSPKLT 2025

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2026 -YIPENTPIDTIVFK-------AQATDPDSGPNSYIE 2054



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 18/114 (15%)

Query: 8    FAILKP--ALHPPYGVLLTKKPLDYEA------TRIYNLSVTATNMA---GAKAVCSVIV 56
            F +++P   LH   G +   +  D E+      T +++ +V AT+       K   +V V
Sbjct: 1139 FEMVQPDFELHAISGEITNTRQFDRESLMRQRGTAVFSFTVIATDQGLPQPLKDQATVHV 1198

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++ D NDN P F +  Y   +SE+A        N +  L + A D D   N L+
Sbjct: 1199 YMKDINDNAPKFLKDFYQATISESA-------ANLTQVLRVSASDVDEGNNGLI 1245


>gi|426231059|ref|XP_004009563.1| PREDICTED: protocadherin gamma-A9 [Ovis aries]
          Length = 816

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LLT + LD E T  YN++VTAT+           +I+H++D NDN P F+Q +Y+ Y
Sbjct: 401 YYRLLTVQNLDREKTSEYNITVTATDRGTPPQSTEIHIILHVVDVNDNPPSFSQTSYSVY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  + + T       A D DS  NA
Sbjct: 461 LPENNPRGTSIFSVT-------AHDPDSNENA 485



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T K LDYE    Y++ + A +    K    V++ + D NDN P  T  +    V E
Sbjct: 299 GEISTAKSLDYEECAFYDMEIQAEDGGALKDRTKVLISVEDVNDNRPEVTITSLFSPVRE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP G ++       ++  A D+DS  N 
Sbjct: 359 DAPQGTII-------VLFNAHDRDSGKNG 380



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI----LDRNDNTPYFTQLNYTGYV 77
           L+ ++ LD E    + L + AT+  G +   S  VHI    LD NDN P F Q  Y   V
Sbjct: 194 LVLERALDREEEAAHYLVLIATD--GGEPRRSSTVHIRVTVLDTNDNAPVFAQPIYRVKV 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P G  +LT       + A D D  TN 
Sbjct: 252 PENVPPGTRLLT-------VSASDPDEGTNG 275


>gi|149017339|gb|EDL76390.1| rCG49295, isoform CRA_z [Rattus norvegicus]
          Length = 868

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+   + LD+E T  Y + V A +  G  + C VI+ +LD NDN+P  T  + + ++ E
Sbjct: 299 GVIKNNQSLDFEDTERYTMEVEAKDGGGLSSQCKVIIEVLDENDNSPEITITSLSDHILE 358

Query: 80  AAPIGALV 87
            +P G +V
Sbjct: 359 NSPPGVVV 366



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   +D E    YN+++TAT+  G  A+ S   + +HI D NDN P F + +Y  
Sbjct: 401 YYKLVTDGAIDREQNPQYNVTITATD-KGKPALSSSTTIALHITDVNDNAPAFQKSSYIV 459

Query: 76  YVSEAAPIGALV 87
           +V+E  P GA +
Sbjct: 460 HVAENNPPGASI 471



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 25  KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           +K LD E  R + L +TA +       A   + + + D NDN P F++  Y   +SE   
Sbjct: 197 EKLLDREEQRSHRLILTALDGGDPPRSATTQIEISVKDINDNPPVFSKEEYKTSISENLS 256

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNA 108
            G+ VL        + A D+D   NA
Sbjct: 257 PGSSVLQ-------VTATDEDEGVNA 275


>gi|127139976|ref|NP_001076024.1| protocadherin gamma-A1 precursor [Pan troglodytes]
 gi|62510875|sp|Q5DRC2.1|PCDG1_PANTR RecName: Full=Protocadherin gamma-A1; Short=PCDH-gamma-A1; Flags:
           Precursor
          Length = 931

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  ++Y++ V A + AG  A   V++ +LD NDNTP  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKAKVLIKVLDVNDNTPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E    YN+++TA +  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+ E  P GA + +       +RA D DS  NA +
Sbjct: 460 YIPENNPRGASIFS-------VRAHDLDSNENAQI 487



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D   N 
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275


>gi|397518044|ref|XP_003829208.1| PREDICTED: protocadherin alpha-3 [Pan paniscus]
          Length = 824

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A  SV V + D NDN P F+Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIHS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383


>gi|73949393|ref|XP_849300.1| PREDICTED: protocadherin gamma-A1 [Canis lupus familiaris]
          Length = 813

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LDYE  + Y + + A + AG  A   V+V +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEALDYEEHKSYPMEIQAQDGAGLMARAKVLVKVLDINDNAPEVTMTSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P GA++        +I   D+DSE N 
Sbjct: 359 NSPPGAII-------ALISVHDQDSEENG 380



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E T  YN++VTA +  G  A+ +   + + + D NDN P F Q +Y+ 
Sbjct: 401 YYHLVTERTLDRELTSRYNITVTAADH-GTPALYTETHISLQVTDINDNPPVFPQNSYST 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++ E  P GA   +         A D DS  NAL+
Sbjct: 460 FILENNPRGASFFSAI-------AYDADSNENALV 487



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 16/97 (16%)

Query: 16  HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI----LDRNDNTPYFTQL 71
           HP    ++ + PLD E   +++L +TA++  G   V S  +HI    +D NDN P FTQ 
Sbjct: 191 HPE---MVLQSPLDREEKAMHHLLLTASD--GGSPVRSGTLHIRVRVVDANDNPPAFTQA 245

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   V E  P+G  +       L+++A D D   N 
Sbjct: 246 QYHMSVPENVPLGTQL-------LMVKATDPDEGANG 275


>gi|291242993|ref|XP_002741390.1| PREDICTED: protocadherin 11 X-linked-like [Saccoglossus
           kowalevskii]
          Length = 1257

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G +  KK LDYE    YN++VTA +  G    CS   V + ILD+ND+ P+F+Q +YT  
Sbjct: 529 GEITAKKLLDYEERSFYNINVTACDH-GTVQQCSDATVRLFILDQNDHAPFFSQNSYTFS 587

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           VSE  P       +TS+   IRA D D+  N+ L
Sbjct: 588 VSENLP------PDTSIGK-IRASDLDTGENSRL 614



 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y + + +  LD E    YNL++ AT+ AG     S     V + D NDN P F++  YT 
Sbjct: 425 YILTVGQHSLDREIIAEYNLTLQATD-AGDDPKSSRAYFFVKLADINDNFPVFSKRVYTA 483

Query: 76  YVSEAAPIGALVLTNTSL 93
            + E   +GA +   T+L
Sbjct: 484 QIPENNIVGAYITKVTAL 501


>gi|402870674|ref|XP_003899331.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-23-like [Papio
           anubis]
          Length = 2924

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + +LD NDN P F
Sbjct: 422 KFSIHPWLGTIRTRKPLDHETQPVIVLTVQA--QLGSAPACSSTEVNITVLDVNDNHPAF 479

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N LL
Sbjct: 480 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLL 514



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L + A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 1746 GQLTVKEPKFLDFEVRNEVQLIILAES-SGHRAYCKVAVLIQDENDNSPRFEQSVYQASV 1804

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE     A V+        + A D DS  N L++ S
Sbjct: 1805 SEGEFYNAHVIQ-------VFATDLDSGLNGLIEYS 1833



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++    +   +++VH+LD NDN P F++ 
Sbjct: 1945 KFAIDQNTGVVVLVKTLDFEEVTEYKLLIQISDSV-HRTEGALVVHVLDVNDNPPVFSRD 2003

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 2004 FYQVTVPESIPVGYSVLT 2021



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V++LD ND+ P F   ++   V 
Sbjct: 2273 GVLYLVKPLDYEEMAKFTLTVQASDAEKKHFSFAVVFVNVLDDNDHAPQFMFSSFNCIVP 2332

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + + ++L
Sbjct: 2333 ENLPISSTICSISAL 2347



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 14/97 (14%)

Query: 18   PY---GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            PY   G L+    LD E +  + L + A++ +G   + S   + + +LD NDN P F+ L
Sbjct: 2163 PYKQVGYLVLLHSLDRETSANHELVILASD-SGCPPLSSTAVISIQVLDVNDNPPNFSSL 2221

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 2222 SYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 2251



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP +G L+T  PLD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 1115 IHPSFGTLVTVSPLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 1173

Query: 69   TQLNYTGYVSEAAPIGALV 87
                   +V E   +G+LV
Sbjct: 1174 MSFP-IAHVKEDVTVGSLV 1191



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCSVIVHILDRNDNTPYF 68
            + P  G +  ++ LDYE+T+ YN  V A    +        +V VH+ D NDN+P F
Sbjct: 634 GIRPYTGWIYLRRQLDYESTQTYNFRVFAWIPEDGLLQNVSATVTVHVRDENDNSPTF 691



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K LDYE T  Y   V  T+ +   A+ S +   + + D+ND++P F        
Sbjct: 1012 GDLFLSKELDYETTSHYLFRVITTDHSKNLALSSTVFLSIDVEDQNDHSPSFQDEFIVIS 1071

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD 103
            + E  PIG LV        V  A+D D
Sbjct: 1072 IEENVPIGTLV-------YVFNAKDGD 1091



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L T + LD E    + L++  +++      +V  + V +LD ND+T  F  L
Sbjct: 1430 AINEMSGELSTTRALDREQVSNFTLAILCSDLGDPPRSSVIHLQVRVLDANDHTASFPTL 1489

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   V E A +G +V        V+ A DKD   N 
Sbjct: 1490 YYQFSVREDAEVGTVV-------FVLSAVDKDEGLNG 1519



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYF 68
            GV+ TK  LDYE T  Y+L V AT+    +   + I  V + D NDN P F
Sbjct: 1850 GVITTKGILDYEHTSSYSLIVQATDKGMPRLSNTTIIKVQVTDINDNAPAF 1900



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L V A +  G  A+ S   + + +LD ND  P F Q  Y   
Sbjct: 1227 GLLTTTCPLDYEMKTQHILIVLALD-DGTPALSSSQTLTITVLDVNDEAPVFKQHLYEAS 1285

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1286 VKENQNPGEFVTR-------VEALDRDSGVNSKL 1312


>gi|296193009|ref|XP_002744358.1| PREDICTED: protocadherin gamma-B1 [Callithrix jacchus]
          Length = 872

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y L V A +     A C+V + I+D NDN P  T ++++
Sbjct: 292 LNPNTGDITTNGTLDFEETSRYVLGVEAKDGGVHTAHCNVQIEIVDENDNAPEVTLMSFS 351

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 352 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMM 380



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 399 YYKLVICGALDREQTADYNVTIIATDKGKPSLSSRTSITLHISDINDNAPVFHQASYVVH 458

Query: 77  VSEAAPIG 84
           V+E  P+G
Sbjct: 459 VAENNPLG 466



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    + L +TA  M G          + + + D NDN P F+Q  Y 
Sbjct: 189 YPELLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTQIKIRVTDANDNAPVFSQDVYR 246

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 247 VSLQENVPWGTSVLR-------VMATDQDEGINA 273


>gi|444713178|gb|ELW54086.1| Protocadherin beta-5 [Tupaia chinensis]
          Length = 492

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+E TR Y++ + AT+  G    C+V + +LD NDN P  T    TG   E
Sbjct: 298 GDVRLKRTLDFETTRYYSVEIAATDGGGLSGKCTVAIEVLDVNDNAPELTMSTLTGSTPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPETVVAVFSVSDP 372



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L+T+KPLD E+   YN+++T T++   +     S+ V + D NDN P 
Sbjct: 391 VLKPTFKNFY-TLVTQKPLDRESQAEYNITITVTDLGTPRLTTEHSITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSEAAP 82
           FTQ +YT  V E  P
Sbjct: 450 FTQASYTLLVREQPP 464



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E     +L +TA +  GA       +V V I+D NDN P F Q  Y  
Sbjct: 191 YPELVLDRALDREKQPELSLILTALD-GGAPTRSGTTTVRVEIVDINDNAPEFLQWLYEV 249

Query: 76  YVSEAAPIGALVL 88
            V E +P+ +LV+
Sbjct: 250 QVPENSPLNSLVV 262


>gi|395504792|ref|XP_003756731.1| PREDICTED: protocadherin gamma-A12 [Sarcophilus harrisii]
          Length = 847

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E    YN++VTAT+          ++  H+ D NDN P F+Q +Y+ Y
Sbjct: 400 YYSLVTNTALDREQVSEYNITVTATDFGTPPLSTDTLITLHVADVNDNPPAFSQTSYSAY 459

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + +       + A D DSE NA +
Sbjct: 460 IRENNPRGASIYS-------VTASDPDSEKNAQI 486



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   ++ L +TA++           V V +LD NDN P FTQ  Y+  
Sbjct: 191 YPELVLERALDREEEPVHRLILTASDGGDPVRSGTVRVRVIVLDANDNAPVFTQSVYSVS 250

Query: 77  VSEAAPIGALVLT 89
           + E  P+G  +LT
Sbjct: 251 IPENVPMGTWLLT 263



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T   L++E +  Y + V A + AG  A  +V+V ++D NDN P  T  +    V E
Sbjct: 298 GRISTVGNLNHEESGFYEMEVQAKDNAGLFARANVLVTVVDVNDNAPEVTIASLITSVPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +P G ++        ++   D+DS  N L+
Sbjct: 358 GSPSGTVI-------ALLNIHDQDSGENGLV 381


>gi|195120792|ref|XP_002004905.1| GI19343 [Drosophila mojavensis]
 gi|193909973|gb|EDW08840.1| GI19343 [Drosophila mojavensis]
          Length = 3570

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 11/96 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+ T+  LD EA+  Y+L VTA++MA A+     A  SV+V ILD NDN P F++  YT
Sbjct: 527 GVISTRSSLDREASDSYHLLVTASDMAAAQSERKTATASVMVKILDDNDNYPQFSERTYT 586

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E          + +    IRA D D   NA +
Sbjct: 587 VQVPEDQ------WGDDNTVAHIRATDADQGNNAAI 616



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+VTAT+  G     +V ++I D N+  P F    Y+  V E
Sbjct: 846 GLITIAQPLDYKQEKRFLLTVTATDSGGRSDTATVHINITDANNFAPIFENAPYSAPVFE 905

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            AP+G  V       LV+ A D D   NA +  S N
Sbjct: 906 DAPVGTTV-------LVVSATDSDVGINAQITYSLN 934



 Score = 43.5 bits (101), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G + T K LD E+   Y+L+  A +        +V V I   D ND+ P F    
Sbjct: 1055 IDPTSGTIRTNKGLDRESVATYHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDK 1114

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T YV E +P+G++V         I A D D   NA++
Sbjct: 1115 ITLYVPENSPVGSVVGE-------IHAHDPDEGVNAVV 1145



 Score = 43.1 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KPLDYE+ R Y L + A +           ++V+++D NDN P F    +   V E  P+
Sbjct: 642 KPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPV 701

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G  ++        ++A D D   NA
Sbjct: 702 GYNIIR-------VQAYDSDEGANA 719



 Score = 41.2 bits (95), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ T   LD E   ++   V AT+          ++ V++LD ND++P F    +   +
Sbjct: 413 GVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASI 472

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E A +G+ V+T       +RA D+D   NA ++
Sbjct: 473 REGATVGSTVIT-------LRATDQDIGKNAEIE 499



 Score = 40.8 bits (94), Expect = 0.099,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLN 72
            ++P  G ++T  PLD E T  Y L+VTA +           V + + D NDN P F    
Sbjct: 949  INPQTGAIITSAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEISVTDVNDNAPAFKNPL 1008

Query: 73   YTGYVSEAAPIGALVL 88
            Y   + E A +G  V+
Sbjct: 1009 YQASILEDALVGTSVI 1024



 Score = 38.1 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T KPLD E    +   V A +  +    A  SV++ + D NDN P F    Y   V
Sbjct: 741 GWVQTIKPLDREEQNRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPSFNPKYYEANV 800

Query: 78  SEAAPIGALVLTNTS 92
            E  P G  V T T+
Sbjct: 801 GEDQPPGTPVTTVTA 815


>gi|47213032|emb|CAF95301.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 728

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+   PLD E    Y++++TA +  G+  + S   VIVH+ D NDN P F+      
Sbjct: 377 YYSLVVDGPLDREKCSSYSITITAAD-EGSPPLSSTILVIVHVADVNDNAPAFSSPEVNI 435

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YV E +P+GAL+ T       I A D D E NA++
Sbjct: 436 YVKENSPVGALIHT-------ITATDPDKEENAIV 463



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 16/107 (14%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
           +++   G +++ +  DYE  + +   V AT+ +G   + S   + +HI D NDN P F +
Sbjct: 482 SINSETGDIVSLQSFDYEELKTFQFQVQATD-SGVPPLSSTTVIQIHISDVNDNAPLFKE 540

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDG 112
                +V E +P+G  +LT       I   D D E NA     L+DG
Sbjct: 541 PVVNVHVKENSPVGITILT-------ITTADLDREENAKVTYSLIDG 580



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+  + LD E   +  L++TA  + G K       S+ V++LD NDNTP F++  Y   V
Sbjct: 167 LVLLRSLDREKQAVLKLTLTA--LDGGKPPKTGSLSIDVNVLDANDNTPTFSKSLYKARV 224

Query: 78  SEAAPIGALVL 88
           +E AP G+ V+
Sbjct: 225 NENAPAGSPVI 235



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 14/108 (12%)

Query: 3   HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILD 60
           +P  +F I   +     G +  K  LDYE    + + V A +   +   A   ++V ++D
Sbjct: 261 NPADVFVIDAES-----GEVTVKAALDYETQSAFEVHVQARDKGFSPRSANSKLLVEVVD 315

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            NDN P     +    V E A IG+ V        ++   DKDS  N 
Sbjct: 316 VNDNAPEIAVTSLVNPVKEDAEIGSAV-------ALVTVTDKDSGKNG 356


>gi|196004380|ref|XP_002112057.1| hypothetical protein TRIADDRAFT_84 [Trichoplax adhaerens]
 gi|190585956|gb|EDV26024.1| hypothetical protein TRIADDRAFT_84, partial [Trichoplax adhaerens]
          Length = 2004

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++ T + LDYE T  Y L++ A +        +C  IV I+D +DNTP F Q+ Y   +
Sbjct: 63  GIVRTTRILDYEFTTQYWLTIQARDGGTPSRSTICRTIVQIVDVDDNTPQFEQVVYNTSL 122

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E+ P  + V        V+RA D DS +NA++
Sbjct: 123 PESLPPNSFV-------TVVRAIDIDSPSNAIV 148



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
            G +     LDYE T  + L V      G + V    +VI+ I+D NDN P FT   Y+ Y
Sbjct: 1314 GQIGVTDSLDYEVTPQFELKVIGRLDNGNQQVTTFSTVIIQIIDVNDNPPRFTLALYSQY 1373

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E  P+G  +  N      I+A D+D  ++ L+
Sbjct: 1374 VRENTPVGTPLEGNQ-----IKAIDRDGNSSTLI 1402



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T++ LD EA   Y + V AT+          +V++ + D ND++P+F    ++  +
Sbjct: 1738 GMIKTQRQLDREAVANYTVIVRATDRGQPPLSGQVNVLIQVTDSNDHSPHFKTSMFSANI 1797

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE AP+G  +L        + A D D  +N  L
Sbjct: 1798 SEHAPLGFPILR-------LEASDNDIGSNGAL 1823



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 12/93 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +  +K L+YE    Y+L++ A +    +   + IV+I   D NDN P FT+ +YT  +
Sbjct: 1529 GRITVEKYLNYEKETSYSLTLQAFD---GRFYGTTIVNISVTDVNDNRPQFTKFSYTARI 1585

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  PIG  +         I A D D     LL
Sbjct: 1586 KEDTPIGTTLFN-------IYATDPDKTVGNLL 1611



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +   K L+YE  ++Y+  VT  ++      +   V + ++D ND  P F+  NY   V
Sbjct: 889 GAVEISKQLNYENKQVYSFIVTVQDLGTPSRSSQARVTIPVIDTNDEAPKFSLENYRFSV 948

Query: 78  SEAAPIGALVLT 89
            E AP G  V T
Sbjct: 949 DENAPGGETVAT 960



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYF 68
           A+ P   V+ T++ LDYE  R +++++ A +      +++  V V + DRNDN P F
Sbjct: 371 AIDPKTAVIRTRRSLDYEQQRHHSITIRAVDGGTPSRQSLARVQVAVDDRNDNKPQF 427



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN---MAGAKAVCSVIVHILDRNDNTPYFTQ 70
           ++H   G LL+ + L+YE    Y L V A +   +    A  SV+V + D ND+ P F+Q
Sbjct: 263 SIHSQTG-LLSAQNLNYEQRSSYLLIVRAVDHGRLGYTTARASVMVTLRDVNDHPPEFSQ 321

Query: 71  LNYTGYVSEAAPIG-ALVLTNTSLP 94
            +Y   + E AP+G  L+  N + P
Sbjct: 322 TSYYTKIGEDAPVGTTLIQMNATDP 346



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEAT-RIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G + T    D E++ R Y + V AT+       +  SV V ILD ND+ P F +  YT  
Sbjct: 1424 GQIRTAVVFDRESSLRYYTVIVKATDNGKPPQSSTSSVRVQILDVNDSPPRFAEQYYTAT 1483

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V+E    G +V T       + A D+DS  N  L
Sbjct: 1484 VAENVETGYVVTT-------VTATDEDSSENTKL 1510



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-------CSVIVHILDRNDNTPYFTQLN 72
            G + T +  D E   +Y+++V AT+     ++       C+  V + D NDN+P F    
Sbjct: 1096 GAITTNREFDRERQSLYSITVRATDGGNNSSLSEVMSGFCTFNVRVTDINDNSPSFEFKQ 1155

Query: 73   YTGYVSEAAPIGALVLT 89
            Y G V    PI   ++T
Sbjct: 1156 YFGSVLLNVPINTRIIT 1172



 Score = 38.9 bits (89), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ T   LD E   +Y  S  AT+    +  +     V++ D ND  PYF    Y GY 
Sbjct: 1634 GVVKTNARLDRETKDVYEFSCVATDNGEPQLSSFADCRVYLDDVNDERPYFPDQPYIGYA 1693

Query: 78   SEAAP 82
             E AP
Sbjct: 1694 LENAP 1698



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           G++ T +PLD E    Y L V    +  A+    + + ++D NDN P FT  NY
Sbjct: 170 GIVRTLRPLDRELRSYYELRV----ITSAQTSTLLTIRVVDINDNMPEFTSSNY 219



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 34   RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN-YTGYVSEAAPIGALVLTNTS 92
            R Y+L V A++ +      +VI+ I D ND+ P FTQ N Y   ++E  P G+ VLT   
Sbjct: 1006 RSYSLRVAASD-SRLTGYTNVIIDINDINDHKPVFTQCNTYAPTIAEHQPSGSTVLT--- 1061

Query: 93   LPLVIRAEDKDSETNALL 110
                + A D D  +  L+
Sbjct: 1062 ----VTASDDDEGSFGLI 1075



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPY 67
           I +  ++P  G++     +D EA   Y L    + +       + IV +  +D NDN P 
Sbjct: 571 ITQFKINPRTGLITVGATIDREANMKYKLITQVSPITSGIDFTTRIVEVTVIDFNDNKPI 630

Query: 68  FTQ-LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           FT    Y   V+E A +G  V         +RA D D  +N+L++
Sbjct: 631 FTMPAPYEATVNENAVVGTSVYR-------LRASDADEGSNSLVE 668


>gi|149017338|gb|EDL76389.1| rCG49295, isoform CRA_y [Rattus norvegicus]
          Length = 930

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+   + LD+E T  Y + V A +  G  + C VI+ +LD NDN+P  T  + + ++ E
Sbjct: 299 GVIKNNQSLDFEDTERYTMEVEAKDGGGLSSQCKVIIEVLDENDNSPEITITSLSDHILE 358

Query: 80  AAPIGALV 87
            +P G +V
Sbjct: 359 NSPPGVVV 366



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   +D E    YN+++TAT+  G  A+ S   + +HI D NDN P F + +Y  
Sbjct: 401 YYKLVTDGAIDREQNPQYNVTITATD-KGKPALSSSTTIALHITDVNDNAPAFQKSSYIV 459

Query: 76  YVSEAAPIGALV 87
           +V+E  P GA +
Sbjct: 460 HVAENNPPGASI 471



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 25  KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           +K LD E  R + L +TA +       A   + + + D NDN P F++  Y   +SE   
Sbjct: 197 EKLLDREEQRSHRLILTALDGGDPPRSATTQIEISVKDINDNPPVFSKEEYKTSISENLS 256

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNA 108
            G+ VL        + A D+D   NA
Sbjct: 257 PGSSVLQ-------VTATDEDEGVNA 275


>gi|351705184|gb|EHB08103.1| Protocadherin beta-5 [Heterocephalus glaber]
          Length = 789

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 16/112 (14%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P +L  +LKP     Y  L+T+ PLD E +  YN+++T T++     K   ++ V + 
Sbjct: 383 SIPDKLPFVLKPTFMNFY-TLVTESPLDRETSAEYNITITVTDLGTPRLKTQHNITVQVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E          N S  L    I A D+DS TNA
Sbjct: 442 DVNDNAPTFTQTSYTLWVPE----------NNSPALHIGTISATDRDSGTNA 483



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+E TR YN+ ++AT+  G    C+V + +LD NDN P  T    +  + E
Sbjct: 298 GEIHLKRTLDFEVTRYYNVEISATDGGGLSGKCTVAIEVLDVNDNAPELTMSTLSRSIPE 357

Query: 80  AAP 82
            +P
Sbjct: 358 NSP 360



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E    ++L++ A +  +  +     ++V ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDKALDREDQPEFSLTLMALDGGVPPSSGTAIILVEVVDINDNAPEFLQSLYEVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
           + E +P+ +LV        V+ A D D+ T
Sbjct: 251 IPENSPLNSLV-------AVVSARDLDAGT 273


>gi|348582924|ref|XP_003477226.1| PREDICTED: protocadherin gamma-A7-like [Cavia porcellus]
          Length = 877

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T K LD E   +YN+++ AT+  G   + +   + +H+ D NDN P F+Q +Y+ 
Sbjct: 401 YYRLITAKHLDREKCSVYNVTLKATD-GGTPPLSTETHISIHVADTNDNPPIFSQSSYSV 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + +       + A D DSE NA
Sbjct: 460 YIPENNPRGASIFS-------VTAHDPDSEKNA 485



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L T + LDYE +  Y + V A +  G+     V++ ILD NDN P  T  + +  + E
Sbjct: 299 GELSTLEGLDYEESSFYEMEVQAQDGPGSLTKAKVLIMILDVNDNAPEVTVTSVSNSIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +   +D+DSE N 
Sbjct: 359 DTPPGTVI-------ALFYLQDRDSEKNG 380



 Score = 34.3 bits (77), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E   I++L +TA +           + V ++D ND+TP F+   Y   V E
Sbjct: 194 LVLEQVLDREEEVIHHLVLTAYDGGDPPLSGTARIQVTVVDVNDHTPVFSLPQYQVTVPE 253

Query: 80  AAPIGALVLT 89
             PIG  +LT
Sbjct: 254 NIPIGTRLLT 263


>gi|392334144|ref|XP_003753090.1| PREDICTED: protocadherin beta-13-like [Rattus norvegicus]
 gi|392354647|ref|XP_003751815.1| PREDICTED: protocadherin beta-13-like [Rattus norvegicus]
 gi|149017303|gb|EDL76354.1| protocadherin beta 16 (predicted) [Rattus norvegicus]
          Length = 800

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 52/105 (49%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
            LKP+    Y  LL++KPLD EA   YN+++T  +M     K   +  V + D NDN P 
Sbjct: 393 FLKPSGENFY-TLLSQKPLDREAVAEYNITITVADMGNPILKTQVNFTVQVSDVNDNAPI 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 452 FTQTSYTMFVRENDSPALHIGT-----------ISATDSDSGSNA 485



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +           V V +LD NDN P F QL Y   
Sbjct: 192 YPELILDRVLDREEEAELRLTLTAQDGGSPPRSGTTEVHVEVLDINDNAPQFEQLFYRVQ 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG L++T       + A DKD   N 
Sbjct: 252 IPEDSPIGFLIIT-------VSATDKDIGVNG 276



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           ++HP  G +  K+ LD+E T+ Y +++ A +       C+++  ++D ND+ P  T   +
Sbjct: 294 SIHPLTGEVRLKEHLDFEKTQSYEINIEARDAGTFSGKCTILTQVVDVNDHAPEITLSAF 353

Query: 74  TGYVSEAAP 82
           T  + E  P
Sbjct: 354 TNSILENLP 362



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDNTP+         
Sbjct: 512 GQLFALRALDYEALQTFEFRVCATD-GGSPALNSQALVRVVVLDDNDNTPFVLYPLQNAS 570

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D DS  NA L
Sbjct: 571 APYTELLPRAAEPGYLVTK-------VVAVDCDSGQNAWL 603


>gi|345328648|ref|XP_003431289.1| PREDICTED: protocadherin gamma-A10-like [Ornithorhynchus anatinus]
          Length = 870

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGY 76
           Y  ++ +KPLD E   +++L++TAT+    A++  ++I V +LD NDN P F +  Y G 
Sbjct: 191 YAEMILEKPLDREIKAMHSLTLTATDGGNPARSGTALIRVKVLDANDNAPIFDRTLYQGK 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G+ V+        ++A DKD  +N+L+
Sbjct: 251 VREDIPTGSPVVR-------VKATDKDEGSNSLV 277



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +  +  LD+EA   Y L + A +  G   +  V++ ++D NDN P  T  +  
Sbjct: 294 MDPQSGEIKVEGNLDFEAMEFYELEIQAKDSGGLSTLSKVLLEVVDVNDNAPDITVTSLF 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE +P G ++        ++   D+DS  N 
Sbjct: 354 SPLSEESPPGTVI-------ALLNVHDRDSGDNG 380



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L++   LD E    YN+++ A +  +    +  S+ + +LD NDN P+F Q +Y  Y
Sbjct: 401 YYSLVSDDLLDREVKCCYNITIRAQDGGLPPLSSSQSLELILLDENDNPPFFPQKSYVAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P+GA +         ++A D D + NA
Sbjct: 461 LMENNPVGASI-------FAVKATDPDWKENA 485


>gi|344265078|ref|XP_003404614.1| PREDICTED: protocadherin gamma-A10-like [Loxodonta africana]
          Length = 819

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
           Y  L+T + LD E    YN++VTAT+  G+  + + I   +H+ D NDN P F+ ++Y+ 
Sbjct: 401 YYRLVTDRALDRELVSSYNITVTATD-GGSPPLSTEIHLTLHVADINDNPPAFSYVSYST 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  PIG  + +       + A D DSE NA
Sbjct: 460 YIPENNPIGVSIFS-------VTAHDPDSEKNA 485



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
           +LK  L+   G +   + LDYE T  Y + + A +     A   V++ + D NDN+P  T
Sbjct: 289 LLKFQLNENTGEIKISENLDYEETDSYEIEIQAEDGGAYLATAKVLITVEDVNDNSPEVT 348

Query: 70  QLNYTGYVSEAAPIGALV 87
             +    V+E +P G ++
Sbjct: 349 TTSVFSPVTEDSPPGTVI 366



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+ ++ LD E   +++L +TA++    +    A+ SV V   D NDN P FT   Y 
Sbjct: 191 YPELVLERALDREEEAMHHLVLTASDGGDPLRSGTALVSVTV--FDTNDNAPVFTLPEYQ 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  P+G  +LT       + A D+D   N 
Sbjct: 249 VSVPENLPVGTRLLT-------VTATDRDEGANG 275


>gi|8926619|gb|AAF81914.1|AF217757_1 protocadherin 3X [Homo sapiens]
 gi|9965296|gb|AAG10030.1|AF282973_1 protocadherin-3x [Homo sapiens]
          Length = 776

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPT 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K +D+E    Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 353

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 354 SPIPENSP 361



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+G+LV T       + A D D   N 
Sbjct: 251 IPENSPLGSLVAT-------VSARDLDGGANG 275


>gi|47197329|emb|CAF92207.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 556

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 17/112 (15%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           L P+L      ++TK PLD E T  Y+L++TA + AG  ++ S   + V + D NDN+P 
Sbjct: 262 LSPSLKDKMYSIVTKSPLDREQTVKYDLTITAKD-AGQPSLSSERTITVVVSDVNDNSPE 320

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
           F+   YT Y+SEA   G  V         ++A D+D   NA      L DGS
Sbjct: 321 FSLSPYTFYISEANQPGTSV-------FAVKAFDRDENDNARVSYHILRDGS 365



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +L+  K LD E    ++L +TA  + G K       +++V +LD NDNTP F++  Y+  
Sbjct: 58  ILVLHKSLDRETAGSHSLVLTA--LDGGKPPKSGEMTILVKVLDVNDNTPVFSKDAYSVM 115

Query: 77  VSEAAPIGALVL 88
           + E AP+G+ V+
Sbjct: 116 LPENAPLGSAVV 127



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +  + P+DYE    Y + + A++      K   SVIV I D NDN P     +++ +V
Sbjct: 165 GEITVRGPIDYEQKDKYEIEIEASDKGSVPLKTEKSVIVDITDVNDNAPEIEITSFSSFV 224

Query: 78  SEAAPIGALV 87
            E +  G  V
Sbjct: 225 MEDSRPGTTV 234


>gi|268574264|ref|XP_002642109.1| C. briggsae CBR-CDH-4 protein [Caenorhabditis briggsae]
          Length = 4339

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            +L+   GVL   +PLD+E      L+V A  + +   ++V  V + ++D NDN P F + 
Sbjct: 3163 SLNAQNGVLTLAQPLDFETISTLRLTVIAKDSGIPPLESVAQVEISVMDENDNAPKFEKE 3222

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
             YTG V E + +G  VLT       ++A D DSE
Sbjct: 3223 KYTGKVKENSKVGEKVLT-------VKAVDADSE 3249



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 14   ALHPPY-----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTP 66
            ++ PP+     G +L  +P+DYE T+ YNL + A +      V   +  +H+ D NDN P
Sbjct: 3274 SVTPPFSINANGDVLINQPIDYEKTKKYNLKLIAKDGGRPPLVSEALLDIHVGDENDNAP 3333

Query: 67   YFTQLNYTGYVSEAAPIGALVL 88
             F   N T  V E   IG  VL
Sbjct: 3334 VFDDCNMTAVVQEGESIGHKVL 3355



 Score = 46.2 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 44   NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            N  G +    ++  I+  N ++P F +  Y G V E    G+ VL+N  LPLV+ A D+D
Sbjct: 1641 NGDGQQDTAKIVAKIIRTNQHSPVFRKQVYRGTVRENMEPGSSVLSNRHLPLVLLASDED 1700

Query: 104  SETNALL 110
            S +N L+
Sbjct: 1701 SGSNGLV 1707



 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 10/100 (10%)

Query: 12   KPALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            K  + P  G ++  +PLDYE A++I   +V     A  K+   +I+ + D NDN PYF +
Sbjct: 1407 KIRVEPSSGNVIVMEPLDYEVASQIR--AVVQVQQANMKSFSKLILEVTDENDNAPYFVE 1464

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 +V E   +  ++ T T+        D+D + N ++
Sbjct: 1465 HTAWAFVDENDSVDDVLATVTAF-------DRDQDDNGII 1497



 Score = 42.4 bits (98), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+   KPLD E+   +NL+  A++    +    ++V ++D+NDN P F +  Y+  V E
Sbjct: 3069 GVVTVLKPLDSESVSSFNLTAIASD-GNFEDKAIIVVTVIDKNDNAPTFEKSTYSMKVME 3127

Query: 80   AAPIG 84
            +  +G
Sbjct: 3128 SEAVG 3132



 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++ K  LD E  + + +++ A    G  A+ +V + ILD NDN P F        +SE
Sbjct: 2666 GKIIVKSSLDRERRKQWKMTIRADAAGGVHAITTVTLDILDVNDNAPAFHGDYDKLTISE 2725

Query: 80   AAPIGALV 87
             A +G  V
Sbjct: 2726 DATVGTSV 2733



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-CSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G +   + LDYE  + Y + V AT+ A  ++    +IV I D NDN P F +      VS
Sbjct: 2236 GEVSVNRHLDYEKVQKYKMLVIATSSAKQQSSEADLIVMIEDVNDNMPVFIRPEVKAEVS 2295

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            +AA  G  +        ++ A D D+ ++
Sbjct: 2296 DAAISGQFI-------TIMSATDMDTTSS 2317



 Score = 36.6 bits (83), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            A+    G +   + L+Y   ++Y + +   ++   +A  ++ + ++D ND  P+F    Y
Sbjct: 2453 AIDKKTGRIHVSRVLNYHNDKLYQIPLVVEDVTRRRAFSTLTLSVIDINDKPPFFVLPFY 2512

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN---ALLDG 112
            +  + E A  G  V       L++ A D+D       +LLDG
Sbjct: 2513 STSIPETAKEGDTV-------LMVSATDEDENDTIEYSLLDG 2547


>gi|14195605|ref|NP_066008.1| protocadherin beta-16 precursor [Homo sapiens]
 gi|308153560|sp|Q9NRJ7.3|PCDBG_HUMAN RecName: Full=Protocadherin beta-16; Short=PCDH-beta-16; AltName:
           Full=Protocadherin-3X; Flags: Precursor
 gi|13876376|gb|AAK21988.1| protocadherin beta 8a [Homo sapiens]
 gi|119582379|gb|EAW61975.1| protocadherin beta 16 [Homo sapiens]
 gi|193786434|dbj|BAG51717.1| unnamed protein product [Homo sapiens]
          Length = 776

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPT 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K +D+E    Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 353

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 354 SPIPENSP 361



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+G+LV T       + A D D   N 
Sbjct: 251 IPENSPLGSLVAT-------VSARDLDGGANG 275



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA R +   V+AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 511 GHLFALRSLDYEALREFEFRVSATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 569

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 570 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 602


>gi|426247077|ref|XP_004017313.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4 [Ovis aries]
          Length = 4968

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++V+AT+         CSV V+++D NDN+P F   
Sbjct: 3125 AINSSTGVLTLAKALDYELCQKHEMTVSATDGGWVSRTGYCSVTVNVIDVNDNSPVFLPD 3184

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3185 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3216



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1878 LNPVTGVFNLTRMLDYEAQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1937

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1938 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1966



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1351 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPTFPPG 1410

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1411 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1442



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L V +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 2710 GEIRSIRPLDREKISQYVLIVKSSDRGSPSQSTSVKVIINILDENDNAPRFSQI-FSAHV 2768

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2769 PENSPLGYTV 2778



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1260 LDYEATPAYSLVIQAVDSGAVSLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1319

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1320 LVSS-------VTATDSDSGDNADL 1337



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 621 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMVRINVSLLDINDNSPVFYPVQ 680

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 681 YFAHIQENEPGGSYITT 697



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 27   PLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            PLD  A   Y + + A++M   +   S I  V++ D NDN P F QL+Y   +SE+ P+ 
Sbjct: 941  PLDVHAGS-YQIEILASDMGVPQLSSSFILTVYVHDVNDNPPVFDQLSYEVTLSESEPVN 999

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
            +           ++A DKDS  N 
Sbjct: 1000 SRFFK-------VQAFDKDSGANG 1016



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1035 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1094

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1095 YFEEEQRPGSFV 1106



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3230 IDPNTGVVTTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3289

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3290 YYFEISEAAPKGTIV 3304



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAAVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 730 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 789

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 790 FENVALG 796



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   KPLD E+   YNL V   ++     +   +   + + +LD NDN P F     T
Sbjct: 1985 GVLKVLKPLDRESQSFYNLVVQVHDLPQLPASRFTSTAQISIILLDVNDNPPTFLSPKLT 2044

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2045 -YIPENTPIDTIVFK-------AQATDPDSGPNSYIE 2073



 Score = 37.7 bits (86), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2807 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRFSRPSYY 2865

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2866 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 2892



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+       +   V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2099 LDREEVSNYTLTVVATDKGHPSLSSSTEVVVMVLDINDNNPVFAQAMYKVEINEN----- 2153

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      ++DG+ N
Sbjct: 2154 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVDGNAN 2186



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 17/78 (21%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP-----YFT 69
           + P  G++  ++PLD+EA R Y+    A            ++ +LD NDN P     YF 
Sbjct: 298 MDPETGLITVREPLDFEARRQYSGRAEA------------LIQLLDVNDNDPVVKFRYFP 345

Query: 70  QLNYTGYVSEAAPIGALV 87
             +    V E A +G +V
Sbjct: 346 ATSRYASVDENAQVGTVV 363



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   + LD E    + L +TAT+          ++ V + D NDN P F    Y   +
Sbjct: 2301 GELQVTQSLDRETKEHFVLLITATDSGFPALTGTGTINVIVDDINDNVPTFASKMYFTTI 2360

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G  V       +++ A D D+ TNA++
Sbjct: 2361 PEDAPTGTDV-------ILVNASDIDASTNAVI 2386



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2196 GAITVAKPLDREKTPTYSLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2255

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2256 PEN--LG--TLPRTVLQVVARDDDQGSNS 2280


>gi|363746624|ref|XP_003643736.1| PREDICTED: protocadherin beta-4-like [Gallus gallus]
          Length = 811

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K PLD+E T  Y L V AT+  G  A+C V+V ++D NDN P     +++  + E
Sbjct: 293 GEIRVKTPLDFETTHKYELGVRATDGGGLSALCKVLVEVMDVNDNAPEIVVSSFSSPIPE 352

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               G +V       L +R  D+DS  N 
Sbjct: 353 NVEPGTVVAL-----LAVR--DQDSGVNG 374



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L+ ++PLD E     + ++ AT+        +  +HI  +D NDN P FT   YTG+++E
Sbjct: 188 LVLQQPLDREEQSELDFTLVATDGGSPPRSGTTQIHIIVMDVNDNAPIFTHDIYTGHIAE 247

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +AP G+LVL        + A D D  TN 
Sbjct: 248 SAPEGSLVLR-------VMATDADVGTNG 269



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
           QL   L+PA    Y  L+T   LD E    + + VTA + AG+  + S     V I D N
Sbjct: 383 QLSFALRPAFKN-YYELVTVSRLDREERAQHMVVVTAAD-AGSPPLTSTHTFSVDISDVN 440

Query: 63  DNTPYFTQLNYTGYVSE 79
           DN P F Q +YT YV E
Sbjct: 441 DNAPVFNQTSYTMYVHE 457


>gi|332234771|ref|XP_003266577.1| PREDICTED: protocadherin gamma-A1 [Nomascus leucogenys]
          Length = 823

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  +IY++ V A + AG  A   V+V++LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKIYSMEVQAQDGAGLMAKTKVLVNVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E    YN++VTAT+           + +L  D NDN+P F Q +Y+ Y
Sbjct: 401 YYRLVTERILDRELISEYNITVTATDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA + +       +RA D DS  NA
Sbjct: 461 IPENNPRGASIFS-------VRAHDLDSNENA 485



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGAHGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D   N 
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275


>gi|297461475|ref|XP_001249786.2| PREDICTED: protocadherin Fat 4 [Bos taurus]
 gi|297484612|ref|XP_002694439.1| PREDICTED: protocadherin Fat 4 [Bos taurus]
 gi|296478713|tpg|DAA20828.1| TPA: fat-like [Bos taurus]
          Length = 4981

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++V+AT+         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGVLTLAKALDYELCQKHEMTVSATDGGWVSRTGYCSVTVNVIDVNDNSPVFLPD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPVTGVFNLTRMLDYETQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPTFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT+M      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDMGSPPQSSMVRINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 694 YFAHIQENEPGGSYITT 710



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L V +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSIRPLDREKISQYVLIVKSSDRGSPSQSTSVKVIINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGAVSLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 27   PLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            PLD  A   Y + + A++M   +   S I  V++ D NDN P F QL+Y   +SE+ P+ 
Sbjct: 954  PLDVHAGS-YQIEILASDMGVPQLSSSFILTVYVHDVNDNPPVFDQLSYEVTLSESEPVN 1012

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
            +           ++A DKDS  N 
Sbjct: 1013 SRFFK-------VQAFDKDSGANG 1029



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3243 IDPNTGVVTTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPTGTIV 3317



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRPGSFV 1119



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAAVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFAQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   KPLD E+   YNL V   ++    A        + + +LD NDN P F     T
Sbjct: 1998 GVLKVLKPLDRESQSFYNLVVQVHDLPQLPASRFTSTAQISIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTIVFK-------AQATDPDSGPNSYIE 2086



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E    Y L V A++    +   +  SV+V + D NDN P F   
Sbjct: 2410 INPSTGQIITSALLDRETKENYTLVVVASDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 2469

Query: 72   NYTGYVSEAAPIGALVL 88
             Y  ++    P G+ V 
Sbjct: 2470 PYVTHIPSPTPPGSFVF 2486



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2879 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 2905



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+       +   V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGHPSLSSSTEVVVMVLDINDNNPVFAQAMYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T +  V  A D D  TN      ++DG+ N
Sbjct: 2167 -TLTGTDITQVF-AADGDEGTNGQVRYGIVDGNAN 2199



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   + LD E    + L +TAT+          ++ V + D NDN P F    Y   +
Sbjct: 2314 GELRVTQSLDRETKEHFVLLITATDSGFPALTGTGTINVIVDDINDNVPTFASKMYFTTI 2373

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G  V       +++ A D D+ TNA++
Sbjct: 2374 PEDAPTGTDV-------ILVNASDIDASTNAVI 2399



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  + I  LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYSLTVQATDRGSTPRTDTSTISIVLLDINDFVPIFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTVLQVVARDDDQGSNS 2293


>gi|119514200|gb|ABL75863.1| protocadherin 2A23 [Takifugu rubripes]
          Length = 938

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 17/113 (15%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTP 66
           IL P+L      L+TK  LD E T  Y+L++TA + AG  ++ S   + V + D NDN P
Sbjct: 397 ILSPSLQETMYSLVTKSALDREQTDKYDLTITAKD-AGQPSLSSEKTITVVVSDVNDNRP 455

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
            F+   YT Y+SEA   G  V +       ++A D+D   NA      L DGS
Sbjct: 456 EFSLSPYTFYISEANQPGTSVFS-------VKAFDRDDNDNAHVSYHILRDGS 501



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +L+ +K LD E    ++L +TA  + G K       +++V +LD NDNTP F++  Y+  
Sbjct: 194 ILVLQKSLDRETAASHSLVLTA--LDGGKPPKSGQMNILVKVLDVNDNTPVFSKDVYSVT 251

Query: 77  VSEAAPIGALVL 88
           + E AP+G+ V+
Sbjct: 252 LPENAPLGSAVV 263



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRND 63
           QLF I     +P  G +  K  +DYE    Y + + A++  +       SVI+ I+D ND
Sbjct: 292 QLFGI-----NPSTGEITVKGLIDYEQKDKYEIEIEASDKGLPPLTTEKSVIIKIIDVND 346

Query: 64  NTPYFTQLNYTGYVSEAAPIGALV 87
           NTP     +++  + E +  G  V
Sbjct: 347 NTPEIEVTSFSSSIPEDSRSGTTV 370


>gi|397517974|ref|XP_003829178.1| PREDICTED: protocadherin gamma-A1 [Pan paniscus]
          Length = 823

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  ++Y++ V A + AG  A   V++ +LD NDNTP  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKAKVLIKVLDVNDNTPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E    YN+++TA +           + +L  D NDN+P F Q +Y+ Y
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA + +       +RA D DS  NA
Sbjct: 461 IPENNPRGASIFS-------VRAHDLDSNENA 485



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIG-ALVLTNTSLP 94
           ++D NDN P FTQ  Y   V E  P+G  L++ N + P
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQLLMVNATDP 269


>gi|301604928|ref|XP_002932104.1| PREDICTED: protocadherin Fat 4 [Xenopus (Silurana) tropicalis]
          Length = 3255

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 10/109 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  GV    + LDYE  + Y L+V A +  G  +   V  +ILD NDN P F++ +Y+
Sbjct: 172 LNPVTGVFNVTRALDYELQQYYVLTVCAQDGGGQDSCVRVYFNILDVNDNPPVFSRNSYS 231

Query: 75  GYVSEAAPIGALVLT----------NTSLPLVIRAEDKDSETNALLDGS 113
             V E  P G+ +LT          N+ L   I + D   +     DG+
Sbjct: 232 ASVMENLPPGSTILTFNVTDADDGFNSKLSYTISSGDSMGQFQVSKDGT 280



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LD E    Y LSV A++       ++  VI+++LD NDN P F+Q+ ++ +V
Sbjct: 1003 GEIRNTRQLDREKASQYTLSVKASDKGSPARSSIVKVIIYVLDDNDNAPRFSQI-FSAFV 1061

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            +E A +G  V   T+        D+D+  NA+
Sbjct: 1062 AENAVLGCFVTQVTT-------SDEDAGANAI 1086



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L   K LDYE  + ++L+++A +         C V +++ D NDN P F   
Sbjct: 1418 AINASTGALSLLKNLDYELCQKHDLTISAVDGGWVAKTGYCVVTIYVKDVNDNPPIFKAD 1477

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS  NA++
Sbjct: 1478 EYFPSVMENAPSGTTVIR-------LNATDVDSAPNAVI 1509



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 14/96 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L  K PLD+E    Y L V A +M      +   + + +LD NDN P F Q       
Sbjct: 899 GQLYIKNPLDFETMPKYELWVEARDMGFPPFSSYEKLEITVLDVNDNQPQFKQ------- 951

Query: 78  SEAAPIGALVLTNTS--LPLVIRAEDKDSETNALLD 111
               P  A ++ N S    L I AEDKDS +N  ++
Sbjct: 952 ---DPFIAEIIENLSPRKILTISAEDKDSGSNGQVE 984



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T+  LDYE  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 1523 IDPNTGIITTQGFLDYETKQHYHLTVKAFNVPDEERCSFVTVTVQLEGANEYVPRFVSKL 1582

Query: 73   YTGYVSEAAPIGALV 87
            Y   VSEAAP G +V
Sbjct: 1583 YYFEVSEAAPKGTVV 1597



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
           G L   K LD E    Y+L +TAT+ AG  A+    ++ + + D NDN P F   ++   
Sbjct: 595 GQLSLIKSLDREVKEWYSLLITATD-AGFPALTGTGTISIQVEDINDNKPTFALNHHFIT 653

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E AP G  +       L++   D D+  N ++
Sbjct: 654 IPEDAPTGTDI-------LMVNCSDSDAGQNGVI 680



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
           ++P  G +++   LD EA   Y L V AT+       +  +V V+I D NDN P F    
Sbjct: 691 INPSTGQIISSSLLDREAKDHYTLLVIATDGGSPPLTSTTNVTVNIRDVNDNPPRFLHHP 750

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y  ++      G+ V         +   D+D  +NA L
Sbjct: 751 YVTHIPSPTTAGSFV-------FAVTVTDEDIGSNAEL 781



 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y L++ A +        S+ ++I  LD NDN+P+F+Q ++   +SE+     
Sbjct: 393 LDREDISNYTLTIIAKDKGEPSLSSSMDMNIIVLDINDNSPHFSQRHFKVEISES----- 447

Query: 86  LVLTNTSLPLVIRAEDKDSETNALL 110
             LT T L  +I A D D   N ++
Sbjct: 448 -TLTGTDLIQLI-ASDADEGINGMV 470


>gi|119514180|gb|ABL75843.1| protocadherin 2A3 [Takifugu rubripes]
          Length = 955

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           +  L+ KK LD +   ++NL +TA +  G K       SVIV +LD NDN+P F + NY 
Sbjct: 193 FAELILKKALDRDQQSVHNLILTAVD--GGKPARSGTASVIVRVLDTNDNSPTFDKSNYN 250

Query: 75  GYVSEAAPIGALVL 88
             + E +PIG+LV+
Sbjct: 251 LEIMENSPIGSLVI 264



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
           L+P  G +  K  L+YE  +IY++ V AT+  GA ++   C++ + + D NDN P  +  
Sbjct: 297 LNPSTGEITVKGLLNYEDFKIYDMEVIATD-KGANSLSGQCTIKIVVEDMNDNHPEISIK 355

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           ++   V+E   +  ++        V+   DKDS  N ++D
Sbjct: 356 SFQTPVNENIDVDTVI-------AVVSVSDKDSGDNGVVD 388



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  +PLD E    Y+++ T T+  G+  +    ++ + +LD NDN P+F Q  YT 
Sbjct: 406 YYELVVSEPLDREKVPEYDITFTVTDR-GSPPLSDNETMTLELLDINDNVPHFPQSFYTI 464

Query: 76  YVSEAAPIGALVLTNTSL 93
            V+E    GAL+ + T+ 
Sbjct: 465 RVTENNAPGALLSSLTAF 482


>gi|269914099|ref|NP_001013028.2| protocadherin beta 16 precursor [Pan troglodytes]
          Length = 776

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K +D+E    Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQLTMSALT 353

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 354 SPIPENSP 361



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 191 YPELMLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+G+LV T       + A D D   N 
Sbjct: 251 IPENSPLGSLVAT-------VSARDLDGGANG 275



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYF------TQL 71
           G L   + LDYEA + +   V AT+          +VH  +LD NDN+P+          
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEAVVHVLVLDANDNSPFVLYPLQNGSA 570

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T  V  AA  G LV         + A D DS  NA L
Sbjct: 571 PCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 602


>gi|22164112|gb|AAM93563.1| protocadherin C5 gamma C-I [Mus musculus]
 gi|148678179|gb|EDL10126.1| mCG133388, isoform CRA_i [Mus musculus]
          Length = 871

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+FTQ  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYTIELLASD-AGSPPLHTHLTLRLNISDVNDNAPHFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D   NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDEGDNARL 489



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPVDFEESNFYEIHARARDQGQPAMEGHCVIQVDVGDANDNPPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPVLESTPVGTVV-------GLFNVRDRDSGRNG 383


>gi|440902766|gb|ELR53515.1| Protocadherin Fat 4 [Bos grunniens mutus]
          Length = 4963

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++V+AT+         CSV V+++D NDN+P F   
Sbjct: 3121 AINSSTGVLTLAKALDYELCQKHEMTVSATDGGWVSRTGYCSVTVNVIDVNDNSPVFLPD 3180

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3181 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3212



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1872 LNPVTGVFNLTRMLDYEAQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1931

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1932 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1960



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1345 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPTFPPG 1404

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1405 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1436



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L V +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 2706 GEIRSIRPLDREKISQYVLIVKSSDRGSPSQSTSVKVIINILDENDNAPRFSQI-FSAHV 2764

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2765 PENSPLGYTV 2774



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 616 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMVRINVSLLDINDNSPVFYPVQ 675

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 676 YFAHIQENEPGGSYITT 692



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F    +   V E   IG 
Sbjct: 1255 LDYEATPAYSLVIQAVDSGAVSLNSTCTLNIDILDENDNTPSFKSTLFVD-VLENMRIGE 1313

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1314 LVSS-------VTATDSDSGDNADL 1331



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 27   PLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            PLD  A   Y + + A++M   +   S I  V++ D NDN P F QL+Y   +SE+ P+ 
Sbjct: 936  PLDVHAGS-YQIEILASDMGVPQLSSSFILTVYVHDVNDNPPVFDQLSYEVTLSESEPVN 994

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
            +           ++A DKDS  N 
Sbjct: 995  SRFFK-------VQAFDKDSGANG 1011



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3226 IDPNTGVVTTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3285

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3286 YYFEISEAAPTGTIV 3300



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1030 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1089

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1090 YFEEEQRPGSFV 1101



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAAVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 725 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 784

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 785 FENVALG 791



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   KPLD E+   YNL V   ++     +   +   + + +LD NDN P F     T
Sbjct: 1979 GVLKVLKPLDRESQSFYNLVVQVHDLPQLPASRFTSTAQISIILLDVNDNPPTFLSPKLT 2038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2039 -YIPENTPIDTIVFK-------AQATDPDSGPNSYIE 2067



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2803 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2861

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2862 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 2888



 Score = 37.7 bits (86), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+       +   V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2093 LDREEVSNYTLTVVATDKGHPSLSSSTEVVVMVLDINDNNPVFAQAMYKVEINEN----- 2147

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T +  V  A D D  TN      ++DG+ N
Sbjct: 2148 -TLTGTDITQVF-AADGDEGTNGQVRYGIVDGNAN 2180



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E    Y L V A++    +   +  SV+V + D NDN P F   
Sbjct: 2393 INPSTGQIITSALLDRETKENYTLVVVASDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 2452

Query: 72   NYTGYVSEAAPIGALVL 88
             Y  ++    P G+ + 
Sbjct: 2453 PYVTHIPSPTPPGSFIF 2469



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   + LD E    + L +TAT+          ++ V + D NDN P F    Y   +
Sbjct: 2295 GELRVTQSLDRETKEHFVLLITATDSGFPALTGTGTINVIVDDINDNVPTFASKMYFTTI 2354

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G  V       +++ A D D+ TNA++
Sbjct: 2355 PEDAPTGTDV-------ILVNASDIDASTNAVI 2380



 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2190 GAITVAKPLDREKTPTYSLTVQATDRGSTPRTDTSTVSIVLLDINDFVPIFELSPYSVNV 2249

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2250 PEN--LG--TLPRTVLQVVARDDDQGSNS 2274


>gi|397518012|ref|XP_003829194.1| PREDICTED: protocadherin beta-16 [Pan paniscus]
          Length = 776

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 36/68 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  ++ +D+E    Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPMTGEIRLREQVDFETVTSYEVDIKATDGGGLSGKCTLLLQVVDVNDNPPQLTMSALT 353

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 354 SPIPENSP 361



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 191 YPELMLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+G+LV T       + A D DS  N 
Sbjct: 251 IPENSPLGSLVAT-------VSARDLDSGANG 275



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYF------TQL 71
           G L   + LDYEA + +   V AT+          +VH  +LD NDN+P+          
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRGSPALSSEAVVHVVVLDANDNSPFVLYPLQNGSA 570

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T  V  AA  G LV         + A D DS  NA L
Sbjct: 571 PCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 602


>gi|326928214|ref|XP_003210276.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-10-like [Meleagris
           gallopavo]
          Length = 962

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
           + P  G +L K PLDYE   ++ L V A +  G  AV   C V+VH+LD NDN P  T  
Sbjct: 299 VEPRSGQVLLKGPLDYERASLHELYVQAKDR-GPSAVAVHCRVLVHLLDVNDNAPEVTLT 357

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + +  V E AP G ++        VI   D+DS  N 
Sbjct: 358 SVSTPVQEDAPPGTVI-------AVISVLDRDSGDNG 387



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T +PLD EA   YN+S+ A +M G+ A+    ++ V + D NDN P+F Q +Y+ 
Sbjct: 408 YYTLVTTEPLDREAVSEYNISIMARDM-GSPALLTRSTLTVPVSDVNDNAPHFLQPSYSV 466

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YV E    GA + + ++L       D D + NA L
Sbjct: 467 YVMENNAPGASICSVSAL-------DPDCQQNAYL 494



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ ++ LD E  R + L +TA +  +        V+V +LD NDN P F Q +Y   
Sbjct: 195 FAELVLERALDREQQRTHRLLLTALDGGIPRRSGTAHVLVTVLDANDNIPAFDQPSYGVS 254

Query: 77  VSEAAPIGALVL 88
           + E AP G LV+
Sbjct: 255 LPEDAPAGTLVI 266


>gi|229220875|gb|ACQ45373.1| protocadherin 15 precursor (predicted) [Dasypus novemcinctus]
          Length = 1626

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 48  MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 107

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I   DKD E
Sbjct: 108 YQGYILESAPVGATISDSLNLTTPLRIVVLDKDIE 142



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
           GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 795 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 854

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             Y G VSE A + A VL        ++A DKD+
Sbjct: 855 KIYIGGVSEDARMFASVLR-------VKATDKDT 881



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 175 QPVDREEQQYYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 226



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 574 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 633

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G L+ T       + AED D
Sbjct: 634 FSKRIYKGMVAPDAVKGTLITT-------VYAEDAD 662



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + ILD +DN+P FT   YT  V
Sbjct: 477 GSIYTAVKLNREVRDYYELIVVATDGAVHPRHSTLTLAIKILDIDDNSPVFTNSTYTVVV 536

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 537 EENLPAGTTFLQ-------IEAKDID 555


>gi|167736396|ref|NP_001108074.1| protocadherin beta-4 [Rattus norvegicus]
 gi|149017292|gb|EDL76343.1| rCG49299 [Rattus norvegicus]
          Length = 797

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E T  Y + + AT+  G     SV++ +LD NDN P  T  + T  V E
Sbjct: 298 GEIRLKKELDFEKTESYRVEIEATDGGGLSGKGSVVIEVLDVNDNAPELTISSLTSSVPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  +IR  D+DS  N 
Sbjct: 358 NAP--------ETVVAIIRIRDRDSGDNG 378



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 18/104 (17%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYF 68
           LKP+    Y  L+T++ LD E+   YN++++ ++    +     ++ V + D NDN P F
Sbjct: 392 LKPSYKNFY-TLVTERALDRESRAEYNITISVSDQGTPRLTTQHTITVQVSDINDNAPAF 450

Query: 69  TQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           TQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 451 TQTSYTMFVHENNSPALHIG-----------TISATDSDSGSNA 483



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 17/106 (16%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF-- 68
           +++P  G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+   
Sbjct: 504 SINPDNGQLFALRALDYEALQAFEFRVAATD-GGSPALSSQALVRVMVLDDNDNAPFVLY 562

Query: 69  ----TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   YT  +  AA  G L+         + A D+DS  N+ L
Sbjct: 563 PLQNASAPYTELLPRAAEPGYLITK-------VVAVDRDSGQNSWL 601


>gi|426350405|ref|XP_004042765.1| PREDICTED: protocadherin beta-5 [Gorilla gorilla gorilla]
          Length = 721

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  L+T++ LD E+   YN+++T T++     K   ++ V + D NDN P 
Sbjct: 391 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           +RA D+DS TNA
Sbjct: 450 FTQTSYTLFVRENNSPALQIGS-----------VRATDRDSGTNA 483



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T    +    E
Sbjct: 298 GEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPETVVAVFSVSDP 372



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E    ++L++TA +  GA       +V + +LD NDN P F Q  Y  
Sbjct: 191 YPELVLDKALDREERPEFSLTLTALD-GGAPPRSGTTTVRIVVLDNNDNAPEFLQSLYEV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E +P+ +LV       +V+ A D D+
Sbjct: 250 QVPENSPLNSLV-------VVVSARDLDA 271



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 559


>gi|23271279|gb|AAH36062.1| Protocadherin beta 16 [Homo sapiens]
 gi|157928918|gb|ABW03744.1| protocadherin beta 16 [synthetic construct]
          Length = 776

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPT 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 37/68 (54%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K +D+E    Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 353

Query: 75  GYVSEAAP 82
             ++E +P
Sbjct: 354 SPIAENSP 361



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+G+LV T       + A D D   N 
Sbjct: 251 IPENSPLGSLVAT-------VSARDLDGGANG 275


>gi|297676229|ref|XP_002816045.1| PREDICTED: protocadherin beta-11 [Pongo abelii]
          Length = 797

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+T  YN+++TAT++     K   +  V + 
Sbjct: 384 SIPEDLPFVLKSSVEN-YYTLETERPLDRESTAEYNITITATDLGIPRLKTEYNTTVLVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN+P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 443 DVNDNSPTFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LDYE     +  +TA +           V V ++D NDN+P F Q  Y   
Sbjct: 191 YPELVLDKALDYEERPELSFVLTALDGGSPPRSGTALVKVVVVDTNDNSPEFEQAFYEVK 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E + +G+LVLT       + A D DS TN 
Sbjct: 251 FPENSILGSLVLT-------VSARDLDSGTNG 275



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +    PLD+E    Y++ + AT+  G     +V + ++D NDN P  T  + T  + E
Sbjct: 299 GEITLTAPLDFETIESYSIIIQATDGGGLFGKSTVRIQVIDVNDNAPEITVSSITSPIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P         ++ ++   +D DS  N 
Sbjct: 359 NTP--------ETVVMIFSIQDIDSGDNG 379


>gi|195470324|ref|XP_002087458.1| GE15963 [Drosophila yakuba]
 gi|194173559|gb|EDW87170.1| GE15963 [Drosophila yakuba]
          Length = 3556

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +PLD E    Y L + A++    K+    C++ + + D+NDN P F    YTG V E
Sbjct: 1904 LSARPLDREQHSRYTLQIQASDRGQPKSRQGHCNITIFVEDQNDNAPRFKLSKYTGSVQE 1963

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+G  VL        I A D D   NA L
Sbjct: 1964 DAPLGTSVLQ-------INAVDADLGVNARL 1987



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 16/108 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   + H     L+  + LDYE+++ ++L VTAT+  G  ++ +   ++V + D N
Sbjct: 977  RLFAIDARSGH-----LILSQHLDYESSQRHSLIVTATD-GGVPSLSTNLTILVDVQDVN 1030

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            DN P F +  Y+  VSE+  I A ++        + A D D+  NA +
Sbjct: 1031 DNPPVFEKEEYSVNVSESRSINAQIIQ-------VNASDLDTGNNARI 1071



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
             + P  G +  + PLD E    Y L V AT+     A A   VIV +LD NDN P F + 
Sbjct: 1097 GIFPNSGWIYLRAPLDRETRDRYQLMVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKS 1156

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   + E    G++V        V+ A D D   NA +
Sbjct: 1157 KYEFRIEENLRRGSVV-------GVVTASDLDLGENAAI 1188



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  GV+ T+  LD+E   IY L V A++      + V  + V +LD NDN P FT  
Sbjct: 1309 SIDPSSGVIRTRVVLDHEERSIYRLGVAASDGGSPPRETVRMLRVEVLDLNDNRPTFTSS 1368

Query: 72   NYTGYVSEAAPIGALV 87
            +    V E A +G +V
Sbjct: 1369 SLVFRVREDAALGHVV 1384



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 33/126 (26%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY------ 73
            G++ +    DYE  + Y++ + A++M G KA  +V V I  R++ TP FT+  Y      
Sbjct: 2921 GLVTSAFVFDYEQRQRYDMELLASDMGGKKAGVAVRVEIESRDEFTPQFTERTYRFVLPA 2980

Query: 74   -----TGYV--------SEAAPIGALV-----------LTNTSLPLVIRAE---DKDSET 106
                  GYV        S++ P G +V           +  +S  ++I+ +   D D + 
Sbjct: 2981 AVALPQGYVVGQVTATDSDSGPDGRVVYQLSAPHSHFKVNRSSGAVLIKRKLKLDGDGDG 3040

Query: 107  NALLDG 112
            N  +DG
Sbjct: 3041 NLYMDG 3046



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G++ T+  +D E   +  L+V A +  +    +  +V+V I D NDN P F Q  
Sbjct: 556 IDPQTGLITTRSHIDCETEPVPQLTVIARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSF 615

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Y   V+E  P+G  +L        + A D D   NA+++
Sbjct: 616 YNVSVAENEPVGRCILK-------VSASDPDCGVNAMVN 647



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT--Q 70
            +HP  G + T++PLD E   +Y+L V A +       A   V +H+ D NDN P     Q
Sbjct: 1201 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1260

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V E  P G  V+        +RA D+D   NA
Sbjct: 1261 EDVVS-VREEQPPGTEVVR-------VRAVDRDHGQNA 1290



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP---------YFTQ 70
            G L+ K+ LDYE  + Y L V A++ A  +A   + V + D NDN P         YF  
Sbjct: 2485 GKLVLKRRLDYELQQEYELDVIASD-AAHEARTVLTVRVNDENDNAPVFLAQQPPAYFAV 2543

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            L     +SE+  +   +LT       + A D DSE N
Sbjct: 2544 LPAISEISESLSVDFELLT-------VNATDADSEGN 2573



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 27  PLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           PLD E    Y LSV AT+       A  S+ + I D NDN P F Q  Y   V E A  G
Sbjct: 461 PLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANVMEVADPG 520

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + A D+D   N+ L
Sbjct: 521 TSVLQ-------VLAHDRDEGLNSAL 539



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            GVL     LDY++  + Y L + A +    + +CS+    + + D NDN P F    Y  
Sbjct: 2810 GVLFVNNRLDYDSGAKSYELIIRACDSHHQRPLCSLQPFRLELHDENDNDPKFPLSEYVH 2869

Query: 76   YVSEAAPIGALVL 88
            +++E  P+G+ V 
Sbjct: 2870 FLAENEPVGSSVF 2882



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            +++PA     G++ T   LD E   IY L + AT+    +     ++ V I+D NDN P 
Sbjct: 2371 VIEPAFS---GIVRTNIVLDREIRDIYKLKIIATDEGVPQMTGTATIRVQIVDVNDNQPT 2427

Query: 68   FTQLNYTGYVSEAAPIGALVLT 89
            F   N    VSEA  +GA++ +
Sbjct: 2428 FPPNNLV-TVSEATELGAVITS 2448



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L  + PLD+E  + Y L V A + +       +   +V + +LD NDN P F   N +
Sbjct: 1549 GSLSLQAPLDFETVQEYLLIVQALDQSSNVTERLQTSVTVRLRVLDANDNAPQFVSPNSS 1608

Query: 75   G------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G       +S+A  IG +V         I A D+DS  N  L
Sbjct: 1609 GGKTASLSISDATRIGEVVAH-------IVAVDRDSGDNGRL 1643



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E T  Y+L + A +      +   +V + I D NDN P F Q  Y   V E A +G 
Sbjct: 244 LDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGT 303

Query: 86  LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            VL        + A D D++ N L++ + N
Sbjct: 304 SVLQ-------VYASDTDADENGLVEYAIN 326



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 6    QLFAILKPALHPPYGVLLTK-----KPLDYEATRIYNLSVTATNMAG--------AKAVC 52
            Q FAI+       + +L +K     KPLD E   +Y L +  ++  G        + +  
Sbjct: 2677 QSFAIIAGNEESTFELLQSKAIVLVKPLDRERNDLYKLRLVLSHPHGPPLTSSLNSSSGI 2736

Query: 53   SVIVHILDRNDNTPYFTQ-LNYTGYVSEAAPI 83
            SVI+ ILD NDN P F +   Y   +SE AP+
Sbjct: 2737 SVIITILDANDNFPIFDRSAKYEAEISELAPL 2768



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L+  + LD E    + L +     TATN   + A+ +V + + D NDN P + Q    
Sbjct: 1433 GNLVVARLLDREVQSEFRLEIRALDTTATNNPQSSAI-TVKIEVADVNDNAPEWPQDPID 1491

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSEA P+G ++   T       A D D+ TN  L
Sbjct: 1492 LQVSEATPVGTIIHNFT-------ATDADTGTNGDL 1520



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 14/100 (14%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYF 68
            A+    G++ T   LD E    YN  V A  M G +     A   V +++LD NDN P F
Sbjct: 2000 AIDSQSGLITTVGKLDRELQASYNFMVLA--MDGGRYEVRSATVPVQINVLDINDNRPVF 2057

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  Y G V       AL+    +L L ++A D D   NA
Sbjct: 2058 ERYPYIGQVP------ALIQPGQTL-LKVQALDADLGANA 2090


>gi|344265062|ref|XP_003404606.1| PREDICTED: protocadherin beta-16-like [Loxodonta africana]
          Length = 797

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 12/102 (11%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+TK  LD EA   YN+++T T++     K  C+++V + D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTKGALDREAKAEYNITITFTDLGTPRLKTKCNIMVLVSDVNDNAPT 450

Query: 68  FTQLNYTGYVSE-AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E  +P  AL + + S      A D+DS +NA
Sbjct: 451 FTQTSYTLFIRENNSP--ALHMGSVS------ATDRDSGSNA 484



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 41/80 (51%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +     +DYE TR Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPTTGEIQLTTQVDYETTRSYEVDIEATDGGGLSGKCTLLLQVVDVNDNAPEVTVSALT 353

Query: 75  GYVSEAAPIGALVLTNTSLP 94
             + E +P   + + + S P
Sbjct: 354 SPIPENSPETVVAVFSVSDP 373



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E    + L++TA +           V V ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDKELDREEGPEFRLTLTALDGGSPPRSGTTQVRVEVVDINDNAPEFEQALYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P G+LV+T       + A D DS  N 
Sbjct: 251 IPEDSPTGSLVVT-------VSARDLDSGVNG 275



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYEA R +   V A + AG+ A+ S   V V ++D NDN+P+  +   N +
Sbjct: 511 GHLFALRSLDYEALRAFEFRVGAID-AGSPALSSEALVRVEVVDENDNSPFVLYPLQNDS 569

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P  A      SL   + A D DS  NA L
Sbjct: 570 APCTELVPRAA---EAGSLVTKVVAVDSDSGQNAWL 602


>gi|119895604|ref|XP_001253365.1| PREDICTED: protocadherin beta-5 [Bos taurus]
          Length = 796

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+EATR YN+ + AT+  G    C+V + ++D NDN P  T       V E
Sbjct: 298 GEISLKRALDFEATRFYNVEIAATDGGGLSGKCTVAIEVVDVNDNAPELTMSRLISSVPE 357

Query: 80  AAPIGALVLTNTSLP 94
            +P   + + + S P
Sbjct: 358 NSPETVVAVFSVSDP 372



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T++ LD E    YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 391 LLKPTFKNFYS-LVTERSLDREERAGYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPT 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNT 91
           FTQ +YT +V E    A  IG++  T+T
Sbjct: 450 FTQTSYTLWVRENNSPALHIGSVSATDT 477



 Score = 35.0 bits (79), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       +V + ++D NDN P F Q  Y  
Sbjct: 191 YPELVLDKALDREKQPELSLTLTALD-GGAPPRSGTTTVRIEVVDINDNAPEFLQSVYEV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            + E +P+ +LV       + + A D D+ T
Sbjct: 250 QIPENSPLNSLV-------VAVSARDLDAGT 273


>gi|390459363|ref|XP_003732287.1| PREDICTED: protocadherin gamma-A2-like [Callithrix jacchus]
          Length = 866

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T K LD E    YN+S+ AT+  G+  + +   + +H++D NDN P F Q +Y+ 
Sbjct: 408 YYRLVTAKSLDREQMSEYNISLRATD-GGSPPLSTETHITLHVIDINDNPPTFPQFSYSA 466

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + + T       A+D DS  NA
Sbjct: 467 YIPENNPRGASIFSVT-------AQDPDSNNNA 492



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           Y  L+ ++ LD E   +++L + A++     ++G   +C   V +LD NDN P FTQ  Y
Sbjct: 194 YPELVLERALDREEEAVHHLVLVASDGGDPVLSGTSRIC---VKVLDVNDNAPVFTQPEY 250

Query: 74  TGYVSEAAPIGALVLTNTS 92
              V E  P+   +LT T+
Sbjct: 251 RVSVLENTPVDTRILTVTA 269



 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           + LDYE    Y + + A +  G  +   ++V +LD NDN P  T  + T  V E    G 
Sbjct: 312 ESLDYEDAMFYEIKIEAQDGPGLLSRAKILVTVLDVNDNAPEITITSLTSSVLEEGTAGR 371

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            +        +I   D+D+  N 
Sbjct: 372 EI-------ALINVHDRDAGQNG 387


>gi|350414007|ref|XP_003490178.1| PREDICTED: protocadherin-like wing polarity protein stan-like
           [Bombus impatiens]
          Length = 3163

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFT 69
           + P  GV+ T+ PLD E T +Y + ++ ++ A        A  +++V +LD NDN P FT
Sbjct: 425 IDPRTGVVTTRTPLDREKTEVYTVILSVSDQATPPSARKSANATLVVRVLDDNDNYPQFT 484

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNA 108
           +  Y+ ++ E        L  T+ P++  IRA D DS  NA
Sbjct: 485 ERTYSAWIPED-------LDYTANPVIARIRATDADSGNNA 518



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLDYE+TR Y + + A +  G+ A      ++VH+ D NDN P F   ++   VSE  P
Sbjct: 546 KPLDYESTRSYKIVIRAQD-GGSPARSNTTQLLVHVGDVNDNAPRFYTSHFQESVSENVP 604

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNALL 110
           IG  +L        I+A D D   NA +
Sbjct: 605 IGYSMLR-------IQAYDADEGANAQI 625



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+VTA++  G      V V++ D N+  P F    Y   + E
Sbjct: 756 GLITVAQPLDYKQEKRFVLTVTASDSGGRTDTALVYVNVSDANNFEPVFENTPYAVSLFE 815

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            APIG  V       LV+ A D D   NA +
Sbjct: 816 DAPIGTTV-------LVVSATDSDVGKNAQI 839



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T K LD E    Y  +V A +       A  +VI+ + D NDN PYF   NY   V
Sbjct: 651 GWIYTTKQLDREQCSRYQFTVIAADSGEVPKSASATVILTVTDVNDNDPYFDPKNYEAVV 710

Query: 78  SEAAPIGALVLTNTS 92
           SE  P G  V + T+
Sbjct: 711 SEDDPPGTPVTSVTA 725



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            A+    GV+ T KPLD E+  +Y L   A +        V  V + I D ND+ P F   
Sbjct: 959  AIDSSTGVIRTAKPLDRESVAMYILKAVAMDRGSPSLSTVVPVTIKIQDVNDSPPAFEND 1018

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                Y++E +PIG+ V         I A D D   NA++
Sbjct: 1019 KIVLYIAENSPIGSTVGE-------IYAHDPDEGPNAVV 1050



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G + T+  LD E+  ++   V A +          ++ V++LD ND+ P F    
Sbjct: 311 LDPVTGRVTTRARLDRESVDVHYFRVLAVDDSFPPRTGTTTLQVNVLDTNDHAPTFEWPE 370

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
               + E  P+G+ V+T       ++A D+D+  NA ++
Sbjct: 371 DEASIREGVPVGSTVVT-------VKATDQDTGRNAEVE 402



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
           ++P  G + T + LD E    Y L+VTA +  G   +   I   + + D NDN P F   
Sbjct: 856 INPQTGAITTTRTLDRELVPGYFLTVTARD-GGVPPLSDTINVEISVTDVNDNAPVFESP 914

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y G + E    G  VL        + A D D++ N 
Sbjct: 915 QYQGSIPEDVAGGTSVLR-------VSATDADTDLNG 944


>gi|195153499|ref|XP_002017663.1| GL17301 [Drosophila persimilis]
 gi|194113459|gb|EDW35502.1| GL17301 [Drosophila persimilis]
          Length = 2716

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+ T+  LD E +  Y+L VTA++MA A+     A  SV+V +LD NDN P F++  YT
Sbjct: 533 GVISTRSSLDRETSDSYHLLVTASDMAAAQSERKTATASVLVKVLDDNDNYPQFSERTYT 592

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E    G    +  +    IRA D D   NA +
Sbjct: 593 VQVPEDQWGG----SEDNTVAHIRATDADQGNNAAI 624



 Score = 52.0 bits (123), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   + LDY+  + + L+VTAT+  G     +V ++I D N+  P F    Y+  V E
Sbjct: 854 GLITIAQSLDYKQEKRFLLTVTATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFE 913

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            AP+G  V       LV+ A D D   NA +  S N
Sbjct: 914 DAPVGTTV-------LVVSATDSDVGINAQITYSLN 942



 Score = 45.8 bits (107), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G + T K LD E+  +Y+L+  A +        SV V I   D ND+ P F    
Sbjct: 1063 IDPTSGTVRTNKGLDRESVAVYHLTAIAVDKGSPPLSSSVEVQIRLEDVNDSPPTFASDK 1122

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T YV E +P+G++V         I A D D   NA++
Sbjct: 1123 ITLYVPENSPVGSVVGE-------IHAHDPDEGVNAVV 1153



 Score = 43.5 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KPLDYE+ R Y L + A +           ++V+++D NDN P F    +   V E  P+
Sbjct: 650 KPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPV 709

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G  ++        ++A D D   NA
Sbjct: 710 GYNIIR-------VQAYDSDEGPNA 727



 Score = 42.0 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            +++P  G ++T  PLD E T  Y L+VTA +  G+ ++     V + + D NDN P F  
Sbjct: 956  SINPQTGAIVTNAPLDRETTSGYLLTVTAKD-GGSPSLSDTTDVEISVTDVNDNAPVFKN 1014

Query: 71   LNYTGYVSEAAPIGALVL 88
              Y   + E A +G  V+
Sbjct: 1015 PLYQSSILEDALVGTSVI 1032



 Score = 41.6 bits (96), Expect = 0.058,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ T   LD E   ++   V AT+          ++ V++LD ND++P F    +   +
Sbjct: 419 GVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASI 478

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E A +G+ V+T       +RA D+D   NA ++
Sbjct: 479 REGATVGSTVIT-------LRATDQDIGKNAEIE 505



 Score = 37.7 bits (86), Expect = 0.92,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A+ P  G + T K LD E    +   V A +  +    A  SV++ + D NDN P F   
Sbjct: 743 AVDPRTGWVQTIKQLDREEQSRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPTFNPK 802

Query: 72  NYTGYVSEAAPIGALVLTNTS 92
            Y   V E  P G  V T T+
Sbjct: 803 YYEANVGEDQPQGTPVTTVTA 823


>gi|410913695|ref|XP_003970324.1| PREDICTED: protocadherin alpha-C2-like [Takifugu rubripes]
          Length = 792

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           +  L+ KK LD +   ++NL +TA +  G K       SVIV +LD NDN+P F + NY 
Sbjct: 177 FAELILKKALDRDQQSVHNLILTAVD--GGKPARSGTASVIVRVLDTNDNSPTFDKSNYN 234

Query: 75  GYVSEAAPIGALVL 88
             + E +PIG+LV+
Sbjct: 235 LEIMENSPIGSLVI 248



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
           L+P  G +  K  L+YE  +IY++ V AT+  GA ++   C++ + + D NDN P  +  
Sbjct: 281 LNPSTGEITVKGLLNYEDFKIYDMEVIATD-KGANSLSGQCTIKIVVEDMNDNHPEISIK 339

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           ++   V+E   +  ++        V+   DKDS  N ++D
Sbjct: 340 SFQTPVNENIDVDTVI-------AVVSVSDKDSGDNGVVD 372



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  +PLD E    Y+++ T T+  G+  +    ++ + +LD NDN P+F Q  YT 
Sbjct: 390 YYELVVSEPLDREKVPEYDITFTVTDR-GSPPLSDNETMTLELLDINDNVPHFPQSFYTI 448

Query: 76  YVSEAAPIGALV 87
            V+E    GAL+
Sbjct: 449 RVTENNAPGALL 460


>gi|332234734|ref|XP_003266559.1| PREDICTED: protocadherin beta-16 [Nomascus leucogenys]
          Length = 776

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFYS-LVTERALDREARAEYNITLTVTDMGTPRLKTQHNITVQISDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 15/95 (15%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           Y  L+  K LD E      L++TA +      +G   VC   + ++D NDN P F Q  Y
Sbjct: 191 YPELVLDKELDREEEPQLKLTLTALDGGSPSRSGTAQVC---IEVVDINDNAPEFEQPIY 247

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E +P+G+LV T       + A D DS  N 
Sbjct: 248 KAQIPENSPLGSLVAT-------VSARDLDSGANG 275



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 35/68 (51%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +   K +D+E    Y + + AT+  G    C++++ ++D NDN P  T    T
Sbjct: 294 VNPMTGEIRLSKQVDFETVTSYEVDIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 353

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 354 SPIPENSP 361



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYEA + +   V A +  G+ A+ S   V V +LD NDN+P+  +   N +
Sbjct: 511 GQLFALRSLDYEALQAFEFRVGAADR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 569

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P GA       L   + A D DS  NA L
Sbjct: 570 APCTELVPRGA---EPGYLVTKVVAVDSDSGQNAWL 602


>gi|198433098|ref|XP_002120736.1| PREDICTED: similar to FAT tumor suppressor 1 [Ciona intestinalis]
          Length = 4828

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPYFTQ 70
           ++P  G++ T++ LD  A  IY L+V ATN    +  A    +V++ I D ND+ P FT 
Sbjct: 334 INPHTGLITTQRHLDRNAKAIYTLTVAATNVSLVLGDALNTTTVVIEIEDANDHDPLFTD 393

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   + E+ P G+ V+        + AED+D+  N 
Sbjct: 394 STYKVVIPESLPAGSFVIQ-------VHAEDRDAGNNG 424



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++ P  G++ +  PLD E    Y L+V A ++AG     SV ++++D ND+ P F+   Y
Sbjct: 2856 SIDPKTGLIQSLLPLDREIKPFYTLTVQAIDLAGNNDTTSVNINVVDINDSPPEFSGNRY 2915

Query: 74   TGYVSEAAPIGAL 86
            T  +SE+  +G L
Sbjct: 2916 TITISESVDVGYL 2928



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+ T+  LD E  R +   +   +       +  C V++ I D N++ P FT  +Y+G 
Sbjct: 1448 GVIYTQGELDREVQREHIFIIEVDDQGSPFSLQGYCRVVITIGDINEHAPRFTASSYSGI 1507

Query: 77   VSEAAP---IGALVLTNTSLPLVIRAEDKDSETNALLD 111
            ++  A     GA+ + ++S+ + +RA D+D+  NA ++
Sbjct: 1508 ITVGAADQTTGAVDMKSSSV-VTVRASDQDTGMNAKIE 1544



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYV 77
            GVL+  KPLD E    Y + + A +    +   + I+H  ILD NDN P F    Y    
Sbjct: 3177 GVLVLNKPLDRETVPSYQIEIIAIDDGTMRMSTTDILHLQILDVNDNPPIFDLNQYNTEF 3236

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E A +G +VL        + A   DS  NA L
Sbjct: 3237 REDASVGLVVLQ-------VSAHSIDSGANAKL 3262



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+   K LD E T  YNL+V+ ++M      A   + + + D NDN P F Q  +   +
Sbjct: 697 GVISIVKLLDRERTSRYNLTVSVSDMGSPTKTAFTKITIIVADVNDNPPVFGQTRFKFSL 756

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E   +G ++  N      I A D D   NA
Sbjct: 757 HENVTVGFVIQQN------IWASDLDEGRNA 781



 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYF 68
           K A++   G +   + LD E    Y L+V A + AG     +  SV++H+ D NDN P F
Sbjct: 795 KFAINKTTGFIKVMESLDREDVSEYKLTVIAKD-AGEHPLSSSASVLIHVADVNDNPPRF 853

Query: 69  TQLNYTGYVSEAAPIGALVL 88
            Q  +   V+E  P+G +V 
Sbjct: 854 HQDVFRIKVTEDLPVGTVVF 873



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            A+    G++ T + LD E  R Y L++ AT+           V+V + + NDN P  TQ 
Sbjct: 1014 AIDENTGIITTSRQLDRETERFYWLTIKATDRGAIPLSGTMFVLVEVGNINDNAPIATQP 1073

Query: 72   NYTGYVSEAAPIGALVL 88
             +   + E +P+G+ V+
Sbjct: 1074 IFFASIRENSPLGSQVV 1090



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+   G L+T    D E    YNL++ A++      V +++V I D ND+ P F Q  Y 
Sbjct: 1337 LNSQDGSLVTAGYPDAEIQNFYNLTIWASD-GYNNDVANIVVRIGDLNDHRPVFDQAVYE 1395

Query: 75   GYVSEAAPIGALVLTNTS 92
              +SE   +G +V   T+
Sbjct: 1396 HTISENTTVGTMVFQVTA 1413



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVIVHILDRN 62
            P+QLF I         G + T   LD+E    Y L V A + A  A A   V + + D N
Sbjct: 2188 PLQLFDIDFIG-----GTITTMGSLDFEKRNHYQLRVRARDAASRAYADVEVTLRVTDIN 2242

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALV 87
            DN P FT+  Y+  + E   +G  V
Sbjct: 2243 DNDPIFTENVYSHTLPEYTRVGTQV 2267



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            L P  G L T + LD E T  Y+L  TA ++ G    C   VHI   D NDN P F   +
Sbjct: 3070 LDPRTGELRTARALDREITSEYSL--TAISIDGGDKQCISKVHITVEDINDNPPIFVSTS 3127

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                  E  P      TN+SL  V+ A D D   N 
Sbjct: 3128 LRHSTRENTP------TNSSLHRVV-AFDPDQGLNG 3156



 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 26   KPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            K LD E    Y L++ AT+  G     +V+ V I D NDN P  +QL Y G+V E A   
Sbjct: 2980 KSLDREDKDHYELTILATD--GLYTDTTVVHVTIGDINDNAPDCSQLEYRGFVREDAATQ 3037

Query: 85   ALVL 88
             L+L
Sbjct: 3038 TLIL 3041



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 15  LHPPYGVLLTKKPLDYEATR-IYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQ 70
           + P  G +LT K LDY+  R  Y L V AT+       K+ C V V + + NDN P F +
Sbjct: 439 IDPINGTILTTKKLDYDLMRSSYKLRVRATDSGTPFTRKSECFVKVTVSNVNDNAPMFVE 498



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNY 73
            +DYE+ + Y L+++A + +     + C+V + I+D NDN P FT  +Y
Sbjct: 3290 VDYESDQSYVLTISAADRSSNPLSSECTVRIAIIDVNDNAPVFTATSY 3337



 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
           + P  G +     LDY     YN++  A +     A C + V IL  +RN + PYF    
Sbjct: 909 VDPRTGYIRISAKLDYRVKTRYNITARARDRVYRVATCYIEVEILPVNRNLHAPYFNLPE 968

Query: 73  YTGYVSEAAPIGALV 87
               V E+A IG  V
Sbjct: 969 DKFEVLESAEIGKTV 983


>gi|149640370|ref|XP_001507525.1| PREDICTED: protocadherin beta-11-like [Ornithorhynchus anatinus]
          Length = 796

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 3/72 (4%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP     Y  L+T +PLD E+   YN+++T T+M     K   ++IV I D NDN P 
Sbjct: 392 ILKPTFENFY-TLVTDRPLDRESQSQYNVTITVTDMGSPSLKTEQNIIVLISDVNDNPPM 450

Query: 68  FTQLNYTGYVSE 79
           F Q +YT Y+ E
Sbjct: 451 FNQTSYTLYIRE 462



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +    PLD+E  + Y + V A +  G    C+V   + D NDNTP  T  +  
Sbjct: 294 INPNSGEIRVIGPLDFETKQSYEVHVQAKDGGGLSGKCTVRFQVADINDNTPELTISSVI 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E  P   + + + S        D+DS  N  +
Sbjct: 354 SPIPENDPETVVAIFSIS--------DRDSGNNGRM 381



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E     +L++TA +        +  VH+   D NDN P F+Q  Y   + E
Sbjct: 194 LVLDKALDREEQAEIHLTITALDGGTPPRSGTAKVHVFVVDVNDNAPEFSQKRYEVQIPE 253

Query: 80  AAPIGAL 86
            +P+G++
Sbjct: 254 NSPLGSV 260


>gi|410913723|ref|XP_003970338.1| PREDICTED: protocadherin Fat 1-like [Takifugu rubripes]
          Length = 1748

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 17/113 (15%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTP 66
            IL P+L      L+TK  LD E T  Y+L++TA + AG  ++ S   + V + D NDN P
Sbjct: 1337 ILSPSLQETMYSLVTKSALDREQTDKYDLTITAKD-AGQPSLSSEKTITVVVSDVNDNRP 1395

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
             F+   YT Y+SEA   G  V +       ++A D+D   NA      L DGS
Sbjct: 1396 EFSLSPYTFYISEANQPGTSVFS-------VKAFDRDDNDNAHVSYHILRDGS 1441



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 17/112 (15%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           L P+L      L+TK  LD E    Y+L++TA + AG  ++ S   + V + D NDN P 
Sbjct: 389 LTPSLKDKMFSLVTKSALDREQRDKYDLTITAKD-AGQPSLSSEKTITVVVSDVNDNRPE 447

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
           F+   YT Y+SEA   G  V +       ++A D+D   NA      L DGS
Sbjct: 448 FSLSPYTFYISEANQPGTSVFS-------VKAFDRDDNDNAHVSYHILRDGS 492



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +  K P+DYE    Y + V A++ A A   +  SV++ I+D NDN P     +++ ++
Sbjct: 292 GEITVKGPIDYEENERYEIEVEASDKASAPLTSEKSVLIKIVDVNDNVPEIEITSFSSFI 351

Query: 78  SEAAPIGALV 87
            E +  G  V
Sbjct: 352 PEDSRPGTTV 361



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            +L+ +K LD E    ++L +TA  + G K       +++V +LD NDNTP F++  Y+  
Sbjct: 1134 ILVLQKSLDRETAASHSLVLTA--LDGGKPPKSGQMNILVKVLDVNDNTPVFSKDVYSVT 1191

Query: 77   VSEAAPIGALVL 88
            + E AP+G+ V+
Sbjct: 1192 LPENAPLGSAVV 1203



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +L+ +K LD E    ++L +TA  + G K       ++++++LD NDN P F++  Y+  
Sbjct: 185 ILVVQKSLDRETAGSHSLVLTA--LDGGKPPKSGEMNILINVLDNNDNAPVFSKDVYSVM 242

Query: 77  VSEAAPIGALVL 88
           + E +PIG  V+
Sbjct: 243 LHENSPIGTTVI 254



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRND 63
            QLF I     +P  G +  K  +DYE    Y + + A++  +       SVI+ I+D ND
Sbjct: 1232 QLFGI-----NPSTGEITVKGLIDYEQKDKYEIEIEASDKGLPPLTTEKSVIIKIIDVND 1286

Query: 64   NTPYFTQLNYTGYVSEAAPIGALV 87
            NTP     +++  + E +  G  V
Sbjct: 1287 NTPEIEVTSFSSSIPEDSRSGTTV 1310


>gi|383864925|ref|XP_003707928.1| PREDICTED: LOW QUALITY PROTEIN: cadherin-related tumor
           suppressor-like [Megachile rotundata]
          Length = 5000

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L T   LD E    Y+L+V A +      V  ++V++  LD NDN P F Q +Y   ++E
Sbjct: 164 LETTGKLDREQVEFYSLNVCARDRGRPARVGFLLVNVTVLDVNDNPPIFQQSDYVVALNE 223

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +AP+G  VLT       + A DKDSE N+ L
Sbjct: 224 SAPVGTTVLT-------VHATDKDSEDNSRL 247



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G L  KKPLDYE    Y L+VT ++    +  +V S+ V ++D NDN P F    
Sbjct: 1355 VDPLTGTLYLKKPLDYEELERYTLNVTCSDGGHPRLTSVTSLTVEVIDANDNPPVFPNTA 1414

Query: 73   YTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNALL 110
                + E    G LV T    P+V I AED DS  N ++
Sbjct: 1415 IARQIRE----GILVHT----PIVTITAEDPDSNENGVV 1445



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G + T K LD E+  +Y+L++ A +        + +VHI   D NDN P F    
Sbjct: 3472 VDPQTGDIETAKQLDRESIPVYDLTIGAIDTGSPPQTGTALVHIELSDTNDNGPIFDPPE 3531

Query: 73   YTGYVSEAAPIGALVLT 89
              GYV+E  P G +V+T
Sbjct: 3532 VIGYVNENEPAGTIVMT 3548



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           + ++     LD E    YNL+V AT+       A   +++H+ D ND+ P F Q  Y+  
Sbjct: 389 FDIVYVNGRLDREEIPKYNLTVVATDKGTPPRSATAYLVIHVNDVNDHEPVFQQSEYSAV 448

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +SE +P G+ V +       I A D DS  NA +
Sbjct: 449 LSELSPTGSFVAS-------ISATDADSGLNARI 475



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G + T  PLD E T +Y+L++ A + +  +   S +   + + D NDN P F+   YT Y
Sbjct: 2450 GEVFTVVPLDREQTSVYHLTLIAQDSSPTELRASAVNLTIFVTDVNDNAPRFSSPRYTAY 2509

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V  A   G  V    ++      +D D E + ++
Sbjct: 2510 VPGATKPGDFVFGAKAM------DDDDGENSRIV 2537



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            G++   + LD E      L+V   N  G +        VIV I D ND  P F Q NY  
Sbjct: 3370 GIIRVSRRLDRETQNRVVLTVMTKNSGGIRGNDTDEAQVIVSIQDGND-PPEFLQSNYDA 3428

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             VSE A  G  VLT       +RA DKD
Sbjct: 3429 TVSEGAAHGTRVLT-------VRAVDKD 3449



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L V A +          +V+V +LD+NDN P FT+L ++  V
Sbjct: 2763 GEISTNAKLDREEIASYELIVEARDQGQPSLTGTATVLVSVLDKNDNPPQFTRL-FSVNV 2821

Query: 78   SEAAPIGALVLTNTS 92
            +E A IG  V+  TS
Sbjct: 2822 TENAEIGTFVIRITS 2836



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
            +L+P  GV      LDYE  + Y L V AT+  G  A+ S +    +++D NDN P F  
Sbjct: 1915 SLNPSTGVFTLTATLDYEQVQHYILVVQATD-GGIPALSSTVTVYCNVVDLNDNAPIF-- 1971

Query: 71   LNYTGYVSEAAPIGALVLTNTSLP---LVIRAEDKDSETNA 108
                    E  P  A ++ NT++    L + A+D DS  N 
Sbjct: 1972 --------EVGPHAADIVENTTIGTPVLSVTAQDLDSGDNG 2004



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYT 74
            P  G+L     LD E    Y L VTA +       +  +V V +LD NDN+P F    Y+
Sbjct: 2127 PVDGLLRVSGSLDRELRSNYTLEVTARDRGEPPRSSSTTVTVTVLDENDNSPIFDPRQYS 2186

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V+E A IGA VL        + A D+D   N 
Sbjct: 2187 ATVAENASIGASVLQ-------VSAMDRDEGANG 2213



 Score = 37.7 bits (86), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   +PLD E+   Y L++ A +        S IV I  LD ND++P F +  Y   V
Sbjct: 2346 GDIFLLRPLDRESVPEYTLTLVAMDTGSPPLTGSGIVRIVVLDVNDHSPEFNRQEYKATV 2405

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE +  G  V           A DKD   NA +
Sbjct: 2406 SENSVSGTWVAK-------PHATDKDEGLNAKI 2431



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            LHP  G L   + LD E+   Y L V A +      + ++ + + D NDN P F    Y+
Sbjct: 1813 LHPTTGQLTLAEALDRESREKYVLKVRADDGLQHTDI-ALTIQVTDTNDNAPMFQSSAYS 1871

Query: 75   GYVSEAAPIGALV 87
              V E  P G+ +
Sbjct: 1872 FDVPENVPRGSRI 1884



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            G L T+K LD E   +YNL +TAT+     A        V V +LD ND +P F      
Sbjct: 2025 GTLFTRKLLDREQKPLYNLLLTATDSPRPPARPLSSTVQVTVVLLDVNDMSPEFISPTKI 2084

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
              +  AA       +NT + + I+A D+D   N  ++
Sbjct: 2085 SIIENAA-------SNTVV-MAIKAVDRDEGRNGYVE 2113



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 13/79 (16%)

Query: 8    FAILKPA----LHPPYGVLLTKKPLDYEATR-------IYNLSVTATNMAGAKAVCSVIV 56
            +++L+P+    + P  G + +KK L Y+ T        +Y+L+V AT+          +V
Sbjct: 2951 YSLLQPSDLFTVDPATGDVFSKKSLRYKHTHRPNSPENLYSLTVVATDNGKPPLSSRTVV 3010

Query: 57   HI--LDRNDNTPYFTQLNY 73
            H+  +D N+N P F Q +Y
Sbjct: 3011 HVNVVDANNNAPRFEQRSY 3029



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L VTAT+       +V  V+VH++D NDN P F   ++  
Sbjct: 1038 PDGQLYVKNVLDREERDYYALEVTATDQGNPSRSSVVPVVVHVIDENDNAPEFANSSFVF 1097

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++ E  P    V         + A D+D+  NA L
Sbjct: 1098 HLRENEPPDTFVGK-------LLASDRDAGRNADL 1125



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L TK  LD E    Y + V A +       +  +V++ + D NDN+P F    Y   +
Sbjct: 605 GQLTTKIGLDRETIGEYRILVIAKDQGSPPQSSTATVVLTVQDVNDNSPVFYPWRYLMPI 664

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E AP G  V         + A D D+  NA
Sbjct: 665 PEDAPPGTSVGR-------VTATDADARENA 688


>gi|334311097|ref|XP_001377944.2| PREDICTED: protocadherin gamma-A12 [Monodelphis domestica]
          Length = 894

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E   +YN++VTAT++ G   + +   + +H+ D NDN P F+Q +Y+ 
Sbjct: 400 YYSLVTSMALDREQVSMYNITVTATDL-GTPPISTNTHITLHVADINDNPPTFSQTSYSV 458

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P G+ +        ++ A D DSE NA
Sbjct: 459 YILENNPKGSSI-------FLVTASDPDSEENA 484



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   +++L +TA++           V V +LD NDN P FTQ  Y+  
Sbjct: 190 YPELVLERALDREEEPVHHLILTASDGGNPVRSGTSRVRVTVLDANDNAPVFTQSVYSVS 249

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P+G  +L+       + A D D   N 
Sbjct: 250 IPENVPVGTWLLS-------VNATDPDEGVNG 274



 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T   L++E +  Y + V A + AG  A  +V+V ++D NDN P  T  + T  + E
Sbjct: 298 GSISTIGHLNHEESGFYEMEVQAKDNAGFFARANVLVTVVDVNDNAPEVTITSLTNSILE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G ++        ++   D+DS  N 
Sbjct: 358 NSPAGTVI-------ALLNVHDQDSGENG 379



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTP 66
           GVL      DYE  R   L VTAT+       CSV   + ILD+NDN P
Sbjct: 511 GVLYALLSFDYEKFRDLQLQVTATDSGEPPLNCSVSLTLFILDQNDNAP 559


>gi|262263230|tpg|DAA06607.1| TPA_inf: protocadherin gamma b5 isoform [Anolis carolinensis]
          Length = 940

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +KPLD E+ +  NL +TA +    +      + +++ D NDN P FTQ  Y   
Sbjct: 193 YAELVLQKPLDRESEQTINLILTALDGGEPRKSGTAQIQINVTDANDNPPIFTQEVYKIS 252

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E+AP+G+ VL        + A DKD  TNA +
Sbjct: 253 LHESAPVGSQVLQ-------VLASDKDEGTNAQI 279



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L P  G++    PLD+E T+ Y +++ A +  G    C++ + +LD NDN P  T    
Sbjct: 295 SLDPILGIISLMDPLDFEETKEYTMTIAAKDGGGLITHCNIEISVLDENDNAPEVT---- 350

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
               S  +P+    L+ T + L I   DKDS
Sbjct: 351 --LASVFSPVPENALSGTVIAL-ININDKDS 378



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  +LT+  LD E T  YN+++ AT+        + ++ + I D NDN P F + ++  Y
Sbjct: 403 YYKILTEGLLDRERTSEYNITIIATDTGSPPLSTIKTITLQISDINDNAPAFEKSSFRMY 462

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P GA + +       I+A D D  +NA +
Sbjct: 463 VPENKPSGASIFS-------IKASDPDVGSNARI 489


>gi|260832660|ref|XP_002611275.1| hypothetical protein BRAFLDRAFT_120347 [Branchiostoma floridae]
 gi|229296646|gb|EEN67285.1| hypothetical protein BRAFLDRAFT_120347 [Branchiostoma floridae]
          Length = 2655

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAK-AVCSVIVHILDRNDNTPYFTQ 70
            A++   GV+    PLDY+    +NL++ A +    GAK  + SV+++++D NDN P F  
Sbjct: 1946 AINSQSGVITVANPLDYDTVAQHNLTIRAKDSTSDGAKHTITSVLINLIDENDNPPDFPV 2005

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            L Y   V E  P+G LV T         A DKD+
Sbjct: 2006 LMYLEDVPEGRPVGTLVFT-------AEARDKDA 2032



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLN 72
           L P  G+L  ++ LD E    Y L++TAT+        S  + +H+ D NDN P F Q  
Sbjct: 888 LDPNTGLLAIERRLDRETESRYVLNITATDHGTPSRSASHLITIHVRDVNDNQPRFLQDT 947

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y   VSE    G  V+  T+L       D D+ TN +L
Sbjct: 948 YQASVSENQSPGTSVIQITAL-------DADAGTNGVL 978



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQL-NYTGY 76
           GV+ TK+PLD E T  Y+L +   +        +  +HI+  D NDN PYF+    Y G 
Sbjct: 464 GVIKTKRPLDRETTARYDLVLKVRDRGTPPRTATATLHIVVEDMNDNAPYFSHSGQYLGE 523

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  V+        + A+D D+  N  +
Sbjct: 524 VEEHQPNGTEVIR-------VLADDPDNGENGTI 550



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G ++  + +D E   +Y L V A++    +   +V V++L  D ND++P F    Y   +
Sbjct: 1847 GKIILFQAIDREEVPMYTLRVLASDRGTPERNSTVTVYVLVDDVNDHSPIFNSTQYVAQI 1906

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE A IGA V+        + A D DS  NA
Sbjct: 1907 SEEAVIGAFVVR-------VFAFDADSGPNA 1930



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAK-AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++ T + LD E   +Y+    A++    G + +   V V I D NDN P FTQ+ +   
Sbjct: 1209 GIITTTRLLDREKQSVYSFDAYASDRGPFGPRTSNVRVTVDISDVNDNAPVFTQVPFETT 1268

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +     +   V+T       + AEDKD+ +NA +
Sbjct: 1269 IERNIGVNQQVVT-------VTAEDKDTGSNAEI 1295



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 18  PYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           P G L  K  LD E    Y L V A +       A  +V V + D NDN P FTQ +Y  
Sbjct: 357 PDGWLYVKHRLDRELRDSYFLQVVARDNGSPPRNATANVRVTVTDDNDNDPRFTQESYHF 416

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            + E  P G  V T       + A D D   N  LD S
Sbjct: 417 SLVENLPTGTTVGT-------VFAVDADIGNNGDLDFS 447



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKP--LDYEATRIYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQL 71
            ++P  G++  K    LD+E  +   L VTA     +     +V V++ D NDN P F Q 
Sbjct: 1415 INPTSGLITVKDSTNLDFETAQRVRLIVTAQATTPSLYGYATVWVNLRDENDNAPRFDQD 1474

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             YT  V E    G  V+        + A D DS TN+
Sbjct: 1475 RYTTSVWEGNDRGMFVIQ-------VSATDADSGTNS 1504



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            +++ + LD E   +Y+L V A +   A   +  ++ V + D NDN P FT  +Y   + E
Sbjct: 1107 VISDQALDRETVPLYHLIVQAHDNTDAPRTSTTNITVAVSDENDNNPIFTDPSYQQTIQE 1166

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               +G+ V+        + A+D+D   N 
Sbjct: 1167 DVSVGSTVIR-------VTAQDRDEGVNG 1188



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   +PLD E+ + Y +++ A++        +V +++LD NDN P F Q  Y   ++E
Sbjct: 1630 GKVTLAQPLDRESVQSYIITIMASDEVHTDQ-TNVEINVLDENDNPPVFDQQTYQVDIAE 1688

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P    V T       + A D+D+ +NA +
Sbjct: 1689 MVPPHYSVAT-------VTATDRDAGSNAEI 1712



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +H   G++ T  PLD E    Y LSV A +      +    V +H+ D NDN P F    
Sbjct: 569 IHSQSGLITTNAPLDREQKPTYVLSVAAVDGGTPPRERTTFVHIHVTDSNDNAPVFVNST 628

Query: 73  YTGYVSEAAPIGALV 87
            +  V E    G+ +
Sbjct: 629 ISIEVEEGLEAGSTI 643



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 30/68 (44%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + T++  DYE    Y   + AT+  G      V V I   ++  P FTQ NY   V  
Sbjct: 2069 GEVRTREVFDYETQNTYGFYIRATDTGGLSTDVQVGVSIQSVDEFPPVFTQDNYIFTVIA 2128

Query: 80   AAPIGALV 87
             A +G  V
Sbjct: 2129 NADVGTFV 2136



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           A+ P  G + T+  LD+E      L++ A+  +G   V     V + ILD NDN P FT 
Sbjct: 144 AIDPTTGRIYTQLNLDHETVSSLLLNIQAS--SGNPPVYGRAQVNITILDINDNRPEFTV 201

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +  ++E    G ++        V  A+D+D+ +N L+
Sbjct: 202 ATESVAITENVSPGTII-------FVASAQDQDAGSNGLV 234


>gi|18087751|ref|NP_291061.1| protocadherin gamma subfamily C, 5 precursor [Mus musculus]
 gi|13876364|gb|AAK26102.1| protocadherin gamma C5 [Mus musculus]
 gi|22164116|gb|AAM93564.1| protocadherin gamma C-V [Mus musculus]
 gi|148678176|gb|EDL10123.1| mCG133388, isoform CRA_f [Mus musculus]
 gi|223460719|gb|AAI38679.1| Pcdhgc5 protein [Mus musculus]
 gi|223461058|gb|AAI38678.1| Protocadherin gamma subfamily C, 5 [Mus musculus]
          Length = 944

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+FTQ  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYTIELLASD-AGSPPLHTHLTLRLNISDVNDNAPHFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D   NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDEGDNARL 489



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPVDFEESNFYEIHARARDQGQPAMEGHCVIQVDVGDANDNPPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPVLESTPVGTVV-------GLFNVRDRDSGRNG 383


>gi|443684188|gb|ELT88197.1| hypothetical protein CAPTEDRAFT_144547 [Capitella teleta]
          Length = 654

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 12/101 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTAT--NMAGAKAVCSVIVHILDRNDNTPYF---T 69
           L P  G L ++  LD E   +Y+L++ AT  N     + CSV+++I+D NDN P F   T
Sbjct: 502 LDPLTGSLKSRTSLDREKQSVYHLAIIATDQNQPALSSSCSVVIYIMDENDNKPVFTFPT 561

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + N T YVS   P    +LT       ++A D+D   NA++
Sbjct: 562 ESNNTIYVSNKIP-KDYILTK------LQATDEDVSRNAMI 595



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP 66
           G +  KK LD+E + +YNL VTA ++      A  +VIVHI+D NDN P
Sbjct: 190 GEIYIKKELDHETSPVYNLLVTAQDLGPDSLPADATVIVHIIDINDNPP 238



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           +LT K LD E    YNL++   +  G+    A+  + V+I D NDN+P F Q +Y+  + 
Sbjct: 300 VLTAKVLDREMIAKYNLALICKD-GGSDPLIAIQHLQVNIDDVNDNSPIFGQTSYSATLI 358

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E + IGA V         + A DKD+  NA
Sbjct: 359 ENSYIGAFVTQ-------VNATDKDAGPNA 381



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
           L+ K+ LD E    +++ + A +  G      V V +LD ND+ P F    Y   +SE  
Sbjct: 86  LVLKRSLDREQESSFSIQIVAFDGGGETGSLEVKVTVLDSNDHDPVFVNATYEVSISEKT 145

Query: 82  PIGALVL 88
           P  ++++
Sbjct: 146 PAKSMIM 152



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G +  ++ +D+E    + L V AT+    +   S  V++ I D ND TP FT+  ++  +
Sbjct: 401 GRVTARRSMDHEEHENFQLYVNATDHGSPRRSSSALVVISIEDVNDETPTFTESLFSFSI 460

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  V         + AED+DS  N
Sbjct: 461 EENKPSGEYVGQ-------VAAEDRDSPPN 483


>gi|426231039|ref|XP_004009556.1| PREDICTED: protocadherin beta-8 [Ovis aries]
          Length = 771

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E T+ Y +S+ A++       C+V+V ++D NDN P  T   +TG + E
Sbjct: 299 GEIRLKKQLDFETTQSYEVSIEASDPGSLSGKCTVLVQVVDVNDNAPEVTMSAFTGQIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P         ++  V    D DSE N 
Sbjct: 359 NSP--------ETVVAVFSVSDLDSEENG 379



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 7/88 (7%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LK ++   Y  L+T++PLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 LLKSSMENFY-TLVTERPLDRETRAEYNITITVTDLGAPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNT 91
           FTQ +YT +V E    A  IG++  T+T
Sbjct: 451 FTQTSYTLWVRENNSPALHIGSVSATDT 478


>gi|348525438|ref|XP_003450229.1| PREDICTED: protocadherin-16-like [Oreochromis niloticus]
          Length = 3282

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 7/101 (6%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            +L+P  G L   KPLD E   I+NL+V A +  +    ++  + VH++D ND  P+F Q 
Sbjct: 1587 SLNPSTGSLSIFKPLDREEQDIFNLTVIAEDHGIPQHSSIQLLCVHVIDVNDEVPWFEQS 1646

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDG 112
             Y   +SE  P G  VLT ++  L     D+ S      DG
Sbjct: 1647 QYEVEISENQPPGTSVLTVSAADL-----DQGSNGQVTYDG 1682



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL T +PLD E    Y+L+V A +       +  +V V +LD ND++P F   +YT  +
Sbjct: 1799 GVLSTSRPLDREKRPGYSLTVIAQDQGHPPLSSTATVEVIVLDINDHSPQFQSSSYTAEI 1858

Query: 78   SEAAPIGALVL 88
             E  PIG+LVL
Sbjct: 1859 LEDVPIGSLVL 1869



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV LT  PLDYE    Y L+V +++ +  ++  ++ V + D NDN+P FTQ  Y   VSE
Sbjct: 2320 GVSLTG-PLDYEERTWYTLTVRSSD-SKHQSEANLTVLVDDVNDNSPTFTQDLYQVAVSE 2377

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P G+ V+T       + A D+DS  N  +
Sbjct: 2378 HLPAGSAVIT-------VTATDRDSGDNGKI 2401



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G ++T  PLD E T  Y   V AT+ + A    +   V ++I D NDN P+F Q      
Sbjct: 1903 GRIITASPLDRERTASYTFEVCATDSSPANPRNSTAQVTIYIQDVNDNAPFFIQDPLIVN 1962

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            VS ++      ++N  +   +RAEDKD   N 
Sbjct: 1963 VSASS------VSNRRVLATMRAEDKDFGANG 1988



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G L+  + LD+EA   YNL+V  ++    +   SV  I+ + D NDN P F++  Y+  +
Sbjct: 2538 GSLILVEKLDFEAVPSYNLTVVVSDRGIPQRSSSVPIIISVTDANDNPPVFSRTEYSVIL 2597

Query: 78   SEAAPIGALVL 88
            SE    G  +L
Sbjct: 2598 SEGTAAGTEIL 2608



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH----ILDRNDNTPYFTQLNYTG 75
            G +   +PLDYE    YNL +   + + A    S +VH    I D ND+TP F +   T 
Sbjct: 1377 GDVYLARPLDYERDSRYNLQIEVDDFSEAPP-SSTLVHLDIDIEDSNDHTPQFPEDPITI 1435

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD-SETNALL 110
             +SE+   G+ V T        +A DKD S TN+ L
Sbjct: 1436 VISESMDPGSSVYT-------FQATDKDGSGTNSKL 1464



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTP----YFTQLNY 73
           G++   KPLD+E  R++ L V A + A    V +  V +H+ D NDN P     F   + 
Sbjct: 312 GIITLNKPLDFEMRRVHELVVQAQDNATHPEVTNAFVTIHVRDYNDNQPTMTIIFLSEDG 371

Query: 74  TGYVSEAAPIGALV 87
           +  +SE A  G  V
Sbjct: 372 SPRISEGAQPGQYV 385



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 12/101 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  GV++  K LD E    Y ++V+A +  +    A  +V + + D NDN P F +L
Sbjct: 1689 SINPVSGVIMITKSLDRELQEYYTVTVSAKDGGLPPNYAKATVRIKVTDVNDNPPVFGRL 1748

Query: 72   NYTGYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNALLD 111
             Y+  V E            +LPL  +RA D+D+  N  ++
Sbjct: 1749 YYSIEVPENL---------EALPLFTLRATDQDAGDNGRIN 1780



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 15/94 (15%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y L V AT+      +A  S  + ++D NDN P F Q  Y   + E    G+
Sbjct: 430 LDREERDTYELRVMATDSGTPPLRAESSFTIQVIDINDNPPLFDQPVYRQVIPEVVFPGS 489

Query: 86  LVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
            VL        + A DKD   N       L DGS
Sbjct: 490 FVLQ-------VTARDKDQGPNGDISYSILQDGS 516



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 34/68 (50%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L  ++PL+ E    + + V AT+  G  A+  V + + D NDN P+F     T  + E
Sbjct: 2643 GALRLQRPLNSETQLSHLIVVQATDGQGHFALAPVSIEVKDINDNRPFFPLNLVTASIRE 2702

Query: 80   AAPIGALV 87
              P  ALV
Sbjct: 2703 NQPQNALV 2710



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQL 71
            + P  G L TK+  +++      L V      G     A+ +V V + D NDN P F Q 
Sbjct: 2415 IDPVNGTLFTKQKTEFDFENPSILVVIEARDQGTPSLSAIATVHVQVSDINDNAPIFHQS 2474

Query: 72   NYTGYVSEAAPIGALVL 88
             Y   VSE    G+ VL
Sbjct: 2475 EYRATVSEDGLPGSTVL 2491



 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVI--VHILDRNDNTPYFT 69
            L P  GVL   + LDYE T    L V AT+    A  +   SV   V++ D NDN P F 
Sbjct: 1481 LDPSTGVLSLGQKLDYEVTPNLILVVKATDSAPDASQRRWGSVTARVYVTDENDNPPVFI 1540

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                   V E  P+G +V       L + A D D   N 
Sbjct: 1541 SPTAVS-VMEDQPVGFVV-------LYVMARDADQGENG 1571



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            L YE T  Y+L V   +    +  A  +++VH+   ND  P F  L Y   + E  PI  
Sbjct: 959  LSYENTPRYDLQVITKDSGVPQLSATFTLVVHVQAENDQGPVFDTLTYRVELKEGTPIST 1018

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
              L        +RA ++++ T+ L 
Sbjct: 1019 RFLQ-------VRALNRETPTSGLF 1036


>gi|340723065|ref|XP_003399918.1| PREDICTED: protocadherin-like wing polarity protein stan-like
           [Bombus terrestris]
          Length = 3163

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFT 69
           + P  GV+ T+ PLD E T +Y + ++ ++ A        A  +++V +LD NDN P FT
Sbjct: 425 IDPRTGVVTTRTPLDREKTEVYTVILSVSDQATPPSARKSANATLVVRVLDDNDNYPQFT 484

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNA 108
           +  Y+ ++ E        L  T+ P++  IRA D DS  NA
Sbjct: 485 ERTYSAWIPED-------LDYTANPVIARIRATDADSGNNA 518



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLDYE+TR Y + + A +  G+ A      ++VH+ D NDN P F   ++   VSE  P
Sbjct: 546 KPLDYESTRSYKIVIRAQD-GGSPARSNTTQLLVHVGDVNDNAPRFYTSHFQESVSENVP 604

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNALL 110
           IG  +L        I+A D D   NA +
Sbjct: 605 IGYSMLR-------IQAYDADEGANAQI 625



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+VTA++  G      V V++ D N+  P F    Y   + E
Sbjct: 756 GLITVAQPLDYKQEKRFVLTVTASDSGGRTDTALVYVNVSDANNFEPVFENTPYAVSLFE 815

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            APIG  V       LV+ A D D   NA +
Sbjct: 816 DAPIGTTV-------LVVSATDSDVGKNAQI 839



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            A+    GV+ T KPLD E+  +Y L   A +        V  V + I D ND+ P F   
Sbjct: 959  AIDSSTGVIRTAKPLDRESVAMYTLKAVAMDRGSPSLSTVVPVTIKIQDVNDSPPAFEND 1018

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                Y++E +PIG+ V         I A D D   NA++
Sbjct: 1019 KIVLYIAENSPIGSTVGE-------IYAHDPDEGPNAVV 1050



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T K LD E    Y  +V A +       A  +VI+ + D NDN PYF   NY   V
Sbjct: 651 GWIYTTKQLDREQCSRYQFTVIAADSGEVPKSASATVILTVTDVNDNDPYFDPKNYEAVV 710

Query: 78  SEAAPIGALVLTNTS 92
           SE  P G  V + T+
Sbjct: 711 SEDDPPGTPVTSVTA 725



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G + T+  LD E+  ++   V A +          ++ V++LD ND+ P F    
Sbjct: 311 LDPVTGRVTTRARLDRESVDVHYFRVLAVDDSFPPRTGTTTLQVNVLDTNDHAPTFEWPE 370

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
               + E  P+G+ V+T       ++A D+D+  NA ++
Sbjct: 371 DEASIREGVPVGSTVVT-------VKATDQDAGRNAEVE 402



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 11/110 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQL 71
           ++P  G + T + LD E    Y L+VTA +  G   +   I   + + D NDN P F   
Sbjct: 856 INPQTGAITTTRTLDRELVPGYFLTVTARD-GGVPPLSDTINVEISVTDVNDNAPVFEAP 914

Query: 72  NYTGYVSEAAPIGALVL------TNTSLPLVIR-AEDKDSETNALLDGST 114
            Y G + E    G  VL       +T L   +R A D D +    +D ST
Sbjct: 915 QYQGSIPEDVAGGTSVLRVSATDADTDLNGRVRYALDDDGDGAFAIDSST 964


>gi|18087763|ref|NP_291067.1| protocadherin gamma-A6 precursor [Mus musculus]
 gi|13876338|gb|AAK26089.1| protocadherin gamma A6 [Mus musculus]
 gi|51874024|gb|AAH80852.1| Protocadherin gamma subfamily A, 6 [Mus musculus]
          Length = 932

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            L+P  G + T + LDYE +R Y L V A + +  +    V++ ILD NDN P     + 
Sbjct: 293 CLNPLTGEISTSETLDYEDSRFYELDVEARDQSDLQDRAKVLITILDMNDNAPEVVVTSG 352

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +  ++E +P G ++        + +  DKDSE N L+
Sbjct: 353 SRAIAENSPSGTVI-------ALFQVYDKDSERNGLV 382



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLN 72
           P Y  L+ +  LD E   +++L + A  M G   V      ++V ++D NDN P FTQ  
Sbjct: 189 PKYPELVLEHSLDREEEAVHHLVLVA--MDGGDPVRTGMARILVTVVDVNDNAPVFTQPI 246

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   V E  P+G  VLT       + A D+D   +A
Sbjct: 247 YRVSVPENLPVGTRVLT-------VNATDQDEGIHA 275



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E    YN++VTAT+         + +   + D NDN P F++ +Y+ Y
Sbjct: 401 YFRLVTNTELDREQVSSYNITVTATDRGTPPLSTKIFISLDVADINDNPPVFSRSSYSVY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           VSE  P G  + +       + A D DSE NA
Sbjct: 461 VSENNPKGVSIFS-------LNAVDPDSEENA 485


>gi|218505779|ref|NP_001136237.1| protocadherin-15 isoform CD1-6 precursor [Homo sapiens]
          Length = 1886

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1016 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1075

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1076 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1102



 Score = 37.7 bits (86), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 698 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 757

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 758 EENLPAGTTILQ-------IEAKDVD 776



 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 795 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 854

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 855 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 883


>gi|126290887|ref|XP_001377321.1| PREDICTED: protocadherin alpha-7-like [Monodelphis domestica]
          Length = 823

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ + P+D E+   Y L VTA  + +   ++   V V I D NDN P F Q  YT +
Sbjct: 401 YYSLVLEGPIDRESVSAYELVVTARDSGLPALRSAAKVSVGIGDVNDNAPAFEQPVYTVF 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G L+ T       + A D DS+ NAL+
Sbjct: 461 VKENNPPGCLIFT-------VSASDSDSQENALV 487



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 17/109 (15%)

Query: 7   LFAILKPALH--PPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHIL 59
           +F  ++   H  P  G++  K  +D+E  ++Y + V AT+     +AG    C V+V IL
Sbjct: 282 IFPDVEAKFHIDPVSGIIKVKGYVDFEEIKLYKIQVEATDKGVPHLAGH---CRVLVEIL 338

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDNTP     + +  V E AP G ++        +I   D+DS  N 
Sbjct: 339 DINDNTPEIVVTSLSLPVREDAPPGTVI-------ALISVSDRDSGPNG 380



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + AG   + S +   V +LD NDN P    
Sbjct: 506 SVHSESGKVYALQPLDHEELELLQFQVSARD-AGFPPLGSNVSLQVFVLDENDNAPSVLP 564

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLV---IRAEDKDSETNALL 110
            ++ G  +   P+  LV  + ++  V   IRA D DS  NA L
Sbjct: 565 -SHVGSGASGGPVNELVSQSVAVGHVVAKIRAVDGDSGYNAWL 606


>gi|218505783|ref|NP_001136239.1| protocadherin-15 isoform CD1-8 precursor [Homo sapiens]
          Length = 1915

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 303 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 362

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 363 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 397



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 481



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1050 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1110 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1136



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 792 EENLPAGTTILQ-------IEAKDVD 810



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 540 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 599

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 600 N-------LQATDREGDSITYAIENG 618



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 829 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 888

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 889 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 917


>gi|218505798|ref|NP_001136245.1| protocadherin-15 isoform CD1-10 precursor [Homo sapiens]
          Length = 1932

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 412



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 496



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1065 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1151



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 807 EENLPAGTTILQ-------IEAKDVD 825



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 555 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 614

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 615 N-------LQATDREGDSITYAIENG 633



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|395741772|ref|XP_002820972.2| PREDICTED: protocadherin-15-like [Pongo abelii]
          Length = 367

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 112 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 171

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+G  +  + +L  PL I A DKD E
Sbjct: 172 YQGYILESAPVGTTISDSLNLTSPLRIVALDKDIE 206



 Score = 40.8 bits (94), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 239 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 290


>gi|395504790|ref|XP_003756730.1| PREDICTED: protocadherin gamma-B5 [Sarcophilus harrisii]
          Length = 743

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T+  LD+E T  Y LSV A +  G  + C VI+ ILD NDN P  T  + +  ++E
Sbjct: 299 GQIKTQGHLDFENTESYTLSVGARDGGGLASECEVILEILDENDNHPEVTFTSVSNNIAE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G ++        + + ED+DS  N 
Sbjct: 359 DAVSGTVI-------ALFKTEDRDSGVNG 380



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  LLT  PLD E T  YN++VTA++        S  + +HI D NDN P F Q +Y  Y
Sbjct: 401 YYKLLTDGPLDREQTPQYNVTVTASDKGKPPLSTSKTLTLHIADVNDNPPVFLQSSYVVY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P GA + +       + A D D + N 
Sbjct: 461 VPENNPSGASITS-------VSASDADLDGNG 485



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+ +KPLD E    ++L + A +  G   V S    + +++ D NDN P F+Q  Y 
Sbjct: 191 YPELVMEKPLDREKQSSHHLVLVAVD--GGNPVLSGTAQIRINVTDANDNPPVFSQDFYK 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G+ V+        + A DKD   NA
Sbjct: 249 VRLRENLPPGSSVVR-------VLATDKDEGINA 275


>gi|166837996|gb|ABY91218.1| protocadherin delta 1 [Gallus gallus]
          Length = 962

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
           + P  G +L K PLDYE   ++ L V A +  G  AV   C V+VH+LD NDN P  T  
Sbjct: 299 VEPRSGQVLLKGPLDYERASLHELYVQAKDR-GPSAVAVHCRVLVHLLDVNDNAPEVTLT 357

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + +  V E AP G ++        VI   D+DS  N 
Sbjct: 358 SVSTPVQEDAPPGTVI-------AVISVLDRDSGDNG 387



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T +PLD EA   YN+S+TA +M G+ A+    ++ V + D NDN P+F Q +Y+ 
Sbjct: 408 YYTLVTTEPLDREAVSEYNISITARDM-GSPALLTRSTLTVPVSDVNDNAPHFLQPSYSV 466

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YV E    GA + + ++L       D D + NA L
Sbjct: 467 YVMENNAPGASICSVSAL-------DPDCQQNAYL 494



 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ ++ LD E  R + L +TA +  +        V+V +LD NDN P F Q +Y   
Sbjct: 195 FAELVLERALDREQQRTHRLLLTALDGGIPRRSGTAHVLVTVLDANDNIPAFDQPSYGVS 254

Query: 77  VSEAAPIGALVL 88
           + E AP G LV+
Sbjct: 255 LPEDAPAGTLVI 266


>gi|218505781|ref|NP_001136238.1| protocadherin-15 isoform CD1-7 precursor [Homo sapiens]
          Length = 1952

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|363738882|ref|XP_001231879.2| PREDICTED: protocadherin-10 [Gallus gallus]
          Length = 966

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
           + P  G +L K PLDYE   ++ L V A +  G  AV   C V+VH+LD NDN P  T  
Sbjct: 299 VEPRSGQVLLKGPLDYERASLHELYVQAKDR-GPSAVAVHCRVLVHLLDVNDNAPEVTLT 357

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + +  V E AP G ++        VI   D+DS  N 
Sbjct: 358 SVSTPVQEDAPPGTVI-------AVISVLDRDSGDNG 387



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T +PLD EA   YN+S+TA +M G+ A+    ++ V + D NDN P+F Q +Y+ 
Sbjct: 408 YYTLVTTEPLDREAVSEYNISITARDM-GSPALLTRSTLTVPVSDVNDNAPHFLQPSYSV 466

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           YV E    GA + + ++L       D D + NA L
Sbjct: 467 YVMENNAPGASICSVSAL-------DPDCQQNAYL 494



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ ++ LD E  R + L +TA +  +        V+V +LD NDN P F Q +Y   
Sbjct: 195 FAELVLERALDREQQRTHRLLLTALDGGIPRRSGTAHVLVTVLDANDNIPAFDQPSYGVS 254

Query: 77  VSEAAPIGALVL 88
           + E AP G LV+
Sbjct: 255 LPEDAPAGTLVI 266


>gi|327270417|ref|XP_003219986.1| PREDICTED: protocadherin gamma-A8-like [Anolis carolinensis]
          Length = 822

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 16  HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNY 73
           H  +  L+T+K LD E   +YN+++TA +        S I+   +LD NDN P F +  Y
Sbjct: 400 HDDFYTLVTEKSLDREEVAVYNITITAVDEGIPTLSTSEIISLKVLDTNDNPPLFVKSTY 459

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           T Y  E  P GA +         ++A D D E NA
Sbjct: 460 TSYFLENNPRGATI-------FFLKAHDLDWEENA 487



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G ++     DYE + +Y   V A +  G +    V++ + D NDN P  T     
Sbjct: 296 LNSTTGEIIVVGNFDYEKSSLYEFEVEAVDGGGLRDRSKVLIFVTDLNDNPPELTMTFAI 355

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + IG  V        ++ A+DKDS  N 
Sbjct: 356 SSIPENSLIGTTV-------AILNAQDKDSGVNG 382



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L+ +KPLD E   +++L + A++        ++ +H+  LD NDN P F+Q  Y   V E
Sbjct: 196 LVLEKPLDREEQSVHDLILIASDGGDPMKSGTLQIHVIVLDANDNAPVFSQSVYEVTVKE 255

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P  + V T       IRA D D  T+ 
Sbjct: 256 NIPKWSTVAT-------IRATDLDEGTSG 277


>gi|218505785|ref|NP_001136240.1| protocadherin-15 isoform CD1-9 precursor [Homo sapiens]
          Length = 1935

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 412



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 496



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1065 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1125 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1151



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 807 EENLPAGTTILQ-------IEAKDVD 825



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 555 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 614

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 615 N-------LQATDREGDSITYAIENG 633



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 844 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 903

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 904 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 932


>gi|119574537|gb|EAW54152.1| protocadherin 15, isoform CRA_b [Homo sapiens]
          Length = 1954

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  SV + +  G +    VIV+I  +D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSVKSFSFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 520



 Score = 38.5 bits (88), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1089 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1148

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1149 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1175



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 771 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 830

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 831 EENLPAGTTILQ-------IEAKDVD 849



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 579 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 638

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 639 N-------LQATDREGDSITYAIENG 657



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 868 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 927

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 928 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 956


>gi|432847530|ref|XP_004066068.1| PREDICTED: protocadherin-23-like [Oryzias latipes]
          Length = 3252

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G L     LD+EA   +   V AT+    +    A  +VIVH+LD NDN P F +
Sbjct: 1023 VHPKTGWLYLSNSLDFEAESRFRFQVLATSTDASLENTTATATVIVHVLDINDNAPVFGR 1082

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              Y   VSE +    LV T       + A DKDS  N+ L
Sbjct: 1083 EVYYFTVSEGSSPQGLVGT-------VEAVDKDSGKNSQL 1115



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++   + LD+EA + Y L V A++     +   V V +LD NDN P FTQ++Y   +SE
Sbjct: 2289 GLITLTQALDHEAQKEYTLKVWASDSIHHTS-GEVKVQVLDVNDNAPVFTQVSYKVEMSE 2347

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             A    LVLT       + A D+DS  N 
Sbjct: 2348 LASAETLVLT-------VSATDRDSGLNG 2369



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            +L    G+L    PLDYE  +++ ++V A +    +  +  ++ V + D ND  P F+++
Sbjct: 1556 SLEERTGLLFLSSPLDYETQQVHRITVRAVDHGAPQLSSTQTLTVKVGDVNDQAPVFSEI 1615

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V+E    G  V+        + A D DSE NA++
Sbjct: 1616 IYEASVAENRDAGEPVVR-------VSATDIDSEENAVV 1647



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L+   PLD E T  Y L+V+ ++        S +V +   D NDN P F+   Y   V
Sbjct: 2507 GRLVLCNPLDRETTESYELTVSVSDRGIPPLNSSAVVRVTVTDCNDNAPIFSSTEYHAQV 2566

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE + IG      TSL L + A+D D   N L+
Sbjct: 2567 SENSQIG------TSL-LQVSAQDPDLGINGLV 2592



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 17  PPYGV-LLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           PP  + L+  K LD E   +++L++   +  +        + + +LD NDN P F Q  Y
Sbjct: 174 PPLNLDLILSKKLDRETQDVFSLTIEGFDGGIPARTGRLQLKIRVLDENDNPPVFNQTEY 233

Query: 74  TGYVSEAAPIGALV 87
              + E AP+G+ V
Sbjct: 234 HTSIHEDAPVGSFV 247



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L   +PLDYE+T  + L V A ++   AG     +V V + D ND+TP+F +      
Sbjct: 1344 GDLYVNQPLDYESTSQFFLLVRAEDVGPAAGVNVSVAVSVTVEDVNDHTPWFLEELVIFG 1403

Query: 77   VSEAAPIGALVL 88
            + E A +G+L  
Sbjct: 1404 LREDAAVGSLAF 1415



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYF 68
            L P  G+LL    LDYE    Y L++ A++   A      +   V + + D NDNTPYF
Sbjct: 2607 LDPHTGLLLINHSLDYEQDPKYTLTIRASDAGEAAENHKVSFAVVFITVSDENDNTPYF 2665



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 15  LHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           + P  G L   + +D +    +Y++ + A +  G  A   V + I D NDN P F    Y
Sbjct: 603 VQPHTGELCVSQDIDRDVGPSVYDILIKAEDPGGQSAQTYVHIEIEDLNDNAPVFNPEEY 662

Query: 74  TGYVSEAAPIGALVLT 89
           T  VS  AP G  +L+
Sbjct: 663 TVSVSNHAPPGTEILS 678



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFT 69
            + P  G L    PLD E+   +  +VTAT+ A +K     A  +  + +LD NDN P F 
Sbjct: 1450 IDPRTGCLTVAAPLDRESVPSFVFTVTATDQAISKEERKQASVTAQLFLLDVNDNRPVFV 1509

Query: 70   QLNYTGYVSEAAPIGALV 87
              + T  V E A +G+L+
Sbjct: 1510 SGD-TVQVMEDAEVGSLL 1526



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTGYVS 78
           L     LD E   +Y L V AT+ +G+  + S +V    +LD ND  P F +  YT  V+
Sbjct: 396 LCVHSELDREEEDLYELRVKATD-SGSPPLSSEMVLLLKVLDANDCLPVFEKEVYTISVA 454

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P+G+ V+  T       A D D   NA
Sbjct: 455 EDLPLGSSVIQMT-------ARDADEGPNA 477



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 21/110 (19%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRND 63
            +LF+I     +P  GV+ T   LD E    + L V A  + +       +V+  +LD ND
Sbjct: 1658 ELFSI-----NPYSGVITTNSRLDREQQSHFMLRVQARDSGLRPLSGTATVLCSVLDDND 1712

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVI---RAEDKDSETNALL 110
            N P F Q ++T           + L    LP VI   +A D D E N+ +
Sbjct: 1713 NPPVFMQSSFT-----------IRLPENLLPGVIHTAQAFDPDQEENSTI 1751


>gi|15072441|gb|AAK31581.1| protocadherin 15 [Homo sapiens]
          Length = 1955

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 468 PVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKQIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|327270397|ref|XP_003219976.1| PREDICTED: protocadherin gamma-B1-like [Anolis carolinensis]
          Length = 812

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +KPLD E+ +  NL +TA +    +      + +++ D NDN P FTQ  Y   
Sbjct: 193 YAELVLQKPLDRESEQTINLILTALDGGEPRKSGTAQIQINVTDANDNPPIFTQEVYKIS 252

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E+AP+G+ VL        + A DKD  TNA
Sbjct: 253 LHESAPVGSQVLQ-------VLASDKDEGTNA 277



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L P  G++    PLD+E T+ Y +++ A +  G    C++ + +LD NDN P  T    
Sbjct: 295 SLDPILGIISLMDPLDFEETKEYTMTIAAKDGGGLITHCNIEISVLDENDNAPEVT---- 350

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
               S  +P+    L+ T + LV    DKDS
Sbjct: 351 --LASVFSPVPENALSGTVIALV-NINDKDS 378



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  +LT   LD E T  YN+++ AT+        + ++ + I D NDN P F + ++  Y
Sbjct: 403 YYKILTGGLLDRERTSEYNITIIATDTGSPPLSTIKTITLQISDINDNAPAFEKSSFRMY 462

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P GA + +       I+A D D  +NA
Sbjct: 463 VPENKPSGASIFS-------IKASDPDVGSNA 487


>gi|218505775|ref|NP_001136235.1| protocadherin-15 isoform CD1-1 precursor [Homo sapiens]
          Length = 1962

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 523



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1092 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1178



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 834 EENLPAGTTILQ-------IEAKDVD 852



 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 582 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 641

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 642 N-------LQATDREGDSITYAIENG 660



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|218505777|ref|NP_001136236.1| protocadherin-15 isoform CD1-2 precursor [Homo sapiens]
          Length = 1957

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.7 bits (86), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|115387123|ref|NP_149045.3| protocadherin-15 isoform CD1-4 precursor [Homo sapiens]
 gi|116242702|sp|Q96QU1.2|PCD15_HUMAN RecName: Full=Protocadherin-15; Flags: Precursor
 gi|14581464|gb|AAK31804.1| protocadherin 15 [Homo sapiens]
 gi|162318576|gb|AAI56451.1| Protocadherin 15 [synthetic construct]
          Length = 1955

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|410907419|ref|XP_003967189.1| PREDICTED: cadherin-1-like [Takifugu rubripes]
          Length = 1043

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GVL   +PLD E T  Y L   A N  G   +    +++ ++D+NDN P F +  + G V
Sbjct: 353 GVLYVTQPLDREKTATYTLLAHAMNERGEVVEDPMELVIKVIDQNDNAPEFKESRFYGGV 412

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
           SE+A IG  ++        + AEDKD
Sbjct: 413 SESAEIGDAIMN-------VTAEDKD 431



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 14  ALHPPYGVLLTK-KPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQ 70
           A++P  GV+  K   LD E    Y L + A +MAG    + C+ ++ ++D NDN P F+ 
Sbjct: 458 AINPESGVISVKASELDREIQPEYKLVIEAADMAGEGLTSTCTAVITVIDTNDNAPLFSA 517

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
              +  V E   +GA V+        ++  DKD
Sbjct: 518 TFSSAAVPENV-LGAEVMR-------LKVTDKD 542


>gi|410266134|gb|JAA21033.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
          Length = 929

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|344265054|ref|XP_003404602.1| PREDICTED: protocadherin beta-4-like [Loxodonta africana]
          Length = 793

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 55/112 (49%), Gaps = 16/112 (14%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  ILKP     Y  LLT  PLD E T  YN+++T T++     K    + V + 
Sbjct: 383 SIPDHLPFILKPTFKNFY-TLLTDSPLDREKTAEYNITITVTDLGSPRLKTEHKITVLVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E          N S  L    + A D+DS +NA
Sbjct: 442 DVNDNAPTFTQTSYTLFVRE----------NNSPALHMGTVSATDRDSGSNA 483



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 23  LTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           LTKK LD+E    Y++ + AT+  G     +V++ ++D NDN P  T  + T  + E AP
Sbjct: 302 LTKK-LDFEKINSYHVEIEATDGGGLSGKGTVVIEVVDVNDNAPELTISSLTSSIPENAP 360

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNA 108
                    ++  + R  D+DS  N 
Sbjct: 361 --------ETVVSIFRIRDRDSGDNG 378



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYEA R +   V A ++ G+ A+ S   V V ++D NDN+P+  +   N +
Sbjct: 510 GHLFALRSLDYEALRAFEFRVGAADL-GSPALSSEALVRVEVVDENDNSPFVLYPLQNDS 568

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P  A       L   + A D DS  NA L
Sbjct: 569 APCAELVPRAA---KAGYLVTKVVAVDSDSGQNAWL 601


>gi|334311095|ref|XP_001377932.2| PREDICTED: protocadherin gamma-B5-like [Monodelphis domestica]
          Length = 811

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G + T+  LD+E T  + L V A +  G  A C VI+ ILD NDN P  T  + +
Sbjct: 294 VDPQNGEIKTQDHLDFEDTESFTLGVEARDGGGMAAECKVILEILDENDNNPEVTFTSVS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E +  G ++        + + ED+DS  N 
Sbjct: 354 STIAEDSVPGTVI-------ALFKTEDRDSGVNG 380



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  LLT  PLD E    YN++VTAT+        S  + ++I D NDN P F Q +Y  Y
Sbjct: 402 YYKLLTDGPLDREQIPEYNITVTATDKGNPPLSTSKTLTLNIADVNDNHPVFLQPSYVVY 461

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P  A +         + A D D E N 
Sbjct: 462 VPENNPSAASIAR-------VSASDSDLEGNG 486



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+ +KPLD E    ++L + A  + G   V S    + +++ D NDN P F+Q  Y 
Sbjct: 191 YPELVMEKPLDREKQSSHHLVLMA--LDGGDPVLSGTAQIRINVTDANDNPPVFSQDFYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G+ VL        ++A DKD   NA
Sbjct: 249 VSLRENLPPGSSVLR-------VKATDKDEGINA 275



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 4/50 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTP 66
           G +  ++  DYE  R + L++ A + +G+ A+C+ +   V +LDRNDN P
Sbjct: 513 GDIFAQRSFDYEQVRTFELTLQACD-SGSPALCANVTLRVFVLDRNDNAP 561


>gi|301753491|ref|XP_002912591.1| PREDICTED: protocadherin gamma-C5-like isoform 2 [Ailuropoda
           melanoleuca]
 gi|281345410|gb|EFB20994.1| hypothetical protein PANDA_000351 [Ailuropoda melanoleuca]
          Length = 944

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD E T  Y + + A++ AG+    A  ++ ++I D NDN PYFTQ  YT Y+ 
Sbjct: 406 LLTSQPLDRETTSHYIIELLASD-AGSPPLHAHLTIRLNISDVNDNAPYFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+        ++ A D D+  NA L
Sbjct: 465 ENRPPGSLL-------CIVAASDPDTGDNAHL 489



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCMIQVEVGDANDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    + E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPILESTPVGTVV-------GLFNVRDRDSGRNG 383



 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD EA   ++L +TA +    A++  ++I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDREAQARHHLVLTAVDGGIPARSGTTLISVIVLDVNDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            AP+G L+L        + A D D  TN  LD
Sbjct: 254 NAPVGTLLLR-------LNATDPDEGTNGQLD 278


>gi|397517978|ref|XP_003846124.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-B7 [Pan
           paniscus]
          Length = 808

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTMTLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|296472885|tpg|DAA15000.1| TPA: protocadherin-related 15 isoform 2 [Bos taurus]
          Length = 1676

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G       S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPTFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|195429581|ref|XP_002062836.1| GK19483 [Drosophila willistoni]
 gi|194158921|gb|EDW73822.1| GK19483 [Drosophila willistoni]
          Length = 3590

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+ T+  LD E +  YNL VTA++MA A+     A  SV+V +LD NDN P F++  YT
Sbjct: 522 GVISTRSSLDRETSDSYNLVVTASDMASAQSERKTATASVLVKVLDDNDNYPQFSERTYT 581

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E    G+   +  +    IRA D D   NA +
Sbjct: 582 VQVPEDQ-WGS---SEDNTVAHIRATDADQGNNAAI 613



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   + LDY+  + + L+VTAT+  G     +V ++I D N+  P F    Y+  V E
Sbjct: 843 GLITIAQSLDYKQEKRFLLTVTATDSGGRSDTATVHINITDANNFAPIFENAPYSSSVFE 902

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            AP+G  V       LV+ A D D   NA +  S N
Sbjct: 903 DAPVGTTV-------LVVSATDSDVGINAQITYSLN 931



 Score = 45.4 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G + T K LD E+  IY+L+  A +        +V V I   D ND+ P F    
Sbjct: 1052 IDPTSGTIRTNKGLDRESVAIYHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDK 1111

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T YV E +P+G++V         I A D D   NA++
Sbjct: 1112 ITLYVPENSPVGSVVGE-------IHAHDPDEGVNAVV 1142



 Score = 43.1 bits (100), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KPLDYE+ R Y L + A +           ++V+++D NDN P F    +   V E  P+
Sbjct: 639 KPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPV 698

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G  ++        ++A D D   NA
Sbjct: 699 GYNIIR-------VQAYDSDEGANA 716



 Score = 41.2 bits (95), Expect = 0.080,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ T   LD E   ++   V AT+          ++ V++LD ND++P F    +   +
Sbjct: 408 GVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASI 467

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E A +G+ V+T       +RA D+D   NA ++
Sbjct: 468 REGATVGSTVIT-------LRATDQDIGKNAEIE 494



 Score = 38.1 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T  PLD E T  Y L+VTA +           V + + D NDN P F    Y   +
Sbjct: 951  GAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEISVTDVNDNAPMFKNPLYQSSI 1010

Query: 78   SEAAPIGALVL 88
             E A +G  V+
Sbjct: 1011 LEDALVGTSVI 1021



 Score = 37.7 bits (86), Expect = 0.89,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A+ P  G + T K LD E    +   V A +  +    A  SV++ + D NDN P F   
Sbjct: 732 AVDPRTGWVQTIKQLDREEQSRFTFQVVAKDGGVPPKSASSSVVITVQDVNDNDPNFNPK 791

Query: 72  NYTGYVSEAAPIGALVLTNTS 92
            Y   V E  P G  V T T+
Sbjct: 792 YYEANVGEDQPPGTPVTTVTA 812


>gi|410306226|gb|JAA31713.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
          Length = 927

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|292622519|ref|XP_001921123.2| PREDICTED: neural-cadherin-like [Danio rerio]
          Length = 2555

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           ++P  GV+ T    D E  R Y LSVTAT+ A      +C + V I D+NDN P F    
Sbjct: 490 INPDTGVISTAVSFDREKQREYTLSVTATDQAQEPLIGICQITVLIADQNDNDPKFENSR 549

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y  ++ E  P+G   L          A D D  TN+ +
Sbjct: 550 YQYFLREDTPVGTSFLRAA-------AHDDDQGTNSAI 580



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 11/110 (10%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           PV+ +  +KP        +L  + LDYE T  + L V   N+A     +  +V V+I D 
Sbjct: 693 PVRFY--IKPNRRDGSASILVAENLDYETTGFFTLRVRVQNVAAVPLASFTTVYVNITDV 750

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           NDN P+F    Y   V E A IG  V         + A D DS  + +++
Sbjct: 751 NDNVPFFMSSTYEATVPEGAEIGTSVAQ-------VSATDLDSGLHGMIN 793



 Score = 40.0 bits (92), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   + LDYE  + Y L + A++    +    V+++++++ND  P FTQ  Y 
Sbjct: 922  VEPEVGTIFIAQRLDYEQVQRYELRLVASD-GKWENQTMVVINVINQNDEAPLFTQTEYH 980

Query: 75   GYVSEAAPIGALVLTNTSLPLV---IRAEDKDSETN 107
              V E           T LP++   + A D D E +
Sbjct: 981  ASVMEEL---------TELPVLVLEVSATDPDQEAD 1007



 Score = 40.0 bits (92), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 15/113 (13%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATR-IYNLSVTATNM-AGAKAVCSVIVHI 58
           + +P  LF+I + +     G L   + +DYE+ + +++L V A+    G   +  V+VHI
Sbjct: 163 LVNPSNLFSINQES-----GALSLTRTVDYESGQHLHHLQVRASEPDTGLSNMAEVVVHI 217

Query: 59  LDRNDNTPYFTQLNYT-GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D ND TP F    Y+   V E  P G      TSL L + A D D+  NA L
Sbjct: 218 TDENDCTPEFMHSIYSRDNVPETTPTG------TSL-LQVLARDCDTGLNAEL 263



 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 20   GVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP-YFTQLNYTGY 76
            G++  KK +D+E    R +NL+V   + A   ++   I+ + D ND+TP +F Q    G 
Sbjct: 1254 GIVRLKKKIDFEKPHERTFNLTVKVED-ADFFSLAYCIIQVEDSNDHTPVFFPQFYEAGS 1312

Query: 77   VSEAAPIGALVLTNTSLPL 95
            + E  P+G +V   T++ L
Sbjct: 1313 MFEDVPVGTIVAQVTAMDL 1331



 Score = 37.0 bits (84), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 14   ALHPPYGVLLTK-KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            +++P  G + T  + LD E    Y + V A +  G     +  + I D ND+ P FTQ  
Sbjct: 1140 SINPTTGTIYTVLRSLDREVVDRYLVVVEARDGGGLSGTGTATIVISDVNDHPPVFTQRV 1199

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   +SE   I + V       +V+ A D D   N+++
Sbjct: 1200 YMASMSENLDINSEV-------MVVAATDGDEGENSVM 1230



 Score = 35.0 bits (79), Expect = 6.0,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT--NMAGAKAVCSVIVHILDRNDNTPYF---TQLNYT 74
            G +  ++ LD E    +   V AT  N AG      V+V + D NDN P F   T   + 
Sbjct: 1031 GRIFAQRRLDREVRSAWQFLVLATDENGAGLTGFADVLVDVQDINDNAPVFLCATDNCFL 1090

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G+V E +P    ++   +  L    +D  +  NA+L
Sbjct: 1091 GHVPENSPADTSIMEMRATDL----DDPKAGKNAIL 1122


>gi|194853658|ref|XP_001968202.1| GG24633 [Drosophila erecta]
 gi|190660069|gb|EDV57261.1| GG24633 [Drosophila erecta]
          Length = 3556

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +PLD E    Y L + A++    K+    C++ + + D+NDN P F    YTG V E
Sbjct: 1904 LSARPLDREQHSRYTLQIQASDRGQPKSRQGHCNITIFVEDQNDNAPSFKLSKYTGSVQE 1963

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+G  VL        I A D D   NA L
Sbjct: 1964 DAPLGTSVLQ-------INAVDADLGVNARL 1987



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
             + P  G +  + PLD E    Y L+V AT+     A A   VIV +LD NDN P F + 
Sbjct: 1097 GIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKS 1156

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   + E    G++V        V+ A D D   NA +
Sbjct: 1157 KYEFRIEENLRRGSVV-------GVVTASDLDLGENAAI 1188



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  GV+ T+  LD+E   IY L V A++      + +  + V +LD NDN P FT  
Sbjct: 1309 SIDPSSGVIRTRVVLDHEERSIYRLGVAASDGGSPPRETIRMLRVEVLDLNDNRPTFTSS 1368

Query: 72   NYTGYVSEAAPIGALV 87
            +    V E A +G +V
Sbjct: 1369 SLVFRVREDAALGHVV 1384



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 16/108 (14%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
            +LFAI   + H     L   + LDYE+++ ++L VTAT+  G  ++ +   ++V + D N
Sbjct: 977  RLFAIDARSGH-----LSLTQHLDYESSQRHSLIVTATD-GGVPSLSTNLTILVDVQDVN 1030

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            DN P F +  Y+  VSE+  I A ++        + A D D+  NA +
Sbjct: 1031 DNPPVFEKEEYSVNVSESRSINAQIIQ-------VNASDLDTGNNARI 1071



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G++ +    DYE  + Y++ + A++M G KA  +V V I  R++ TP FT+  Y
Sbjct: 2921 GLVTSAFVFDYEQRQRYDMELLASDMGGKKAGVAVRVEIESRDEFTPQFTERTY 2974



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 12/98 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT--Q 70
            +HP  G + T++PLD E   +Y+L V A +       A   V +H+ D NDN P     Q
Sbjct: 1201 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1260

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V E  P G  V+        +RA D+D+  NA
Sbjct: 1261 EDVVS-VREEQPPGTEVVR-------VRAVDRDNGQNA 1290



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G++ T+  +D E   +  L+V A +  +    +  +++V I D NDN P F Q  
Sbjct: 556 IDPQTGLITTRSHIDCETEPVPQLTVIARDGGVPPLSSTATILVTIHDVNDNEPIFDQSF 615

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Y   V+E  P+G  +L        + A D D   NA+++
Sbjct: 616 YNVSVAENEPVGRCILK-------VSASDPDCGVNAMVN 647



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP---------YFTQ 70
            G L+ K+ LDYE  + Y L V A++ A  +A   + V + D NDN P         YF  
Sbjct: 2485 GKLVLKRRLDYELQQEYELDVIASD-AAHEARTVLTVRVNDENDNAPVFLAQQPPAYFAV 2543

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            L     +SE+  +   +LT       + A D DSE N
Sbjct: 2544 LPAISEISESLSVDFELLT-------VNATDADSEGN 2573



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 18/102 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L  + PLD+E  + Y L V A + +       +   +V + +LD NDN P F   N +
Sbjct: 1549 GSLSLQAPLDFETVQEYLLIVQALDQSSNVTERLQTSVTVRLRVLDANDNAPKFVSPNSS 1608

Query: 75   G------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G      ++S+A  IG +V         I A D+DS  N  L
Sbjct: 1609 GGKTASLFISDATRIGEVVAH-------IVAVDEDSGDNGRL 1643



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 27  PLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           PLD E    Y LSV AT+       A  S+ + I D NDN P F Q  Y   V E A  G
Sbjct: 461 PLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANVMEVADPG 520

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + A D+D   N+ L
Sbjct: 521 TSVLQ-------VLAHDRDEGLNSAL 539



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            GVL     LDY++  + Y L + A +    + +CS+    + + D NDN P F    Y  
Sbjct: 2810 GVLFVNNRLDYDSGAKSYELIIRACDSHHQRPLCSLQPFRLELHDENDNDPKFPLSEYVH 2869

Query: 76   YVSEAAPIGALVL 88
            +++E  P+G+ V 
Sbjct: 2870 FLAENEPVGSSVF 2882



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            +++PA     G++ T   LD E   IY L + AT+    +     ++ V I+D NDN P 
Sbjct: 2371 VIEPAFS---GIVRTNIVLDREIRDIYKLKIIATDEGVPQMTGTATIRVQIVDVNDNQPT 2427

Query: 68   FTQLNYTGYVSEAAPIGALVLT 89
            F   N    VSEA  +GA++ +
Sbjct: 2428 FPPNNLV-TVSEATELGAVITS 2448



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E T  Y+L + A +      +   +V + I D NDN P F Q  Y   V E A +G 
Sbjct: 244 LDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGT 303

Query: 86  LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            VL        + A D D++ N L++ + N
Sbjct: 304 SVLQ-------VYASDTDADENGLVEYAIN 326



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L+  + LD E    + L +     TATN   + A+ +V + + D NDN P + Q    
Sbjct: 1433 GNLVVARLLDREVQSEFRLEIRALDTTATNNPQSSAI-TVKIEVADVNDNAPEWPQDPID 1491

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSEA PIG ++   T       A D D+ TN  L
Sbjct: 1492 LQVSEATPIGTIIHNFT-------ATDADTGTNGDL 1520



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 14/92 (15%)

Query: 6    QLFAILKPALHPPYGVLLTK-----KPLDYEATRIYNLSVTATNMAG--------AKAVC 52
            Q FAI+       + +L +K     KPLD E   +Y L +  ++  G        + +  
Sbjct: 2677 QSFAIIAGNEESTFELLQSKAIVLVKPLDRERNDLYKLRLVLSHPLGPPLTSSLNSSSGI 2736

Query: 53   SVIVHILDRNDNTPYFTQ-LNYTGYVSEAAPI 83
            SVI+ ILD NDN P F +   Y   +SE AP+
Sbjct: 2737 SVIITILDANDNFPIFDRSAKYEAEISELAPL 2768



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQ 70
            A+    G++ T   LD E    YN  V AT+    +   A   V +++LD NDN P F +
Sbjct: 2000 AIDSQSGLITTVGKLDRELQASYNFMVLATDGGRYEVRSATVPVQINVLDINDNRPVFER 2059

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              Y G V       AL+    +L L ++A D D   NA
Sbjct: 2060 YPYIGQVP------ALIQPGQTL-LKVQALDADLGANA 2090


>gi|431906996|gb|ELK11115.1| Cadherin-19 [Pteropus alecto]
          Length = 730

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G ++T  PLD E+T  YNLS+TAT    A+ + S  V V +LD ND+ P F+   Y  YV
Sbjct: 379 GTIVTTNPLDRESTAWYNLSITATEKYNAQQISSVPVYVQVLDINDHAPEFSDY-YETYV 437

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            E A  G ++ T +++      ED     N  ++ S N
Sbjct: 438 CENADSGQIIQTISAVDRDDSIEDHHFYFNLSVEDSKN 475



 Score = 41.2 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 11/104 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFT 69
           ++ P  GV+     +D E    Y + + A +M G         SV++ + D NDN P F 
Sbjct: 158 SIEPTTGVIRISSIMDRELQDEYWVIIQAKDMVGLPGALSGTTSVLIKLSDINDNKPIFK 217

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
           +  Y   VSE+AP G  +         I A D D   NA +D S
Sbjct: 218 ESLYRMTVSESAPSGTSIGK-------IEAYDNDIGENAEMDYS 254



 Score = 39.3 bits (90), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
           G +   + LD E   +Y L     +    KAV      ++ + D NDN P F    Y   
Sbjct: 57  GDIYAVQKLDREEQSLYTLRAQVIDTTTGKAVEPESEFVIRVSDVNDNEPKFLDEPYEAV 116

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E +P G LV+  T+      A+D  S  NA L
Sbjct: 117 VPEMSPEGTLVIQVTASD----ADDPSSGNNARL 146


>gi|426350340|ref|XP_004042735.1| PREDICTED: protocadherin gamma-B7 [Gorilla gorilla gorilla]
          Length = 808

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|127138695|ref|NP_001076039.1| protocadherin gamma-B7 precursor [Pan troglodytes]
 gi|62510858|sp|Q5DRA5.1|PCDGJ_PANTR RecName: Full=Protocadherin gamma-B7; Short=PCDH-gamma-B7; Flags:
           Precursor
 gi|410352059|gb|JAA42633.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
          Length = 929

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|262263222|tpg|DAA06599.1| TPA_inf: protocadherin gamma a6 isoform [Anolis carolinensis]
          Length = 942

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 16  HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNY 73
           H  +  L+T+K LD E   +YN+++TA +        S I+   +LD NDN P F +  Y
Sbjct: 400 HDDFYTLVTEKSLDREEVAVYNITITAVDEGIPTLSTSEIISLKVLDTNDNPPLFVKSTY 459

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           T Y  E  P GA +         ++A D D E NA +
Sbjct: 460 TSYFLENNPRGATI-------FFLKAHDLDWEENARI 489



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G ++     DYE + +Y   V A +  G +    V++ + D NDN P  T     
Sbjct: 296 LNSTTGEIIVVGNFDYEKSSLYEFEVEAVDGGGLRDRSKVLIFVTDLNDNPPELTMTFAI 355

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + IG  V        ++ A+DKDS  N 
Sbjct: 356 SSIPENSLIGTTV-------AILNAQDKDSGVNG 382



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L+ +KPLD E   +++L + A++        ++ +H+  LD NDN P F+Q  Y   V E
Sbjct: 196 LVLEKPLDREEQSVHDLILIASDGGDPMKSGTLQIHVIVLDANDNAPVFSQSVYEVTVKE 255

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P  + V T       IRA D D  T+  +
Sbjct: 256 NIPKWSTVAT-------IRATDLDEGTSGQI 279


>gi|426350299|ref|XP_004065326.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin alpha-3 [Gorilla
           gorilla gorilla]
          Length = 811

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A  SV V + D NDN P F Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ KK L+ E T  + L +TA +  G K        + + +LD NDN P F +  Y   +
Sbjct: 194 LVLKKNLNREDTPKHYLLITAID--GGKPELTGTTQLKITVLDVNDNAPAFERTIYKVRL 251

Query: 78  SEAAPIGALVLT 89
            E AP G LV+T
Sbjct: 252 FENAPNGTLVVT 263


>gi|410266138|gb|JAA21035.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
          Length = 925

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|410266126|gb|JAA21029.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
          Length = 925

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|355691684|gb|EHH26869.1| hypothetical protein EGK_16945 [Macaca mulatta]
          Length = 746

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS +NA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGSNA 484



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGSLHLKAELDYEAIQTYTLTIQAKDGGGLSGKCTVVVEVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E         ++ ++  V R  D+DS  N 
Sbjct: 354 SPIAEN--------SSETVVAVFRIRDRDSGNNG 379



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F Q  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDINDNAPDFLQSLYQVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSIVVS-------VSARDLDTGSNG 275


>gi|301621404|ref|XP_002940045.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4 [Xenopus
           (Silurana) tropicalis]
          Length = 5753

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G + TK  +D+E T+ Y++S+ A +  G  A   V++ I+D NDN P  +  + T
Sbjct: 261 INPNNGEIKTKGNVDFEETKYYDISIQAEDGGGLVAHAKVLIEIIDENDNVPEISITSIT 320

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             +SE +  G LV        +I A D DS  N  +D
Sbjct: 321 TPISEDSASGTLV-------ALIEAHDLDSGENGEVD 350



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  LLT  PLD E    YN+++ AT+          ++ + I D NDN+P F Q +Y  Y
Sbjct: 2808 YFRLLTTSPLDREKIHRYNITIKATDKGSPPLSTTKTLTLLISDVNDNSPAFGQTSYVVY 2867

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P+G  +         ++A D D + NA
Sbjct: 2868 VPENNPLGFSIFQ-------VQASDPDLDENA 2892



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            Y  LLT + LD E    YN+++ AT+        +  + +  LD NDN P F Q +Y  Y
Sbjct: 2003 YFRLLTTRNLDREEMHEYNITIKATDRGSPSLSTTKTIKLVLLDVNDNPPVFGQASYVVY 2062

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ V         ++A D D + NA
Sbjct: 2063 IPENNPSGSSVFQ-------VQASDPDLDDNA 2087



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G + T   +D+E  + Y++SV A +     A   V++ I D NDN P  +  + T
Sbjct: 725 INPNNGEIKTIGNVDFEEEKYYDISVQAEDHGSLVANAKVLIEITDENDNAPEISVTSIT 784

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             +SE +  G +V        +I+A D DS  N  +D
Sbjct: 785 TPISEDSAPGTVV-------ALIKAHDLDSGENGEVD 814



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + T++ LD+E T+ Y ++V A +  G  +   VI+ I+D NDN P  T  + +  + E
Sbjct: 4317 GEIRTREELDFEVTKAYVMNVEAADGGGLVSHAKVIIQIVDANDNAPEITLTSVSNSIPE 4376

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  G +V        +I   D DS  NA
Sbjct: 4377 NSVPGTVV-------ALINIRDVDSGENA 4398



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            Y  LLT   LD EA + YN+++ AT+        +  + +L  D NDN P F Q  Y  Y
Sbjct: 4419 YYKLLTTSTLDREAMQEYNITIKATDRGSPPLSTTKTIRLLIQDVNDNPPVFDQTKYVVY 4478

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G+ +         ++A D D   NA
Sbjct: 4479 IPENNPSGSSLFQ-------VQASDPDLNENA 4503



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           ++T   LD E +  YN+++ AT+          ++ + +LD NDN P F    Y  YVSE
Sbjct: 835 IVTTSALDRERSSHYNITIQATDKGSPPLSFRKTIRLDVLDINDNPPVFQTSTYIAYVSE 894

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               GA + +       I+A DKD+E N  L
Sbjct: 895 NNQPGASIYS-------IQAIDKDTEENGKL 918



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +L    G +  +  +DYE  R Y +SV A +      +  C V V I D NDN P  T  
Sbjct: 5108 SLDQQTGEICVQGKVDYEYQRSYEISVIARDHGVPEMEGHCIVQVDIEDLNDNAPAITLS 5167

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++   + E  PIG  V       L+   +D+DS  N 
Sbjct: 5168 SFVSSIPEDTPIGTTV-------LLFSVKDQDSGKNG 5197



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E    YN+++ AT+          ++ + ILD NDN P F Q +Y  Y
Sbjct: 3600 YYTLVTTGTLDREEMPEYNITIKATDRGSLPLSTTKTIRLVILDVNDNAPIFEQPSYVVY 3659

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGST 114
            + E  P G+ +         ++A D D + NA +  ST
Sbjct: 3660 IPENNPSGSSIFQ-------VQASDPDLDNNAKIVYST 3690



 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + TK  LD+E T+ Y + V A +  G  +   V++ +LD NDN P     + +  + E
Sbjct: 3498 GEIRTKGTLDFEITKAYEMIVEAQDGGGLFSHTKVVIQVLDTNDNAPEIILTSVSNSIPE 3557

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  G +V        +I  +D DS  N 
Sbjct: 3558 DSLPGTVV-------ALIDIQDMDSGENG 3579



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 36/68 (52%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + TK  LD+E+ + + + V A +  G  +   V++HI+D NDN P     + +  + E
Sbjct: 2706 GEIRTKGTLDFESIKAFEMIVEAQDGGGLFSNAKVVIHIVDANDNAPEIIITSVSNSIPE 2765

Query: 80   AAPIGALV 87
             +  G ++
Sbjct: 2766 DSSPGTVI 2773



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
            G + TK  LD+E T+ Y + V A +  G  +   V++ I+D NDN P
Sbjct: 1901 GEIRTKGTLDFETTKAYEMIVEAQDGGGLFSNAKVVIQIVDANDNAP 1947



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+ +  LD E    + L +TA++        + ++ I+  D NDN P FTQ  Y   + E
Sbjct: 625 LILQTGLDRETQSNHELILTASDGGNPVQTGTTLIKIIVTDFNDNFPVFTQEVYKVNIRE 684

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PI +LV       L + A DKD   NA +
Sbjct: 685 NIPINSLV-------LYVNASDKDEGINAQI 708



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTP 66
            +L+   GVL  ++P DYE  R + + + A +        +VIV I   DRNDN+P
Sbjct: 3705 SLNSITGVLYAQRPFDYEQMREFTIQIMAKDNGSPPLNSTVIVKICVTDRNDNSP 3759



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+T + LD E    Y + +TA ++     +   +V + I D NDN P F QL+   Y++E
Sbjct: 5220 LITNQLLDRELDDQYTIHLTARDLGLPPLQTEATVDLKITDTNDNPPTFEQLSAGVYINE 5279

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
                GAL+         + A D+D   NA ++ S
Sbjct: 5280 NNKPGALL-------YAVSASDRDEAENAQVEYS 5306



 Score = 37.7 bits (86), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 14/102 (13%)

Query: 8    FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTP 66
            FA+LKP    P G L+     D   + I N S     +A A  V  +I + + D NDN P
Sbjct: 1196 FALLKPPNSVPVGSLI-----DANDSGIGNESAQGA-LAYAAVVEKIIRLEVSDINDNPP 1249

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             F +  Y  +V E    GA + +       I+A DKD+E N 
Sbjct: 1250 VFEKSTYIAFVPENNQPGASIYS-------IQAIDKDTEENG 1284



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ ++PLD E      + +TA +  +     +  + + I D NDN+P F+Q  Y   ++E
Sbjct: 1796 LVLERPLDREKQSALQIILTALDGGIPARTGISMIKIIISDINDNSPLFSQELYQVSLTE 1855

Query: 80   AAPIGALVL 88
            +AP+  LV+
Sbjct: 1856 SAPVNTLVI 1864



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 22   LLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            L+ ++PLD E      + +TA++    +   +AV  +IV  +D NDN P F++  Y   +
Sbjct: 4212 LILERPLDREKQSNLEIILTASDGGNPVKTGRAVIKIIV--IDVNDNVPMFSKELYQVSL 4269

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +E  P+  LV+        + A D+D   N 
Sbjct: 4270 TEGVPVNTLVID-------MNATDEDEGVNG 4293



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTP 66
           +++P  GV+  ++  DYE  R + + + A +        S IV I  +D+NDN+P
Sbjct: 937 SINPVTGVIYAQRSFDYEEDREFEIQIMAKDNGSPSMNSSAIVRICVVDQNDNSP 991



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +KPLD E     ++ +TA +     K   +VI ++I D NDNTP F++  Y   + E
Sbjct: 2601 LVLEKPLDREKQSYLDILLTAEDGGIPVKTGSAVIKINISDFNDNTPLFSKELYQVNLIE 2660

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+  LV+        + A D+D   N  +
Sbjct: 2661 TAPVNTLVVH-------LNATDEDEGVNGQI 2684



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTP 66
            GVL  ++P DYE  R +N+ V A +       +  +V + I D NDN+P
Sbjct: 4530 GVLYAQRPFDYEQMREFNVQVMAKDNGSPPLNSTATVKICITDINDNSP 4578



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+ +  LD E    + L +TA++        + ++ I+  D NDN P FTQ  Y   + E
Sbjct: 161 LILQTGLDRETQSNHELILTASDGGNPVQTGTTLIKIIVTDFNDNVPVFTQEVYKVNIHE 220

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             PI + VL        + + DKD   NA +
Sbjct: 221 NIPINSTVLH-------VNSSDKDEGINAQI 244



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTP 66
            +++P  G++  ++  DYE  R + + V A +        S IV I  +D+NDN+P
Sbjct: 1305 SINPVTGIIYAQRSFDYEQDREFEIQVMAKDNGSPPLNSSAIVRICVVDQNDNSP 1359



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
            Y  L+ +KPLD E      + +TA +        + I+ I   D NDNTP F++  Y   
Sbjct: 3390 YPELVLEKPLDREKQSALEIILTALDGGTPIKTGTAIIKISITDVNDNTPMFSKEVYPVN 3449

Query: 77   VSEAAPIGALVL 88
            + E AP+  LV+
Sbjct: 3450 LPENAPVDTLVI 3461



 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVS 78
            VL+ +K LD E    Y L +TA +        ++++ I  LD NDN P F    Y   + 
Sbjct: 5007 VLVLEKALDREEQDGYQLVLTAFDGGNPPKSGTILISIIVLDSNDNPPVFDSAVYKIGLK 5066

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E +P   LV+        + A+D D   N 
Sbjct: 5067 ENSPYNTLVIQ-------LHADDSDEGPNG 5089



 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTP--YFTQ----L 71
            G +  ++  D+E  +    +VTA +    K   ++ +H  ILD NDN P   F Q    L
Sbjct: 5328 GKIYAQQSFDHEEMQHVEFTVTAEDFGSPKLSSNITIHLYILDENDNYPTILFPQASQHL 5387

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                 + +A P G+LV         + A D DS  NA L
Sbjct: 5388 QSPQIIPKALPAGSLVTK-------VVAVDADSGYNAWL 5419



 Score = 34.3 bits (77), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTP 66
            G+L  ++P DYE  R + + V A +       +  +V + I D NDN+P
Sbjct: 2114 GILYAQRPFDYEQLREFGIQVMAKDNGSPPLNSTTTVTICITDLNDNSP 2162


>gi|296472886|tpg|DAA15001.1| TPA: protocadherin-related 15 isoform 3 [Bos taurus]
          Length = 1681

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G       S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPTFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1092 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDKDT 1178



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 523



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 834 EENLPAGTTFLQ-------IEAKDVDLGAN 856



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 582 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 641


>gi|57997201|emb|CAD38850.2| hypothetical protein [Homo sapiens]
          Length = 956

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 829 EENLPAGTTILQ-------IEAKDVDLGAN 851



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKQIYKGMVAPDAVKGTPITT-------VYAEDAD 954



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 14/87 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDGS 113
                   ++A D+  DS T A+ +G 
Sbjct: 637 N-------LQATDREGDSITYAIENGD 656


>gi|334311083|ref|XP_001377742.2| PREDICTED: protocadherin gamma-B1-like [Monodelphis domestica]
          Length = 836

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  LLT  PLD E T  YN++V A +        S   I+HI D NDN P F Q +Y  Y
Sbjct: 399 YHKLLTDGPLDREQTPKYNITVIAVDKGNPPLFTSKIFILHIADINDNPPVFLQPSYVAY 458

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            SE  P G+ +         + AED D E N 
Sbjct: 459 FSENNPSGSSIAK-------VLAEDPDLEQNG 483



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           LHP  G ++T+  LD+E T  Y + V A +     A C++ + ILD NDN P    ++ +
Sbjct: 293 LHPKSGEIITEDILDFEETNRYMMDVEAKD-GSHTAHCNIQIEILDENDNAPEVNFVSLS 351

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E +  G ++        +I+  D+DS+ N 
Sbjct: 352 DQIPEDSMPGTVI-------ALIKTHDRDSKENG 378



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL +K LD E    +NL + A +        +  + +++ D NDN P F+Q  Y   
Sbjct: 191 YPQLLLEKSLDREIQSSHNLVLMAIDGGEPAQSGLAEIRINVTDANDNAPIFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E    G+ VL        + A DKD   NA
Sbjct: 251 LPENLLPGSSVLR-------VTATDKDEGINA 275


>gi|194591877|gb|ACF76478.1| protocadherin-15-CD3 isoform 1 [Homo sapiens]
          Length = 1675

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|426364795|ref|XP_004049480.1| PREDICTED: protocadherin-15-like, partial [Gorilla gorilla gorilla]
          Length = 585

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 35  IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL- 93
           +Y++     N     A  S+ + ILD N+ +PYFT  +Y GY+ E+AP+GA +L + +L 
Sbjct: 250 LYSILAEQDNGHPLPAFASLHIEILDENNQSPYFTMPSYQGYILESAPVGATILDSLNLT 309

Query: 94  -PLVIRAEDKDSE 105
            PL I A DKD E
Sbjct: 310 SPLRIVALDKDIE 322



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 355 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 406



 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 14/87 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 465 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 524

Query: 89  TNTSLPLVIRAEDK--DSETNALLDGS 113
                   ++A D+  DS T A+ +G 
Sbjct: 525 N-------LQATDREGDSITYAIENGD 544


>gi|41281624|ref|NP_446394.1| protocadherin alpha-8 precursor [Rattus norvegicus]
 gi|40645532|dbj|BAD06373.1| cadherin-related neuronal receptor 8 [Rattus norvegicus]
 gi|50512338|gb|AAT77564.1| protocadherin alpha 8 [Rattus norvegicus]
          Length = 949

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+    LD E T  Y + VTA +  G+ ++C   SV V + D NDN P F Q  YT 
Sbjct: 404 YYSLVLDSALDRETTADYQVVVTARD-GGSPSLCTTASVSVEVADVNDNAPAFAQPEYTV 462

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V E  P GA + T       + A D+D++ NAL+
Sbjct: 463 FVKENNPPGARIFT-------VSAMDEDAQENALV 490



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 8/73 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           G ++ +  LD+E   +Y + V AT+     MAG    C+V+V +LD NDN P  T  + +
Sbjct: 300 GEIVIQGNLDFEQVDVYKIRVDATDKGHPPMAGH---CTVLVRVLDENDNVPQITLTSLS 356

Query: 75  GYVSEAAPIGALV 87
             V E A +G ++
Sbjct: 357 LPVREDAALGTVI 369



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + AG  A+ S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVFALQPLDHEELELLQFQVSARD-AGVPALGSNVTLQVFVLDENDNAPSILL 567

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               G  S A  +    ++   +   +RA D DS  NA L
Sbjct: 568 AGTEGLGSVATDLIQRSVSVGQVVAKVRAVDSDSGYNAWL 607



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYVSE 79
           L  +K LD E    + L +TAT+    +   SV  +V +LD NDN P F    Y   + E
Sbjct: 194 LALRKLLDREDAPEHKLLLTATDGGKPELTGSVQLLVTVLDVNDNAPTFQHPEYEVRILE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            +  G  V+        + A D+D  TN+ +  S N
Sbjct: 254 NSDNGTTVIR-------LNASDRDEGTNSAISYSFN 282


>gi|395817393|ref|XP_003782156.1| PREDICTED: protocadherin beta-16 [Otolemur garnettii]
          Length = 802

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  LLT++ LD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 397 LLKPSVKNFY-TLLTERALDREERAEYNITITVTDLGTPRLKTQLNITVRVSDINDNAPA 455

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT YV E    A  IG            I A D+DS TNA
Sbjct: 456 FTQTSYTLYVRENNSPALHIG-----------TISATDRDSGTNA 489



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K +DYE    Y + + AT+  G    CS+++ + D NDN P  T    T
Sbjct: 299 INPMTGEIRLRKQVDYETVLSYAVDIKATDGGGLSGKCSLLLQVTDVNDNPPEVTMSALT 358

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 359 SPIPENSP 366



 Score = 41.2 bits (95), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V++ ++D NDN P F +  Y   
Sbjct: 196 YPELVLDKELDREEEPEVRLTLTALDGGSPSRSGTAQVLIEVVDTNDNAPEFEKPIYKVQ 255

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +P+G+LV+T       + A D DS  N 
Sbjct: 256 IPENSPVGSLVVT-------VIARDLDSGVNG 280


>gi|380803815|gb|AFE73783.1| protocadherin gamma-A1 isoform 1 precursor, partial [Macaca
           mulatta]
          Length = 424

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E    YN++VTAT+           + +L  D NDN+P F Q +Y+ Y
Sbjct: 279 YYRLVTERTLDRELISGYNITVTATDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAY 338

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + +       +RA D DS  NA +
Sbjct: 339 IPENNPRGAAIFS-------VRAHDSDSNENAQI 365



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  +IY++ V A + AG      V++ +LD NDN P  T  + T  V E
Sbjct: 177 GEISNKEPLDFEEYKIYSMEVQAQDGAGLMTRAKVLIKVLDVNDNAPEVTITSVTTAVPE 236

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 237 NFPPGTII-------ALISVHDQDSGDNG 258



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G   V S    + + 
Sbjct: 52  SNPHFSLDVQQGADGPQHPEMVLRSPLDREEEAVHHLILTASD--GGDPVRSGTLRIYIQ 109

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D  +N 
Sbjct: 110 VVDANDNPPAFTQAQYHMNVPENVPLGTRL-------LMVNATDPDEGSNG 153


>gi|194591873|gb|ACF76476.1| protocadherin-15-CD2 isoform 1 [Homo sapiens]
          Length = 1783

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 474 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 525



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1094 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1153

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1154 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1180



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 776 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 835

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 836 EENLPAGTTILQ-------IEAKDVDLGAN 858



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 584 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 643

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 644 N-------LQATDREGDSITYAIENG 662



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 873 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 932

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 933 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 961


>gi|218505793|ref|NP_001136244.1| protocadherin-15 isoform CD3-2 precursor [Homo sapiens]
          Length = 1677

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|195401052|ref|XP_002059128.1| GJ16197 [Drosophila virilis]
 gi|194156002|gb|EDW71186.1| GJ16197 [Drosophila virilis]
          Length = 5168

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRNDNTPYFTQLNYTGY 76
            G ++  +PLDY+  + Y+L+++  ++ G KA+ ++    + + D NDN P F Q  Y GY
Sbjct: 3292 GAIIIMQPLDYDLMQEYHLNISVKDL-GYKALTALAMLTIILTDVNDNPPVFNQSEYHGY 3350

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++E  P+G  V           A DKDS  NA++
Sbjct: 3351 IAENKPVGTAVFQ-------AHATDKDSPKNAII 3377



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  + PLD E    Y L+++ ++       +V  V++H++D NDN P FT   +T 
Sbjct: 1108 PDGFLFVRAPLDREERDYYALTISCSDAGTPSRSSVVPVVIHVIDENDNPPQFTNSTFTF 1167

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E AP    V   T++       D+D   NA L
Sbjct: 1168 NIPENAPANTFVGKLTAV-------DRDIGRNAEL 1195



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            +L+P  G L     LDYE  + Y L V A +        ++ V+  +LD NDNTP F  +
Sbjct: 1996 SLNPQTGALTLTAKLDYEDVQHYILLVQAQDNGQPSLSTTITVYCNVLDLNDNTPLFDPM 2055

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            +Y+  + E   +G  V+T       + A+D DS  N L++ S
Sbjct: 2056 SYSSEILENVLVGKEVVT-------VSAKDIDSGNNGLIEFS 2090



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           P + ++     LD E    YNL+V A +      KA+  +I+ + D ND+ P F +  YT
Sbjct: 455 PLFHIVRVNGVLDREEISKYNLTVVAIDKGTPERKAIAYLIIDVNDVNDHEPVFEKSEYT 514

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE AP G  V +       I A D+D+  NA
Sbjct: 515 AVLSELAPTGTFVTS-------IVATDEDTGVNA 541



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L V A +    +     SV++H+LD+NDN P FT+L Y+  V
Sbjct: 2870 GEIYTTMRLDREEFSDYALVVEAVDQGVPQLTGTASVLLHLLDKNDNPPKFTRL-YSLNV 2928

Query: 78   SEAAPIGALVLTNTSLPL 95
            +E A IG+ V+  TS  L
Sbjct: 2929 TENAEIGSFVICVTSSDL 2946



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L+    LD E+  I+ L+V A + A   ++ S   + + +LD NDN P FTQ +    
Sbjct: 1340 GLLILAHRLDRESQEIHRLTVVARDAAIKNSLTSSVNITITVLDDNDNAPEFTQSSSEIS 1399

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E +P G  ++         RA D D   N+
Sbjct: 1400 VLETSPSGTELMR-------FRASDADQGMNS 1424



 Score = 40.8 bits (94), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 12/101 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVS 78
            G +L+    DYE  R Y L + A N   +    +V+ VH+L  N+  P F Q  +   VS
Sbjct: 3398 GTILSTASFDYEERRSYTLHIKAKNPDSSMESYAVLYVHVLGVNEFYPQFVQSAFHFDVS 3457

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
            E + +G  V +       ++A DKD   +     LL GS+N
Sbjct: 3458 ETSSVGTAVGS-------VQATDKDIGEDGRIYYLLVGSSN 3491



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 17/101 (16%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTA------TNMAG-AKAVCSVIVHILDRNDNTPYFTQLN 72
           G + T + +D EA   Y L V A      ++M+G A   C+V + ILD NDN P F Q  
Sbjct: 894 GRITTARRIDREAQAQYQLVVMARSVNRSSSMSGFAYGKCNVHIAILDLNDNAPNFAQDR 953

Query: 73  YTG---YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            T    ++ E   +G  +        + RA D+D+  N+ +
Sbjct: 954 DTEASIWLPEDTAVGQEI-------YLSRARDRDAGVNSRI 987



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L P  G L  +  LD EA   YN+ +  ++         +I+ + D NDN P F +  Y+
Sbjct: 1895 LEPSTGKLQLRDSLDREAKDKYNMRIRVSDGV-QYTETDIIIQVDDTNDNPPVFEESVYS 1953

Query: 75   GYVSEAAPIGALV 87
              + E AP G  V
Sbjct: 1954 FDIPENAPRGYQV 1966



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L+T+K LD E    Y + V A +    A   A  +V + I D NDN+P F   +Y   
Sbjct: 671 GQLMTRKALDRETMANYEIFVIARDQGAPAPQSATATVCLSISDINDNSPEFYPKHYIYT 730

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E A +    +      L + A D+D   NAL+
Sbjct: 731 LKEEADVAPNSMRTL---LNVTATDRDVGDNALI 761



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    YNL + A  T +       +V + + D NDN P F+     GY+
Sbjct: 3609 GEISTAVLLDREDIAYYNLVIGAIDTGLPPQTGTATVRIDLDDINDNGPTFSSDGLLGYI 3668

Query: 78   SEAAPIGALVLT 89
            SE  P G  ++T
Sbjct: 3669 SENEPAGTSIIT 3680



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 56   VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            + ILD NDN P F    Y+  V+E A IGA+VL
Sbjct: 2273 IKILDVNDNIPVFDPKQYSASVAENASIGAMVL 2305



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVL-LTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GVL + +  LDYE    Y + V A  ++    + V  + +++ D NDN P   +L Y   
Sbjct: 2766 GVLSVGQDGLDYELAHQYEIWVAAADSDRPSLRTVMKLTINVTDANDNPPVMEKLIYNAE 2825

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E         T   L + I+A+D+DS  N 
Sbjct: 2826 IMEEE-------TPPQLIVAIKAKDRDSGENG 2850



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 26/106 (24%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTPYFTQLN 72
            GV+ T + +D EA   + L+V AT+ A         + + +VIV   D NDN P F  +N
Sbjct: 1555 GVIYTLREIDREAIDNFRLTVVATDQAQPSDRQLATEKLVTVIVE--DVNDNAPIFVSMN 1612

Query: 73   YTGYVSEAAPIGALVLTNTSLP--------LVIRAEDKDSETNALL 110
                   AA +  L+  N S+P        + + A D DS +N L+
Sbjct: 1613 -------AAILPTLL--NGSIPPGSIGGYVMQVLARDADSSSNGLV 1649


>gi|410306228|gb|JAA31714.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
 gi|410352063|gb|JAA42635.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
          Length = 927

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|297295292|ref|XP_001089886.2| PREDICTED: protocadherin beta-7-like isoform 1 [Macaca mulatta]
          Length = 795

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS +NA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGSNA 484



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGSLHLKAELDYEAIQTYTLTIQAKDGGGLSGKCTVVVEVTDINDNRPELLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             ++E         ++ ++  V R  D+DS  N 
Sbjct: 354 SPIAEN--------SSETVVAVFRIRDRDSGNNG 379



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F Q  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDINDNAPDFLQSLYQVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSIVVS-------VSARDLDTGSNG 275


>gi|296472887|tpg|DAA15002.1| TPA: protocadherin-related 15 isoform 4 [Bos taurus]
          Length = 1537

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G       S+ + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPTFASLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 434



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1087 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDKDT 1173



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 518



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 829 EENLPAGTTFLQ-------IEAKDVDLGAN 851



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 577 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 636


>gi|262263228|tpg|DAA06605.1| TPA_inf: protocadherin gamma a10 isoform [Anolis carolinensis]
          Length = 942

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T++PLD E    YN+++TA +  G  A+ +   + + +LD NDN P F +  YT Y  
Sbjct: 406 LVTERPLDREEVAAYNVTITAVD-EGTPALSTSETISLKVLDTNDNPPLFVKSTYTSYFQ 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P GA +++       ++A D D E NA +
Sbjct: 465 ENNPRGASIIS-------LKAHDLDWEENARI 489



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G +L    LDYE + +Y   V AT+  G      V++ ++D NDN P  T     
Sbjct: 296 LNSTTGEILLIGNLDYEESSLYEFEVQATDGGGLSNRTKVVIFVIDLNDNAPELTMTFAI 355

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E +P G  V        ++   D+DS  N 
Sbjct: 356 SSVPENSPKGTTV-------AILNVRDRDSGVNG 382



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           LL +K LD E   IY+L + AT+        ++ +HI   D NDN P F Q  Y   V+E
Sbjct: 196 LLLEKALDRETQPIYDLILIATDGGDPVRSGTLQIHINVFDANDNAPIFGQSAYEASVNE 255

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P    +        V+RA D D   NA
Sbjct: 256 NIPKWTTI-------AVVRATDLDEGINA 277


>gi|194591875|gb|ACF76477.1| protocadherin-15-CD2 isoform 2 [Homo sapiens]
          Length = 1520

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 829 EENLPAGTTILQ-------IEAKDVDLGAN 851



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|218505787|ref|NP_001136241.1| protocadherin-15 isoform CD2-1 precursor [Homo sapiens]
          Length = 1790

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 530



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1099 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1159 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1185



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 841 EENLPAGTTILQ-------IEAKDVD 859



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 589 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 648

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 649 N-------LQATDREGDSITYAIENG 667



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 878 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 938 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 966


>gi|73949409|ref|XP_535217.2| PREDICTED: protocadherin gamma-C5 isoform 2 [Canis lupus
           familiaris]
          Length = 944

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD E T  Y + + A++ AG+    A  ++ ++I D NDN PYFTQ  YT Y+ 
Sbjct: 406 LLTSQPLDRETTSHYIIELLASD-AGSPPLHAHLTIRLNISDVNDNAPYFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+        ++ A D D+  NA L
Sbjct: 465 ENRPPGSLL-------CIVAASDPDTGDNAHL 489



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD EA   + L +TA +    A++  ++I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDREAQARHQLVLTAVDGGVPARSGTTLISVIVLDVNDNAPAFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            APIG L+L        + A D D  TN  LD
Sbjct: 254 NAPIGTLLLR-------LNATDPDEGTNGQLD 278



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCMIQVDVGDANDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    + E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPILESTPVGTVV-------GLFNVRDRDSGRNG 383


>gi|410266136|gb|JAA21034.1| protocadherin gamma subfamily B, 7 [Pan troglodytes]
          Length = 925

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|380014510|ref|XP_003691272.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-like wing polarity
           protein stan-like [Apis florea]
          Length = 3167

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFT 69
           + P  GV+ T+ PLD E T +Y + ++ ++ A        A  +++V +LD NDN P FT
Sbjct: 425 IDPRTGVVTTRTPLDREKTEVYTVILSVSDQATPPSARKTANATLVVRVLDDNDNYPQFT 484

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNA 108
           +  Y+ ++ E        L  T+ P++  IRA D DS  NA
Sbjct: 485 ERTYSAWIPED-------LDYTANPVIARIRATDADSGNNA 518



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLDYE+TR Y + + A +  G+ A      ++VH+ D NDN P F   ++   VSE  P
Sbjct: 546 KPLDYESTRSYKIVIRAQD-GGSPARSNTTQLLVHVGDVNDNAPRFYTSHFQESVSENVP 604

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNALL 110
           +G  +L        I+A D D   NA +
Sbjct: 605 VGYSILR-------IQAYDADEGANAQI 625



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+VTA++  G      V V+I D N+ +P F    Y+  V E
Sbjct: 756 GLITIAQPLDYKQEKRFVLTVTASDSGGRTDTALVYVNISDANNFSPVFENAPYSVSVFE 815

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            APIG  V       LV+ A D D   NA
Sbjct: 816 DAPIGTTV-------LVVSATDSDVGKNA 837



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L T K LD E    Y  +V A +       A  +VI+ + D NDN PYF   NY   V
Sbjct: 651 GWLYTTKQLDREQCSRYQFTVIAADSGEISKSASATVILTVTDVNDNDPYFDPKNYESVV 710

Query: 78  SEAAPIGALVLTNTS 92
           SE  P G  V + T+
Sbjct: 711 SEDDPPGTPVTSVTA 725



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           ++P  G + T +PLD E    Y L+VTA +  +        V + + D NDN P F    
Sbjct: 857 INPQTGAITTTRPLDRELVPAYLLTVTARDGGVPPLSDTTDVEISVTDVNDNAPVFEAPQ 916

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y G + E   +G  VL        + A D D++ N 
Sbjct: 917 YQGSIPEDVLVGTSVLR-------VSATDADTDLNG 945



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G + T+  LD E+  ++   V A +          ++ V++LD ND+ P F    
Sbjct: 311 LDPVTGRVTTRARLDRESVDVHYFRVLAVDDSFPPRTGTTTLQVNVLDTNDHAPSFEWPE 370

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
               + E  P+G+ V+T       ++A D+D+  NA ++
Sbjct: 371 EEASIREGVPVGSTVVT-------VKATDQDAGRNAEVE 402



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T KPLD E+   Y L   A +        V  V + I D ND+ P F       Y+
Sbjct: 966  GIIRTAKPLDRESVGKYVLKAVAMDRGSPSLSTVAPVTIKIEDVNDSPPXFENDKIILYI 1025

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E +P+G+ V         I A D D   NA++
Sbjct: 1026 AENSPVGSTVGE-------IYAHDPDEGPNAVV 1051


>gi|297676249|ref|XP_002816052.1| PREDICTED: protocadherin gamma-B1 [Pongo abelii]
          Length = 810

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y L V A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLGVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSELGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    Y L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPELLLEKPLDREHQSSYRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +HI D NDN P F Q +Y  +
Sbjct: 397 YYKLVIGGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIGALV 87
           V+E  P GA +
Sbjct: 457 VAENNPPGASI 467


>gi|443684191|gb|ELT88200.1| hypothetical protein CAPTEDRAFT_144602, partial [Capitella teleta]
          Length = 377

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 12/101 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTAT--NMAGAKAVCSVIVHILDRNDNTPYF---T 69
           L P  G L ++  LD E   +Y+L++ AT  N     + CSV+++I+D NDN P F   T
Sbjct: 215 LDPLTGSLKSRTSLDREKQSVYHLAIIATDQNQPALSSSCSVVIYIMDENDNKPVFTFPT 274

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + N T YVS   P    +LT       ++A D+D   NA++
Sbjct: 275 ESNNTIYVSNKIP-KDYILTK------LQATDEDVSRNAMI 308



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           +LT K LD E    YNL++   +  G+    A+  + V+I D NDN+P F Q +Y+  + 
Sbjct: 13  VLTAKVLDREMIAKYNLALICKD-GGSDPLIAIQHLQVNIDDVNDNSPIFGQTSYSATLI 71

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E + IGA V         + A DKD+  NA
Sbjct: 72  ENSYIGAFVTQ-------VNATDKDAGPNA 94



 Score = 40.8 bits (94), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G +  ++ +D+E    + L V AT+    +   S  V++ I D ND TP FT+  ++  +
Sbjct: 114 GRVTARRSMDHEEHENFQLYVNATDHGSPRRSSSALVVISIEDVNDETPTFTESLFSFSI 173

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            E  P G  V         + AED+DS
Sbjct: 174 EENKPSGEYVGQ-------VAAEDRDS 193


>gi|348537988|ref|XP_003456474.1| PREDICTED: neural-cadherin-like [Oreochromis niloticus]
          Length = 2929

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           + P  GV+ T    D E  R Y LSVTAT+ A      +C + V I D+NDN P F    
Sbjct: 808 IDPDTGVITTAVSFDRERQREYTLSVTATDQAEEPLIGICQITVQISDQNDNDPKFENSR 867

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y  ++ E  P+G   L          A D D  +NA +
Sbjct: 868 YQYFLREDTPVGTSFLRAA-------AHDDDQGSNAAI 898



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
            PV+ +  +KP        +L  + LDYE TR + L V   N+A     +  +V V++ D 
Sbjct: 1011 PVRFY--MKPNRADGSASILVAENLDYETTRFFTLRVRVQNVAAVPLASFTTVYVNVTDV 1068

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALV 87
            NDN P+F    Y   V E A +G  V
Sbjct: 1069 NDNVPFFLSSTYEATVPEGAQMGTSV 1094



 Score = 44.3 bits (103), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 13/96 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   +PLDYE  + Y L + A++         V+V +++RND  P F+Q  Y 
Sbjct: 1240 VEPEVGTIFVAQPLDYEMEQRYELRLVASDGKWENETL-VVVQVVNRNDEAPVFSQTEYH 1298

Query: 75   GYVSEAAPIGALVLTNTSLP---LVIRAEDKDSETN 107
              V E           T LP   L + A D D E +
Sbjct: 1299 AAVMEEL---------TQLPVFILEVSATDPDQEAD 1325



 Score = 36.2 bits (82), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATR-IYNLSVTATNM-AGAKAVCSVIVHI 58
           + +P  LF+I + +     G L   + +DYE    ++ L V A+    G  +V  V+VHI
Sbjct: 481 LVNPGNLFSINQES-----GALSLTRNVDYEGGHNLHTLQVRASEPDTGLSSVAEVVVHI 535

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D ND TP F    YT        I   +   TSL L + A D DS  N+
Sbjct: 536 TDENDCTPEFLHSIYT-----RDNIPESIAPGTSL-LQVLARDCDSGINS 579


>gi|328778418|ref|XP_624236.3| PREDICTED: protocadherin-like wing polarity protein stan-like [Apis
           mellifera]
          Length = 3163

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFT 69
           + P  GV+ T+ PLD E T +Y + ++ ++ A        A  +++V +LD NDN P FT
Sbjct: 425 IDPRTGVVTTRTPLDREKTEVYTVILSVSDQATPPSARKTANATLVVRVLDDNDNYPQFT 484

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNA 108
           +  Y+ ++ E        L  T+ P++  IRA D DS  NA
Sbjct: 485 ERTYSAWIPED-------LDYTANPVIARIRATDADSGNNA 518



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLDYE+TR Y + + A +  G+ A      ++VH+ D NDN P F   ++   VSE  P
Sbjct: 546 KPLDYESTRSYKIVIRAQD-GGSPARSNTTQLLVHVGDVNDNAPRFYTSHFQESVSENVP 604

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNALL 110
           +G  +L        I+A D D   NA +
Sbjct: 605 VGYSILR-------IQAYDADEGANAQI 625



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+VTA++  G      V V+I D N+ +P F    Y+  V E
Sbjct: 756 GLITIAQPLDYKQEKRFVLTVTASDSGGRTDTALVYVNISDANNFSPVFENAPYSVSVFE 815

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            APIG  V       LV+ A D D   NA
Sbjct: 816 DAPIGTTV-------LVVSATDSDVGKNA 837



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L T K LD E    Y  +V A +       A  +VI+ + D NDN PYF   NY   V
Sbjct: 651 GWLYTTKQLDREQCSRYQFTVIAADSGEISKSASATVILTVTDVNDNDPYFDPKNYESVV 710

Query: 78  SEAAPIGALVLTNTS 92
           SE  P G  V + T+
Sbjct: 711 SEDDPPGTPVTSVTA 725



 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           ++P  G + T KPLD E    Y L+VTA +  +        V + + D NDN P F    
Sbjct: 857 INPQTGAITTTKPLDREIVPAYLLTVTARDGGIPPLSDTTDVEISVTDVNDNAPVFEAPQ 916

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y G + E   +G  VL        + A D D++ N 
Sbjct: 917 YQGSIPEDVLVGTSVLR-------VSATDADTDLNG 945



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T KPLD E+   Y L   A +        V  V + I D ND+ P F       Y+
Sbjct: 966  GIIRTAKPLDRESVAKYILKAVAMDRGSPSLSTVVPVTIKIEDVNDSPPAFENDKIILYI 1025

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E +PIG+ V         I A D D   NA++
Sbjct: 1026 AENSPIGSTVGE-------IYAHDPDEGPNAVV 1051



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G + T+  LD E+  ++   V A +          ++ V++LD ND+ P F    
Sbjct: 311 LDPVTGRVTTRARLDRESVDVHYFRVLAVDDSFPPRTGTTTLQVNVLDTNDHAPSFEWPE 370

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
               + E  P+G+ V+T       ++A D+D+  NA ++
Sbjct: 371 EEASIREGVPVGSTVVT-------VKATDQDAGRNAEVE 402


>gi|119574536|gb|EAW54151.1| protocadherin 15, isoform CRA_a [Homo sapiens]
          Length = 1401

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 829 EENLPAGTTILQ-------IEAKDVDLGAN 851



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655


>gi|296472884|tpg|DAA14999.1| TPA: protocadherin-related 15 isoform 1 [Bos taurus]
          Length = 1789

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G       S+ + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPTFASLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+GA +    N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTTPLRIVALDKDIE 439



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1099 GVIYVNAPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1158

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A DKD+
Sbjct: 1159 KFYIGGVSEDARMFASVLR-------VKATDKDT 1185



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 479 QPVDREEQQTYTFSITAFDGVQESEPVIVNIRVMDANDNTPTFPEISYDVYV 530



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 781 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G   L        I A+D D   N
Sbjct: 841 EENLPAGTTFLQ-------IEAKDVDLGAN 863



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  IGA++L
Sbjct: 589 RTYALTVQAADNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRIGAVLL 648


>gi|218505789|ref|NP_001136242.1| protocadherin-15 isoform CD2-2 precursor [Homo sapiens]
          Length = 1539

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G  +L        I A+D D   N
Sbjct: 829 EENLPAGTTILQ-------IEAKDVDLGAN 851



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954


>gi|390469946|ref|XP_002754762.2| PREDICTED: protocadherin Fat 3 [Callithrix jacchus]
          Length = 1221

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F QL Y 
Sbjct: 422 INPRSGLIVTAQPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQLLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +V+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 TFVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSSIGTEIIQ-------VEARDKDLGSNG 864



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAG---AKAVCSVIV 56
           +++ +    +L  A++   GV+ T + LD+E++  IY   V A++       ++  +V +
Sbjct: 507 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTI 566

Query: 57  HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            I + NDN+P F ++   G +S   P+G 
Sbjct: 567 RIGNVNDNSPLFEKVACQGVISYDFPVGG 595



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 17/104 (16%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 972  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1031

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
            G V E + IG  VL        + A+D+DS  +     ++ DGS
Sbjct: 1032 GSVKENSRIGTSVLQ-------VTAQDEDSGRDGEIQYSIRDGS 1068


>gi|395817395|ref|XP_003782157.1| PREDICTED: protocadherin beta-18-like [Otolemur garnettii]
          Length = 788

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T++PLD E    YN+++T T++     K   ++ V + D NDNTP 
Sbjct: 393 LLKPTFKNFY-TLITERPLDREMRSEYNITITVTDLGTPNLKTEQNITVLVSDVNDNTPT 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FT+ +YT +V E    A  IG            I A D+DS TNA
Sbjct: 452 FTETSYTLFVRENNSPALHIGT-----------ISATDRDSGTNA 485



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           Y  L+  + LD E    + L+++A +      +G   +C V+   LD NDN P F +L Y
Sbjct: 191 YPELVLDQSLDREKEPEFCLTLSAFDGGSPPRSGTTLICVVV---LDINDNAPKFEKLVY 247

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E +P+ +LV+        + A D D+  N  L
Sbjct: 248 EVQIPENSPVDSLVIK-------VSATDLDAGINGEL 277



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +HP  G +  K  LD+E    Y +++ A +        +++V ++D NDN P     + T
Sbjct: 294 IHPTSGEVHLKALLDFELIPSYTINIQAIDGGSLSGKSTILVRVVDVNDNPPEIAMTSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E +    +V        V    D+DS  N  +
Sbjct: 354 SPIPENSSPEVVV-------AVFSVRDQDSGENGRM 382


>gi|218505791|ref|NP_001136243.1| protocadherin-15 isoform CD3-1 precursor [Homo sapiens]
          Length = 1682

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 404

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 439



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 523



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D N++ P F +
Sbjct: 1092 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1152 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1178



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +L        I A+D D
Sbjct: 834 EENLPAGTTILQ-------IEAKDVD 852



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 582 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 641

Query: 89  TNTSLPLVIRAEDK--DSETNALLDG 112
                   ++A D+  DS T A+ +G
Sbjct: 642 N-------LQATDREGDSITYAIENG 660



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ALHP  G L   + LDYEA      S+T    A ++ G     + +V V + D ND  P 
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F++  Y G V+  A  G  + T       + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959


>gi|348514343|ref|XP_003444700.1| PREDICTED: protocadherin-10-like [Oreochromis niloticus]
          Length = 659

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 17/114 (14%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           L P+L      L+TK PLD E    Y L++TA + AG   + S   + V + D NDN+P 
Sbjct: 406 LSPSLQDKMFSLVTKSPLDREKQSQYELTITAKD-AGEPQLSSEKTISVTVSDVNDNSPE 464

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGSTN 115
           F+   YT YV+E    GA V +       I+A D+D   NA      + DGS +
Sbjct: 465 FSLSPYTFYVTEGNNPGASVCS-------IKASDRDENDNARISYHIIRDGSED 511



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 6/79 (7%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +L+ +K LD E    + LS+TA  + G K    +  +++V++LD NDN P F++ +Y+  
Sbjct: 202 ILVVQKSLDRETAGSHVLSLTA--LDGGKPPKSSEMNILVNVLDINDNAPAFSKDDYSVT 259

Query: 77  VSEAAPIGALVLTNTSLPL 95
           ++E  P+G +V+   ++ L
Sbjct: 260 LNENTPLGTIVVQVNAIDL 278


>gi|301621390|ref|XP_002940038.1| PREDICTED: protocadherin gamma-B1-like [Xenopus (Silurana)
           tropicalis]
          Length = 719

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G + T   LD+E  + Y +SV A +  G      V+V I+D NDN P  +  + +
Sbjct: 298 INPTNGEIRTTSGLDFETVQNYEISVEAMDGGGFVTHSKVLVEIIDENDNAPEISIASLS 357

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             + E +P G L+        +I+  D+DSE N  +D
Sbjct: 358 ATIPEDSPTGTLI-------ALIKVHDQDSEDNGEVD 387



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+ +K LD E   ++ L +TA +        S ++ I+  D NDN P FT+  Y   +SE
Sbjct: 196 LVLEKYLDRETQNLHKLFLTAFDGGNPVRSGSALIRIIISDANDNIPVFTKEVYKVRISE 255

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +PI + V+        + A DKD   N+ +
Sbjct: 256 NSPINSTVIR-------VNATDKDEGLNSQI 279



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  ++T   LD E T  YN+++ +T+    K   V  + ++I D NDN P F +  Y  Y
Sbjct: 405 YYKIITTSFLDRENTSQYNITILSTDRGSPKLSTVKHIRLNISDVNDNAPIFKKSTYVAY 464

Query: 77  VSE 79
           +SE
Sbjct: 465 LSE 467



 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTP 66
           GVL  ++  DYE  + + + +TA +  G+ ++ S   +++HI+D+NDN P
Sbjct: 516 GVLYAQRSFDYEHDKEFQIGITARDH-GSPSLSSNTTLVIHIIDQNDNAP 564


>gi|193785246|dbj|BAG54399.1| unnamed protein product [Homo sapiens]
          Length = 725

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A   + + ILD N+ +PYFT  +
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 377

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+GA +  + +L  PL I A DKD E
Sbjct: 378 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 412



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 496



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 35.0 bits (79), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 14/87 (16%)

Query: 34  RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
           R Y L+V A + A       ++C+V + +L  N+ +P  F QL Y+  +SEA  +GA++L
Sbjct: 555 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 614

Query: 89  TNTSLPLVIRAEDK--DSETNALLDGS 113
                   ++A D+  DS T A+ +G 
Sbjct: 615 N-------LQATDREGDSITYAIENGD 634


>gi|449267270|gb|EMC78236.1| Protocadherin alpha-C2, partial [Columba livia]
          Length = 982

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 14/98 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYVSE 79
           L+T+  LD+E    YN++VTAT+          ++H  I D NDN P F +  Y+ Y+ E
Sbjct: 398 LVTQGKLDHEKAAAYNITVTATDSGTPPLSSQKVIHVDISDINDNPPRFEEPVYSVYIPE 457

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDG 112
             P+GAL+ T       I+A D D   NA     LLDG
Sbjct: 458 NNPLGALMCT-------IKATDPDVAENAYVSYSLLDG 488



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILD 60
           QLF++      P  G +     LDYE    Y + V AT+     MAG    C V+V+I+D
Sbjct: 283 QLFSV-----DPHSGEVRVNGTLDYEEASSYEIYVQATDQGPVSMAGH---CKVLVNIVD 334

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALV 87
            NDN P     +    V E A  G +V
Sbjct: 335 ANDNVPEVVLTSLYSPVPEDAKAGTVV 361



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++PLD E + +  L +TA +           + V ++D NDN P F +  YT  + E
Sbjct: 186 LVLQQPLDREQSALQQLVLTAVDGGDPPKSGTAQISVRVMDTNDNPPAFDRSTYTVSLLE 245

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A  G LV+        + A D D  +N 
Sbjct: 246 NALPGTLVVK-------LNASDPDEGSNG 267


>gi|345320270|ref|XP_001519499.2| PREDICTED: protocadherin gamma-C4 [Ornithorhynchus anatinus]
          Length = 867

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           AL P  G + TK  LD+E  + Y+L + A +  G    C+V + ILD NDN P  T  + 
Sbjct: 293 ALDPVSGEISTKGILDFEGIKGYSLVLEAKDGGGLVTQCTVEIEILDENDNAPEVTFTSI 352

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + E + +G ++        +IR  D+DS  N 
Sbjct: 353 SSPIPEDSELGTVI-------ALIRTRDRDSGDNG 380



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+  KPLD E    Y+L +TA +  G   V S    + +++ D NDN P F+Q  Y 
Sbjct: 191 YAELIVGKPLDRETQNSYHLVLTAVD--GGDPVLSGTVEIRINVTDANDNAPVFSQDVYK 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E+ P G+ VL        + A DKD   NA
Sbjct: 249 VSLRESLPPGSPVLR-------VEATDKDEGANA 275



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E T  YN+++T +  AG+  + S   V +++ D NDN P F + ++  
Sbjct: 401 YYKLMTDSVLDREQTAEYNITITRST-AGSPPLSSQRTVSLNVSDVNDNAPAFFRRSHEV 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V E    G L+ +       + A D DS  N L+
Sbjct: 460 FVQENNRPGVLLCS-------LAASDPDSGLNGLI 487


>gi|341896095|gb|EGT52030.1| hypothetical protein CAEBREN_12407 [Caenorhabditis brenneri]
          Length = 4597

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            +L+P  GVL   +PLD+E+  +  L+V A  + +   ++   V + ++D NDN P F + 
Sbjct: 3416 SLNPQTGVLTLAQPLDFESLSVLKLTVIAKDSGVPPLESEAQVEISVMDENDNAPKFEKE 3475

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
             Y+G V E   IG  V++       ++A D DSE
Sbjct: 3476 KYSGKVKENTKIGEKVMS-------VKAIDADSE 3502



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 44   NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            N  G +    ++  I+  N ++P F +  Y G + E  P G+ VL+   LPLVI A D+D
Sbjct: 1638 NSEGQQDSAKIVAKIIRTNQHSPIFRKQVYRGTIRENMPPGSSVLSKKLLPLVISATDED 1697

Query: 104  SETNALL 110
            S +N L+
Sbjct: 1698 SGSNGLV 1704



 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTG 75
            P G +L  +P+DYE  + YN+ V A +      V   ++ I  +D ND+ P F   N T 
Sbjct: 2244 PQGDILVAQPIDYEKIKKYNMKVIAKDGGRPPLVSEALLEITVIDENDHAPVFDDCNMTA 2303

Query: 76   YVSEAAPIGALVL 88
             V E   IG  +L
Sbjct: 2304 VVQEGEAIGHRLL 2316



 Score = 45.4 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K  + P  G ++  +PLD+EA R    +V     A  K+  + +V+I D NDN PYF   
Sbjct: 1406 KIRVEPSSGNVIVMEPLDFEAARRIR-AVVQVQQANMKSFATFLVNINDENDNAPYFVDH 1464

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                +V E   +  ++ T T+        DKD   N ++
Sbjct: 1465 TAWAFVDENDSVDDVLATVTAF-------DKDRGENGIV 1496



 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+   K LD EA   +N +   +N    K   ++IV+++D+NDNTP F +  Y+  V E
Sbjct: 3322 GVVTAVKSLDSEAIGYFNFTAVVSN-GKFKDKATIIVNVIDQNDNTPTFEKSTYSMKVME 3380

Query: 80   AAPIG 84
            +  +G
Sbjct: 3381 SESVG 3385



 Score = 43.9 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +L  +P+DYE  + YN+ V A +      V   ++ I  +D ND+ P F   N T  V
Sbjct: 3539 GDILVAQPIDYEIIKKYNMKVIAKDGGRPPLVSEALLEITVIDENDHAPVFDDCNMTAVV 3598

Query: 78   SEAAPIGALVL 88
             E   IG  +L
Sbjct: 3599 QEGEAIGYRLL 3609



 Score = 41.6 bits (96), Expect = 0.062,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G +  K     EAT  Y   V A  +      +KA   +I+ ++D NDN P F +  Y+G
Sbjct: 2128 GEITLKSSKTLEATE-YTFEVEAREVTRPKMTSKAQVKIIISVMDENDNAPKFEKEKYSG 2186

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
             V E   IG  V++       ++A D DSE
Sbjct: 2187 KVKENTKIGEKVMS-------VKAIDADSE 2209



 Score = 36.6 bits (83), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG-------AKAVCSVIVHILDRNDNTPYFTQLN 72
            G + T   LD EA   Y ++V A +           KAV  V + +LDRND+ P   +  
Sbjct: 986  GTVRTTHILDREAKSAYWITVEARDAKNNLYKDPRRKAVLHVFIRVLDRNDHRPVAKKPM 1045

Query: 73   YTGYVSEAAPIGALVL 88
            Y   V+E +P   +++
Sbjct: 1046 YIASVAENSPANVVIV 1061


>gi|198460509|ref|XP_001361746.2| GA11265 [Drosophila pseudoobscura pseudoobscura]
 gi|198137039|gb|EAL26325.2| GA11265 [Drosophila pseudoobscura pseudoobscura]
          Length = 3592

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+ T+  LD E +  Y+L VTA++MA A+     A  SV+V +LD NDN P F++  YT
Sbjct: 533 GVISTRSSLDRETSDSYHLLVTASDMAAAQSERKTATASVLVKVLDDNDNYPQFSERTYT 592

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E    G    +  +    IRA D D   NA +
Sbjct: 593 VQVPEDQWGG----SEDNTVAHIRATDADQGNNAAI 624



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   + LDY+  + + L+VTAT+  G     +V ++I D N+  P F    Y+  V E
Sbjct: 854 GLITIAQSLDYKQEKRFLLTVTATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFE 913

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            AP+G  V       LV+ A D D   NA +  S N
Sbjct: 914 DAPVGTTV-------LVVSATDSDVGINAQITYSLN 942



 Score = 45.4 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G + T K LD E+  +Y+L+  A +        SV V I   D ND+ P F    
Sbjct: 1063 IDPTSGTVRTNKGLDRESVAVYHLTAIAVDKGSPPLSSSVEVQIRLEDVNDSPPTFASDK 1122

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T YV E +P+G++V         I A D D   NA++
Sbjct: 1123 ITLYVPENSPVGSVVGE-------IHAHDPDEGVNAVV 1153



 Score = 43.1 bits (100), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KPLDYE+ R Y L + A +           ++V+++D NDN P F    +   V E  P+
Sbjct: 650 KPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPV 709

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G  ++        ++A D D   NA
Sbjct: 710 GYNIIR-------VQAYDSDEGPNA 727



 Score = 41.6 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            +++P  G ++T  PLD E T  Y L+VTA +  G+ ++     V + + D NDN P F  
Sbjct: 956  SINPQTGAIVTNAPLDRETTSGYLLTVTAKD-GGSPSLSDTTDVEISVTDVNDNAPVFKN 1014

Query: 71   LNYTGYVSEAAPIGALVL 88
              Y   + E A +G  V+
Sbjct: 1015 PLYQSSILEDALVGTSVI 1032



 Score = 41.2 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ T   LD E   ++   V AT+          ++ V++LD ND++P F    +   +
Sbjct: 419 GVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASI 478

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E A +G+ V+T       +RA D+D   NA ++
Sbjct: 479 REGATVGSTVIT-------LRATDQDIGKNAEIE 505



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A+ P  G + T K LD E    +   V A +  +    A  SV++ + D NDN P F   
Sbjct: 743 AVDPRTGWVQTIKQLDREEQSRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPTFNPK 802

Query: 72  NYTGYVSEAAPIGALVLTNTS 92
            Y   V E  P G  V T T+
Sbjct: 803 YYEANVGEDQPQGTPVTTVTA 823


>gi|449511796|ref|XP_002199166.2| PREDICTED: protocadherin beta-5-like, partial [Taeniopygia guttata]
          Length = 485

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +   KPLD+EA   + +SV AT+  G  A+C V+V ++D NDN P     +++
Sbjct: 160 IDPITGAIKLTKPLDFEAAESHEMSVRATDGGGLSAICKVLVEVVDVNDNAPELVVSSFS 219

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E    G +V        +    D+DS  N  +
Sbjct: 220 SPIPENTVPGTVV-------ALFSVRDRDSGANGKI 248



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ +KPLD E       SV A +           V + ILD NDN P FTQ  Y   V E
Sbjct: 60  LVLEKPLDREEHAEMGFSVIALDGGSPPRSGTTHVKIFILDVNDNAPIFTQEEYIAQVLE 119

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G++VLT       + A D+D+  N 
Sbjct: 120 NMPEGSVVLT-------VLATDQDAGVNG 141



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
           QL   L+PA +  Y  L+T   LD E T  Y LSVTA + AG+  + S     V I D N
Sbjct: 255 QLSFSLRPA-YKNYYELVTVSALDREETPQYILSVTAAD-AGSPPLTSTQTFTVDISDVN 312

Query: 63  DNTPYFTQLNYTGYVSE 79
           DN P F Q +YT YV E
Sbjct: 313 DNAPVFNQTSYTMYVHE 329


>gi|9965298|gb|AAG10032.1|AF282973_3 protocadherin-beta9 [Homo sapiens]
          Length = 536

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
            LKP++   Y +L+T+  LD E+   YN+++T T+M     K   S+ + + D NDN P 
Sbjct: 392 FLKPSVDNFY-ILMTEGALDRESKAEYNITITVTDMGTPRLKTEHSITLQVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  ++ LDYE    Y +++ A +  G  A C+V++ +LD NDN P     + +
Sbjct: 294 INPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V+E +P   +VL       V + +D+DS  N 
Sbjct: 354 NSVAENSP--GIVLA------VFKIKDRDSGENG 379



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E     +L++TA +          ++ + +LD NDN P F Q  Y   
Sbjct: 191 YPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAPQFAQALYETQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E +P+G+L++        + A D DS  NA
Sbjct: 251 APENSPVGSLIVK-------VSAGDADSGVNA 275


>gi|403256582|ref|XP_003920948.1| PREDICTED: protocadherin beta-18-like [Saimiri boliviensis
           boliviensis]
          Length = 596

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T++PLD E    YN+++T T++     K   ++ V I D NDNTP 
Sbjct: 393 LLKPTFKNFYA-LVTERPLDREIRNEYNITITVTDLGTPRLKTEYNITVLISDVNDNTPA 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS +NA
Sbjct: 452 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGSNA 485



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 34/65 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +HP  G +  K PLD+E  + Y +++ A +  G     S++V ++D NDN P     + T
Sbjct: 294 IHPISGEVYLKAPLDFEIIQSYIINIQAIDGGGLFGKASILVQVVDMNDNPPEIAMTSLT 353

Query: 75  GYVSE 79
             + E
Sbjct: 354 SPIPE 358



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    +NL++TA +        + ++H+  LD NDN P F +  Y  +
Sbjct: 191 YPELVLNQSLDREKEAEFNLTLTAVDGGSPPRSGTTLIHVVVLDINDNAPEFEKPVYEVH 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E++P+ +L++        + A D D+  N  L
Sbjct: 251 VPESSPLDSLMIK-------VSATDLDAGINGEL 277


>gi|344238295|gb|EGV94398.1| Protocadherin beta-5 [Cricetulus griseus]
          Length = 1314

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+E T+ YN+ + AT+  G    CSV + +LD NDN P  T  + T  + E
Sbjct: 913 GEIHLKGALDFEETQYYNMEIIATDSGGLSGKCSVTIQVLDVNDNAPKLTISSLTTSIPE 972

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 973 NAPEAVVAVFSVSDP 987



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T   LD E    YN+++T T++   +  A  ++ V + D NDN P 
Sbjct: 99  ILKPSVENFY-TLMTSTALDRENRSQYNITITVTDLGTPRLTAQHTITVQVSDVNDNAPA 157

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           FTQ +YT +V E    A  IG            I A D DS +NAL+
Sbjct: 158 FTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNALI 193



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
          G +L  K LD+E+ + Y + V A +  G      V V ++D NDN P  T      ++ E
Sbjct: 6  GEILLAKTLDFESIQTYTVYVQAIDGGGLSGSSVVFVQVMDLNDNPPELTMSTLNNHIPE 65

Query: 80 AAP 82
           +P
Sbjct: 66 NSP 68



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  + LD E      L++T T++ G         +V + ++D NDN P F Q  Y 
Sbjct: 806 YPELVLDRALDREEQP--ELTLTLTSVDGGSPPRTGTTTVRIEVVDINDNAPQFVQSLYE 863

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             V E +P+ ALVLT +++ L
Sbjct: 864 VQVPENSPVDALVLTVSAMDL 884



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 330 GQLFALRALDYEALQTFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPFVLYPLQNAS 388

Query: 75  GYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E    AA  G LV         + A D+DS  NA L
Sbjct: 389 APCTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 421



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
            G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+
Sbjct: 1045 GQLFALRALDYEALQTFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPF 1094



 Score = 34.7 bits (78), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 12/85 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYF------T 69
           G L   + LDYEA + +   V AT+       ++A+  V+V  LD NDN P+        
Sbjct: 218 GQLFALRALDYEALQTFEFRVGATDQGLPELSSQALVRVLV--LDANDNAPFVLYPLQNA 275

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLP 94
              YT  +  AA  G LV    S P
Sbjct: 276 SAPYTELLPRAAEPGYLVTKAPSAP 300


>gi|332234763|ref|XP_003266573.1| PREDICTED: protocadherin gamma-B1 [Nomascus leucogenys]
          Length = 810

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  G + T   LD+E T  Y L V A +     A C+V + I+D NDN P  T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLGVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 349

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E + +G ++        +I+  DKDS  N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  LL +KPLD E    + L +TA  M G     S   HI     D NDN P F+Q  Y 
Sbjct: 188 YPELLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P G  VL        + A D+D   NA
Sbjct: 246 VSLQENVPWGTSVLR-------VLATDQDEGINA 272



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    L+ E T  YN+++ AT+       +  S+ +H+ D NDN P F Q +Y  +
Sbjct: 397 YYKLVIGGALNREQTADYNVTIIATDKGKPSLSSRTSITLHVSDINDNAPVFHQASYVVH 456

Query: 77  VSEAAPIG 84
           V+E  P G
Sbjct: 457 VAENNPPG 464


>gi|301769907|ref|XP_002920372.1| PREDICTED: protocadherin Fat 4-like [Ailuropoda melanoleuca]
 gi|281339428|gb|EFB15012.1| hypothetical protein PANDA_009099 [Ailuropoda melanoleuca]
          Length = 4980

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++++AT+         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGVLTLAKALDYELCQKHEMTISATDGGWVSRTGYCSVTVNVIDVNDNSPVFFPD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  ++LD NDN P F+  +Y+
Sbjct: 1891 LNPVTGVFNLTRVLDYEAQQYYILTVRAEDGGGQFTTVRVYFNVLDVNDNPPIFSLSSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 22/111 (19%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
            A++   G + + +PLD E    Y L++ +++        SV  I++ILD NDN P F+Q+
Sbjct: 2717 AINHATGEIRSIRPLDREKIPQYVLTIKSSDKGSPSQSTSVKVIINILDENDNAPRFSQI 2776

Query: 72   NYTGYVSEAAPIGALV-------------------LTNTSLPLVIRAEDKD 103
             ++ YV E +P+G  V                   +T+TSLP  I     D
Sbjct: 2777 -FSAYVPENSPLGYTVTRVTTSDEDIGINAVSRYSITDTSLPFTINPSTGD 2826



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGAVSLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGKLSTIASLDREEQAFYSLLVLATDLGSPPQSSMVRINVSLLDVNDNSPVFYPIQ 693

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 694 YFAHIQENEPGGSYITT 710



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 10/84 (11%)

Query: 27   PLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            PLD  A   Y + + A++M   +   S I  V++ D NDN P F QL+Y   +SE+ P+ 
Sbjct: 954  PLDVHAGS-YQIEILASDMGVPQLSSSFILTVYVHDVNDNPPVFDQLSYEVTLSESEPVN 1012

Query: 85   ALVLTNTSLPLVIRAEDKDSETNA 108
            +           ++A DKDS  N 
Sbjct: 1013 SRFFK-------VQAFDKDSGANG 1029



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAAVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPIFAQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELRVIQSLDRETKEHFVLMITATD-SGSPALTGTGTINVIVDDINDNVPTFASKMYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2879 LDCPELPEIGSKVTQ-------VSATDPDEGSNG 2905



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 16/96 (16%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LD E    Y L+V AT+  G  A+ S   V+V +LD NDN P F Q  Y   ++E     
Sbjct: 2112 LDREEVSNYTLTVVATD-KGQPALSSSTEVVVMVLDINDNNPVFVQPLYKVEINEN---- 2166

Query: 85   ALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
               LT T + + + A D D  TN      ++DG+ N
Sbjct: 2167 --TLTGTDI-IQVYAADGDEGTNGQVRYGIVDGNAN 2199



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E    Y L V +++    +   +  SV+V + D NDN P F   
Sbjct: 2410 INPSTGQIITSALLDRETKENYTLVVVSSDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 2469

Query: 72   NYTGYVSEAAPIGALVL 88
             Y  ++    P G+ V 
Sbjct: 2470 PYVTHIPSPTPPGSFVF 2486



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 18/114 (15%)

Query: 8    FAILKP--ALHPPYGVLLTKKPLDYEA------TRIYNLSVTATNMA---GAKAVCSVIV 56
            F +++P   LH   G +   +  D E+      T +++ +V AT+       K   +V V
Sbjct: 1139 FEMVQPDFVLHAISGEITNTRQFDRESLMRQRGTAVFSFTVIATDQGLPQPLKDQATVHV 1198

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++ D NDN P F +  Y   +SE+A        N +  L + A D D   N L+
Sbjct: 1199 YMKDINDNAPKFLKDFYQATISESA-------ANLTQVLRVSASDVDEGNNGLI 1245



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++     +   +   V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKSLDRESQSFYNLVVQVHDLPMLPASRFTSTAHVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTIVFK-------AQATDPDSGPNSYIE 2086


>gi|194580184|gb|ACF75933.1| protocadherin alpha 2 [Mus musculus]
          Length = 629

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD EAT  Y + VTA +      +A  SV V + D NDN P F Q  YT +
Sbjct: 105 YYSLVLDSALDREATADYKVMVTARDGGSPSLRATASVSVEVADVNDNAPVFAQPEYTVF 164

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P GA + T       + A D D++ NAL+
Sbjct: 165 VKENNPPGAHIFT-------VSAMDADAQENALV 191



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 11/92 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
           G + TK  LDYE    Y + V A++  G  A+   C + V ++D NDNTP  +  + +  
Sbjct: 1   GEVRTKGELDYEERTSYEIQVIASDK-GTPAMSGHCKISVKLVDINDNTPEVSITSLSLP 59

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E AP+GA++        +I   D+DS  N 
Sbjct: 60  VQENAPLGAVI-------ALISVSDRDSGVNG 84



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
           ++H   G +   +PLD+E   +    VTA + AG  A+ S +   V +LD NDN P    
Sbjct: 210 SVHAESGKVFALQPLDHEELELLQFQVTARD-AGVPALGSNVTLQVFVLDENDNAPLLLP 268

Query: 69  -TQLNYTGYVSEAAP--IGAL-VLTNTSLPLVIRAEDKDSETNALL 110
              +   G VSE  P  +G+  V+T       +RA D DS  NA L
Sbjct: 269 QGAVGVGGSVSELVPRSVGSGHVVTK------VRAVDADSGYNAWL 308


>gi|301753531|ref|XP_002912649.1| PREDICTED: protocadherin beta-10-like [Ailuropoda melanoleuca]
          Length = 799

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE  + Y ++V A +  G  A C+V V +LD NDN P     +++ YV+E +P   L 
Sbjct: 307 LDYELVKSYKINVQAMDGGGLTATCTVFVEVLDINDNPPELIISSFSNYVAENSPETVLA 366

Query: 88  LTNTSLPLVIRAEDKDSETNA 108
                   V R +D+DS  N 
Sbjct: 367 --------VFRIKDRDSGENG 379



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +LKP++   Y +L+T+  LD E+   YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 LLKPSVENFY-ILMTEGGLDRESQAEYNITITVTDLGTPRLKTQHNLSVTVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           F+Q +YT  V E    A  IG+           + A D+D+  NA
Sbjct: 451 FSQSSYTLRVRENNSPALHIGS-----------VSATDRDAGANA 484



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  K LD E  + + L++T T + G         ++ + ILD NDN P F+Q  Y 
Sbjct: 191 YPELVLDKALDRE--KQHELTLTLTALDGGSPPRSGTTTIRIVILDINDNAPQFSQTIYE 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               E +P+G+L+         + A D DS  NA
Sbjct: 249 TQAPENSPVGSLIAK-------VSAGDVDSGVNA 275


>gi|195035917|ref|XP_001989418.1| GH11711 [Drosophila grimshawi]
 gi|193905418|gb|EDW04285.1| GH11711 [Drosophila grimshawi]
          Length = 5208

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 13/95 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G +   +PLDY+  + Y+L++T  ++      A A+ S+I  + D NDN P F Q  Y G
Sbjct: 3323 GAITIMQPLDYDLMQEYHLNITVEDLGYKPLSAVAMLSII--LTDVNDNPPIFNQSEYHG 3380

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y++E  P+G  V           A DKDS  NA++
Sbjct: 3381 YIAENKPVGTNVFQ-------AHATDKDSPKNAII 3408



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQL 71
            +L+P  G L     LDYE  + Y L V A +        ++ V+  +LD NDNTP F  +
Sbjct: 2004 SLNPQTGALTLTAKLDYEEVQHYILIVQAQDNGQPSLTTTITVYCNVLDLNDNTPLFDPM 2063

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            +Y+  + E  PIG  V+T       + A+D DS  N L++ S
Sbjct: 2064 SYSSEIFENVPIGVEVVT-------VSAKDIDSGNNGLIEFS 2098



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 9/105 (8%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRND 63
            + F  L   L+P  G+L     LD E    Y L++TA +           + + ILD ND
Sbjct: 2252 EAFETLPFTLNPTDGILRVADALDRELRLNYVLNITARDRGDPSLSTQSQLKIKILDEND 2311

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            N P F    Y+  V+E A IGA+VL        + A D+D   N 
Sbjct: 2312 NIPVFDPKQYSASVAENASIGAMVLQ-------VSATDEDEGDNG 2349



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    Y L V A +    +     SV++H+LD+NDN P FT+L Y+  V
Sbjct: 2901 GEIYTTMRLDREEISDYALVVEAVDQGVPQLTGTASVLLHLLDKNDNPPKFTRL-YSLNV 2959

Query: 78   SEAAPIGALVLTNTSLPL 95
            +E A IG+ V++ TS  L
Sbjct: 2960 TENAEIGSFVISVTSSDL 2977



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  +  LD E    Y L+V+ ++       +V  V++H++D NDN P FT   +T 
Sbjct: 1115 PDGYLFVRATLDREERDYYALTVSCSDAGTPSRSSVVPVVIHVIDENDNAPQFTNSTFTF 1174

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E AP    V   T++       D+D   NA L
Sbjct: 1175 NIPENAPADTFVGKLTAV-------DRDIGRNAEL 1202



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           P + ++     LD E    YNL+V A +      KA+  +I+++ D ND+ P F +  Y+
Sbjct: 460 PLFHIVRVNGVLDREEISKYNLTVVAIDKGTPERKAIAHLIINVNDVNDHEPVFEKSEYS 519

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE AP G+ V +       I A D+D+  NA
Sbjct: 520 AVLSELAPTGSFVAS-------IAATDEDTGVNA 546



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 9/87 (10%)

Query: 26   KPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
            +P+D  A   +  +V AT+           VIV + D N   P F+ L+Y   V E  PI
Sbjct: 3224 RPIDVPANSRFEFNVKATDRGVPSQSDQTRVIVIVTDENRYPPEFSALSYQVIVPENEPI 3283

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
            G+ +LT       + A DKD+  N +L
Sbjct: 3284 GSTILT-------VSATDKDNGPNGML 3303



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L     LD E+  I+ L+V A + A    + S   + + +LD NDN P FTQ +    
Sbjct: 1353 GLLTLAHQLDRESQEIHRLTVVAKDAALKHPLSSSANITIIVLDDNDNAPEFTQSSSEIS 1412

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E +P G  ++         RA D D   N+
Sbjct: 1413 VLETSPSGTELMR-------FRASDADQGVNS 1437



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E    YNL + A  T +       +V + + D NDN P FT     GY+
Sbjct: 3640 GEISTASLLDREDIAHYNLVIGAIDTGLPPQTGTATVRIDLDDINDNGPTFTAEGLLGYI 3699

Query: 78   SEAAPIGALVLT 89
            SE  P G  ++T
Sbjct: 3700 SENEPAGTTIMT 3711



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVS 78
            G +L+    DYE  R Y L + A N        +++ VHIL  N+  P F Q  +   VS
Sbjct: 3429 GTILSAASFDYEERRTYMLQIKAKNPDSIMESYAILYVHILGVNEFYPQFVQPVFHFDVS 3488

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
            E + +G  V +       ++A DKD   +     LL GS+N
Sbjct: 3489 ETSAVGTAVGS-------VQATDKDIGEDGRIYYLLVGSSN 3522



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L+T++PLD E    Y + V A +    A   A  +V + I D NDN P F   +Y   
Sbjct: 676 GQLMTRQPLDRETMANYEIFVIARDQGAPAPQSATATVYLSIADINDNNPEFYPKHYIYT 735

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E   + +L        L + A D+D   NAL+
Sbjct: 736 LKENNMLRSL--------LNVTATDRDDGDNALI 761



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 11/97 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
           + P  G+++T  PLD E      LS++A +  G     A   + V ILD ND  P+F Q 
Sbjct: 563 IDPATGLIVTAGPLDREVQASVELSISARD-GGPNPKFAYTQLKVTILDENDEAPHFGQP 621

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                +SE     AL+        ++ A D D  TN 
Sbjct: 622 QMNVSLSEDVAPPALI-------ALLSATDNDQGTNG 651



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 17/107 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTA------TNMAG-AKAVCSVIVHILDRNDNTP 66
           A+ P  G + T + +D E    Y L V A      ++++G A   C+V + ILD NDN P
Sbjct: 895 AIDPSSGRISTARLIDRETQSHYQLIVMARSTNASSSLSGFAYGKCNVHITILDLNDNAP 954

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVI---RAEDKDSETNALL 110
            F Q          A     +  NT++   I   RA D+D+  N+ +
Sbjct: 955 SFAQ-------DRDADAAISLPENTAVGQEIYLSRARDRDAGVNSRI 994



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + LD E    Y L++ A +           V V + D NDN P F    Y   +
Sbjct: 2479 GEIVLLRSLDRELQSEYILTLVAMDTGSPPLSNTGVVSVEVQDINDNGPVFELQYYHALI 2538

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  PIG+LVL     P+   A DKD+  NA L
Sbjct: 2539 EENLPIGSLVLR----PI---ATDKDAGLNAKL 2564



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYE T  Y + V A  ++    + V  + +++ D NDN P   +L Y   + E      
Sbjct: 2806 LDYEQTHQYEIWVEAADSDRPSLRTVTLLNINVTDANDNPPVMEKLIYNAEILEEE---- 2861

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
               T   L + I+A+DKDS  N 
Sbjct: 2862 ---TPPQLIVAIKAKDKDSGDNG 2881


>gi|260802290|ref|XP_002596025.1| hypothetical protein BRAFLDRAFT_84111 [Branchiostoma floridae]
 gi|229281279|gb|EEN52037.1| hypothetical protein BRAFLDRAFT_84111 [Branchiostoma floridae]
          Length = 3422

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G ++T   LD E    +  +VT  +  G +   SV V +LD NDN+P F +  YT  V+E
Sbjct: 1305 GEIITSALLDRETNSTFTFNVTVKDAEGMEDTASVTVVVLDENDNSPLFDRETYTTNVTE 1364

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              P G L+L        + A D+D  +N+
Sbjct: 1365 DKPGGGLILQ-------VTATDEDEGSNS 1386



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY-VS 78
            G+L T + LD E T  Y+L+++ ++    +  C V V ILD+NDNTP F   N + + V 
Sbjct: 1514 GLLNTTQSLDREETSQYSLNISVSDGENVE-FCQVQVTILDQNDNTPQFFPSNVSHFNVE 1572

Query: 79   EAAPIGALV 87
            E+  +G +V
Sbjct: 1573 ESVAVGTVV 1581



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHI--LDRNDNTPYFTQ 70
            +++   G+L++   LD E    Y+L +TATN  A  +   S +V +  LD+NDN+P F  
Sbjct: 2570 SINASSGLLVSTMELDRENISSYSLIITATNYRADPQLNTSTVVEVTVLDQNDNSPTFNS 2629

Query: 71   LNYTGYVSEAAPIGALVL 88
             +Y   +   AP+G+ V+
Sbjct: 2630 SDYAAQIDLTAPVGSEVI 2647



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 20/110 (18%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-------------VIVHILD 60
            AL+   G L T + LD E   +Y L V A  + G     S             + V + D
Sbjct: 2784 ALNNKTGRLYTTRELDREEMPVYTLMVEAILVNGTGGCDSRRRKRAIPANQIVITVEVGD 2843

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             NDN P F+Q +Y   + + APIG  V+        ++A D D+ +NA L
Sbjct: 2844 ENDNPPVFSQSSYVKGIPDDAPIGYTVMQ-------LQASDADTGSNAEL 2886



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           G +     LD +    Y + V A +   A  V + IV+I   + NDN P F Q  YT  V
Sbjct: 787 GNITVSGSLDADTVESYVVVVMAADQGAASRVTTAIVNINVTNVNDNKPQFDQEQYTAQV 846

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSE---TNALLDGS 113
           SEAA  G +V T       ++A D D +   T  + DGS
Sbjct: 847 SEAAGTGTVVAT-------LKATDGDRDAQLTFQIEDGS 878



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           G +     LD +    Y + V A +   A  V + IV+I   + NDN P F Q  YT  V
Sbjct: 465 GNITVSGSLDADTVESYVVVVMAADQGAASRVTTAIVNINVTNVNDNKPQFGQEQYTAQV 524

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSE---TNALLDGS 113
           SEAA  G +V T       ++A D D +   T  + DGS
Sbjct: 525 SEAAGTGTVVAT-------LKATDGDRDAQLTFQIEDGS 556



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD EAT  YN++V AT+M          V V + D ND+ P F+   +  Y+
Sbjct: 2051 GQITTVGQLDREATAEYNITVEATDMGSPPRNTTAMVTVSVEDVNDSPPKFSNSTFEVYI 2110

Query: 78   SEAAPIGALVL 88
             E   IG+ + 
Sbjct: 2111 GETVRIGSSIF 2121



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
            G++     LDYE+ +  N+++T T   G +    AV +V + + D NDN P F   +Y  
Sbjct: 1616 GIISVLANLDYESLQDPNITLTVTASDGGEVPNSAVSTVTISVTDVNDNAPEFDTSHYNF 1675

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             VSE      LV T       + AED D   N 
Sbjct: 1676 QVSENMNASTLVGT-------VFAEDTDEGGNG 1701



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 26/98 (26%)

Query: 30  YEATRIYN-------LSVTATNMAGAKAV------------CSVIVHILDRNDNTPYFTQ 70
           Y+AT + N       L+VTA++     AV             +V++ +LD NDN+P FT 
Sbjct: 674 YQATVVENAPRETPVLTVTASDKDEVYAVETNTTEQYRSPTSTVLITLLDENDNSPTFTA 733

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   V E A IG +V         + A D+DS TN 
Sbjct: 734 DEYNAAVPENARIGVVVTQ-------VTATDRDSGTNG 764



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 26/98 (26%)

Query: 30  YEATRIYN-------LSVTATNMAGAKAV------------CSVIVHILDRNDNTPYFTQ 70
           Y+AT + N       L+VTA++     AV             +V++ +LD NDN+P FT 
Sbjct: 352 YQATVVENAPRETPVLTVTASDKDEVYAVETNTTEQYRSPTSTVLITLLDENDNSPTFTA 411

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   V E A  G +V         + A D+DS TN 
Sbjct: 412 DEYNAAVPENAKNGVVVTQ-------VTATDRDSGTNG 442



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 31   EATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTN 90
            +A+ + ++ V         A  +V + ++D+NDN P F   N    V E A +GA V   
Sbjct: 2375 QASAVLSIMVAVNGTQALTATTTVNITVVDQNDNAPVFDPTNIEADVREDAALGAEV--- 2431

Query: 91   TSLPLVIRAEDKDSETNALL 110
                +VI A D D   NA L
Sbjct: 2432 ----VVITATDADKGRNAEL 2447


>gi|149726260|ref|XP_001504135.1| PREDICTED: protocadherin beta-4 [Equus caballus]
          Length = 795

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  ILKP     Y  L+T+ PLD E+   YN+++T T+M     K   ++ V + 
Sbjct: 383 SIPDNLPFILKPTFKNFY-TLVTESPLDRESQAEYNITITVTDMGSPRLKTQHNITVLVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNT 91
           D NDN P FTQ +YT +V E    A  IG++  T+T
Sbjct: 442 DVNDNAPAFTQTSYTLWVRENNSPALHIGSVSATDT 477



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +   K LD+E  + Y++ + AT+  G     +V++ ++D NDN P  T  + T  + E
Sbjct: 298 GEIRLTKILDFEQIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNAPELTMSSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGDNG 378



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 510 GHLFALRSLDYEALQAFEFGVGATDR-GSPALSSQARVRVLVLDANDNSPFVLYPLQNGS 568

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 569 APCTELVPRAAEAGYLVTK-------VVAVDGDSGQNAWL 601


>gi|57043471|ref|XP_544302.1| PREDICTED: protocadherin beta-7 [Canis lupus familiaris]
          Length = 797

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L  K  L+YEA + Y L++ A +  G    C+V+VH+ D NDN P     + T  ++E
Sbjct: 299 GKLYLKAELNYEAIQTYTLTIQAKDGGGLSGKCTVVVHVTDINDNPPELLMSSLTSPIAE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P         ++  V R  D+DS  NA
Sbjct: 359 NSP--------DTVVAVFRIRDRDSGNNA 379



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+ PLD E+   YN+++T +++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVTESPLDRESQAEYNITITVSDLGTPRLKTQHNITVTVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           F+Q  YT  V E    A  IG            + A D+D+  NA
Sbjct: 451 FSQTTYTLRVRENNSPALHIG-----------TVSATDRDAGANA 484



 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E     +L++TA +        + ++HIL  D NDN P F Q  Y   
Sbjct: 191 YPELVLDRVLDREEVSELSLTLTALDGGSPPRSGTTLIHILVLDVNDNVPEFVQSLYRVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G+LV+        + A D D+ +N 
Sbjct: 251 VPENSPVGSLVVA-------VLARDLDAGSNG 275


>gi|327270421|ref|XP_003219988.1| PREDICTED: protocadherin gamma-B5-like [Anolis carolinensis]
          Length = 808

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E  + Y++ +TA +   +K     +++V + D NDNTP F+Q +Y G 
Sbjct: 193 YAELILLKQLDREEQQTYHMILTAMDGGESKKTGTATILVTVTDINDNTPVFSQASYKGS 252

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG  +L        ++A D D  +NA
Sbjct: 253 LKENSPIGMSILQ-------VKASDSDEGSNA 277



 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  + +D+E  + Y + + A++  G  A C+V + +LD NDN P     + +  V E
Sbjct: 301 GTIILMENIDFEDRQNYVMIMQASDGGGLVAHCNVEIEVLDENDNPPDVILTSISSPVPE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               GA++        +I+  DKDS  N 
Sbjct: 361 DIEPGAVI-------ALIKVHDKDSGENG 382



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + +++  DYE  R + + V A +       +  +V V ILDRNDN+P   Q+ Y   V
Sbjct: 514 GTIYSQRSFDYEQLREFQIEVRAQDGGSPPLSSSATVTVCILDRNDNSP---QILYPSQV 570

Query: 78  SEAAPIGALVLTNTS---LPLVIRAEDKDSETNALL 110
            E + +  +V  +     L   + A D DS  N+ L
Sbjct: 571 PEGSSVFEMVPRSAESGYLVTKVVAVDADSGHNSWL 606


>gi|351705181|gb|EHB08100.1| Protocadherin beta-7 [Heterocephalus glaber]
          Length = 789

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T+ PLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 VLKPSVENFY-TLVTESPLDRETRAEYNITITVTDLGTPRLKTQHNITVQVSDVNDNAPT 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D+DS TNA
Sbjct: 451 FTQTSYTLWVPENNSPALHIG-----------TISATDRDSGTNA 484



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L  K  L+YE T IY+L++ A +  G    C+V+V I D NDN+P     +    ++E
Sbjct: 299 GNLHLKAELNYETTEIYSLTIQAKDGGGLSGKCTVVVEITDINDNSPEILMSSLNSPIAE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P         ++  + R  D+DS  N 
Sbjct: 359 NTP--------ETVVAIFRVRDRDSGNNG 379



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  + LD E     N+++TA +        + +V IL  D NDN P F Q +Y   V E
Sbjct: 194 LVLDQVLDREEMPELNITLTAWDGGSPPRSGTTLVRILVADINDNAPEFVQSSYKVKVPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P+G+LV       + + A D D+ +N 
Sbjct: 254 NTPVGSLV-------IAVSARDLDTGSNG 275


>gi|348582918|ref|XP_003477223.1| PREDICTED: protocadherin gamma-B2-like [Cavia porcellus]
          Length = 820

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T K LD E    YN+++TAT+       +  S+++HI D NDN P F Q  YT +
Sbjct: 401 YYKLVTDKSLDREEISEYNITITATDRGKLPLSSSTSILLHISDVNDNAPVFQQAFYTVH 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD 103
           V+E  P GA +         IRA D D
Sbjct: 461 VAENNPPGASIAQ-------IRASDPD 480



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)

Query: 3   HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           H  QLF + K       G + TK  LD+E    Y L+V A +     + CS+ V ILD N
Sbjct: 287 HVEQLFNLDKRT-----GEITTKDNLDFEIANSYTLNVEAKDPGDLASHCSIQVEILDEN 341

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D+ P     +    + E +P G ++        +I+  D+DS  N 
Sbjct: 342 DSAPEVIVTSIFTPLPEDSPPGTVI-------ALIKTRDRDSGENG 380



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ K  LD E    + L +TA +       +   + + + D NDN P F+Q  Y   
Sbjct: 191 YPELILKHSLDREEHSFHQLILTAVDGGDPPRSSTTQIQIQVTDANDNPPVFSQDVYRVT 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G+ VL        + A D+D   NA
Sbjct: 251 LPEVVPPGSSVLQ-------VTATDQDEGINA 275


>gi|262263220|tpg|DAA06597.1| TPA_inf: protocadherin gamma b1 isoform [Anolis carolinensis]
          Length = 940

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E  + Y++ +TA +   +K     +++V + D NDNTP F+Q +Y G 
Sbjct: 193 YAELILLKQLDREEQQTYHMILTAMDGGESKKTGTATILVTVTDINDNTPVFSQASYKGS 252

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG  +L        ++A D D  +NA
Sbjct: 253 LKENSPIGMSILQ-------VKASDSDEGSNA 277



 Score = 39.3 bits (90), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  + +D+E  + Y + + A++  G  A C+V + +LD NDN P     + +  V E
Sbjct: 301 GTIILMENIDFEDRQNYVMIMQASDGGGLVAHCNVEIEVLDENDNPPDVILTSISSPVPE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               GA++        +I+  DKDS  N 
Sbjct: 361 DIEPGAVI-------ALIKVHDKDSGENG 382



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + +++  DYE  R + + V A +       +  +V V ILDRNDN+P   Q+ Y   V
Sbjct: 514 GTIYSQRSFDYEQLREFQIEVRAQDGGSPPLSSSATVTVCILDRNDNSP---QILYPSQV 570

Query: 78  SEAAPIGALVLTNTS---LPLVIRAEDKDSETNALL 110
            E + +  +V  +     L   + A D DS  N+ L
Sbjct: 571 PEGSSVFEMVPRSAESGYLVTKVVAVDADSGHNSWL 606


>gi|47225790|emb|CAF98270.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 109

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           ++T +  D E  R Y+++VTAT+ A      +C + V ILD+NDN+P F  L Y  ++ E
Sbjct: 1   IVTAQRFDRERQREYSVTVTATDWAEEPLIGICQLTVQILDQNDNSPKFENLRYEYFLRE 60

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +G      TS  L + A D D  TNA +
Sbjct: 61  DTLVG------TSF-LRVAAHDDDFGTNAAI 84


>gi|397518022|ref|XP_003846023.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin beta-11 [Pan
           paniscus]
          Length = 797

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+T  YN+++T T++     K   +  V + 
Sbjct: 384 SIPEDLPFVLKSSVENYY-TLETERPLDRESTAEYNITITVTDLGIPRLKTEHNTTVLVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +VSE    A  IG+           + A D+DS TNA
Sbjct: 443 DVNDNAPTFTQTSYTLFVSENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           PLD+E    Y++ + AT+  G     +V + ++D NDN P  T  + T  + E  P    
Sbjct: 306 PLDFETIESYSIIIQATDRGGLFGKSTVXIQVIDVNDNAPEITVSSITSPIPENTP---- 361

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
                ++ +V   +D DS  N 
Sbjct: 362 ----ETVVMVFSIQDIDSGDNG 379



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  K LDYE   +  LS   T + G          V V ++D NDN+P F Q  Y 
Sbjct: 191 YPELVLDKALDYE--ELPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + +G+L+LT       + A D DS TN 
Sbjct: 249 VKIPENSILGSLILT-------VSAWDLDSGTNG 275



 Score = 35.4 bits (80), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560


>gi|395504776|ref|XP_003756723.1| PREDICTED: protocadherin gamma-A11-like [Sarcophilus harrisii]
          Length = 810

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L K+ LDYE  ++Y L + A +  G      V V ++D NDN P  T  ++T  V+E
Sbjct: 300 GEILIKQSLDYEKAKLYELEIQANDGPGLSGRAKVTVKVVDVNDNAPEVTMTSFTSSVTE 359

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        +    D+DS  N 
Sbjct: 360 NSPPGTIV-------ALFNVHDQDSGENG 381



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T+  LD E    YN++VTA++        V  + + + D NDN P F+Q +Y+ Y
Sbjct: 402 YQRLVTEGVLDREQISEYNITVTASDHGTPPLFTVTHLFLRVTDINDNPPSFSQTSYSAY 461

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P G+ + + T       A D DSE N+ +
Sbjct: 462 IPENNPRGSSIYSMT-------ACDPDSEENSRI 488



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   +Y+L++ A +           + V +LD NDN P FTQ  Y   
Sbjct: 192 YPGLVLEQSLDREEVPVYHLTLMALDGGDPALSGTARIRVVVLDLNDNAPVFTQSVYHVS 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P+G ++L        + A D+D   N 
Sbjct: 252 VPENVPVGTVLLR-------VNATDRDEGING 276


>gi|355691685|gb|EHH26870.1| hypothetical protein EGK_16946 [Macaca mulatta]
          Length = 801

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           LLT+KPLD E+   YN+++T T++   +    + + +L  D NDN P FTQ++YT +V E
Sbjct: 404 LLTEKPLDRESRAEYNVTITVTDLGTPRLTTHLNMTVLVSDVNDNVPAFTQISYTLFVRE 463

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 464 NNSPALHIGS-----------VSATDRDSSTNA 485



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E  + Y +++ A +  G    C++++ ++D ND+ P  T   +T  + E
Sbjct: 300 GEIELKKQLDFEKLQSYEVNIEARDAGGFSGKCTILIQVMDVNDHAPEVTMSAFTSPIPE 359

Query: 80  AAPIGALVLTNTS 92
            AP   + L + S
Sbjct: 360 NAPETVVALFSVS 372



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD EA     L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREAEAELRLTLTALDGGSPPRSGTAQVYIEVVDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +PIG LV+
Sbjct: 252 ISEDSPIGFLVV 263


>gi|223461503|gb|AAI41391.1| Pcdha2 protein [Mus musculus]
          Length = 902

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD EAT  Y + VTA +      +A  SV V + D NDN P F Q  YT +
Sbjct: 404 YYSLVLDSALDREATADYKVMVTARDGGSPSLRATASVSVEVADVNDNAPVFAQPEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P GA + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGAHIFT-------VSAMDADAQENALV 490



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
           K  + P  G + TK  LDYE    Y + V A++  G  A+   C + V ++D NDNTP  
Sbjct: 292 KFQIDPNSGEVRTKGELDYEERTSYEIQVIASD-KGTPAMSGHCKISVKLVDINDNTPEV 350

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + +  V E AP+GA++        +I   D+DS  N 
Sbjct: 351 SITSLSLPVQENAPLGAVI-------ALISVSDRDSGVNG 383



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
           ++H   G +   +PLD+E   +    VTA + AG  A+ S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVFALQPLDHEELELLQFQVTARD-AGVPALGSNVTLQVFVLDENDNAPLLLP 567

Query: 69  -TQLNYTGYVSEAAP--IGA-LVLTNTSLPLVIRAEDKDSETNALL 110
              +   G VSE  P  +G+  V+T       +RA D DS  NA L
Sbjct: 568 QGAVGVGGSVSELVPRSVGSGHVVTK------VRAVDADSGYNAWL 607


>gi|302564845|ref|NP_001180833.1| protocadherin beta-8 precursor [Macaca mulatta]
          Length = 801

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           LLT+KPLD E+   YN+++T T++   +    + + +L  D NDN P FTQ++YT +V E
Sbjct: 404 LLTEKPLDRESRAEYNVTITVTDLGTPRLTTHLNMTVLVSDVNDNVPAFTQISYTLFVRE 463

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 464 NNSPALHIGS-----------VSATDRDSSTNA 485



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E  + Y +++ A +  G    C++++ ++D ND+ P  T   +T  + E
Sbjct: 300 GEIELKKQLDFEKLQSYEVNIEARDAGGFSGKCTILIQVMDVNDHAPEVTMSAFTSPIPE 359

Query: 80  AAPIGALVLTNTS 92
            AP   + L + S
Sbjct: 360 NAPETVVALFSVS 372



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD EA     L++TA +           V + ++D NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREAEAELRLTLTALDRGSPPRSGTAQVYIEVVDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +PIG LV+
Sbjct: 252 ISEDSPIGFLVV 263


>gi|350587824|ref|XP_003482493.1| PREDICTED: protocadherin Fat 4-like [Sus scrofa]
          Length = 1741

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++AT+         CSV V+++D NDN+P F   
Sbjct: 923  AINSSTGILTLAKALDYELCQKHEMTISATDGGWVARTGYCSVTVNVIDVNDNSPVFLPD 982

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 983  EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 1014



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 22/105 (20%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + + +PLD E T  Y L++ +++       A   VI++ILD NDN P F+Q+ ++ +V
Sbjct: 508 GEIRSIRPLDREKTAQYVLTIKSSDKGSPSQSASVKVIINILDENDNAPRFSQI-FSAHV 566

Query: 78  SEAAPIGALV-------------------LTNTSLPLVIRAEDKD 103
            E +P+G  V                   + +TSLP +I     D
Sbjct: 567 PENSPLGYTVTRVTTSDEDIGVNAISRYSIMDTSLPFIINPSTGD 611



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 1028 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 1087

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 1088 YYFEISEAAPKGTIV 1102



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
           ++P  G ++T   LD E    Y L V A++    +   +  SV+V + D NDN P F   
Sbjct: 195 INPSTGQIITSALLDRETKENYTLVVVASDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 254

Query: 72  NYTGYVSEAAPIGALVL 88
            Y  ++    P G+ V 
Sbjct: 255 PYVTHIPSPTPPGSFVF 271



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 605 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRFSRPSYY 663

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               E   IG+ V         + A D D  +N 
Sbjct: 664 LDCPELPEIGSRVTQ-------VSATDPDEGSNG 690


>gi|269995989|ref|NP_001019300.2| protocadherin beta-11 precursor [Pan troglodytes]
          Length = 797

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+T  YN+++T T++     K   +  V + 
Sbjct: 384 SIPEDLPFVLKSSVEN-YYTLETERPLDRESTAEYNITITVTDLGIPRLKTEHNTTVLVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +VSE    A  IG+           + A D+DS TNA
Sbjct: 443 DVNDNAPTFTQTSYTLFVSENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  K LDYE   +  LS   T + G          V V ++D NDN+P F Q  Y 
Sbjct: 191 YPELVLDKALDYE--ELPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + +G+L+LT       + A D DS TN 
Sbjct: 249 VKIPENSILGSLILT-------VSAWDLDSGTNG 275



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           PLD+E    Y++ + AT+  G     +V + ++D NDN P  T  + T  + E  P    
Sbjct: 306 PLDFETIESYSIIIQATDGGGLFGKSTVRIQVIDVNDNAPEITVSSITSPIPENTP---- 361

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
                ++ +V   +D DS  N 
Sbjct: 362 ----ETVVMVFSIQDIDSGDNG 379



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560


>gi|224068293|ref|XP_002191371.1| PREDICTED: protocadherin alpha-C2 [Taeniopygia guttata]
          Length = 954

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLNYTGYVSE 79
           L+T+  LD+E    YN++VTAT+          ++H  I D NDN P F +  Y+ Y+ E
Sbjct: 371 LVTQGKLDHEKAAAYNITVTATDSGSPPLSSQKVIHVEISDINDNPPRFEEPVYSVYIPE 430

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDG 112
             P+GA + T       I+A D D   NA     LLDG
Sbjct: 431 NNPLGAFLCT-------IKATDPDVAKNAYVSYSLLDG 461



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILD 60
           QLF++      P  G +     LDYE    Y + V AT+     MAG    C V+V+I+D
Sbjct: 256 QLFSV-----DPHSGEVRVNGTLDYEEASSYEIYVQATDQGPVSMAGH---CKVLVNIVD 307

Query: 61  RNDNTPYFTQLNYTGYVSEAAPIGALV 87
            NDN P     +    V E A  G +V
Sbjct: 308 VNDNAPEVQLTSLYSPVPEDARSGTVV 334



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++PLD E + +  L +TA +           + V ++D NDN P F +  YT  + E
Sbjct: 159 LVLQQPLDREQSALQQLVLTAVDGGDPPKSGTAQISVRVVDTNDNPPAFDRSTYTVSLLE 218

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G LV+        + A D D  +N 
Sbjct: 219 NSLPGTLVVK-------LNASDPDEGSNG 240


>gi|119514232|gb|ABL75895.1| protocadherin 2G20 [Takifugu rubripes]
          Length = 963

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +    P+DYE  R Y + V A +  G      +I+ ++D NDN P    ++++  +SE
Sbjct: 312 GAITVSGPIDYEKDRKYEVRVEAKDQGGLIGTSKIIIDVIDLNDNPPVINVMSFSSTISE 371

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            AP G  +        V   +D DS+ N  +  S
Sbjct: 372 DAPPGTTI-------AVFNVKDADSDKNGQIKCS 398



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L++ +  D E+   YN++VTAT+        S  +H++  D NDN P F + +Y+ Y
Sbjct: 414 YYNLISDQFFDRESVSKYNITVTATDSGTPPLSTSTTLHLIISDVNDNAPLFEKQSYSAY 473

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E    G  + T       + A D D   NA +
Sbjct: 474 IVENNSPGTSIFT-------VSARDSDWNQNARI 500



 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 10  ILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDN 64
           ILK   +P    Y  ++ +KPLD E      L + A +    +   +V + I  LD NDN
Sbjct: 192 ILKQHANPDGSKYAEMVLQKPLDRERHPHLTLKLIAVDGGTPQRSGTVNIDITVLDANDN 251

Query: 65  TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P F Q  Y   + E   IG+ V+T       + A D DS    L+
Sbjct: 252 APVFNQSVYKASIMENTKIGSNVVT-------VNATDADSGIYGLI 290


>gi|116283803|gb|AAH30897.1| Pcdha6 protein [Mus musculus]
          Length = 926

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD EAT  Y + VTA +      +A  SV V + D NDN P F Q  YT +
Sbjct: 404 YYSLVLDSALDREATADYKVMVTARDGGSPSLRATASVSVEVADVNDNAPVFAQPEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P GA + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGAHIFT-------VSAMDADAQENALV 490



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
           K  + P  G + TK  LDYE    Y + V A++  G  A+   C + V ++D NDNTP  
Sbjct: 292 KFQIDPNSGEVRTKGELDYEERTSYEIQVIASD-KGTPAMSGHCKISVKLVDINDNTPEV 350

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + +  V E AP+GA++        +I   D+DS  N 
Sbjct: 351 SITSLSLPVQENAPLGAVI-------ALISVSDRDSGVNG 383



 Score = 40.4 bits (93), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
           ++H   G +   +PLD+E   +    VTA + AG  A+ S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVFALQPLDHEELELLQFQVTARD-AGVPALGSNVTLQVFVLDENDNAPLLLP 567

Query: 69  -TQLNYTGYVSEAAP--IGA-LVLTNTSLPLVIRAEDKDSETNALL 110
              +   G VSE  P  +G+  V+T       +RA D DS  NA L
Sbjct: 568 QGAVGVGGSVSELVPRSVGSGHVVTK------VRAVDADSGYNAWL 607


>gi|149017335|gb|EDL76386.1| rCG49295, isoform CRA_v [Rattus norvegicus]
          Length = 862

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 11/96 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T++ LD+E T+ Y++ V A +  G  A C+V ++I D NDN P  T  +    + E
Sbjct: 295 GEITTQRTLDFEETKEYSIVVEARDGGGLVAQCTVEINIQDENDNKPEITVHSLLETIPE 354

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDS----ETNALLD 111
            AP G L+        +I+  D+DS    E N  LD
Sbjct: 355 NAPPGTLI-------SLIKIHDRDSGENGEVNCRLD 383



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
           L+T + LD E T  YN+S+ AT+  G K   S    V +H+ D NDN P F Q +Y  Y+
Sbjct: 400 LVTDRTLDRELTPEYNVSIMATD--GGKPPLSSSTKVTLHVGDVNDNAPLFHQASYLVYI 457

Query: 78  SEAAPIGALV 87
           +E  P GA +
Sbjct: 458 AENNPPGASI 467



 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    Y L +TA +       +   + + + D NDN P F Q  Y   
Sbjct: 191 YPELVLEKTLDREQQSYYRLVLTALDGGDPPLSSTTELRIQVTDANDNPPVFDQEVYRVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  V         + A DKD   N+
Sbjct: 251 LPENVPPGTTVAR-------VTATDKDEGVNS 275


>gi|51092277|ref|NP_932785.1| protocadherin alpha 2 precursor [Mus musculus]
 gi|13876258|gb|AAK26049.1| protocadherin alpha 2 [Mus musculus]
 gi|162318310|gb|AAI56387.1| Protocadherin alpha 2 [synthetic construct]
 gi|225000988|gb|AAI72669.1| Protocadherin alpha 2 [synthetic construct]
          Length = 948

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD EAT  Y + VTA +      +A  SV V + D NDN P F Q  YT +
Sbjct: 404 YYSLVLDSALDREATADYKVMVTARDGGSPSLRATASVSVEVADVNDNAPVFAQPEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P GA + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGAHIFT-------VSAMDADAQENALV 490



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
           K  + P  G + TK  LDYE    Y + V A++  G  A+   C + V ++D NDNTP  
Sbjct: 292 KFQIDPNSGEVRTKGELDYEERTSYEIQVIASD-KGTPAMSGHCKISVKLVDINDNTPEV 350

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + +  V E AP+GA++        +I   D+DS  N 
Sbjct: 351 SITSLSLPVQENAPLGAVI-------ALISVSDRDSGVNG 383



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
           ++H   G +   +PLD+E   +    VTA + AG  A+ S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVFALQPLDHEELELLQFQVTARD-AGVPALGSNVTLQVFVLDENDNAPLLLP 567

Query: 69  -TQLNYTGYVSEAAP--IGA-LVLTNTSLPLVIRAEDKDSETNALL 110
              +   G VSE  P  +G+  V+T       +RA D DS  NA L
Sbjct: 568 QGAVGVGGSVSELVPRSVGSGHVVTK------VRAVDADSGYNAWL 607


>gi|62510890|sp|Q5DRD8.1|PCDBB_PANTR RecName: Full=Protocadherin beta-11; Short=PCDH-beta-11; Flags:
           Precursor
          Length = 797

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+T  YN+++T T++     K   +  V + 
Sbjct: 384 SIPEDLPFVLKSSVEN-YYTLETERPLDRESTAEYNITITVTDLGIPRLKTEHNTTVLVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +VSE    A  IG+           + A D+DS TNA
Sbjct: 443 DVNDNAPTFTQTSYTLFVSENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  K LDYE   +  LS   T + G          V V ++D NDN+P F Q  Y 
Sbjct: 191 YPELVLDKALDYE--ELPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + +G+L+LT       + A D DS TN 
Sbjct: 249 VKIPENSILGSLILT-------VSAWDLDSGTNG 275



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           PLD+E    Y++ + AT+  G     +V + ++D NDN P  T  + T  + E  P    
Sbjct: 306 PLDFETIESYSIIIQATDRGGLFGKSTVRIQVIDVNDNAPEITVSSITSPIPENTP---- 361

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
                ++ +V   +D DS  N 
Sbjct: 362 ----ETVVMVFSIQDIDSGDNG 379



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560


>gi|410989767|ref|XP_004001130.1| PREDICTED: protocadherin beta-7-like, partial [Felis catus]
          Length = 447

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L  K  L+YEA + Y L++ A +  G    C+V+VH+ D NDN P     + T  ++E
Sbjct: 299 GKLYLKAELNYEAIQTYTLTIQAKDGGGLSGKCTVVVHVTDINDNPPELLMSSLTSPIAE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P         ++  V R  D+DS  NA
Sbjct: 359 NSP--------ETVVAVFRIRDRDSGNNA 379



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+    LD E     NL++TA +        + ++ IL  D NDN P F Q  Y   
Sbjct: 191 YPELVLDAVLDREKVSELNLTLTALDGGSPPRSGTALIRILVLDINDNIPEFVQSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G+LV+        + A D D+ TN 
Sbjct: 251 VPEDSPVGSLVVA-------VSARDLDTGTNG 275



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDN 64
           +LKP++   Y  L+T++PLD E+   YN+++T T++     K   ++ V + D NDN
Sbjct: 392 VLKPSVQNFY-TLVTERPLDRESQAEYNITITVTDLGTPRLKTQHNITVTVSDVNDN 447


>gi|262263234|tpg|DAA06611.1| TPA_inf: protocadherin gamma b9 isoform [Anolis carolinensis]
          Length = 940

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT  PLD E T  YN+++TAT+          ++ + I D NDN P F + +YT YV E
Sbjct: 406 LLTDGPLDREITPEYNITITATDKGTPPLSTEKTIFLKISDINDNAPAFEKSSYTAYVPE 465

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P GA +          RA D D E NA +
Sbjct: 466 NNPSGASIFQ-------ARASDPDLERNAQI 489



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E T  Y + V A +  G+ A C V + +LD NDN P     + +  + E
Sbjct: 301 GKITVKEPLDFEETEKYVMIVEARDGGGSAAQCKVEIKLLDENDNAPEIILASLSSPIPE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + +G L+        +I  +D+DS  N 
Sbjct: 361 DSVLGTLI-------ALINIKDRDSGDNG 382



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+ +K LD+E+   ++L + A +  G K        + ++++D NDN P FTQ  Y 
Sbjct: 193 YAELVLEKQLDHESESTFHLILMAVD--GGKPPRTGTAKIWINVIDANDNPPVFTQKIYM 250

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             + E  P G+LV+        ++A D+D+
Sbjct: 251 VTLKENVPSGSLVVQ-------VKATDRDT 273


>gi|410948363|ref|XP_003980910.1| PREDICTED: protocadherin gamma-C5 [Felis catus]
          Length = 944

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD E T  Y + + A++ AG+    A  ++ ++I D NDN PYF+Q  YT Y+ 
Sbjct: 406 LLTSQPLDRETTSHYVIELLASD-AGSPPLHAHLTIRLNISDVNDNAPYFSQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNAHL 489



 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCMIQVDVEDANDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    + E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPILESTPVGTVV-------GLFNVRDRDSGRNG 383



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD EA   + L +TA +    A++  ++I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDREAQARHQLVLTAVDGGIPARSGTTLISVIVLDINDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            AP+G L+L        + A D D  TN  LD
Sbjct: 254 NAPMGTLLLR-------LNATDPDEGTNGQLD 278


>gi|301608227|ref|XP_002933692.1| PREDICTED: hypothetical protein LOC100494436, partial [Xenopus
           (Silurana) tropicalis]
          Length = 4551

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 5   VQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDN 64
           +Q+F I      P  G++ T   LD+E T  Y ++V A +  G  + C V+V I+D NDN
Sbjct: 564 LQIFTI-----DPIKGIIKTIGELDFELTESYQMTVEAKDGGGLTSHCKVLVDIIDVNDN 618

Query: 65  TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P     + T  +SE +P G ++        +I+  D DS  N 
Sbjct: 619 APEIIITSVTSTISEDSPAGTVI-------ALIKIHDLDSGENG 655



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 11/99 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +H P  VL  +KPLD E    Y L +TA +          ++ V I D NDN+P F+Q 
Sbjct: 463 GIHHPELVL--EKPLDREKQSSYELILTAYDGGNPSKTGTATLRVMIQDVNDNSPAFSQD 520

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   + E AP   +VL        + A DKD  +NA++
Sbjct: 521 IYHINLEENAPKDFVVLQ-------LNAIDKDDGSNAMI 552



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 15/104 (14%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTP------ 66
            ++P  G L  ++  DYE  ++  ++    +    K  C  +V + ILD NDN+P      
Sbjct: 3099 INPQNGHLYAQRAFDYEQIQLLQITAKVEDCGVPKLSCNITVFIFILDTNDNSPVLLHPK 3158

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +  +LN    +  +A +G LV         I A D DS  NA L
Sbjct: 3159 HSVELNMGEKIQRSASLGYLVTK-------ISAVDLDSGHNAWL 3195



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            L+ +K LD E  + + L +TA +  G K     C + V +LD NDN P F + NY  ++ 
Sbjct: 2140 LILEKALDREEIKEHRLILTAYD-GGEKPRSGTCHITVIVLDINDNAPVFEKPNYKIHLP 2198

Query: 79   EAAPIG-ALVLTNTS 92
            E  P G +L+L N +
Sbjct: 2199 ENPPHGKSLILLNAT 2213



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P   L+ ++ LD E  + + L +TA +         C + V +LD NDN P F+Q +Y  
Sbjct: 3919 PIPELVLERALDREEKKEHRLILTAVDGGEPARSGSCQITVIVLDFNDNPPVFSQSSYRI 3978

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
             + E + +  L++T  +  L    E K+SE    LD  T+
Sbjct: 3979 TLLENSKLNTLLITLNATDL---DEGKNSELEYYLDDHTS 4015



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+T   LD E    Y + +TAT++     +   ++ +H+ D NDN P F Q +Y  ++ E
Sbjct: 4135 LVTDGILDREKISKYTIQLTATDLGFPALQTQTTITLHVSDINDNPPVFLQTHYEAFIKE 4194

Query: 80   AAPIGALVLTNTSLPL 95
                G+L+   ++  L
Sbjct: 4195 NNEPGSLLCAVSAFDL 4210



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+TK  +D E    YN+++TA++    +   +  + ++  D NDN P F + NY  Y
Sbjct: 676 YYKLITKANMDRETNAEYNITITASDKGLPQLSTNKTIPLIISDVNDNAPVFEKANYIIY 735

Query: 77  VSE 79
           V+E
Sbjct: 736 VAE 738



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+T   LD E    YN+   A+++         +++++I D NDN P F+Q  +  ++ E
Sbjct: 1551 LITNAALDRETMPQYNIHFIASDLGVPPMFTEKTLVLNISDVNDNKPLFSQPFFYAFIHE 1610

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
                G L+         I A D D  TNALL  S
Sbjct: 1611 NNLPGTLLCK-------IFATDIDEGTNALLKFS 1637



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            L+   G +  K+ +D+EA+  Y LS+ A +      +  C + V I D NDN P  T  +
Sbjct: 2885 LNSQTGEIYIKRLVDFEASHFYELSIRAKDKGVPELEGRCLLQVEIEDENDNPPEITLTS 2944

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  + E   +   V   T         DKDS  N 
Sbjct: 2945 VSSDIPENTALETAVAFFT-------VRDKDSGKNG 2973



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGY 76
            Y  L+T + LD E    Y + + A ++         I  +++ D NDN P F Q +Y   
Sbjct: 2993 YYSLVTDRSLDRETISQYTIQIVAMDLGTPALQTQSIFTLNVSDINDNAPIFLQTHYEAL 3052

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E    G+L+ T       + A D D   NA L
Sbjct: 3053 IKENNEPGSLLCT-------LGAFDLDDGVNAQL 3079



 Score = 34.3 bits (77), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 17/115 (14%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR 61
            S PV  F  + P      G +  ++  D+E  +I+ ++V   +     +   V + +LD 
Sbjct: 4229 SSPVSSFVYINPQ----NGNIYAQRAFDFEYIQIFQITVKVEDSGKLFSSVDVSIFVLDV 4284

Query: 62   NDNTPYF------TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            NDN P         ++  +  V ++A +G LV         + A D DS  NA L
Sbjct: 4285 NDNFPTVLYPVVSNEIIISELVPKSAAVGYLVTK-------VSAVDLDSGRNAWL 4332


>gi|410910412|ref|XP_003968684.1| PREDICTED: protocadherin-16-like [Takifugu rubripes]
          Length = 3253

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTP 66
            K +L+P  G L   KPLD E   I+NL++ A +      +  + +C   VH++D ND  P
Sbjct: 1580 KFSLNPNTGSLSIFKPLDREDQDIFNLTIIAEDHGIPQRSSTQLLC---VHVIDVNDEVP 1636

Query: 67   YFTQLNYTGYVSEAAPIGALVLT 89
            +F +  Y   +SE  P G  VLT
Sbjct: 1637 WFEETQYEAQISENRPSGTEVLT 1659



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GVL T +PLD E    Y L++TA +       ++ +V V ILD ND++P F    YT  +
Sbjct: 1794 GVLSTSRPLDREMRTGYTLTITAQDQGHPALSSIATVEVTILDINDHSPQFESSAYTADI 1853

Query: 78   SEAAPIGALVL 88
             E  PIG+ VL
Sbjct: 1854 PEDIPIGSHVL 1864



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV LT  PLDYE    Y ++V+ ++ +   +  ++ V + D NDN P FTQ  Y   VSE
Sbjct: 2294 GVSLTG-PLDYEERTWYTVTVSTSD-SKHHSEANLTVLVDDVNDNAPTFTQDVYQVTVSE 2351

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              P G+ V+T       + A D+DS  N  +
Sbjct: 2352 HLPAGSAVIT-------VTATDRDSGDNGKI 2375



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGYV 77
            G L+  + LDYEA   YNL+V  ++    +   SV++   +LD NDN P F++  Y+  +
Sbjct: 2512 GSLILVEELDYEAVASYNLTVVVSDRGIPQRSSSVLILISVLDTNDNPPAFSRAEYSVVL 2571

Query: 78   SEAAPIGALVL 88
            SE    G  +L
Sbjct: 2572 SEGVAAGTEIL 2582



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTP----YF 68
           + P  GV+   KPLD+E  R++ L V A + A    V +  V +H+ D NDN P     F
Sbjct: 304 VDPQSGVITLNKPLDFEMRRVHELVVQAQDNATQPEVSNAFVTIHVRDYNDNQPTMTIIF 363

Query: 69  TQLNYTGYVSEAAPIGALV 87
              + +  VSE A  G  V
Sbjct: 364 LSEDGSPRVSEGAQPGQYV 382



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 12/100 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  GV+ T K LD E    Y ++V A +  +    A  +V + +LD NDN P F +L 
Sbjct: 1685 INPVTGVITTTKSLDRELQEYYTVTVYAKDGGLPPNYAKATVRIRVLDENDNAPVFGRLY 1744

Query: 73   YTGYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNALLD 111
            Y   V E            ++PL  +RA D+D+  +A+++
Sbjct: 1745 YNIEVPENL---------DAMPLFTLRANDQDTGESAIIN 1775



 Score = 41.2 bits (95), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G L  K  LD E   +Y L+V AT   G        +V + + D NDN+P FTQ      
Sbjct: 1056 GWLFVKSTLDREVKDMYLLTVLATQGHGQLKKTGSATVRISVTDENDNSPRFTQDRVFMA 1115

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E  P G+           + A D+DS  N  L
Sbjct: 1116 VKENMPAGSGFGH-------VSATDRDSGPNGRL 1142



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 33/68 (48%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L  ++ L  E+   + L V AT+  G  A+  V + + D NDN P+F     T  + E
Sbjct: 2617 GALRLQRALGRESQSTHVLIVQATDGQGQYALAPVSIEVKDINDNRPFFPLKLLTASIRE 2676

Query: 80   AAPIGALV 87
              P  ALV
Sbjct: 2677 NKPQNALV 2684



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           ++   + LD E    Y L V AT+      +A  S I+ + D NDN P F Q  Y   + 
Sbjct: 420 LICVDRILDREERDTYELRVMATDSGTPPLRAESSFIIQVTDVNDNPPLFDQPVYRQVIP 479

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E    G+ VL        + A DKD   N 
Sbjct: 480 EVVFPGSFVLQ-------VTARDKDHGPNG 502



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           + P  G L T  PLD+EA    +L V A +    A     V + I D NDN P F+   Y
Sbjct: 837 VDPDTGALRTSLPLDHEAQSSLDLEVQARSGNPPAFGQTRVHISITDINDNPPVFSPSPY 896

Query: 74  TG-YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               + E   +G +V         ++AED+DS  N  L
Sbjct: 897 ESLLLPEHTEMGTVVYR-------VQAEDQDSGANGQL 927



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 50   AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
            ++ +V VH+ D NDN P F QL Y   +SE    G+ +LT
Sbjct: 2427 SIATVHVHVTDVNDNAPIFHQLEYRASLSEDDVPGSAILT 2466



 Score = 35.0 bits (79), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G +   +PLDYE    Y L +   +++ A    +++   + + D ND+ P F++   T  
Sbjct: 1372 GDVFLARPLDYEQHSHYTLQIEVDDLSQATPSSTLVHLDIDVEDSNDHAPQFSEDPITIV 1431

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNALL 110
            +SE+    + V T        +A DKD SE N+ L
Sbjct: 1432 ISESTEPDSSVYT-------FQAVDKDGSEPNSQL 1459



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            L+YE+T  Y+L V A +    +  A   ++VH+   ND+ P F  L Y   + E  PI  
Sbjct: 956  LNYESTPRYDLQVIAKDSGVPQLSATFVLVVHVQAENDHGPVFDTLTYRVELKEGTPINK 1015

Query: 86   LVL 88
              L
Sbjct: 1016 RFL 1018



 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 36  YNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           ++ +VTA +  G  +V  V V ++D NDN P F  +NY   +S  +  G  V+       
Sbjct: 651 FDFTVTAVDGGGLSSVAYVKVDVVDINDNRPTFYPVNYAVSLSTQSAPGTSVVR------ 704

Query: 96  VIRAEDKDSETNALL 110
            + A D DS  N  +
Sbjct: 705 -VMAYDPDSGENGRI 718


>gi|297295322|ref|XP_001088899.2| PREDICTED: protocadherin-16-like [Macaca mulatta]
          Length = 1721

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +LT++PLD+E    Y +++ A +       C VI+ +LD NDN+P     +    + E
Sbjct: 1197 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIIEVLDENDNSPEIIITSLPDQIME 1256

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P G +V        + +  D+DS  N 
Sbjct: 1257 DSPPGVVV-------ALFKTRDRDSGENG 1278



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 13/96 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  L+T + LD E    YN++VTAT+  G     S  +H +    D NDN P F+ ++Y 
Sbjct: 405 YYRLVTHRALDREQVSSYNITVTATD--GGSPPLSTEIHFMLQVADINDNPPTFSHVSYF 462

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+ E    GA + + T+L       D DS+ NA +
Sbjct: 463 TYIPENNARGASIFSVTAL-------DPDSKENARI 491



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
           +LK  L+   G +   + LDYE T  Y + + A +     A   V++ + D NDN+P   
Sbjct: 293 LLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPEVA 352

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V+E +P+G +V        ++   D DSE N 
Sbjct: 353 ITSLFSPVTEDSPLGTVV-------ALLNVHDLDSEQNG 384



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+ +  LD E   I++L +TA++        +V+V +   D NDN P FT   Y   
Sbjct: 195 YPELVLEHALDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDTNDNAPVFTLPEYRVS 254

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P+G  +LT T       A D+D   N 
Sbjct: 255 VPENLPVGTQLLTVT-------ATDRDEGANG 279



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 1299 YYKLVTDGALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 1358

Query: 77   VSEAAPIGALV 87
            V E    GA +
Sbjct: 1359 VPENNQPGASI 1369



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 1089 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 1148

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  +L        ++A D+D   N+
Sbjct: 1149 LREDVPPGTSILR-------VKATDQDEGINS 1173


>gi|195591705|ref|XP_002085579.1| GD14851 [Drosophila simulans]
 gi|194197588|gb|EDX11164.1| GD14851 [Drosophila simulans]
          Length = 2585

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 45  MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT---NTSLPLVIRAED 101
           MA   +  ++I+HILD NDN PYF Q  Y G +SE+A IG+ VL    ++   L ++ +D
Sbjct: 1   MAAESSCQNIIIHILDANDNIPYFVQNEYVGALSESAAIGSYVLKVHDSSKDHLTLQVKD 60

Query: 102 KDSETNALLD 111
            D   N +++
Sbjct: 61  ADVGVNGMVE 70



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQL 71
            ++ P  G +   +PLD E    Y L + A +    +   SV ++I  LD NDN P F+  
Sbjct: 1636 SVDPKNGTISVSRPLDRETISHYTLEIQACDQGDPQRCNSVPININILDTNDNAPIFSSA 1695

Query: 72   NYTGYVSEAAPIGALVLT 89
            NY+  + E  P+G + LT
Sbjct: 1696 NYSVVLQENRPLGYIFLT 1713



 Score = 43.5 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L+    LDYE ++ Y L++ A +  G   + +   V + ILD NDN+P F Q  Y   
Sbjct: 1537 GDLVLNATLDYEMSKFYFLTIQAID-GGTPPLSNNAYVNISILDINDNSPKFLQNLYRIN 1595

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V+E   +G+ +L        ++A D+DS+ N L+
Sbjct: 1596 VNEDIFVGSKILD-------VKATDEDSDVNGLV 1622



 Score = 42.7 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G L   KPLD E    YNLS+ AT+     A  +V + + D NDNTPY  +  Y    +E
Sbjct: 1229 GELFIAKPLDREQLMFYNLSIIATD-GKFTAKANVEIDVKDINDNTPYCLKPRYHISTNE 1287

Query: 80   AAPIGALVL 88
            +  IG  ++
Sbjct: 1288 SISIGTTLV 1296



 Score = 42.0 bits (97), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   K LD E   ++NL+V A +    K  ++ +V V+ILD NDN P F+   Y+  +
Sbjct: 1432 GIIRLDKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPEFSMRQYSCKI 1491

Query: 78   SEAAPIGALV 87
             E A  G  V
Sbjct: 1492 LENATHGTEV 1501



 Score = 40.0 bits (92), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 12/94 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G L  K PLDYE  + +++ V   +  G+ ++ S   V + + D NDN P F + +Y   
Sbjct: 608 GNLYLKTPLDYEQIKYHHIVVNVKDH-GSPSLSSRSNVFITVKDLNDNAPCFVEPSYFTK 666

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
           +S AA  G  V    +LP   +A DKD S+T++L
Sbjct: 667 LSVAAVRGQFV----ALP---KAYDKDISDTDSL 693



 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 20/114 (17%)

Query: 3   HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTA-------TNMAGAKAVCSV 54
           +P QLF I +        GV+      D E   +Y L V A        N    +AV S+
Sbjct: 281 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSVLYDGMNSNVRRAVTSI 335

Query: 55  IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + +LD NDN P F  + Y   VS   P G +++        ++A D DS  N 
Sbjct: 336 YISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAVDLDSAENG 382



 Score = 35.0 bits (79), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD E T  Y L     +       C   +I+ + D NDNTP F+   Y   V
Sbjct: 1328 GILKVASALDRETTPKYKLVAHVQDGKDFTQECFSEIIITVNDINDNTPIFSMAQYRVSV 1387

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E A +  L+         + A DKD   N
Sbjct: 1388 PEDAQLNTLITK-------VHAMDKDFGVN 1410


>gi|195575605|ref|XP_002077668.1| GD22944 [Drosophila simulans]
 gi|194189677|gb|EDX03253.1| GD22944 [Drosophila simulans]
          Length = 3038

 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +PLD E    Y L + A++    K+    C++ + + D+NDN P F    YTG V E
Sbjct: 1921 LSARPLDREQNSRYTLQIQASDRGQPKSRQGHCNITIFVEDQNDNAPRFKLSKYTGSVQE 1980

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+G  V+        I A D D   NA L
Sbjct: 1981 DAPLGTSVVQ-------ISAVDADLGVNARL 2004



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
             + P  G +  + PLD EA   Y L+V AT+     A A   VIV +LD NDN P F + 
Sbjct: 1097 GIFPNSGWIYLRAPLDREARDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKS 1156

Query: 72   NYTGYVSEAAPIGALV 87
             Y   + E    G++V
Sbjct: 1157 KYEFRIEENLRRGSVV 1172



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 16/107 (14%)

Query: 7    LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRND 63
            LFAI   + H     L+  + LDYE+++ + L VTAT+  G  ++ +   ++V + D ND
Sbjct: 978  LFAIDARSGH-----LILSQHLDYESSQRHTLIVTATD-GGVPSLSTNLTILVDVQDVND 1031

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            N P F +  Y+  VSE+  I A ++        + A D D+  NA +
Sbjct: 1032 NPPVFEKEEYSVNVSESRSINAQIIQ-------VNASDLDTGNNARI 1071



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            G++ +    DYE  + Y++ + A++M G KA  +V V I  R++ TP FT+  Y
Sbjct: 2938 GLVTSAFVFDYEQRQRYDMELLASDMGGKKASVAVRVEIESRDEFTPQFTERTY 2991



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 18/102 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L  + PLD+EA + Y L V A + +       +   +V + +LD NDN P F   N +
Sbjct: 1566 GALSLQAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLQVLDANDNAPQFVSPNSS 1625

Query: 75   G------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G      ++S+A  IG +V         I A D+DS  N  L
Sbjct: 1626 GGKTASLFISDATRIGEVVAH-------IVAVDEDSGDNGRL 1660



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G++ T+  +D E   +  L+V A +  +    +  +V+V I D NDN P F Q  
Sbjct: 556 IDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSF 615

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Y   V+E  P+G  +L        + A D D   NA+++
Sbjct: 616 YNVSVAENEPVGRCILK-------VSASDPDCGVNAMVN 647



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT--Q 70
            +HP  G + T++PLD E   +Y+L V A +       A   V +H+ D NDN P     Q
Sbjct: 1201 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1260

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V E  P G  V+        +RA D+D   NA
Sbjct: 1261 EDVVS-VREEQPPGTEVVR-------VRAVDRDHGQNA 1290



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 27  PLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           PLD E    Y LSV AT+       A  S+ + I D NDN+P F Q  Y   V E A  G
Sbjct: 461 PLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNSPEFEQDLYHANVMEVADPG 520

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + A D+D   N+ L
Sbjct: 521 TSVLQ-------VLAHDRDEGLNSAL 539



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT 69
            ++ P  GV+ T+  LD+E   IY L V A++      + V  + V +LD NDN P FT
Sbjct: 1309 SIDPTSGVIRTRVVLDHEERSIYRLGVAASDGGSPPRETVRMLRVEVLDLNDNRPTFT 1366



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            GVL     LDY++  + Y L + A +    + +CS+    + + D NDN P F    Y  
Sbjct: 2827 GVLFVNNRLDYDSGAKSYELIIQACDSHHQRPLCSLQPFRLELHDENDNEPKFPLSEYVH 2886

Query: 76   YVSEAAPIGALVL 88
            +++E  P+G+ V 
Sbjct: 2887 FLAENEPVGSSVF 2899



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E T  Y+L + A +      +   +V + I D NDN P F Q  Y   V E A +G 
Sbjct: 244 LDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGT 303

Query: 86  LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            VL        + A D D++ N L++ + N
Sbjct: 304 SVLQ-------VYASDTDADENGLVEYAIN 326



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 17/103 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP------- 66
            AL    G ++ K+ LDYE  + Y L V A++ A  +A   + V + D NDN P       
Sbjct: 2496 ALDRYSGKVVLKRRLDYELQQEYELDVIASD-AAHEARTVLTVRVNDENDNAPVFLAQQP 2554

Query: 67   --YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
              YF  L     +SE+  +   +LT       + A D DSE N
Sbjct: 2555 PAYFAILPAISEISESLSVDFDLLT-------VNATDADSEGN 2590



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            +++PA     G++ T   LD E   IY L + A++    +     ++ V I+D NDN P 
Sbjct: 2388 VIEPAFS---GIVRTNIVLDREIRDIYKLKIIASDEGVPQMTGTATIRVQIVDVNDNQPT 2444

Query: 68   FTQLNYTGYVSEAAPIGALVLT 89
            F   N    VSEA  +GA++ +
Sbjct: 2445 FPPNNLV-TVSEATELGAVITS 2465



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L+  + LD E    + L +     TATN   + A+ +V + + D NDN P + Q    
Sbjct: 1452 GNLVVARLLDREVQSEFRLEIRALDTTATNNPQSSAI-TVKIEVADVNDNAPEWPQDPID 1510

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSEA P+G ++   T       A D D+ TN  L
Sbjct: 1511 LQVSEATPVGTIIHNFT-------ATDADTGTNGDL 1539



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQ 70
            A+    G++ T   LD E    YN  V AT+    +   A   V +++LD NDN P F +
Sbjct: 2017 AIDSQSGLITTVGKLDRELQASYNFMVLATDGGRYEVRSATVPVQINVLDINDNRPVFER 2076

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              Y G V       AL+    +L L ++A D D   NA
Sbjct: 2077 YPYIGQVP------ALIQPGQTL-LKVQALDADLGANA 2107



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 14/92 (15%)

Query: 6    QLFAILKPALHPPYGVLLTK-----KPLDYEATRIYNLSVTATNMAG--------AKAVC 52
            Q  AI+       + +L +K     KPLD E   +Y L +  +   G        + +  
Sbjct: 2694 QSLAIVAGNEESAFELLQSKAIVLVKPLDRERNDLYKLRLVLSQPHGPPLISSLNSSSGI 2753

Query: 53   SVIVHILDRNDNTPYFTQ-LNYTGYVSEAAPI 83
            SVI+ ILD NDN P F +   Y   +SE AP+
Sbjct: 2754 SVIITILDANDNFPIFDRSAKYEAEISELAPL 2785


>gi|340375320|ref|XP_003386184.1| PREDICTED: hypothetical protein LOC100636493 [Amphimedon
            queenslandica]
          Length = 7134

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            +HP  GV++   PLD E T  +N +VTAT+  +    A+ +V V I+D ND+ P F  +N
Sbjct: 2604 VHPLTGVIMNLSPLDREETTHHNFTVTATDNGVPPNVAMATVTVEIIDVNDSPPQFDFVN 2663

Query: 73   YTGYVSEAA 81
            YTG +SE A
Sbjct: 2664 YTGSISENA 2672



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 9/100 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G + T    DYE+   Y  +V+  +       A   V + I+D NDN P FTQ 
Sbjct: 1302 SINPNTGWINTSVIFDYESVNQYTFTVSVIDSGSPPRDATSRVTISIIDYNDNQPMFTQS 1361

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+  + E  PIG+ +L        + A D DS  NA+++
Sbjct: 1362 VYSLSLFENIPIGSNLLQ-------VAATDDDSGDNAMIE 1394



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            + P  G++     LD+     Y+LS+ AT+      + SV+V+I  +D N++ P F Q  
Sbjct: 3991 ISPLTGLITVASGLDFNTQSFYSLSILATDQGRPPKISSVLVNISIIDNNNHNPEFNQSL 4050

Query: 73   YTGYVSEAAPIGALVL 88
            YT  ++E   +G+ V+
Sbjct: 4051 YTASITEGLALGSAVI 4066



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 8    FAILKPA---LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRN 62
            F+IL  +   +    GV+   + LDYE T+ Y+ SV  ++       +   V+++I D N
Sbjct: 3244 FSILNESDFTVDSSSGVISVARQLDYETTQDYSFSVLVSDHGNPSLSSTAQVVINITDIN 3303

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            DN PYF Q  Y   V E++ + + V T          +D D+ TN  L
Sbjct: 3304 DNPPYFEQDVYYISVPESSILYSSVFT-------APGQDPDNGTNGEL 3344



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ-LN 72
           +++P  G +     LD ++   YNL++ AT+  G      ++V ILD NDN P  T   N
Sbjct: 211 SINPDTGWISVSANLDVDSVDFYNLTLLATDGGGLNDTAVLLVTILDSNDNPPVITYPAN 270

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +   +SE  P G +++        I A D D   NA
Sbjct: 271 FNVTLSEDTPPGLILID------YINATDDDYGLNA 300



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G L+    +DYE    Y L++ + +++ G K    + + I+D NDN PYF+   Y   +S
Sbjct: 3679 GSLVLIGNVDYERLSRYVLNIESESVSTGNKVYVILTLSIIDVNDNPPYFSSDQYQLLIS 3738

Query: 79   EAAPIGALVLT 89
            E+ PIG  ++T
Sbjct: 3739 ESTPIGTDLIT 3749



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L+    LD EA     L+++A +  +       +V VH+LD NDN P F+   Y   +
Sbjct: 322 GSLVLTSELDREAGNPLALTISAIDRGLPPLSDTITVTVHLLDVNDNPPLFSTSLYQLDI 381

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE++P G LV T       I A D DS  N 
Sbjct: 382 SESSPTGQLVGT-------IAAVDPDSGENG 405



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +  +V V IL+ NDN P FTQ +Y   +
Sbjct: 2945 GLITTSGPLDSETIDQYTLTVVAMDTGEPPLFSTVNVSVLILNTNDNRPIFTQSSYHFNI 3004

Query: 78   SEAAPIGALV 87
             E  P G+ +
Sbjct: 3005 LENQPNGSTI 3014



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-----CSVIVHILDRNDNTPYFT 69
            + P  G L   + +DYE    Y+L + AT+ +G  ++      +V + ++D NDN P F 
Sbjct: 2249 IDPNTGSLTLIRDIDYEYINYYSLVIGATD-SGHISIRLTNETTVSISVIDVNDNPPIFD 2307

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  Y   +SEAA +       T L  V+ A D DS +N+ L
Sbjct: 2308 QDQYIANISEAADL------ETELIEVV-AFDYDSGSNSEL 2341



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   +D E   ++NL+V+A++ +    + S  +++ +LD N+  PYF Q NY+  V
Sbjct: 2149 GEIFTNADIDREDIDLFNLTVSASDNSVNPLIGSATLLIRVLDINEAPPYFDQDNYSLSV 2208

Query: 78   SEAAPIGALVL 88
            SE   +  +++
Sbjct: 2209 SEDQALDQVLI 2219



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 15   LHPPYGVLLTKKPLDYEA-TRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            L+   G ++    +DYE   R Y + V A++          ++I+ I D NDN P FT  
Sbjct: 1511 LNESTGEIILSSYVDYEGPLRFYYMIVNASDNGNPPLYNFTTLILQITDVNDNPPSFTAD 1570

Query: 72   NYTGYVSEAAPIGALVLT 89
            NY   VS  API  L++T
Sbjct: 1571 NYILSVSNTAPIDTLLMT 1588



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNM----AGAKAVCSVIVHILDRNDNTPYFTQ 70
            L+   G +  +   D E    + L++ A +     AG  +   V V + D NDNTPYF  
Sbjct: 988  LNSSTGDISVQDHFDREIESEFELTIMAVDAGLVPAGLSSTAVVTVLVQDLNDNTPYFIN 1047

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +Y+  V E +P+      +T L  V   +D  +E N  L
Sbjct: 1048 SSYSFEVLENSPM------DTELGQVFANDDDATEPNNQL 1081



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            G++L    LD EA   Y L++   +       + ++ +VI++  D NDN P F    Y G
Sbjct: 2369 GLILLAMTLDREAQSNYTLTLRVRDDGSPSLSSTSILTVIIN--DYNDNPPIFNADLYQG 2426

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             VSE +P+   +LT       + A D D + NA
Sbjct: 2427 SVSENSPLNTPILT-------VSAVDSDIDINA 2452



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 26   KPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRNDNTPYFTQLNYTGYVSEAAP 82
            +PLD E    ++L +  +N    + + S+    + +LD NDN P F+QL Y+  +  +  
Sbjct: 3788 RPLDRERESSHSLIINVSNPNADQVLYSIGLISITVLDTNDNNPLFSQLYYSIEIPSSTS 3847

Query: 83   IGALVL 88
            IG+ +L
Sbjct: 3848 IGSEIL 3853



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            L+   G + T    + E   +Y+L V AT+    +  +  +V + I D ND+ P F+Q  
Sbjct: 1201 LNSSTGQITTLATFNREERDLYDLVVMATDSGDPQLSSTATVFIEISDSNDHDPVFSQNQ 1260

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   +SE+  I   V+        + A D D   NA L
Sbjct: 1261 YNADISESVLISTPVIQ-------VMASDDDIGINADL 1291



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)

Query: 36   YNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            Y+LSV AT+ AG  A+  V V++ DR++    F  + Y   VSE + I +L         
Sbjct: 3592 YSLSVKATDPAGTTAIIMVHVNVHDRDNTESLFESVTYHFTVSEDSNINSL--------- 3642

Query: 96   VIRAEDKDSETNALL 110
             I + + DS T++LL
Sbjct: 3643 -IGSVNTDSNTDSLL 3656



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 11/99 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQL 71
           + P  G L   K L+      YNL++   +     ++    SV+V ++D NDN P F + 
Sbjct: 870 IDPVTGTLSVAKVLNRTIQEEYNLTIIVMDQGQPVSLYGFGSVLVSVIDSNDNAPVFNEP 929

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T +  E +P+G +          + A D D  TN+ L
Sbjct: 930 -LTAFFPENSPVGLIFYR-------VNATDYDEGTNSFL 960



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G + T   LD E    Y L V A +      + + C V + I D ND +P F Q  YTG 
Sbjct: 2506 GGIFTAGSLDREFIDQYVLLVYAYDGGSPILSSSSC-VFITITDTNDQSPVFNQSLYTGQ 2564

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E    GA++L        + A D D   N+
Sbjct: 2565 LVENTATGAVILR-------VEASDDDIGANS 2589



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 54   VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +I++ILD NDN P FTQ  Y+  +SE   + + V       L++ A D D   N 
Sbjct: 3193 LIINILDVNDNEPLFTQSLYSAVISEDITVNSTV-------LILSATDADISANG 3240



 Score = 34.3 bits (77), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYV 77
            + ++   LDYE    Y L   A++  G   + S   +++ I+D NDN P + +  Y   +
Sbjct: 1931 ISISGDGLDYERQGAYQLRAIASD-GGIPQLYSTALIVIVIIDENDNEPIWDKETYLLSI 1989

Query: 78   SEAAPIGALVLT 89
            SE   IG+ +LT
Sbjct: 1990 SENTTIGSDLLT 2001


>gi|432099154|gb|ELK28527.1| Protocadherin-15 [Myotis davidii]
          Length = 1597

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 131 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 190

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +  + +L  PL I   DKD E
Sbjct: 191 YQGYILESAPVGSTISDSVNLTTPLRIVVLDKDIE 225



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E    Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 258 QPVDREEQDTYIFSMTAFDGVQESQPVVVNIRVMDANDNTPTFPEISYNVYV 309



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 560 GSIYTTVKLNREVRDYYELLVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 619

Query: 78  SEAAPIGALVL 88
            E  P G + L
Sbjct: 620 EENLPAGTIFL 630


>gi|334311067|ref|XP_003339575.1| PREDICTED: protocadherin alpha-8 [Monodelphis domestica]
          Length = 841

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+ +  +D E+  +Y L VTA +  G+ A+    SV+V I D NDN P F Q +YT 
Sbjct: 404 YYSLVLEGSVDRESMSVYELVVTARD-GGSPALWTSASVMVGIADVNDNAPAFEQTSYTL 462

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V E  P G+ + T       + A D D+E NAL+
Sbjct: 463 FVKENNPPGSHIFT-------VSASDPDAEENALV 490



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFT 69
           K  ++P  G +  ++ LD+E    Y   V AT+      V  C++ V + D NDN P  +
Sbjct: 292 KFQINPDTGEISIQRYLDFEDINSYKFRVDATDKGNPPMVGHCTIRVDVEDTNDNAPELS 351

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +  V E AP G ++        +I   D+DS  N L+
Sbjct: 352 VTSLSLPVREDAPPGTVI-------ALISVSDRDSGANGLV 385



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E    ++L +T T+  G K        +++ +LD NDN P F +  Y   +
Sbjct: 194 LVLRKPLDREEVPEHHLILTVTD--GGKPELTGTVQLLITVLDVNDNAPTFERSEYEVKI 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E A  G LV+        + A D D   N 
Sbjct: 252 LENAARGTLVIQ-------LNASDADEGING 275



 Score = 34.7 bits (78), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 16/105 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + +G  ++ S +   V +LD NDN P    
Sbjct: 509 SVHLESGKVYALQPLDHEEIELLQFQVSARD-SGVPSLSSNVSLQVFVLDENDNPPVVLP 567

Query: 71  LN-----YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +      T  VS++  +G +V         IRA D DS  NA L
Sbjct: 568 PHSGVSPVTELVSQSVAVGHVVAK-------IRAVDADSGYNAWL 605


>gi|149726258|ref|XP_001504128.1| PREDICTED: protocadherin beta-7 [Equus caballus]
          Length = 795

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L  K  L+YEA + Y L++ A +  G    C+V+VH+ D NDN P     + T  ++E
Sbjct: 299 GGLHLKAELNYEAMQTYTLTIQAKDGGGLSGKCTVVVHVTDINDNPPELIMSSLTSPIAE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P         ++  V R  D+DS  NA
Sbjct: 359 NSP--------ETVVAVFRIRDRDSGNNA 379



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 18/107 (16%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T+ PLD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 392 VLKPSVENFY-TLVTESPLDRESQAEYNITITVTDMGSPRLKTQHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           FTQ +YT +V E    A  IG+           + A D+D+  NA L
Sbjct: 451 FTQTSYTLWVRENNSPALHIGS-----------VSATDRDAGANAQL 486



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E     +L++TA +        + +V IL  D NDN P F Q  Y   
Sbjct: 191 YPELVLDRVLDREEVPELSLTLTALDGGSPPRSGTALVRILVLDINDNVPEFVQSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G+LV       + + A D D+ +N 
Sbjct: 251 VPENSPVGSLV-------VAVSARDLDTGSNG 275



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 511 GHLFALRSLDYEALQAFEFGVGATDR-GSPALSSQARVRVLVLDANDNSPFVLYPLQNGS 569

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 570 APCTELVPRAAEAGYLVTK-------VVAVDGDSGQNAWL 602


>gi|405953973|gb|EKC21529.1| Protocadherin Fat 4 [Crassostrea gigas]
          Length = 4768

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPYFTQLN 72
            L P  G +   K +DYE   +++L++ A++        SV+V+  + D NDN P F   +
Sbjct: 1712 LDPQMGTIRLIKNVDYEQNHLFSLTILASDKGSPSQSTSVLVYLNVKDVNDNEPQFNHQS 1771

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y G V E A +G +VLT       ++A D DS  N  L
Sbjct: 1772 YAGQVLENAAVGTVVLT-------VQATDIDSGINGQL 1802



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 46/96 (47%), Gaps = 11/96 (11%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYT 74
            P G L   K LD E   +Y L+V A +  GA A  S   V +HILD NDN P F    Y+
Sbjct: 1044 PNGKLYIAKQLDRETRDLYKLTVMAQDH-GAPARSSEVNVTIHILDSNDNRPRFLNQTYS 1102

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YVSE  P G  +         ++A D D   NA L
Sbjct: 1103 FYVSENVPPGQKI-------GAVKAVDADIGRNAEL 1131



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 10/95 (10%)

Query: 20   GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGY 76
            GV+   K LDY++ T IY L+V+A + A      +VI  V + D NDN P FTQ ++ G+
Sbjct: 2986 GVISVAKALDYDSPTNIYLLNVSARDSALHYKEATVILTVQLTDVNDNPPLFTQSHFEGF 3045

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            V E +P      ++TS+ + ++A D D+  NA ++
Sbjct: 3046 VPENSP------SDTSI-IKVQARDIDTGDNARIE 3073



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSEAAP 82
            +  LD E    +++ V A +     A  S  V I  LD NDN+PYFT  + TGY+ E  P
Sbjct: 3313 RGKLDRETNATHSILVGAVDRGTPPATGSATVRITLLDENDNSPYFTPADLTGYIKENMP 3372

Query: 83   IGALVLTNTSLPLVIRAEDKD 103
            +G  V     + LV    D+D
Sbjct: 3373 VGTRV-----MDLVTNTADQD 3388



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           +L+    LD E    YNL++ A +M         S+I+ + D N+  P F Q  Y   V 
Sbjct: 426 LLVNVNGLDRERIDQYNLTIQAVDMGSPPKTGTKSLIIIVADVNEYPPTFLQRQYVANVL 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P+G+ +         + AEDKDS  NA L
Sbjct: 486 ETLPVGSFIAN-------LVAEDKDSGINAKL 510



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 14/103 (13%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            ++ P  GVL  +K LDYE    Y L++ A +M  +   +V SV + I D ND  P F   
Sbjct: 2025 SMDPSSGVLRVQKNLDYERVNKYTLTIQAEDMGVSPRYSVASVTITIQDVNDFQPVFQNS 2084

Query: 72   NYTGYVSE----AAPIGALVLT--------NTSLPLVIRAEDK 102
             +   V E    + P+  + L+        N+ L  V+R  DK
Sbjct: 2085 PFYALVRENMASSPPVPVITLSAVDLDSAPNSQLTYVLREGDK 2127



 Score = 42.0 bits (97), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L ++K LD E T +Y+L+V A +       A  ++ V++ D NDN P F + 
Sbjct: 2239 AINTTSGILTSQKLLDREDTALYHLTVVAKDHGNLAKSAEANITVYVDDVNDNVPQFEKQ 2298

Query: 72   NYTGYVSEAAPIGALVLTNTSL 93
             Y   ++    +G  V+  T++
Sbjct: 2299 TYNKTLNNPTSLGQFVVGVTAV 2320



 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 41/91 (45%), Gaps = 8/91 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T K LD E    Y+L+VTAT   G   V  VIV +LD NDN P F        + E
Sbjct: 842 GEIRTTKSLDREHISRYDLTVTATTNDGTSEV-KVIVTVLDANDNKPEFKYEFLDVELQE 900

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +G  V           A D DS  N LL
Sbjct: 901 NSAVGHEV-------YYAFAVDDDSGQNGLL 924



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 19/97 (19%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYF---TQL 71
            G + T + LD E   +Y+L V AT+ A            VI+ ILD NDN+P F   +Q+
Sbjct: 1822 GTIYTLQNLDRETRSVYSLVVIATDQAEPSSSQKSTTTEVIITILDVNDNSPEFVTPSQI 1881

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                +V E + +G++V T       + A D D   NA
Sbjct: 1882 ----WVKENSSVGSIVYT-------VSAVDIDEGVNA 1907



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +     ++YE T  ++L V AT        A   V+++I+D NDNTP F +  Y   +
Sbjct: 2452 GTIRVAGEVNYEMTPDFHLWVQATEGDNLLLSAYKEVVINIVDENDNTPRFQEGVYITSI 2511

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  P+ + V T       + A D DS  N 
Sbjct: 2512 RENVPVSSKVYT-------VNATDADSGDNG 2535



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            AL+   G L   + LD E      L + +++     AV +V V+I D NDN P FT + Y
Sbjct: 1609 ALNSQTGALTIARRLDREVRSTDRLIIESSDGTNT-AVATVKVNITDINDNAPVFTNVFY 1667

Query: 74   TGYVSEAAPIGALV 87
            +  V E  PIG  +
Sbjct: 1668 SFDVPEDTPIGTTI 1681



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G +     LD E   +Y+L + A +   +    A   VI+ +LD NDNTP F   
Sbjct: 1255 INPGTGQISLNGNLDTETQDLYSLQIQAADNGKSTTFTASAMVIISVLDVNDNTPLFHLT 1314

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y   + E A +G  ++        + A+D D   NA ++
Sbjct: 1315 VYEVNIREDAKLGEKLIQ-------VTADDTDLGINAEIE 1347



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFT 69
            G L   K +DYE  ++Y+L V AT+    +  +   + V I+D NDN+P FT
Sbjct: 1364 GNLYLAKLVDYETRKVYSLKVIATDKGDPRLSSEADLNVRIIDVNDNSPEFT 1415



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y L++ A +         ++V I   D NDN P F+   YT  V+E++P+  
Sbjct: 206 LDREEKDSYELTIRAADQGEYPLTGELVVQIQVSDANDNPPIFSLSQYTSTVNESSPVDT 265

Query: 86  LVL 88
           LV+
Sbjct: 266 LVI 268



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 49   KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            K++  V++ I+D ND  P F+Q ++   V E  P+G+ +L
Sbjct: 1543 KSIVEVVISIIDDNDTPPQFSQTSFVKNVGEDLPVGSEIL 1582



 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ TK  LD E    YNL + A +M         +V V ++D NDN+P F+ + 
Sbjct: 2555 VDPVTGVIQTKVALDRETQDFYNLIIEAHDMGLIRRTGTTTVRVTLIDVNDNSPTFSTI- 2613

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++  + E  P+ + ++  TS        DKD   NA
Sbjct: 2614 FSVTIPEDLPVNSFIIQVTST-------DKDIGINA 2642



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 9/85 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYN-------LSVTATNMAG-AKAVCSVI-VHILDRNDN 64
            A+    GV+ +K+ L Y   + Y+       L V AT++   AK+  ++I + I+D ND+
Sbjct: 2761 AIDDTTGVITSKETLTYIYHKSYSNALNQRELVVIATDLGTPAKSSEAIITIEIIDANDH 2820

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLT 89
             P F Q  Y   V E+AP G  +LT
Sbjct: 2821 APVFDQDLYFSAVPESAPQGERILT 2845



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 7    LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDN 64
            LF I K       G L+TK  LDYE    Y++ V A N      +    V VH+   N+ 
Sbjct: 3088 LFKINKDT-----GTLMTKGILDYENQIKYSMVVIARNPNNVNMRNTVKVTVHVTSVNEY 3142

Query: 65   TPYFTQLNYTGYVSEAAPIGALV 87
             P F Q  Y     E+A  G+++
Sbjct: 3143 YPEFVQKTYAFSTKESAANGSVI 3165



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHIL 59
            SHPV  F+I      P  G +     L+ E  + Y L V AT+  +    +   +++ + 
Sbjct: 1915 SHPV--FSI-----SPSTGQISLSSQLNRELIQNYTLQVIATDQGLESRFSTQKLVIMVE 1967

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D NDN P F    Y+  V E   IG  +L        + A D DS  N ++
Sbjct: 1968 DVNDNPPVFVPSVYSKTVREDVKIGTTLLQ-------VTATDSDSGLNGVV 2011


>gi|327270429|ref|XP_003219992.1| PREDICTED: protocadherin gamma-A10-like [Anolis carolinensis]
 gi|262263293|tpg|DAA06593.1| TPA_inf: protocadherin gamma a1 unspliced isoform [Anolis
           carolinensis]
          Length = 827

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++TAT+        + I+   ILD+NDN P F + +Y  +
Sbjct: 400 YYSLVTDRALDREETSDYNVTITATDKGVPPLSTTTIIPLKILDKNDNAPTFKEKSYISF 459

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +SE  P G  ++        ++A D D E NA
Sbjct: 460 ISENIPPGTSIIR-------LKATDPDWEENA 484



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G +  ++ +D+E    Y + V A +  G     ++++ + D NDN P     + T
Sbjct: 293 LDPKTGEVRLRQNMDFEECAEYEIEVQAQDGRGLSDRANILLAVTDVNDNAPEIAVTSLT 352

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             VSE +P+G  +        +++  D+DS  N ++
Sbjct: 353 NTVSENSPVGTAI-------ALLKVVDRDSGENGIV 381



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  L+ ++ +D E    ++L + A++  G     S  VHI     D NDN P F+Q  Y 
Sbjct: 190 YAELVLQESMDREEEAFHDLILIASD--GGIPAKSGTVHIKVVVEDANDNVPVFSQSVYK 247

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  PI +L++T       I A D D   N+
Sbjct: 248 MAVMENLPIDSLIIT-------INATDLDEGINS 274


>gi|402591445|gb|EJW85374.1| hypothetical protein WUBG_03715 [Wuchereria bancrofti]
          Length = 1582

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++   KPLD E    YNL+V A ++   G +A   V+V++ D +D  P+FTQL Y+  V
Sbjct: 540 GMISVHKPLDREKCAFYNLTVVAIDVIRLGVRAESYVVVNVDDISDTPPHFTQLFYSISV 599

Query: 78  SEAAPIGALVL 88
           SE+A IG  +L
Sbjct: 600 SESAVIGTQLL 610



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVT-ATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           ++HP  GV+ TK  L   +  I++  +  A N  G +    + + ++  N   PYF+   
Sbjct: 15  SVHPISGVIFTK--LVTNSASIHHTCIAIARNSLGTEDFMELKISVVSENQYAPYFSSTV 72

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y GY+ E  P+ + VL      L+++A D D   N L+
Sbjct: 73  YQGYIHENMPLNSSVLLEDGRQLLVKAIDHDKGINGLV 110



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+     LD E    Y+ SV A + AG  A   VI+ + D NDN P F Q  Y   ++E
Sbjct: 1470 GVIAAISSLDREVKDQYDFSVLAISAAGNSAEAKVIIDVGDVNDNAPVFEQDIYHLRIAE 1529

Query: 80   AAPIGALVL 88
               +G  +L
Sbjct: 1530 DEALGKELL 1538



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATR--IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++    LDYE  R   + +S+ +     AKAV  V V I D NDN P F   +    +
Sbjct: 1060 GQIVVNSVLDYEKIREIRFLVSLHSQRQFNAKAVSLVTVRITDVNDNKPRFEITSERVVI 1119

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE  PIG+ +        +IRA D+D+
Sbjct: 1120 SEDLPIGSSI-------TIIRAVDEDA 1139



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           ++ P  G +   K LD+E  R++   +TA++     +   +++H+ D ND  P F    +
Sbjct: 637 SVDPQSGAVSLMKSLDFETMRLFKFKLTASDSMQLTSKTDLLLHVTDANDVAPRFVSKTF 696

Query: 74  TGYVSEAAPIGALV--LTNTSLPLVIRAEDKDSETNALLDG 112
              V    PI   +  L  +   ++   ED      +++DG
Sbjct: 697 NSVVESETPINHFITKLDASDEDIISNLEDGKRFLFSIIDG 737



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           G + T+   DYEA  ++   +  T+     A  ++ + ++D NDN P F   N
Sbjct: 853 GKVYTRNLFDYEAQSVHQFVIMVTDAGDRCAFATLTLDVIDENDNIPQFITSN 905


>gi|334311065|ref|XP_001377243.2| PREDICTED: protocadherin alpha-8-like [Monodelphis domestica]
          Length = 809

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+ +  +D E+  +Y L VTA +  G+ A+    SV+V I D NDN P F Q +YT 
Sbjct: 404 YYSLVLEGSVDRESMSVYELVVTARD-GGSPALWTSASVMVGIADVNDNAPAFEQTSYTL 462

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +V E  P G+ + T       + A D D+E NAL+
Sbjct: 463 FVKENNPPGSHIFT-------VSASDPDAEENALV 490



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFT 69
           K  ++P  G +  ++ LD+E    Y   V AT+      V  C++ V + D NDN P  +
Sbjct: 292 KFQINPDTGEISIQRYLDFEDINSYKFRVDATDKGNPPMVGHCTIRVDVEDTNDNAPELS 351

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +  V E AP G ++        +I   D+DS  N L+
Sbjct: 352 VTSLSLPVREDAPPGTVI-------ALISVSDRDSGANGLV 385



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E    ++L +T T+  G K        +++ +LD NDN P F +  Y   +
Sbjct: 194 LVLRKPLDREEVPEHHLILTVTD--GGKPELTGTVQLLITVLDVNDNAPTFERSEYEVKI 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E A  G LV+        + A D D   N 
Sbjct: 252 LENAARGTLVIQ-------LNASDADEGING 275



 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 16/105 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + +G  ++ S +   V +LD NDN P    
Sbjct: 509 SVHLESGKVYVLQPLDHEEIELLQFQVSARD-SGVPSLSSNVSLQVFVLDENDNPPVVLP 567

Query: 71  LN-----YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +      T  VS++  +G +V         IRA D DS  NA L
Sbjct: 568 PHSGVSPVTELVSQSVAVGHVVAK-------IRAVDADSGYNAWL 605


>gi|119587286|gb|EAW66882.1| hCG1642212, isoform CRA_b [Homo sapiens]
          Length = 1118

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 422 INPRSGLIVTARPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507



 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864



 Score = 34.7 bits (78), Expect = 7.3,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV-----CSVIVHILDRNDNTPYFTQLNYT 74
            G +   K LDYE  + YNL+V A +     ++       V V  ++ N +TPYF      
Sbjct: 990  GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
            G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086



 Score = 34.7 bits (78), Expect = 7.8,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LD+E++  IY   V A++       ++  +V + I + NDN+P F ++   G
Sbjct: 526 GVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQG 585

Query: 76  YVSEAAPIGA 85
            +S   P+G 
Sbjct: 586 VISYDFPVGG 595


>gi|327270389|ref|XP_003219972.1| PREDICTED: protocadherin gamma-B5-like [Anolis carolinensis]
          Length = 811

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 11/90 (12%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT  PLD E T  YN+++TAT+  G   + +   + + I D NDN P F + +YT YV 
Sbjct: 406 LLTDGPLDREITPEYNITITATD-KGTPPISTEKTIFLKISDINDNAPAFEKSSYTAYVP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P GA +          RA D D E NA
Sbjct: 465 ENNPSGASIFQ-------ARASDPDLERNA 487



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 13/97 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+ +K LD+E+   +NL + A +  G K        + ++++D NDN P FTQ  Y 
Sbjct: 193 YAELVLEKQLDHESESTFNLILMAVD--GGKPPRTGTAKIWINVIDANDNPPIFTQKIYM 250

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             + E  P G+LV+        I+A D+D+ +NA ++
Sbjct: 251 VTLKENVPSGSLVVQ-------IKATDRDAGSNAQIN 280



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E T  Y + V A +  G  A C V + +LD NDN P     + +  + E
Sbjct: 301 GKITVKEPLDFEETEKYVMIVEARDGGGLAAQCKVEIKLLDENDNAPEIILASLSSPIPE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + +G L+        +I  +D+DS  N 
Sbjct: 361 DSVLGTLI-------ALINIKDRDSGENG 382


>gi|327292226|ref|XP_003230821.1| PREDICTED: protocadherin gamma-B5-like, partial [Anolis
           carolinensis]
          Length = 686

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT  PLD E T  YN+++TAT+          ++ + I D NDN P F + +YT YV E
Sbjct: 381 LLTDGPLDREITPEYNITITATDKGTPPLSTEKTIFLKISDINDNAPAFEKSSYTAYVPE 440

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P GA +          RA D D E NA
Sbjct: 441 NNPSGASIFQ-------ARASDADLERNA 462



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E T  Y + V A +  G+ A C V + +LD NDN P     + +  + E
Sbjct: 276 GKITVKEPLDFEETEKYVMIVEARDGGGSAAQCKVEIKLLDENDNAPEIILASLSSPIPE 335

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + +G L+        +I  +D+DS  N 
Sbjct: 336 DSVLGTLI-------ALINIKDRDSGDNG 357



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+ +K LD+E+   ++L + A +  G K        + ++++D NDN P FTQ  Y 
Sbjct: 168 YAELVLEKQLDHESESTFHLILMAVD--GGKPPRTGTAKIWINVIDANDNPPVFTQKIYM 225

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             + E  P G+LV+        ++A D+D+
Sbjct: 226 VTLKENVPSGSLVVQ-------VKATDRDT 248


>gi|431892553|gb|ELK02986.1| Protocadherin gamma-A1 [Pteropus alecto]
          Length = 799

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KKPLD+E  +IY + + A + AG  A   V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKKPLDFEEYKIYPIEIQAQDGAGLMARTKVLIKVLDINDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P   ++        +I   D+DSE N 
Sbjct: 359 NFPPATII-------ALISVHDQDSEENG 380



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E T  YN++V AT+           + + + D NDN P F + +Y+ Y
Sbjct: 401 YYRLVTERTLDRELTSKYNITVIATDQGIPSLSTEVHISLQVTDVNDNPPAFPKDSYSVY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +SE  P GA + +       + A D DS  NA
Sbjct: 461 ISENNPRGASIFS-------VTAHDADSHENA 485



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
           ++ + PLD E   +++L +TA +  G   V S    + V ++D NDN P FTQ  Y   V
Sbjct: 194 MVLQSPLDREEESVHHLLLTAFD--GGNPVHSGTLRIRVQVVDVNDNPPSFTQAQYHMSV 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P+G  +       L+++A D D   N 
Sbjct: 252 PENVPLGTQL-------LIVKATDPDEGANG 275


>gi|11128027|ref|NP_061750.1| protocadherin gamma-B7 isoform 1 precursor [Homo sapiens]
 gi|37999828|sp|Q9Y5F8.1|PCDGJ_HUMAN RecName: Full=Protocadherin gamma-B7; Short=PCDH-gamma-B7; Flags:
           Precursor
 gi|5456975|gb|AAD43730.1| protocadherin gamma B7 [Homo sapiens]
 gi|30354254|gb|AAH51788.1| Protocadherin gamma subfamily B, 7 [Homo sapiens]
 gi|119582327|gb|EAW61923.1| hCG1982215, isoform CRA_b [Homo sapiens]
          Length = 929

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDQDSGENG 380



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|347543893|gb|AEP02519.1| PCDH15, partial [Myotis altarium]
          Length = 1916

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT  +
Sbjct: 333 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 392

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +  + +L  PL I   DKD E
Sbjct: 393 YQGYILESAPVGSTISDSVNLTTPLRIVVLDKDIE 427



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E    Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 460 QPVDREEQDTYIFSMTAFDGVQESQPVVVNIRVMDANDNTPTFPEISYNVYV 511



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 762 GSIYTTVKLNREVRDYYELLVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 821

Query: 78  SEAAPIGALVL 88
            E  P G + L
Sbjct: 822 EENLPAGTIFL 832



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T
Sbjct: 116 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFT 161



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+     LDYE    Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1080 GVIYVNDLLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1139

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A +   VL        ++A DKD+
Sbjct: 1140 KFYIGGVSEDARMFDSVLK-------VKATDKDT 1166


>gi|339241777|ref|XP_003376814.1| putative cadherin domain protein [Trichinella spiralis]
 gi|316974454|gb|EFV57941.1| putative cadherin domain protein [Trichinella spiralis]
          Length = 4414

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 6/76 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAV---CSVIVHILDRNDNTPYFTQLNY 73
            GVL   +PLD E    Y++ V A + A   GAK++   CSV++ +LD NDN P FT+L Y
Sbjct: 3006 GVLSVTEPLDREQQHEYSIVVLAEDCAQETGAKSLSAQCSVLLTVLDINDNAPEFTELVY 3065

Query: 74   TGYVSEAAPIGALVLT 89
               ++E A +G  V+T
Sbjct: 3066 KAEIAENARLGDRVVT 3081



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 10/97 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRNDNTPYFTQL 71
           + P  G L  ++ LD E    YNL+V A++    +A+ S+   ++HI D ND  P F +L
Sbjct: 561 IDPNTGKLTVQRSLDREQVPRYNLTVAASDGHWPQALVSLSSLLIHIGDSNDQRPVFDRL 620

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y   V E A + + +LT       +RA D+D  +N 
Sbjct: 621 LYQAEVDENAALSSPILT-------VRARDQDLGSNG 650



 Score = 47.4 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            G L  +KPLD E    Y + + A +         SV V +LD NDN P F Q  Y+  + 
Sbjct: 2053 GELSLQKPLDREQIDQYTIRLKAVDHERNVTEFASVTVVVLDINDNWPQFNQSTYSASLP 2112

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E +PIG  V+        + A D D   NALL
Sbjct: 2113 EDSPIGCPVVQ-------LHATDLDQGDNALL 2137



 Score = 45.4 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 15   LHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            +HP  G L T   PLD EA   + + V A+++  A  V   C V+V +LDRNDN P F  
Sbjct: 1833 VHPRTGALYTTGVPLDREARAQWPVVVRASSLRDAGRVLAQCLVLVDVLDRNDNVPVFVG 1892

Query: 71   LNYTGYVS-EAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
              Y   VS +   IG L+ T       +RA D D   N  ++ S
Sbjct: 1893 APYEFRVSVDRTDIGQLIGT-------VRAVDLDIGPNGRVNYS 1929



 Score = 38.1 bits (87), Expect = 0.72,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV++++ PLD E    Y L+V A + A         V V + DRNDN P   +  Y   V
Sbjct: 883 GVIVSRIPLDRETRSYYWLTVEARDRAPVSLATRVDVFVAVKDRNDNAPVPARPLYEADV 942

Query: 78  SEAAPIGALVL 88
            E +P G  ++
Sbjct: 943 VENSPPGTSIV 953



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTAT-NMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++P  G L+    LDYE    + L + A  +  G  +V  V V I+DRND+ P F    +
Sbjct: 2389 VNPDTGHLIIADQLDYEQRSRHQLVIGARLDSWGIVSVLHVQVDIVDRNDHAPRFVASKF 2448

Query: 74   TGYVSEAAPIGALVL 88
            +  VS +  +G  +L
Sbjct: 2449 SILVSASETVGTPLL 2463


>gi|449512576|ref|XP_002199124.2| PREDICTED: protocadherin gamma-C3-like, partial [Taeniopygia
           guttata]
          Length = 772

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  ++ LD+E TR Y L V A +  G  A C V + +LD NDN P  T L+ +  + E
Sbjct: 220 GTITLQEELDFEDTRGYTLLVEARDGGGLVAHCKVELEVLDVNDNAPEITVLSLSNPLPE 279

Query: 80  AAPIGALV 87
            AP+GA+V
Sbjct: 280 DAPVGAVV 287



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ ++ LD E+     L +TA +           + +++ D NDN P F Q  Y   
Sbjct: 112 FAELVLRRALDRESEPSLRLLLTALDGGDPPRTGTAQLWINVTDANDNPPVFAQDRYRVS 171

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G+ VL        I A D D+ TNA
Sbjct: 172 LREDTPPGSTVLN-------ISASDADAGTNA 196


>gi|14270508|ref|NP_115272.1| protocadherin gamma-B7 isoform 2 precursor [Homo sapiens]
 gi|5457094|gb|AAD43783.1|AF152523_1 protocadherin gamma B7 short form protein [Homo sapiens]
 gi|119582348|gb|EAW61944.1| hCG1982215, isoform CRA_w [Homo sapiens]
          Length = 808

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VIV ++D NDN+P     + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G +V        + +  D+DS  N 
Sbjct: 359 DSPPGVVV-------ALFKTRDQDSGENG 380



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  +L        ++A D+D   N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275


>gi|327270401|ref|XP_003219978.1| PREDICTED: protocadherin gamma-B4-like [Anolis carolinensis]
          Length = 931

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + TK  +D+E    Y ++V A +  G  A C+V + +LD NDN P     + +  + E
Sbjct: 301 GKITTKAAMDFEEIEKYEITVEARDAGGLAAQCNVEIKLLDENDNAPEVILASLSSPIPE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + IG LV         I  +DKDSE N 
Sbjct: 361 DSTIGTLV-------AFINIKDKDSENNG 382



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           +LT   LD E T  YN+++ AT+          ++ + I D NDN+P F +  Y  YV E
Sbjct: 406 ILTDGLLDRETTPAYNITIIATDKGTPPLSTEKTISLKISDINDNSPAFDKSYYAAYVPE 465

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G+ +         + A D D E N+ +
Sbjct: 466 NNPSGSSIFQ-------VHASDPDLERNSQI 489



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ +K LD+E+   ++L +TA +           + + ++D NDN P F+Q  Y   + E
Sbjct: 196 LVLQKQLDHESENSFHLILTAVDGGNPPKTGTAKIWIIVIDANDNPPVFSQKLYMVTLRE 255

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +   G+LV+        + A D+D+ +N  +
Sbjct: 256 SVQNGSLVVQ-------VTATDRDAGSNGQM 279


>gi|403255754|ref|XP_003920576.1| PREDICTED: protocadherin gamma-A1 [Saimiri boliviensis boliviensis]
          Length = 819

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E    YN++VTAT+  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELISGYNITVTATDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+ E  P GA + +       +RA D DS  NA +
Sbjct: 460 YIPENNPRGASIFS-------VRAHDSDSNENAQI 487



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  +IY++ V A + AG  A   V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKIYSMEVQAQDGAGLMARAKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVLDQDSGDNG 380



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           ++ + PLD E   +++L +TA++      +G   +C   + ++D NDN P FTQ  Y   
Sbjct: 194 MVLQSPLDREEEAVHHLILTASDGGDPVRSGTLQIC---IQVVDANDNPPAFTQAEYHMN 250

Query: 77  VSEAAPIG-ALVLTNTSLP 94
           V E  P+G  L++ N + P
Sbjct: 251 VPENVPVGTQLLMVNATDP 269


>gi|402872887|ref|XP_003900325.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-B7-like [Papio
            anubis]
          Length = 1804

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +LT++PLD+E    Y +++ A +       C VI+ +LD NDN+P     +    + E
Sbjct: 1173 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIIEVLDENDNSPEIIITSLPDQIME 1232

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +P G +V        + +  D+DS  N 
Sbjct: 1233 DSPPGVVV-------ALFKTRDRDSGENG 1254



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 13/96 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  L+  + LD E    YN++VTAT+  G     S  +H +    D NDN P F+ ++Y 
Sbjct: 405 YYRLVIHRALDREQVSSYNITVTATD--GGSPPLSTEIHFMLQVADINDNPPTFSHVSYF 462

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+ E    GA + + T+L       D DS+ NA +
Sbjct: 463 TYIPENNARGASIFSVTAL-------DPDSKENARI 491



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
           +LK  L+   G +   + LDYE T  Y + + A +     A   V++ + D NDN+P   
Sbjct: 293 LLKFQLNKYTGEIKISENLDYEETGFYEIEIQAEDGGAYLATAKVLITVEDVNDNSPEVA 352

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V+E +P+G +V         +   D DSE N 
Sbjct: 353 ITSLFSPVTEDSPLGTVV-------AFLNVHDLDSEQNG 384



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+ +  LD E   I++L +TA++        +V+V +   D NDN P FT   Y   
Sbjct: 195 YPELVLEHALDREEEAIHHLVLTASDGGDPLRSGTVLVSVTVFDTNDNAPVFTLPEYRVS 254

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P+G  +LT       + A D+D   N 
Sbjct: 255 VPENLPVGTQLLT-------VTATDRDEGANG 279



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+T   LD E T  YN+++ AT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 1275 YYKLVTDGALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 1334

Query: 77   VSEAAPIGALV 87
            V E    GA +
Sbjct: 1335 VPENNQPGASI 1345



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+ +K LD E    ++L +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 1065 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 1124

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P G  +L        ++A D+D   N+
Sbjct: 1125 LREDVPPGTSILR-------VKATDQDEGINS 1149


>gi|149017334|gb|EDL76385.1| rCG49295, isoform CRA_u [Rattus norvegicus]
          Length = 924

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 11/96 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T++ LD+E T+ Y++ V A +  G  A C+V ++I D NDN P  T  +    + E
Sbjct: 295 GEITTQRTLDFEETKEYSIVVEARDGGGLVAQCTVEINIQDENDNKPEITVHSLLETIPE 354

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDS----ETNALLD 111
            AP G L+        +I+  D+DS    E N  LD
Sbjct: 355 NAPPGTLI-------SLIKIHDRDSGENGEVNCRLD 383



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
           L+T + LD E T  YN+S+ AT+  G K   S    V +H+ D NDN P F Q +Y  Y+
Sbjct: 400 LVTDRTLDRELTPEYNVSIMATD--GGKPPLSSSTKVTLHVGDVNDNAPLFHQASYLVYI 457

Query: 78  SEAAPIGALV 87
           +E  P GA +
Sbjct: 458 AENNPPGASI 467



 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    Y L +TA +       +   + + + D NDN P F Q  Y   
Sbjct: 191 YPELVLEKTLDREQQSYYRLVLTALDGGDPPLSSTTELRIQVTDANDNPPVFDQEVYRVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  V         + A DKD   N+
Sbjct: 251 LPENVPPGTTVAR-------VTATDKDEGVNS 275


>gi|426229750|ref|XP_004023518.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-C5-like [Ovis
           aries]
          Length = 841

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT +PLD EAT  Y + + A +          ++ ++I D NDN PYFTQ  YT Y+ E
Sbjct: 406 LLTSQPLDREATSHYIIELLAHDEGSPPLHTHLTIRLNISDVNDNAPYFTQQLYTAYIPE 465

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G+L+ T       + A D D+  NA L
Sbjct: 466 NRPPGSLLCT-------VAASDPDTGDNARL 489



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E    + L +TA +    A++  ++I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDRETQARHQLVLTAVDGGVPARSGTTLISVTVLDINDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            AP+G L+L        + A D D  TN  LD
Sbjct: 254 NAPVGTLLLR-------LNATDPDEGTNGQLD 278


>gi|355691690|gb|EHH26875.1| hypothetical protein EGK_16954 [Macaca mulatta]
          Length = 810

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E    YN++VTAT+           + +L  D NDN+P F Q +Y+ Y
Sbjct: 401 YYRLVTERTLDRELISGYNITVTATDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA + +       +RA D DS  NA
Sbjct: 461 IPENNPRGASIFS-------VRAHDSDSNENA 485



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  +IY++ V A + AG      V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKIYSMEVQAQDGAGLMTRAKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G   V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLRSPLDREEEAVHHLILTASD--GGDPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D  +N 
Sbjct: 232 VVDANDNPPAFTQAQYHMNVPENVPLGTRL-------LMVNATDPDEGSNG 275


>gi|345784074|ref|XP_856760.2| PREDICTED: protocadherin Fat 4 isoform 2 [Canis lupus familiaris]
          Length = 4980

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++AT+         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISATDGGWVARTGYCSVTVNVIDVNDNSPVFFPD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  ++LD NDN P F+  +Y+
Sbjct: 1891 LNPVTGVFNLTRVLDYEAQQYYILTVRAEDGGGQFTTIRVYFNVLDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  I++ILD NDN P F+Q+ ++ YV
Sbjct: 2723 GEIRSIRPLDREKVSQYVLTIKSSDKGSPSQSTSVKVIINILDENDNAPRFSQI-FSAYV 2781

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
             E +P+G  V   T+        D+D + NA+
Sbjct: 2782 PENSPLGYTVTRVTT-------SDEDIDINAI 2806



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGAVPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQALDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTVASLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDVNDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 694 YFAHIQENEPGGSYITT 710



 Score = 41.2 bits (95), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   S +  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGNISLLGPLDVHAGS-YQIEILASDMGVPQLSSSFVLTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNPPVFDQLSYEVTLSESEPVNSRFFK-------VQAFDKDSGANG 1029



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAAVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  ++ + +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATINIQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNFGAPPGTAARARSSVASLVIFVNDINDHPPVFAQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L VTAT+ +G+ A+    ++ V I D NDN P F    Y   
Sbjct: 2314 GELRVIQSLDRETKAHFVLMVTATD-SGSPALTGTGTINVIIDDVNDNVPTFASKMYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 16/96 (16%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LD E    Y L+V AT+  G  A+ S   V+V +LD NDN P F Q  Y   ++E     
Sbjct: 2112 LDREEVSNYTLTVVATD-KGQPALSSSTEVVVMVLDINDNNPVFMQALYKVEINEN---- 2166

Query: 85   ALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
               LT T + + + A D D  TN      ++DG+ N
Sbjct: 2167 --TLTGTDI-IQVYAADGDEGTNGQVRYGIIDGNAN 2199



 Score = 37.7 bits (86), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2879 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 2905



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E    Y L V +++    +   +  SV+V + D NDN P F   
Sbjct: 2410 INPSTGQIITSALLDRETKENYTLVVVSSDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 2469

Query: 72   NYTGYVSEAAPIGALVL 88
             Y  ++    P G+ V 
Sbjct: 2470 PYVTHIPSPTPPGSFVF 2486



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V+I  LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYSLTVQATDRGSTPRTDTTTVNIVLLDINDFVPMFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDQGSNS 2293



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++     +   +   V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKSLDRESQSFYNLVVQVHDLPQLPASRFTSTAHVSIILLDVNDNPPAFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTIVFK-------AQATDPDSGPNSYIE 2086


>gi|8926617|gb|AAF81913.1|AF217749_1 protocadherin beta 9 [Homo sapiens]
          Length = 797

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
            LKP++   Y +L+T+  LD E+   YN+++T T+M     K   S+ + + D NDN P 
Sbjct: 392 FLKPSVDNFY-ILMTEGALDRESKAEYNITITVTDMGTPRLKTEHSITLQVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  ++ LDYE    Y +++ A +  G  A C+V++ +LD NDN P     + +
Sbjct: 294 INPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V+E +P   +VL       V + +D+DS  N 
Sbjct: 354 NSVAENSP--GIVLA------VFKIKDRDSGENG 379



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E     +L++TA +          ++ + +LD NDN P F Q  Y   
Sbjct: 191 YPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAPQFAQALYETQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E +P+G+L++        + A D DS  NA
Sbjct: 251 APENSPVGSLIVK-------VSAGDADSGVNA 275


>gi|403255758|ref|XP_003920578.1| PREDICTED: protocadherin gamma-B7 [Saimiri boliviensis boliviensis]
          Length = 832

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +LT++PLD+E    Y +++ A +       C VI+ +LD NDN+P  T  + +  + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIIEVLDENDNSPEITITSLSDQIME 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G +V        + +  D+DS  N 
Sbjct: 359 DSAPGVVV-------ALFKTRDRDSGENG 380



 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN++VTAT+        S  + +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDGALDREQTPAYNVTVTATDRGKPPLSSSKTITLHITDVNDNVPVFGQSAYLVH 460

Query: 77  VSEAAPIGALV 87
           V E    GA +
Sbjct: 461 VPENNQPGASI 471


>gi|345793728|ref|XP_544301.2| PREDICTED: protocadherin beta-6 [Canis lupus familiaris]
          Length = 796

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +H   G +  +K LD+E  + Y++ + AT+  G    CS+++ +LD NDNTP  T  ++T
Sbjct: 294 IHAITGEIRLRKTLDFEEFQSYHVDIEATDGGGLSGKCSLVIKVLDVNDNTPQLTMSSFT 353

Query: 75  GYVSEAAP 82
             + E  P
Sbjct: 354 SAIPENLP 361



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +L+P++   Y  L+T   LD E+   YN+++T +++     K   ++ V + D NDN P 
Sbjct: 392 LLRPSVENFY-TLVTNGALDRESQAEYNITITVSDLGTPRLKTQHNITVTVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           F+Q  YT  V E    A  IG            + A D+D+  NA
Sbjct: 451 FSQTTYTLRVRENNSPALHIG-----------TVSATDRDAGANA 484



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E      L++TA +        +V + IL  D NDN P F Q  Y   + E
Sbjct: 195 LVLDKALDREEQPELRLTLTALDGGSPTRSGTVEIQILVLDINDNAPEFAQELYETQIPE 254

Query: 80  AAPIGALVLT 89
            + +G+L++T
Sbjct: 255 NSTLGSLIIT 264


>gi|432878489|ref|XP_004073334.1| PREDICTED: protocadherin gamma-A11-like [Oryzias latipes]
          Length = 819

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           GV+     +DYE  + Y L + A +  G     ++I+ + D NDN P  T ++Y+  VSE
Sbjct: 308 GVISVAGDIDYEKEKKYELRLEARDRGGLTGTSTIIIDVSDVNDNAPVITIMSYSSAVSE 367

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP+   +        +I   D DSE N 
Sbjct: 368 DAPVDTTI-------AIINVRDADSEKNG 389



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYVSE 79
           L++ +  D E    Y + + A +        SVI  V I D NDN P F +  Y+ YV E
Sbjct: 413 LVSDRSFDRELIAEYKIIIIAKDSGSPPLSSSVILNVKISDINDNQPLFEKHFYSAYVME 472

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               G  + T       +RA+D D + NA
Sbjct: 473 NNSPGTSITT-------VRAKDADWKQNA 494



 Score = 34.7 bits (78), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 8   FAILKPALHP---PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRN 62
           + +LK   +P    Y  L+ ++PLD E      L V A +    +   +V +++L  D N
Sbjct: 186 YFVLKQHTNPDGSKYAELVLQRPLDREEQPSLLLKVIAADGGTPQRSGTVNINVLVLDAN 245

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLT 89
           DN P F Q  Y   ++E +  G  V T
Sbjct: 246 DNAPAFNQSVYRATITENSHKGTYVAT 272


>gi|196006169|ref|XP_002112951.1| hypothetical protein TRIADDRAFT_25152 [Trichoplax adhaerens]
 gi|190584992|gb|EDV25061.1| hypothetical protein TRIADDRAFT_25152, partial [Trichoplax
           adhaerens]
          Length = 2391

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G +  KK LDYE    Y L V  T  AG    +A+ ++ +H+LD ND++P F Q++Y   
Sbjct: 592 GRITIKKSLDYENRSSYTLFV-KTQDAGHPPRQAILTLDIHVLDENDHSPQFQQISYNFG 650

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           VS+  PIG  V         + A D D+  NA L
Sbjct: 651 VSQGQPIGTWVGH-------VDARDDDTGLNAQL 677



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A++   G++ T   LDY+ T+  +L + A++     + C+V + ILD NDN PYF   +Y
Sbjct: 181 AINSTTGMIKTVDQLDYDVTKKVDLIIQASD-GLYTSTCNVNITILDANDNPPYFRFQSY 239

Query: 74  TGYVSEAAPIGALVLT 89
           +G V E A IG  V+T
Sbjct: 240 SGNVDENAAIGTPVIT 255



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQL 71
           A+    G +   + LD E   I  L++TAT+ +  K +  ++  + ILD NDN P F Q 
Sbjct: 481 AIDSRNGNITLMQSLDRELVNIITLNITATDRSQDKFLSWMLLTIQILDNNDNAPQFKQS 540

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + +  +SEA+  G LV         ++A D D+ TN+ L
Sbjct: 541 HVSVNISEASTAGTLVYQ-------VKATDPDAGTNSQL 572



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 19/109 (17%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--------MAGAKAVCSV----IVHILDR 61
           +++   G +  ++ LDYE+   Y L++ A N         A  +   S      +H+ D 
Sbjct: 66  SINSTTGQIQVQRQLDYESRSSYGLTIGANNPGDSPTTSFATIQPTLSTSKVATIHVQDA 125

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           NDN+P F    Y+  ++E+ PIG  V+T       ++A D+D   NA +
Sbjct: 126 NDNSPVFNPNVYSTSINESVPIGTKVVT-------VKANDRDQGANAQI 167



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 11/87 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGY 76
           G + T  PLD E  + Y L+VTAT+  GA A    C+V V++ D +DN P FT+   T  
Sbjct: 805 GRITTHGPLDAEKRQYYRLNVTATD-EGATAKMDWCTVQVNVTDVDDNIPTFTKQEITIA 863

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD 103
           + E  P+   ++T       ++A D D
Sbjct: 864 IKENIPLNTTIVT-------VKATDAD 883



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 14/91 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-------VCSVIVHILDRNDNTPYFTQLN 72
           G ++  KPL+YE  + Y L V ATN     A       V  V + I++ NDN P F +  
Sbjct: 909 GKIINLKPLNYELIQRYTLLVEATNHVRGHAIKNTRPDVVEVTIQIINVNDNAPAFDRSA 968

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           Y   ++E +P+G+ V         + A DKD
Sbjct: 969 YYFGITENSPLGSKV-------NCVNASDKD 992



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++   + LDYE    Y L V AT+    KA   +IV++LD NDN P F +  Y   + E
Sbjct: 1859 GLITLARRLDYERITSYELIVQATDQI-QKAQTILIVNVLDYNDNAPVFDKPTYEATLQE 1917

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +P    V+T       + A D+DS  N+ +
Sbjct: 1918 FSPPHQPVVT-------VHATDQDSGDNSRI 1941



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 14/109 (12%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           +++P  G++ TK  LD     I+NL+V A +  +    A   VI+++ + N+  P F + 
Sbjct: 694 SINPVTGIITTKTLLDRTVQSIFNLTVIARDQGITPRNATTEVIINVGEVNNYLPVFAKH 753

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD-----SETNALLDGSTN 115
           NY   + E   IG L++        ++A DKD     S   A+LDG+ N
Sbjct: 754 NYPVSIVENVEIGTLIVQ-------VQASDKDIGKSGSIVYAILDGNPN 795



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
            K AL    GVL     LDYE  + Y L+++AT+       +   + V+++D ND+ P F 
Sbjct: 1120 KFALDVDNGVLSIASKLDYERKKQYALNISATDKGIPRRSSYMKLTVYVVDVNDHAPTFN 1179

Query: 70   QLNYTGYVSEAAPIGALV 87
            +  YT  ++E  P+   +
Sbjct: 1180 KTIYTASINENVPLNTFI 1197



 Score = 41.2 bits (95), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G L T K L+ E    Y L+V A +       +   V V + D+ND+ P F Q  
Sbjct: 1332 INPQTGELSTTKSLNRERIAQYQLTVMAKDNGSPSLNSTTKVTVIVTDQNDHDPKFNQTR 1391

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y+  ++E+  I   V T       + A D DS  N ++
Sbjct: 1392 YSASIAESVAINTTVTT-------VYATDADSGPNQII 1422



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++   + L+ +   +YNL++ A++ A  G +   +++   + ++   P F+Q  
Sbjct: 2169 IQPTTGIVTVSRILNQQDIGVYNLTILASDGAAIGTRNSTTLVTITISKSPQAPRFSQQQ 2228

Query: 73   YTGYVSEAAPIGALVLT 89
            Y G ++E + IG+ V+T
Sbjct: 2229 YFGSIAENSRIGSTVMT 2245



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 54  VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V V ++D NDN P F Q  Y G V E A IG +VL        + A D+D+  NA +
Sbjct: 3   VNVTVVDANDNRPTFNQSQYNGQVVENATIGTVVLR-------VYASDRDAGNNAKI 52



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G + T   +D+E    Y+L  +AT+ A        ++ +V++ + D+NDN P F   ++ 
Sbjct: 1020 GCIYTAAAIDHENVYKYDLIASATDQAVNISERKTSLVNVVIWVADQNDNAPRFIGTSHI 1079

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
              V+E   +G      T++  +I  +D   + N +
Sbjct: 1080 QAVNEDESVG------TTIAQIIAVDDDSRQNNNI 1108



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAK-AVCSVIVHILDRNDNTPYFTQL 71
            ++P  G + T   LD E    YN  V A++M+  G + A+ SV V + D ND  P FTQ+
Sbjct: 1438 INPVTGRIATAARLDRETIASYNFLVNASDMSPFGIRTAIVSVDVRVTDINDVIPTFTQV 1497

Query: 72   NYTGYVSEA 80
             Y   +S +
Sbjct: 1498 PYVVNISSS 1506



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T K LD E    Y L+V A + A     +   V++ +LD NDN P F+  ++T Y+
Sbjct: 1233 GRITTAKYLDREQHPQYILTVDAHDNALPSKYSSTQVVITVLDINDNPPQFSNQSHTFYI 1292

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P        T +  +I A DKD ++N+ +
Sbjct: 1293 PENFPP-------TKVDRII-AVDKDKDSNSRI 1317


>gi|149017355|gb|EDL76406.1| rCG49295, isoform CRA_ap [Rattus norvegicus]
          Length = 553

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD E T  Y + + A++ AG+  +    ++ ++I D NDN P+FTQ  YT Y+ 
Sbjct: 77  LLTSQPLDREVTSHYTIDLLASD-AGSPPLHTHLTIRLNISDVNDNAPHFTQQLYTAYIP 135

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D   NA L
Sbjct: 136 ENRPPGSLLCT-------VAASDPDEGDNARL 160


>gi|395504756|ref|XP_003756713.1| PREDICTED: protocadherin beta-16-like [Sarcophilus harrisii]
          Length = 792

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +K LD+E  + Y + +  T+  G    C+VIVH++D NDN P  T  + T
Sbjct: 294 VNPISGDIRLRKKLDFETIQRYEVDIEGTDGGGLSGKCTVIVHVIDLNDNAPELTMSSLT 353

Query: 75  GYVSEAAP 82
             + E AP
Sbjct: 354 NPIPENAP 361



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           IL+P++   Y  L+T+  LD E    YN+ +T T++     K+  ++ V I D NDN P 
Sbjct: 392 ILQPSIENFYA-LVTEGALDRENKAQYNVMITVTDLGFPRLKSEYNITVFISDVNDNPPV 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ  YT Y+ E    A  +G+           + A D+DS TNA
Sbjct: 451 FTQTEYTLYLKENNSPAFHLGS-----------VSANDRDSGTNA 484



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L +TA +           V + +LD NDN P FTQ  Y   + E
Sbjct: 194 LVLIKTLDREEQPEFTLILTAIDGGSPPRSGTTRVRIAVLDINDNAPIFTQPQYEVRIPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              IG+LV+T       I AED D+  NA
Sbjct: 254 NNSIGSLVVT-------ISAEDLDTGKNA 275


>gi|402872836|ref|XP_003900305.1| PREDICTED: protocadherin gamma-A1 [Papio anubis]
          Length = 821

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E    YN++VTAT+  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELISGYNITVTATDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+ E  P GA + +       +RA D DS  NA +
Sbjct: 460 YIPENNPRGASIFS-------VRAHDSDSNENAQI 487



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  +IY++ V A + AG      V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKIYSMEVQAQDGAGLMTRAKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G   V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLRSPLDREEEAVHHLILTASD--GGDPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D  +N 
Sbjct: 232 VVDANDNPPAFTQAQYHMNVPENVPLGTRL-------LMVNATDPDEGSNG 275


>gi|348582123|ref|XP_003476826.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4-like [Cavia
            porcellus]
          Length = 4819

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL+  K LDYE  + + +++ AT+         CSV ++++D NDN+P F   
Sbjct: 3140 AINSSTGVLVLAKALDYELCQKHEITIRATDGGWVARTGYCSVTINVIDVNDNSPVFVPD 3199

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3200 EYFPTVLENAPSGTTVIH-------LNATDVDSGTNAVI 3231



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRILDYETQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 2725 GEIRSIRPLDREKVSHYMLTIKSSDKGSPSQSTSVKVIINILDENDNAPRFSQI-FSAHV 2783

Query: 78   SEAAPIGALV 87
             E +P+G +V
Sbjct: 2784 PENSPLGYIV 2793



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      +V  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSVTHINVSLLDMNDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 694 YFAHIQENEPGGSYITT 710



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF+I     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFSI-----NEKNGNISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVYD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNPPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +      +     ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAVDRGVPSLIGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPTYSLVIQAVDSGTISLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLLVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+       +   V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPPLSSSTEVVVMVLDINDNNPVFAQALYKVEINED----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + L + A D D  TN      ++DG+TN
Sbjct: 2167 -TLTGTDI-LQVFAADGDEGTNGQVRYGIVDGNTN 2199



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3245 IDPNTGIITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3304

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3305 YYFEISEAAPKGTIV 3319



 Score = 38.9 bits (89), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2822 INPNTGDIIISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRFSRPSYY 2880

Query: 75   GYVSEAAPIGALV 87
                E A IG+ V
Sbjct: 2881 LDCPELAEIGSKV 2893



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELRVTQSLDRETKEHFVLVITATD-SGSPALTGTGTINVIVDDVNDNVPTFGSKMYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPAAEVRARSSVASLVIFVNDINDHPPVFAQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------VSATDGDSGLNANL 510



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPNYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQXGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV +  LD  DN P F+Q  Y+  V
Sbjct: 743 GVISTRIALDREEKTAYQLQIVATDGGNLQSPNQAIVTVTVLDTQDNPPVFSQAAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-----AGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G+L   K LD E+   YNL V   ++     +   +   V + +LD NDN P F     T
Sbjct: 1998 GILKVMKALDRESQSFYNLVVQVHDLPQLPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQASDPDSGPNSYIE 2086


>gi|426370103|ref|XP_004052012.1| PREDICTED: protocadherin Fat 3-like [Gorilla gorilla gorilla]
          Length = 969

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G+++T +PL+     +Y L VT  N  G      V + I D ND+TP F Q  Y 
Sbjct: 272 INPRSGLIVTARPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 328

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YV+E+ P+G  VLT       + A DKD   N  +
Sbjct: 329 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 357



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G L    P+D E T +Y L++T  ++   +      + +++ D NDN+P F Q +Y+  +
Sbjct: 631 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 690

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E++ IG  ++        + A DKD  +N 
Sbjct: 691 LESSGIGTEIIQ-------VEARDKDLGSNG 714



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 20  GVLLTKKPLDYEAT-RIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T + LD+E++  IY   V A++       ++  +V + I + NDN+P F ++   G
Sbjct: 376 GVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQG 435

Query: 76  YVSEAAPIGA 85
            +S   P+G 
Sbjct: 436 VISYDFPVGG 445



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           G +   K LDYE  + YNL+V A +        + +   V V  ++ N +TPYF      
Sbjct: 840 GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 899

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
           G V E + IG  VL  T+     R ED  +D E   ++ DGS
Sbjct: 900 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 936


>gi|354492229|ref|XP_003508252.1| PREDICTED: protocadherin gamma-A3-like [Cricetulus griseus]
          Length = 802

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T K LD E    YN+S+ AT+           + +H+ D NDN P FT  +Y+ Y
Sbjct: 395 YYRLVTAKSLDREQVSQYNISLKATDQGNPPLSTETHITLHVSDINDNPPTFTHTSYSAY 454

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P GA + +       + A+D D++ NA
Sbjct: 455 VPENNPRGASIFS-------VTAQDPDTDKNA 479



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           K LDYE    Y + + A +  G  +   ++V +LD NDN P  +  + TG V E AP G 
Sbjct: 299 KSLDYEDAVFYEIKIEAQDGPGLFSRAKLLVKVLDVNDNAPEVSITSLTGSVPEEAPAGR 358

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
            +        +I   D+DS  N 
Sbjct: 359 EI-------ALISVHDRDSGQNG 374



 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+ ++ LD E   ++ L + A++  G   V S    + V +LD NDN P FT+  Y 
Sbjct: 185 YPELVLEQALDREKIAVHQLDLIASD--GGDPVHSGKLCIKVIVLDANDNPPVFTKPEYH 242

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  P+G  ++T       + A D D   NA
Sbjct: 243 VSVLENVPVGTRLIT-------VNATDPDEGFNA 269


>gi|119625348|gb|EAX04943.1| dachsous 2 (Drosophila), isoform CRA_b [Homo sapiens]
 gi|119625350|gb|EAX04945.1| dachsous 2 (Drosophila), isoform CRA_b [Homo sapiens]
          Length = 2527

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 78  KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 135

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 136 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 170



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 1349 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSIYQASV 1407

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE+    A V+        + A D DS  N L++ S
Sbjct: 1408 SESQLYNAHVIQ-------VFATDLDSGLNGLIEYS 1436



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 16/109 (14%)

Query: 8    FAILKPALHPPY-----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHIL 59
            F +     H  Y     G L+    LD EA+  + L + A++ +G   + S   + + +L
Sbjct: 1754 FHVETKFFHSEYPYKQVGYLVLLHSLDREASASHELVILASD-SGCPPLSSTAVISIQVL 1812

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P F+ L+Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 1813 DVNDNPPNFSSLSYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 1854



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V +LD ND+ P F   +++  V 
Sbjct: 1876 GVLYLIKPLDYEKMTKFTLTVQASDAEKKHFSFAVVFVSVLDDNDHAPQFMFSSFSCIVP 1935

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + +  +L
Sbjct: 1936 ENLPISSTICSINAL 1950



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    + L +  +++      +V  + V +LD ND++P F  L Y   V
Sbjct: 1039 GELSTTRALDREQISNFTLVILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTLYYQSSV 1098

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G +V       LV+ A DKD   N 
Sbjct: 1099 REDAEVGTVV-------LVLSAVDKDEGLNG 1122



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++        +++V +LD NDN P F+Q 
Sbjct: 1548 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSVHYTE-GALVVRVLDVNDNPPVFSQD 1606

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 1607 FYQVTVPESIPVGYSVLT 1624



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
           G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 615 GDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 674

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD 103
           V E  PIG LV        V  A+D D
Sbjct: 675 VEENVPIGTLV-------YVFNAKDDD 694



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
           G+L T  PLDYE    + L+V A +  G  A+ S   + V +LD ND  P F Q  Y   
Sbjct: 830 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEAS 888

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E    G  V         + A D+DS  N+ L
Sbjct: 889 VKENQNPGEFVTR-------VEALDRDSGVNSKL 915



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ TK  LDYE T  Y+L V AT+  M        + V + D NDN P F         
Sbjct: 1453 GVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDINDNAPAF--------- 1503

Query: 78   SEAAPIGALVLTNTSLPLVI 97
                P  A+ +T  SLP VI
Sbjct: 1504 ---LPSEAVEITEDSLPGVI 1520



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
           +HP +G L+T   LD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 718 IHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 776

Query: 69  TQLNYTGYVSEAAPIGALV 87
                  +V E   +G+LV
Sbjct: 777 ISFP-NAHVKEDVTVGSLV 794


>gi|119514181|gb|ABL75844.1| protocadherin 2A4 [Takifugu rubripes]
          Length = 949

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           +  L+  K LD E   ++NL +TA +  G K       +++VH+LD NDN+P F + NY 
Sbjct: 187 FAELILTKVLDREQQSVHNLILTAVD--GGKPARSGTVTIVVHVLDTNDNSPTFDKSNYN 244

Query: 75  GYVSEAAPIGALVL 88
             + E +PIG+LV+
Sbjct: 245 LEIMENSPIGSLVI 258



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
           L+P  G +  K  L+YE  +IY++ V AT+         CS+ + + D NDN P  +  +
Sbjct: 291 LNPSTGEITVKGLLNYEDFKIYDMEVIATDKGVNSLSGQCSIKIVVEDMNDNHPEISIKS 350

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           +   V+E   +  ++        V+   DKDS  N ++D
Sbjct: 351 FQTPVNENIDVDTVI-------AVVSVSDKDSGDNGVVD 382



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  +PLD E    Y+++ T T+  G+  +    ++ + +LD NDN P+F Q  YT 
Sbjct: 400 YYELVVSEPLDREKVPEYDITFTVTDR-GSPPLSDNETMTLELLDINDNVPHFPQSFYTI 458

Query: 76  YVSEAAPIGALVLTNTSL 93
            V+E    GAL+ + T+ 
Sbjct: 459 RVTENNAPGALLSSLTAF 476


>gi|431892559|gb|ELK02992.1| Protocadherin beta-5 [Pteropus alecto]
          Length = 795

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E T+ YN+ + AT+  G    C+VI+ ++D NDN P  T    T    E
Sbjct: 298 GDIRLKKALDFETTQYYNVEIAATDGGGLSGKCTVIIQVVDVNDNAPELTMSTLTSSTPE 357

Query: 80  AAP 82
            +P
Sbjct: 358 NSP 360



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 391 LLKPTFKNFY-TLVTESPLDRETRSEYNITITVTDLGTPRLKTQHNITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           I A D+D+  NA
Sbjct: 450 FTQTSYTLFVRENNSPALHIGS-----------ISATDRDAGANA 483



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       ++ V ++D NDN P F+Q  Y  
Sbjct: 191 YPELVLDKALDREEQPELSLTLTALD-GGAPPRSGTTTIRVEVVDINDNAPEFSQSLYEV 249

Query: 76  YVSEAAPIGALVL 88
            V E +P+ +LV+
Sbjct: 250 QVPENSPLNSLVV 262



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA R+    V A +  G+ A+ S   V V +LD NDN+P+
Sbjct: 510 GQLFALRALDYEALRVLEFGVGAADR-GSPALSSQALVRVLVLDANDNSPF 559


>gi|18087739|ref|NP_291055.1| protocadherin gamma-B5 precursor [Mus musculus]
 gi|13876352|gb|AAK26096.1| protocadherin gamma B5 [Mus musculus]
 gi|182888239|gb|AAI60199.1| Protocadherin gamma subfamily B, 5 [synthetic construct]
          Length = 926

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 11/102 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            L+   G ++T+K LD+E  + Y++ V A +  G  A C+V ++I D NDN P  T  + 
Sbjct: 289 GLNSKSGEIITQKTLDFEEIKEYSIVVEARDGGGLVAQCTVEINIQDENDNRPEITVRSL 348

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS----ETNALLD 111
              + E AP G L+        +I+  D DS    E N  LD
Sbjct: 349 LEMIPENAPPGTLI-------ALIKIHDGDSGENGEVNCRLD 383



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+T + LD E T  YN+++TAT+        S  V +H+ D NDN P F Q +Y  Y++E
Sbjct: 400 LVTDRALDRELTPEYNVTITATDRGKPPLSSSTKVTLHVGDVNDNAPLFHQASYLVYIAE 459

Query: 80  AAPIGALV 87
             P GA +
Sbjct: 460 NNPPGASI 467



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E    Y L +TA +           + + + D NDN P F Q  Y   
Sbjct: 191 YPELVLEKTLDREQQNYYRLVLTALDGGDPPLSGTTELRIQVTDANDNPPVFNQEVYKVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G  VL        + A DKD   N+
Sbjct: 251 LPENVPPGTTVLR-------VTATDKDEGVNS 275


>gi|149017354|gb|EDL76405.1| rCG49295, isoform CRA_ao [Rattus norvegicus]
          Length = 615

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD E T  Y + + A++ AG+  +    ++ ++I D NDN P+FTQ  YT Y+ 
Sbjct: 77  LLTSQPLDREVTSHYTIDLLASD-AGSPPLHTHLTIRLNISDVNDNAPHFTQQLYTAYIP 135

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D   NA L
Sbjct: 136 ENRPPGSLLCT-------VAASDPDEGDNARL 160


>gi|189241585|ref|XP_970293.2| PREDICTED: similar to Cad89D CG14900-PA [Tribolium castaneum]
          Length = 1675

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L T KPLD E   +Y L+V A    GA     +  V +H+ D NDN P F    Y G 
Sbjct: 742 GSLYTVKPLDRETRDVYRLTVLAEYSKGAITGTGIYQVTIHVDDENDNKPTFEHSKYEGK 801

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V+E    G    T   L  +I   DKD+  N 
Sbjct: 802 VTENCISG----TEVDLNYLIHVSDKDTGDNG 829



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           PLD E T I+NL + A +  G      +I+ + D NDN P F Q 
Sbjct: 860 PLDREETGIFNLRLVAKDQGGLYDEAILIIMVEDENDNAPTFVQF 904


>gi|194382270|dbj|BAG58890.1| unnamed protein product [Homo sapiens]
          Length = 802

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 15/92 (16%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     +   ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462

Query: 80  AAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
                     N S  L IR   A D+DS TNA
Sbjct: 463 ----------NNSPALHIRSVSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNPPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263


>gi|119625352|gb|EAX04947.1| dachsous 2 (Drosophila), isoform CRA_e [Homo sapiens]
          Length = 2666

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 217 KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 274

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 275 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 309



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 1488 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSIYQASV 1546

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE+    A V+        + A D DS  N L++ S
Sbjct: 1547 SESQLYNAHVIQ-------VFATDLDSGLNGLIEYS 1575



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 16/109 (14%)

Query: 8    FAILKPALHPPY-----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHIL 59
            F +     H  Y     G L+    LD EA+  + L + A++ +G   + S   + + +L
Sbjct: 1893 FHVETKFFHSEYPYKQVGYLVLLHSLDREASASHELVILASD-SGCPPLSSTAVISIQVL 1951

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P F+ L+Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 1952 DVNDNPPNFSSLSYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 1993



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V +LD ND+ P F   +++  V 
Sbjct: 2015 GVLYLIKPLDYEKMTKFTLTVQASDAEKKHFSFAVVFVSVLDDNDHAPQFMFSSFSCIVP 2074

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + +  +L
Sbjct: 2075 ENLPISSTICSINAL 2089



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    + L +  +++      +V  + V +LD ND++P F  L Y   V
Sbjct: 1178 GELSTTRALDREQISNFTLVILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTLYYQSSV 1237

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G +V       LV+ A DKD   N 
Sbjct: 1238 REDAEVGTVV-------LVLSAVDKDEGLNG 1261



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++        +++V +LD NDN P F+Q 
Sbjct: 1687 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSVHYTE-GALVVRVLDVNDNPPVFSQD 1745

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 1746 FYQVTVPESIPVGYSVLT 1763



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
           G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 754 GDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 813

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD 103
           V E  PIG LV        V  A+D D
Sbjct: 814 VEENVPIGTLV-------YVFNAKDDD 833



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L+V A +  G  A+ S   + V +LD ND  P F Q  Y   
Sbjct: 969  GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEAS 1027

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1028 VKENQNPGEFVTR-------VEALDRDSGVNSKL 1054



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ TK  LDYE T  Y+L V AT+  M        + V + D NDN P F         
Sbjct: 1592 GVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDINDNAPAF--------- 1642

Query: 78   SEAAPIGALVLTNTSLPLVI 97
                P  A+ +T  SLP VI
Sbjct: 1643 ---LPSEAVEITEDSLPGVI 1659



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
           +HP +G L+T   LD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 857 IHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 915

Query: 69  TQLNYTGYVSEAAPIGALV 87
                  +V E   +G+LV
Sbjct: 916 ISFP-NAHVKEDVTVGSLV 933


>gi|119625347|gb|EAX04942.1| dachsous 2 (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 3371

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
            K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 922  KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 979

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 980  LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 1014



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 2193 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSIYQASV 2251

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE+    A V+        + A D DS  N L++ S
Sbjct: 2252 SESQLYNAHVIQ-------VFATDLDSGLNGLIEYS 2280



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN 64
           FA+L P   P    L  + PLD E+  +Y L + AT+ AG+  + +   +++ + D ND 
Sbjct: 478 FALL-PGGPPGVFFLCVEGPLDRESRDLYELLLVATD-AGSPPLSTEETLLLRVADLNDQ 535

Query: 65  TPYFTQLNYTGYVSEAAPIGALVL 88
            P F+Q +Y   VSEAA  G +V+
Sbjct: 536 PPLFSQQHYKASVSEAAAPGTVVM 559



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 18   PY---GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            PY   G L+    LD EA+  + L + A++ +G   + S   + + +LD NDN P F+ L
Sbjct: 2610 PYKQVGYLVLLHSLDREASASHELVILASD-SGCPPLSSTAVISIQVLDVNDNPPNFSSL 2668

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 2669 SYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 2698



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V +LD ND+ P F   +++  V 
Sbjct: 2720 GVLYLIKPLDYEKMTKFTLTVQASDAEKKHFSFAVVFVSVLDDNDHAPQFMFSSFSCIVP 2779

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + +  +L
Sbjct: 2780 ENLPISSTICSINAL 2794



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    + L +  +++      +V  + V +LD ND++P F  L Y   V
Sbjct: 1883 GELSTTRALDREQISNFTLVILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTLYYQSSV 1942

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G +V       LV+ A DKD   N 
Sbjct: 1943 REDAEVGTVV-------LVLSAVDKDEGLNG 1966



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++        +++V +LD NDN P F+Q 
Sbjct: 2392 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSVHYTE-GALVVRVLDVNDNPPVFSQD 2450

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 2451 FYQVTVPESIPVGYSVLT 2468



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+    G + T + LD E      L V A ++      A C V + + D NDN P F + 
Sbjct: 607 AIDSESGAISTIRTLDREVQEAVELKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQ 666

Query: 72  NYTGYVSEAAPIGALVLTNTS 92
            Y   ++E AP+G   L  T+
Sbjct: 667 VYNATIAEHAPVGHCFLQVTA 687



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ TK  LDYE T  Y+L V AT+  M        + V + D NDN P F         
Sbjct: 2297 GVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDINDNAPAFL-------- 2348

Query: 78   SEAAPIGALVLTNTSLPLVI 97
                P  A+ +T  SLP VI
Sbjct: 2349 ----PSEAVEITEDSLPGVI 2364



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 1459 GDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 1518

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD 103
            V E  PIG LV        V  A+D D
Sbjct: 1519 VEENVPIGTLV-------YVFNAKDDD 1538



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L+V A +  G  A+ S   + V +LD ND  P F Q  Y   
Sbjct: 1674 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEAS 1732

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1733 VKENQNPGEFVTR-------VEALDRDSGVNSKL 1759



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP +G L+T   LD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 1562 IHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 1620

Query: 69   TQLNYTGYVSEAAPIGALV 87
                   +V E   +G+LV
Sbjct: 1621 ISFP-NAHVKEDVTVGSLV 1638



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 50  AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            + SV + +LD NDN P F Q  Y   V E A  GA V         +RA D+D   N  
Sbjct: 278 GLLSVELRVLDENDNPPVFEQDEYRAAVREDAQPGAEVCR-------VRATDRDLGPNGF 330

Query: 110 L 110
           +
Sbjct: 331 V 331


>gi|268571259|ref|XP_002640985.1| C. briggsae CBR-CDH-12 protein [Caenorhabditis briggsae]
          Length = 1707

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 37/51 (72%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            ++LT++P+D EA +++ L+VTA N  G+ +   ++V +LD NDN+P F +L
Sbjct: 1388 LILTRRPMDNEAGKVHQLNVTAENSKGSDSTVVIVVTVLDDNDNSPVFLKL 1438


>gi|256220048|ref|NP_001157760.1| protocadherin gamma-C5 [Rattus norvegicus]
 gi|239919014|gb|ACS34823.1| protocadherin gamma C5 [Rattus norvegicus]
          Length = 944

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD E T  Y + + A++ AG+  +    ++ ++I D NDN P+FTQ  YT Y+ 
Sbjct: 406 LLTSQPLDREVTSHYTIDLLASD-AGSPPLHTHLTIRLNISDVNDNAPHFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D   NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDEGDNARL 489



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPNTGAIHVLGPVDFEESNFYEIHARARDQGQPAMEGHCVIQVDVGDANDNPPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPVLESTPVGTVV-------GLFNVRDRDSGRNG 383



 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD EA   + L +TA +    A++  S+I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDREAQARHQLVLTAVDGGTPARSGTSLISVIVLDINDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             P G L+L        + A D D  TN  LD
Sbjct: 254 NTPPGTLLLR-------LNATDPDEGTNGQLD 278


>gi|326673337|ref|XP_003199846.1| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 801

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ KK LD E   ++NL +TA +  +       S++V +LD NDN P F + +YT  
Sbjct: 193 FADLILKKALDRETQAVHNLILTAVDGGVPPRSGTASIMVRVLDANDNAPKFDKDSYTIN 252

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E APIG+LV+        + A D D  +NA L
Sbjct: 253 LTENAPIGSLVVK-------LNATDLDEGSNAEL 279



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
           +L+P  G +  K+ ++YE  RIY++ V A++         C + V I D NDN P  +  
Sbjct: 296 SLNPDSGEIRVKEMVNYEDFRIYDMEVIASDKGTHPLSGQCKLSVLITDMNDNHPEISIK 355

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           ++   V E   +  ++        V+   DKDS  N  +D
Sbjct: 356 SFQSTVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 388



 Score = 34.7 bits (78), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 406 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 465

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 466 VMENNAPGA 474


>gi|109078974|ref|XP_001087513.1| PREDICTED: protocadherin beta-12 [Macaca mulatta]
          Length = 795

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 18/115 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
           S P  L  +LK +++  Y  L T++PLD E+   YN+++T T++     K   ++ V + 
Sbjct: 384 SVPEDLPFVLKSSVNN-YYTLETERPLDRESRAEYNITITVTDLGTPRLKTEYNITVLVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNAL+
Sbjct: 443 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNALV 486



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           PLD+E    Y++ + AT+  G     +V + ++D NDN P  T  + T  + E+ P    
Sbjct: 306 PLDFETIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPESTP---- 361

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
                ++ +V R  D+DS  N 
Sbjct: 362 ----ETVVMVFRIRDRDSGDNG 379



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  K LDYE     +  +TA +        + +V ++  D NDN P F Q  Y   
Sbjct: 191 YPELVLDKALDYEERPELSFILTALDGGSPPRSGTALVRVVVVDINDNFPEFEQAFYEVK 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E + +G+LV+T       + A D DS TN+ L
Sbjct: 251 IPENSTLGSLVVT-------VLAWDLDSGTNSEL 277


>gi|270001266|gb|EEZ97713.1| cadherin-like protein [Tribolium castaneum]
          Length = 1840

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G L T KPLD E   +Y L+V A    GA     +  V +H+ D NDN P F    Y G 
Sbjct: 826 GSLYTVKPLDRETRDVYRLTVLAEYSKGAITGTGIYQVTIHVDDENDNKPTFEHSKYEGK 885

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V+E    G    T   L  +I   DKD+  N 
Sbjct: 886 VTENCISG----TEVDLNYLIHVSDKDTGDNG 913



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           PLD E T I+NL + A +  G      +I+ + D NDN P F Q 
Sbjct: 944 PLDREETGIFNLRLVAKDQGGLYDEAILIIMVEDENDNAPTFVQF 988


>gi|158259103|dbj|BAF85510.1| unnamed protein product [Homo sapiens]
          Length = 798

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 15/92 (16%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     +   ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462

Query: 80  AAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
                     N S  L IR   A D+DS TNA
Sbjct: 463 ----------NNSPALHIRSVSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263


>gi|344265582|ref|XP_003404862.1| PREDICTED: protocadherin gamma-A7-like [Loxodonta africana]
          Length = 822

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T K LD E   +YN++V AT+  G   + S   + +H+ D NDN P F+  +Y+ 
Sbjct: 401 YYRLVTMKNLDRERLSVYNITVKATD-GGTPPLSSETHISIHVADTNDNPPTFSHTSYSV 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +V E  P GA + +       + A D DSE NA
Sbjct: 460 FVPENNPKGASIFS-------VTAHDPDSEENA 485



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L T K LDYE +  Y + V A +  G+     V++ ILD NDN P  T  + T  V E
Sbjct: 299 GELSTLKGLDYEDSSFYEMEVQAQDGPGSLTRTKVLITILDVNDNAPEVTVTSLTSSVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +   +D+DS  N 
Sbjct: 359 DTPPGTVI-------ALFYLQDRDSGKNG 380



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   I++L +TA++        +  + V ++D ND+ P F+   Y   
Sbjct: 191 YPELVLERALDREEEAIHHLLLTASDGGNPLRSGIARIQVTVMDVNDHAPVFSLPQYRVT 250

Query: 77  VSEAAPIGALVLT 89
             E  P+G  +LT
Sbjct: 251 TPENVPVGTTLLT 263


>gi|26331732|dbj|BAC29596.1| unnamed protein product [Mus musculus]
          Length = 802

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
            LKP+    Y  LL++KPLD E+   YN+++T  +M     K   ++ V + D NDN P 
Sbjct: 393 FLKPSGENFY-TLLSQKPLDRESVAEYNITITVADMGSPILKTQVNLTVQVSDINDNAPI 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E    A  IG            I A D DS +NA
Sbjct: 452 FTQTSYTMFIRENNSPALHIG-----------TISATDSDSGSNA 485



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +        +  VHI  LD NDN P F QL Y   
Sbjct: 192 YPELVLDRALDREEEAELRLTLTAQDGGSLPRSGTTEVHIEVLDINDNAPQFEQLFYKAQ 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG L++T       + A DKD   N 
Sbjct: 252 IPEDSPIGFLIIT-------VSATDKDIGVNG 276



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           ++HP  G +  K+ LD+E T+ Y +++ A +       C+++  +LD ND+ P      +
Sbjct: 294 SIHPLTGEVRLKEHLDFEKTQSYEINIEARDAGTFSGKCTILAQVLDVNDHAPEIILSAF 353

Query: 74  TGYVSEAAP 82
           T  + E  P
Sbjct: 354 TNSILENLP 362



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V + +LD NDN P+         
Sbjct: 512 GQLFVLRALDYEALQAFEFHVGATD-GGSPALSSQALVRMVVLDDNDNAPFVLYPMQNAS 570

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 571 APYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 603


>gi|11036654|ref|NP_061756.1| protocadherin beta-13 precursor [Homo sapiens]
 gi|13431381|sp|Q9Y5F0.1|PCDBD_HUMAN RecName: Full=Protocadherin beta-13; Short=PCDH-beta-13; Flags:
           Precursor
 gi|5457033|gb|AAD43753.1|AF152492_1 protocadherin beta 13 [Homo sapiens]
 gi|14009455|gb|AAK51613.1|AF217745_1 protocadherin-beta13 [Homo sapiens]
 gi|21620005|gb|AAH33068.1| Protocadherin beta 13 [Homo sapiens]
 gi|30411001|gb|AAH51348.1| Protocadherin beta 13 [Homo sapiens]
 gi|37181979|gb|AAQ88793.1| PCDHB13 [Homo sapiens]
 gi|47939613|gb|AAH71934.1| Protocadherin beta 13 [Homo sapiens]
 gi|119582374|gb|EAW61970.1| protocadherin beta 13 [Homo sapiens]
          Length = 798

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 15/92 (16%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     +   ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462

Query: 80  AAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
                     N S  L IR   A D+DS TNA
Sbjct: 463 ----------NNSPALHIRSVSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 41.2 bits (95), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263


>gi|109732291|gb|AAI15721.1| Protocadherin beta 16 [Mus musculus]
          Length = 802

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
            LKP+    Y  LL++KPLD E+   YN+++T  +M     K   ++ V + D NDN P 
Sbjct: 393 FLKPSGENFY-TLLSQKPLDRESVAEYNITITVADMGSPILKTQVNLTVQVSDINDNAPI 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E    A  IG            I A D DS +NA
Sbjct: 452 FTQTSYTMFIRENNSPALHIG-----------TISATDSDSGSNA 485



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +        +  VHI  LD NDN P F QL Y   
Sbjct: 192 YPELVLDRALDREEEAELRLTLTAQDGGSLPRSGTTEVHIEVLDINDNAPQFEQLFYKAQ 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG L++T       + A DKD   N 
Sbjct: 252 IPEDSPIGFLIIT-------VSATDKDIGVNG 276



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           ++HP  G +  K+ LD+E T+ Y +++ A +       C+++  +LD ND+ P      +
Sbjct: 294 SIHPLTGEVRLKEHLDFEKTQSYEINIEARDAGTFSGKCTILAQVLDVNDHAPEIILSAF 353

Query: 74  TGYVSEAAP 82
           T  + E  P
Sbjct: 354 TNSILENLP 362



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+         
Sbjct: 512 GQLFVLRALDYEALQAFEFHVGATD-GGSPALSSQALVRVVVLDDNDNAPFVLYPMQNAS 570

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 571 APYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 603


>gi|426229728|ref|XP_004008938.1| PREDICTED: protocadherin beta-10 [Ovis aries]
          Length = 799

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G ++ +  LDYE  + Y +++ A +  G  + CSV V +LD NDN P     + +
Sbjct: 294 INPFSGEIILRLLLDYELVKSYKINIQAIDGGGLSSKCSVWVEVLDTNDNAPELIISSLS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +V E +P  AL         V R +D+DS  N 
Sbjct: 354 NHVVENSPETALA--------VFRIKDRDSGENG 379



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 7/94 (7%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDR 61
           P  L  +LKP++   Y +L+T++ LD E    YN+++T T+M     K   ++ V + D 
Sbjct: 386 PDHLPFLLKPSVENFY-ILMTEEALDRERQAEYNITITVTDMGTPRLKTEHNITVLVSDV 444

Query: 62  NDNTPYFTQLNYTGYVSE----AAPIGALVLTNT 91
           NDN P FTQ +YT +V E    A  IG++  T+T
Sbjct: 445 NDNAPAFTQTSYTLWVRENNSPALHIGSVSATDT 478



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E  + ++L++TA +  +       ++ + ILD NDN P F+Q  Y   
Sbjct: 191 YPELVLDRALDREKQQEFSLTLTALDGGLPPRSGATNIHIVILDVNDNAPQFSQAIYETQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E +P+G+ +         + A D DS  NA
Sbjct: 251 APENSPVGSFIAQ-------VSAGDADSGINA 275


>gi|397504069|ref|XP_003822631.1| PREDICTED: protocadherin-23-like [Pan paniscus]
          Length = 2770

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 277 KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 334

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 335 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 369



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 1592 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSVYQASV 1650

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE+    A V+        + A D DS  N L++ S
Sbjct: 1651 SESQLYNAHVIQ-------VFATDLDSGLNGLIEYS 1679



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 18   PY---GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            PY   G L+    LD EA+  + L + A++ +G   + S   + + +LD NDN P F+ L
Sbjct: 2009 PYKQVGYLVLLHSLDREASASHELVILASD-SGCPPLSSTAVISIQVLDVNDNPPNFSSL 2067

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 2068 SYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 2097



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L T + LD E    + L++  +++      +V  + V +LD ND++P F  L
Sbjct: 1276 AINEMSGELSTTRALDREQISNFTLAILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTL 1335

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   V E A +G +V       LV+ A DKD   N 
Sbjct: 1336 YYQSSVREDAEVGTVV-------LVLSAVDKDEGLNG 1365



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V++LD ND+ P F   +++  V 
Sbjct: 2119 GVLYLIKPLDYEEMTKFTLTVQASDAEKKHFSFAVVFVNVLDDNDHAPQFMFSSFSCIVP 2178

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + +  +L
Sbjct: 2179 ENLPISSTICSINAL 2193



 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++        +++V +LD NDN P F+Q 
Sbjct: 1791 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSV-HHTEGALVVRVLDVNDNPPVFSQD 1849

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 1850 FYQVTVPESIPVGYSVLT 1867



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP +G L+T  PLD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 961  IHPSFGTLVTVSPLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 1019

Query: 69   TQLNYTGYVSEAAPIGALV 87
                   +V E   +G+LV
Sbjct: 1020 MSFP-IAHVKEDVTVGSLV 1037



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
           G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 858 GDLFLSKELDYEMTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 917

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD 103
           V E  PIG LV        V  A+D D
Sbjct: 918 VEENVPIGTLV-------YVFNAKDDD 937



 Score = 38.1 bits (87), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L+V A +  G  A+ S   + V +LD ND  P F Q  Y   
Sbjct: 1073 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEAS 1131

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1132 VKENQNPGEFVTR-------VEALDRDSGVNSKL 1158



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ TK  LDYE T  Y+L V AT+  M        + V + D NDN P F         
Sbjct: 1696 GVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDINDNAPAF--------- 1746

Query: 78   SEAAPIGALVLTNTSLPLVI 97
                P  A+ +T  SLP VI
Sbjct: 1747 ---LPSEAVEITEDSLPGVI 1763


>gi|262263233|tpg|DAA06610.1| TPA_inf: protocadherin gamma b8 isoform [Anolis carolinensis]
          Length = 939

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD+E+   ++L +TA +           +++ ++D NDNTP FTQ  Y   
Sbjct: 192 YAELVLNKQLDHESESSFHLILTAVDGGEPAKTGTAKILIAVIDGNDNTPVFTQKTYMVN 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           + E AP G+LV+        ++A D+D+ +NA ++
Sbjct: 252 LRENAPSGSLVVQ-------VKATDRDAGSNAQIN 279



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT  PLD E+T  YN+S+ AT+          ++ + + D NDN P F + +YT YV E
Sbjct: 405 LLTDGPLDRESTPEYNISIIATDKGTPPLSTEKTIFLKLSDINDNAPAFEKSSYTSYVPE 464

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P GA +         ++A D D E N  +
Sbjct: 465 NNPSGASIFR-------VQASDPDLERNGQI 488



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+E T  Y +++ A +  G  A C+V + +LD NDN P     + +  + E
Sbjct: 300 GKITVKEDLDFEETEKYVMTIEARDGGGLVAQCNVEIKLLDVNDNAPEVILASLSSPIPE 359

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + +G LV         +   D+DS  N 
Sbjct: 360 DSAVGTLV-------AFVNVNDRDSGENG 381


>gi|326914711|ref|XP_003203666.1| PREDICTED: cadherin-23-like [Meleagris gallopavo]
          Length = 2399

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G ++ K   DYE    Y L+V A N   A   +A  +V V ++D NDN P F Q +Y+  
Sbjct: 1575 GNIMIKNSPDYENVNKYTLTVNAVNNKSAPFYQATTNVTVLVIDVNDNAPVFVQNSYSAS 1634

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            ++   P+GA V+T       + A DKD   N L++
Sbjct: 1635 INMINPVGAHVIT-------VHATDKDQGQNGLIE 1662



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++L KK LD E   IY+L V A++    +   V ++ V I D NDN P F    Y   V
Sbjct: 594 GLILLKKELDREMQGIYDLEVIASDQGQPRLSTVLNLTVVIDDVNDNPPVFLSSRYEVTV 653

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E    G+ +LT       + A D D+ TNAL+
Sbjct: 654 PEDKAHGSELLT-------VSATDLDAGTNALV 679



 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G     + LDYE T+ + + + A++           V++H+LD NDN P F Q  Y   V
Sbjct: 702 GQFFLSQQLDYETTKQFEVELEASDGGQPSLNTSTQVVIHVLDVNDNPPKFNQATYDIVV 761

Query: 78  SE----AAPIGALVLTNTSLPLVIRAE 100
            E     +PI    +T+      + AE
Sbjct: 762 VENIQKGSPICTFSVTDDDEVWAVDAE 788



 Score = 40.8 bits (94), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + TK  LDYE+   Y L+++ ++        +V + + D NDN+P F   N T  + E
Sbjct: 495 GTIWTKIKLDYESQNNYILNISLSD-GITTDYATVFIQVTDVNDNSPVFGVTNTTIKIPE 553

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G  V   TS+P    A D D+  N L+
Sbjct: 554 NTPAGTFV---TSVP----ATDVDTGFNGLV 577



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-VCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G ++  K LDY     +NL+V A    G  +   S+I+ + D +   PYF+   Y G +S
Sbjct: 121 GNIMVNKTLDYNKINHFNLTVQAKERFGNNSNTVSLIIDVQDYDTLNPYFSLPVYNGTIS 180

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
           E   +G L +    LP  + A+D D+  N
Sbjct: 181 ENQ-LGPLSI----LPEKVLAKDGDTGIN 204



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +L    +D E    Y L + A++  M   +    + + +LD NDN P FT+++Y   +
Sbjct: 869 GTILVNGYVDRETKEKYELLLVASDNGMPQRQNFTYISIQVLDVNDNVPLFTKMHYLASI 928

Query: 78  SEA-APIGALVLTNTSLPLVI 97
             A A  GA VL+ ++  L I
Sbjct: 929 HVATAKEGAFVLSVSATDLDI 949


>gi|149017356|gb|EDL76407.1| rCG49295, isoform CRA_aq [Rattus norvegicus]
 gi|149017357|gb|EDL76408.1| rCG49295, isoform CRA_aq [Rattus norvegicus]
          Length = 512

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD E T  Y + + A++ AG+  +    ++ ++I D NDN P+FTQ  YT Y+ 
Sbjct: 77  LLTSQPLDREVTSHYTIDLLASD-AGSPPLHTHLTIRLNISDVNDNAPHFTQQLYTAYIP 135

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D   NA L
Sbjct: 136 ENRPPGSLLCT-------VAASDPDEGDNARL 160


>gi|47059046|ref|NP_060109.2| protocadherin-23 isoform 1 [Homo sapiens]
 gi|74762378|sp|Q6V1P9.1|PCD23_HUMAN RecName: Full=Protocadherin-23; AltName: Full=Cadherin-27; AltName:
           Full=Cadherin-like protein CDHJ; AltName:
           Full=Cadherin-like protein VR8; AltName: Full=Protein
           dachsous homolog 2; AltName: Full=Protocadherin PCDHJ
 gi|38049487|gb|AAR10443.1| cadherin protein [Homo sapiens]
          Length = 2916

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 423 KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 480

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 481 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 515



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 1738 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSIYQASV 1796

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE+    A V+        + A D DS  N L++ S
Sbjct: 1797 SESQLYNAHVIQ-------VFATDLDSGLNGLIEYS 1825



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 16/109 (14%)

Query: 8    FAILKPALHPPY-----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHIL 59
            F +     H  Y     G L+    LD EA+  + L + A++ +G   + S   + + +L
Sbjct: 2143 FHVETKFFHSEYPYKQVGYLVLLHSLDREASASHELVILASD-SGCPPLSSTAVISIQVL 2201

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P F+ L+Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 2202 DVNDNPPNFSSLSYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 2243



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V +LD ND+ P F   +++  V 
Sbjct: 2265 GVLYLIKPLDYEKMTKFTLTVQASDAEKKHFSFAVVFVSVLDDNDHAPQFMFSSFSCIVP 2324

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + +  +L
Sbjct: 2325 ENLPISSTICSINAL 2339



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++        +++V +LD NDN P F+Q 
Sbjct: 1937 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSVHYTE-GALVVRVLDVNDNPPVFSQD 1995

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 1996 FYQVTVPESIPVGYSVLT 2013



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    + L +  +++      +V  + V +LD ND++P F  L Y   V
Sbjct: 1428 GELSTTRALDREQISNFTLVILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTLYYQSSV 1487

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G +V       LV+ A DKD   N 
Sbjct: 1488 REDAEVGTVV-------LVLSAVDKDEGLNG 1511



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 1004 GDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 1063

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD 103
            V E  PIG LV        V  A+D D
Sbjct: 1064 VEENVPIGTLV-------YVFNAKDDD 1083



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ TK  LDYE T  Y+L V AT+  M        + V + D NDN P F         
Sbjct: 1842 GVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDINDNAPAF--------- 1892

Query: 78   SEAAPIGALVLTNTSLPLVI 97
                P  A+ +T  SLP VI
Sbjct: 1893 ---LPSEAVEITEDSLPGVI 1909



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L+V A +  G  A+ S   + V +LD ND  P F Q  Y   
Sbjct: 1219 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEAS 1277

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1278 VKENQNPGEFVTR-------VEALDRDSGVNSKL 1304



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP +G L+T   LD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 1107 IHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 1165

Query: 69   TQLNYTGYVSEAAPIGALV 87
                   +V E   +G+LV
Sbjct: 1166 ISFP-NAHVKEDVTVGSLV 1183


>gi|148728175|ref|NP_444371.3| protocadherin beta 16 precursor [Mus musculus]
 gi|13876292|gb|AAK26066.1| protocadherin beta 16 [Mus musculus]
 gi|109733261|gb|AAI16626.1| Protocadherin beta 16 [Mus musculus]
 gi|148678208|gb|EDL10155.1| mCG141291 [Mus musculus]
          Length = 802

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
            LKP+    Y  LL++KPLD E+   YN+++T  +M     K   ++ V + D NDN P 
Sbjct: 393 FLKPSGENFY-TLLSQKPLDRESVAEYNITITVADMGSPILKTQVNLTVQVSDINDNAPI 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E    A  IG            I A D DS +NA
Sbjct: 452 FTQTSYTMFIRENNSPALHIG-----------TISATDSDSGSNA 485



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +        +  VHI  LD NDN P F QL Y   
Sbjct: 192 YPELVLDRALDREEEAELRLTLTAQDGGSLPRSGTTEVHIEVLDINDNAPQFEQLFYKAQ 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E +PIG L++T       + A DKD   N 
Sbjct: 252 IPEDSPIGFLIIT-------VSATDKDIGVNG 276



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 36/69 (52%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           ++HP  G +  K+ LD+E T+ Y +++ A +       C+++  +LD ND+ P      +
Sbjct: 294 SIHPLTGEVRLKEHLDFEKTQSYEINIEARDAGTFSGKCTILAQVLDVNDHAPEIILSAF 353

Query: 74  TGYVSEAAP 82
           T  + E  P
Sbjct: 354 TNSILENLP 362



 Score = 38.1 bits (87), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V + +LD NDN P+         
Sbjct: 512 GQLFVLRALDYEALQAFEFHVGATD-GGSPALSSQALVRMVVLDDNDNAPFVLYPMQNAS 570

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 571 APYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 603


>gi|10433211|dbj|BAB13935.1| unnamed protein product [Homo sapiens]
          Length = 744

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 15/92 (16%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     +   ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462

Query: 80  AAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
                     N S  L IR   A D+DS TNA
Sbjct: 463 ----------NNSPALHIRSVSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263


>gi|403256560|ref|XP_003920939.1| PREDICTED: protocadherin alpha-2 [Saimiri boliviensis boliviensis]
          Length = 815

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 15/102 (14%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTP 66
           K  + P  G + TK  LDYE ++ Y + VTAT+     M+G    C +++ +LD NDNTP
Sbjct: 286 KFKIDPSSGEIRTKGKLDYEESKSYEIQVTATDKGIPSMSGH---CKILLKLLDINDNTP 342

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  + +  +SE A +G ++        +I   D+DS TN 
Sbjct: 343 EVSITSLSLPISENASLGTVI-------ALITVSDRDSGTNG 377



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E    Y L VTA +       A  SV V + D NDN P F Q  YT +
Sbjct: 398 YYSLVLDSALDRETVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFEQPEYTVF 457

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A+D D++ NAL+
Sbjct: 458 VKENNPPGCHIFT-------VSAQDADAQENALV 484



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+  K LD E T   NL + AT+  G K        +++ +LD NDN P F Q  Y   +
Sbjct: 188 LVLGKSLDREETAEINLLLVATD--GGKPELTGTVQILIKVLDVNDNEPSFAQSVYKVKL 245

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G LV+        + A D D  +N+
Sbjct: 246 LENTANGTLVVK-------LNASDADEGSNS 269


>gi|351701751|gb|EHB04670.1| Protocadherin Fat 4 [Heterocephalus glaber]
          Length = 4953

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   GVL   K LDYE  + + ++++AT+         CSV + ++D NDN+P F   
Sbjct: 3137 AINSSTGVLTLAKALDYELCQKHEITISATDGGWVARTGYCSVTITVIDVNDNSPVFVPD 3196

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3197 EYFPTVLENAPSGTTVIH-------LNATDNDSGTNAVI 3228



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y LSV A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1890 LNPVTGVFNLTRVLDYEAQQYYILSVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1949

Query: 75   GYVSEAAPIGALVL 88
              + E  P+G+ VL
Sbjct: 1950 TSLMENLPVGSTVL 1963



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L+V +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 2722 GEIRSIRPLDREKVSHYMLTVKSSDKGSPSQSTSVKVIINILDENDNAPRFSQI-FSAHV 2780

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
             E +P+G +V   T+        D+D  TNA+
Sbjct: 2781 PENSPLGYIVTRVTT-------SDEDIGTNAI 2805



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1363 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1422

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1423 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1454



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      +V  + V +LD NDN+P F  + 
Sbjct: 633 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGTPPQSSVAQINVSLLDMNDNSPVFYPVQ 692

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 693 YFAHIQENEPGGSYITT 709



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAVDRGVPSLLGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1272 LDYEATPAYFLVIQAVDSGTVSLNSTCTLNIDILDENDNTPCFPKSTLFVDVLENMRIGE 1331

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1332 LVSS-------VTATDSDSGDNADL 1349



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI+  ++ D
Sbjct: 934  NPKNLFAI-----NEKNGNISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTLYVHD 987

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN P F QL+Y   +SE+ P+ +           ++A D+DS  N 
Sbjct: 988  VNDNPPVFDQLSYEVTLSESEPVNSRFFK-------VQASDEDSGANG 1028



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 47/96 (48%), Gaps = 16/96 (16%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LD E    Y L V AT+  G  A+ S   V+V +LD NDN P F Q  Y   ++E     
Sbjct: 2111 LDREEVSNYTLMVVATD-KGQPALSSSTEVVVMVLDINDNNPVFAQALYKVEINED---- 2165

Query: 85   ALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
               LT T + L + A D D  TN      ++DGSTN
Sbjct: 2166 --TLTGTDI-LQVFAADGDEGTNGQVRYGIVDGSTN 2198



 Score = 40.8 bits (94), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1047 PDGQLYIKSELDRELQDRYVLVVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1106

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1107 YFEEEQRAGSFV 1118



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ TK  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 742 GVISTKMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 801

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 802 FENVALG 808



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 15/91 (16%)

Query: 28  LDYEATRIYNLSVTATNMAGA--------KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LD E    YNL+V+ ++  GA         +V S+++ + D ND+ P F Q  Y   +SE
Sbjct: 426 LDRERIPSYNLTVSVSDNHGAPPAEVQARSSVASLVIFVNDINDHPPVFAQQVYRVNLSE 485

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AP G+ V         + A D DS  NA L
Sbjct: 486 EAPPGSYVSG-------VSATDGDSGLNANL 509



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L   + LD E    + L +TAT+          +V V + D NDN P F    Y   +
Sbjct: 2313 GELRVTQSLDRETKEHFVLVITATDSGFPALTGTGTVNVIVDDVNDNVPTFASKMYFTTI 2372

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 PEDAPTGTDV-------LLVNASDADASTNAVI 2398



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPHYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L V A N+   +  +  +V + +   N+  P F    
Sbjct: 3242 IDPNTGVITTQGFLDFETKQSYHLIVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3301

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3302 YYFEISEAAPKGTIV 3316



 Score = 37.7 bits (86), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2819 INPSTGDIIISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRFSRPSYY 2877

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2878 LDCPELTDIGSKV 2890



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1997 GVLKVLKALDRESQSFYNLVVQVHDLPQVPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2056

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2057 -YIPENTPIDTVVFK-------AQASDPDSGPNSYIE 2085


>gi|347543891|gb|AEP02518.1| PCDH15, partial [Hipposideros armiger]
          Length = 1925

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+  PYFT  +
Sbjct: 333 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDVNNQNPYFTMPS 392

Query: 73  YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +  + +L  PL I   DKD E
Sbjct: 393 YQGYILESAPVGSTICDSVNLTSPLQIMVLDKDVE 427



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
           G + T+  LD E    Y L V AT+ A      +++  + +LD +DN+P FT   YT  V
Sbjct: 762 GSIYTRVKLDREVRDYYELVVVATDGAVHPRHSTLVLAIRVLDIDDNSPVFTNSTYTVVV 821

Query: 78  SEAAPIGALVL 88
            E  P G   L
Sbjct: 822 EENLPAGTTFL 832



 Score = 38.5 bits (88), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  ++TA +         V + I+D NDNTP F +++Y  YV
Sbjct: 460 QPVDREEQQTYIFTITAFDGVQESEPVVVNIRIMDANDNTPTFPEVSYDVYV 511



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDY     Y L V A ++    A            V + I D ND+ P F +
Sbjct: 1080 GVIYVNAPLDYGTKTSYVLRVQADSLEVVLANLRVPSKSNRAKVYIEIQDENDHPPVFQK 1139

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + + VL        ++A DKD+
Sbjct: 1140 KLYIGGVSEDARMFSSVLK-------VKATDKDT 1166


>gi|148664769|gb|EDK97185.1| mCG140834 [Mus musculus]
          Length = 796

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 47/94 (50%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD EAT  Y + VTA +      +A  SV V + D NDN P F Q  YT +
Sbjct: 404 YYSLVLDSALDREATADYKVMVTARDGGSPSLRATASVSVEVADVNDNAPVFAQPEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P GA + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGAHIFT-------VSAMDADAQENALV 490



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 11/100 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
           K  + P  G + TK  LDYE    Y + V A++  G  A+   C + V ++D NDNTP  
Sbjct: 292 KFQIDPNSGEVRTKGELDYEERTSYEIQVIASD-KGTPAMSGHCKISVKLVDINDNTPEV 350

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + +  V E AP+GA++        +I   D+DS  N 
Sbjct: 351 SITSLSLPVQENAPLGAVI-------ALISVSDRDSGVNG 383



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 16/106 (15%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
           ++H   G +   +PLD+E   +    VTA + AG  A+ S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVFALQPLDHEELELLQFQVTARD-AGVPALGSNVTLQVFVLDENDNAPLLLP 567

Query: 69  -TQLNYTGYVSEAAP--IGA-LVLTNTSLPLVIRAEDKDSETNALL 110
              +   G VSE  P  +G+  V+T       +RA D DS  NA L
Sbjct: 568 QGAVGVGGSVSELVPRSVGSGHVVTK------VRAVDADSGYNAWL 607


>gi|403272515|ref|XP_003928104.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-23-like [Saimiri
           boliviensis boliviensis]
          Length = 2899

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T++PLD+E   +  L+V A    G+   CS   V V +LD NDN P F
Sbjct: 412 KFSIHPWLGTIRTRRPLDHETQPVVVLTVQA--QLGSAPACSSTEVNVTVLDVNDNHPAF 469

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 470 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 504



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+ P  GV++  K LD+E    Y L +  ++    +   +++V +LD NDN P F+Q 
Sbjct: 1921 KFAIDPNTGVVVLVKTLDFEEVTEYRLLIQISDSV-HRTEGALVVRVLDVNDNLPVFSQE 1979

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 1980 FYQVTVPESIPVGYSVLT 1997



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP +G L+T  PLD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 1091 IHPSFGTLVTVSPLDRESLPTVTLTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHKPTF 1149

Query: 69   TQLNYTGYVSEAAPIGALV 87
                +  +V E   +G+LV
Sbjct: 1150 MSFPF-AHVKEDVTVGSLV 1167



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 15/94 (15%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            Y VLL    LD EA+  + +++ A++       A AV S+   +LD NDN P F+ L+Y 
Sbjct: 2145 YLVLL--HSLDREASASHEIAILASDSGCPPLSATAVISI--QVLDVNDNPPNFSSLSYH 2200

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 2201 THVKESTPLGSHI-------TVVSANDRDTGSHA 2227



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V++LD ND+ P F   +++  V 
Sbjct: 2249 GVLYLIKPLDYEEMTKFTLTVQASDAEKKHFSFAVVFVNVLDDNDHAPQFMFSSFSCVVP 2308

Query: 79   EAAPIGALVLTNTSL 93
            E  P+ + + + ++L
Sbjct: 2309 ENLPVSSTICSISAL 2323



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A   V V I D NDN+P F Q  Y   V
Sbjct: 1722 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYSKVAVLIQDMNDNSPCFEQSIYQASV 1780

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE     A ++        + A D DS  N L++ S
Sbjct: 1781 SEGQFYNASIIQ-------VFATDLDSGLNGLIEYS 1809



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCSVIVHILDRNDNTPYF 68
            + P  G +  ++ LDYE+T+ YN  V A    +        +VIVH+ D NDN P F
Sbjct: 624 GIRPYTGWIYLRRQLDYESTQTYNFRVFAWIPEDGLLQNVSTAVIVHVRDENDNFPTF 681



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L+V A +  G  A+ S   + + +LD ND  P F Q  Y   
Sbjct: 1203 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTITVLDVNDEAPVFKQQLYEAS 1261

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V+        + A D+DS  N+ L
Sbjct: 1262 VKENQNPGEFVIR-------VEALDRDSGVNSKL 1288



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRN 62
            + FAI K +     G L T + LD E    + L++  +++ G     SVI   V +LD N
Sbjct: 1403 EYFAINKMS-----GELSTTRALDREQVSNFTLAILCSDL-GEPPRSSVIHLQVRVLDAN 1456

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D++P F    Y   V E A +G +V       L++ A DKD   N 
Sbjct: 1457 DHSPSFPTPYYQSSVREDAEVGTVV-------LMLSAVDKDEGLNG 1495



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 988  GDLFLFKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 1047

Query: 77   VSEAAPIGALV 87
            V E  PIG LV
Sbjct: 1048 VEENVPIGTLV 1058


>gi|119625349|gb|EAX04944.1| dachsous 2 (Drosophila), isoform CRA_c [Homo sapiens]
          Length = 2776

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 327 KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 384

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 385 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 419



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 1598 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSIYQASV 1656

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE+    A V+        + A D DS  N L++ S
Sbjct: 1657 SESQLYNAHVIQ-------VFATDLDSGLNGLIEYS 1685



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 16/109 (14%)

Query: 8    FAILKPALHPPY-----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHIL 59
            F +     H  Y     G L+    LD EA+  + L + A++ +G   + S   + + +L
Sbjct: 2003 FHVETKFFHSEYPYKQVGYLVLLHSLDREASASHELVILASD-SGCPPLSSTAVISIQVL 2061

Query: 60   DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D NDN P F+ L+Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 2062 DVNDNPPNFSSLSYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 2103



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L+V A++      +   V V +LD ND+ P F   +++  V 
Sbjct: 2125 GVLYLIKPLDYEKMTKFTLTVQASDAEKKHFSFAVVFVSVLDDNDHAPQFMFSSFSCIVP 2184

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + +  +L
Sbjct: 2185 ENLPISSTICSINAL 2199



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    + L +  +++      +V  + V +LD ND++P F  L Y   V
Sbjct: 1288 GELSTTRALDREQISNFTLVILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTLYYQSSV 1347

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G +V       LV+ A DKD   N 
Sbjct: 1348 REDAEVGTVV-------LVLSAVDKDEGLNG 1371



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++        +++V +LD NDN P F+Q 
Sbjct: 1797 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSVHYTE-GALVVRVLDVNDNPPVFSQD 1855

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 1856 FYQVTVPESIPVGYSVLT 1873



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
           G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 864 GDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 923

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKD 103
           V E  PIG LV        V  A+D D
Sbjct: 924 VEENVPIGTLV-------YVFNAKDDD 943



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L+V A +  G  A+ S   + V +LD ND  P F Q  Y   
Sbjct: 1079 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEAS 1137

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1138 VKENQNPGEFVTR-------VEALDRDSGVNSKL 1164



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+ TK  LDYE T  Y+L V AT+  M        + V + D NDN P F         
Sbjct: 1702 GVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDINDNAPAF--------- 1752

Query: 78   SEAAPIGALVLTNTSLPLVI 97
                P  A+ +T  SLP VI
Sbjct: 1753 ---LPSEAVEITEDSLPGVI 1769



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP +G L+T   LD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 967  IHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 1025

Query: 69   TQLNYTGYVSEAAPIGALV 87
                   +V E   +G+LV
Sbjct: 1026 ISFP-NAHVKEDVTVGSLV 1043


>gi|89994747|ref|NP_444375.2| protocadherin beta 20 precursor [Mus musculus]
 gi|13876302|gb|AAK26071.1| protocadherin beta 20 [Mus musculus]
 gi|21595186|gb|AAH31895.1| Protocadherin beta 20 [Mus musculus]
 gi|26337851|dbj|BAC32611.1| unnamed protein product [Mus musculus]
 gi|26454692|dbj|BAC32346.1| unnamed protein product [Mus musculus]
          Length = 799

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           ILKP+    +  LL++K LD E    YN+++TA++M   +     ++ V + D NDN P 
Sbjct: 392 ILKPSFKN-FFTLLSEKALDRERRAEYNITITASDMGTPRLTTQHTIRVQVSDINDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E    A  IG            I A DKDS +NA
Sbjct: 451 FTQTSYTMFIYENNSPALHIG-----------TISATDKDSGSNA 484



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +  +D+E  + Y++++ AT+  G  A C++ V +LD NDN P     + T
Sbjct: 294 INPTSGEVNLRSLMDFEVIQSYSVNIQATDGGGLSAKCTLSVKVLDINDNAPEVIMSSVT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E A        + +L  +    D+DS  N 
Sbjct: 354 KAIPENA--------SETLVALFSVRDQDSGDNG 379



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD+E      L++TA +           +++ +LD NDN P F Q  Y   
Sbjct: 191 YPELVLDKALDHEEESELRLTLTALDGGSPPRSGTTLIVIKVLDINDNAPEFAQSFYEVQ 250

Query: 77  VSEAAPIGALV 87
           V E  PIG+ +
Sbjct: 251 VPEDMPIGSSI 261



 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYE  + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 511 GQLFALRALDYEVLQAFEFQVGATDR-GSPALSSQTLVRVVVLDDNDNAPFVLYPMQNAS 569

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P    V     L   + A D+DS  NA L
Sbjct: 570 APCTELLP---RVAEPGYLVTKVVAVDRDSGQNAWL 602


>gi|148678204|gb|EDL10151.1| mCG141284 [Mus musculus]
          Length = 806

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           ILKP+    +  LL++K LD E    YN+++TA++M   +     ++ V + D NDN P 
Sbjct: 399 ILKPSFKN-FFTLLSEKALDRERRAEYNITITASDMGTPRLTTQHTIRVQVSDINDNAPA 457

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E    A  IG            I A DKDS +NA
Sbjct: 458 FTQTSYTMFIYENNSPALHIG-----------TISATDKDSGSNA 491



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +  +D+E  + Y++++ AT+  G  A C++ V +LD NDN P     + T
Sbjct: 301 INPTSGEVNLRSLMDFEVIQSYSVNIQATDGGGLSAKCTLSVKVLDINDNAPEVIMSSVT 360

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E A        + +L  +    D+DS  N 
Sbjct: 361 KAIPENA--------SETLVALFSVRDQDSGDNG 386



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD+E      L++TA +           +++ +LD NDN P F Q  Y   
Sbjct: 198 YPELVLDKALDHEEESELRLTLTALDGGSPPRSGTTLIVIKVLDINDNAPEFAQSFYEVQ 257

Query: 77  VSEAAPIGALV 87
           V E  PIG+ +
Sbjct: 258 VPEDMPIGSSI 268



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYE  + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 518 GQLFALRALDYEVLQAFEFQVGATDR-GSPALSSQTLVRVVVLDDNDNAPFVLYPMQNAS 576

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P    V     L   + A D+DS  NA L
Sbjct: 577 APCTELLP---RVAEPGYLVTKVVAVDRDSGQNAWL 609


>gi|292620491|ref|XP_002664313.1| PREDICTED: protocadherin-10-like [Danio rerio]
          Length = 799

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ KK LD E   ++NL +TA +  +       S++V +LD NDN P F + +YT  
Sbjct: 191 FADLILKKALDRETQAVHNLILTAVDGGVPPRSGTASIMVRVLDANDNAPKFDKDSYTIN 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E APIG+LV+        + A D D  +NA L
Sbjct: 251 LTENAPIGSLVVK-------LNATDLDEGSNAEL 277



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
           +L+P  G +  K+ ++YE  RIY++ V A++         C + V I D NDN P  +  
Sbjct: 294 SLNPDSGEIRVKEMVNYEDFRIYDMEVIASDKGTHPLSGQCKLSVLITDMNDNHPEISIK 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           ++   V E   +  ++        V+   DKDS  N  +D
Sbjct: 354 SFQSTVKEDVAVNTVI-------AVVSVSDKDSGENGQVD 386



 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LL  +PLD E    Y++++T T+          ++ + +LD NDN P F Q  YT  
Sbjct: 404 YYELLVSEPLDREKLPEYDITITVTDRGNPPLSDNETITLELLDVNDNVPQFPQTFYTIP 463

Query: 77  VSEAAPIGA 85
           V E    GA
Sbjct: 464 VMENNAPGA 472


>gi|14039481|gb|AAK53238.1|AF326313_1 protocadherin-betaT [Mus musculus]
          Length = 844

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           ILKP+    +  LL++K LD E    YN+++TA++M   +     ++ V + D NDN P 
Sbjct: 437 ILKPSFKN-FFTLLSEKALDRERRAEYNITITASDMGTPRLTTQHTIRVQVSDINDNAPA 495

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E    A  IG            I A DKDS +NA
Sbjct: 496 FTQTSYTMFIYENNSPALHIG-----------TISATDKDSGSNA 529



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  +  +D+E  + Y++++ AT+  G  A C++ V +LD NDN P     + T
Sbjct: 339 INPTSGEVNLRSLMDFEVIQSYSVNIQATDGGGLSAKCTLSVKVLDINDNAPEVIMSSVT 398

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E A        + +L  +    D+DS  N 
Sbjct: 399 KAIPENA--------SETLVALFSVRDQDSGDNG 424



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD+E      L++TA +           +++ +LD NDN P F Q  Y   
Sbjct: 236 YPELVLDKALDHEEESELRLTLTALDGGSPPRSGTTLIVIKVLDINDNAPEFAQSFYEVQ 295

Query: 77  VSEAAPIGALV 87
           V E  PIG+ +
Sbjct: 296 VPEDMPIGSSI 306



 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYE  + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 556 GQLFALRALDYEVLQAFEFQVGATDR-GSPALSSQTLVRVVVLDDNDNAPFVLYPMQNAS 614

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P    V     L   + A D+DS  NA L
Sbjct: 615 APCTELLP---RVAEPGYLVTKVVAVDRDSGQNAWL 647


>gi|391338304|ref|XP_003743499.1| PREDICTED: LOW QUALITY PROTEIN: cadherin-related tumor
            suppressor-like [Metaseiulus occidentalis]
          Length = 4957

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T+  LD E    Y L V A +         C+V+V + D+NDN+P FT+L ++  V
Sbjct: 2735 GKVFTRSKLDRETMSRYRLIVQAVDRGFPANTGTCTVMVEVADKNDNSPRFTRL-FSANV 2793

Query: 78   SEAAPIGALVLTNTSL 93
            SE A IG  V+  TS+
Sbjct: 2794 SEDATIGTFVIQMTSI 2809



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
            +L+P  GV      LDYE  + Y   V+A + AG  ++ S +   ++++D NDN+P F  
Sbjct: 1893 SLNPQTGVFTLTSNLDYEQYQHYIFVVSAQD-AGVPSLSSTVTVYMNVIDFNDNSPVFDP 1951

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            L+YT  V E AP+   VL+       + A D DS  N  +
Sbjct: 1952 LSYTAEVREDAPLNTTVLS-------VHASDLDSGPNGEI 1984



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G+L     LD E    Y + V A +       A  ++IVH+LD NDN+P F Q 
Sbjct: 2103 SIGPVDGLLRVNSELDRELKSEYQIIVVAKDRGKPPLSATTTIIVHVLDENDNSPVFEQR 2162

Query: 72   NYTGYVSEAAPIGALVL 88
             Y   +SE +P+   V+
Sbjct: 2163 QYEAVMSENSPVEKSVI 2179



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G L T   LD E+   YNL+V A +  +       +V+V I D NDN PYF    
Sbjct: 3463 IDPNTGDLHTASNLDRESMSHYNLTVGAIDNGIPSQTGQTTVLVTIADVNDNAPYFENTE 3522

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
              GY++E  P    V       +V+ A+DKD+  N
Sbjct: 3523 IVGYIAENEPPYTSV-------MVLSAKDKDAPPN 3550



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDN 64
            +LFAI   +     GVL++K   D+E    + L V A+N    +   + + VH+L RN+ 
Sbjct: 3248 RLFAIDDVS-----GVLVSKAIFDFEQQAAFELEVVASNPGTVQFTSTKLTVHVLGRNEF 3302

Query: 65   TPYFTQLNYTGYVSEAAPIGALV 87
             P FTQ  +    SE+ P+G  V
Sbjct: 3303 YPKFTQRIFEFQASESDPVGKFV 3325



 Score = 41.6 bits (96), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 28/114 (24%)

Query: 6    QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRN 62
            Q F I       P G +  K+ LD+E    Y L VTA +  GA+   S +   +HI+D N
Sbjct: 1039 QKFGIF------PDGQMFVKEALDHEHHDFYVLVVTARD-NGARPRSSSVPLTIHIIDDN 1091

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLT------NTSLPLVIRAEDKDSETNALL 110
            DN P F             P G LV +        S   ++ AED DS  NA L
Sbjct: 1092 DNVPRF------------VPNGNLVFSIVENQEPDSFVGILVAEDADSGRNAEL 1133



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+ P  G +     LD E    YNL VT  + A  K    + + + D NDN+P F + 
Sbjct: 2830 KFAIDPVSGNVTVAGSLDRELKDEYNLKVTVFDGAWKKDT-PLTITVTDVNDNSPQFGKT 2888

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
             YT Y++E   I + V        +I+A D+D E
Sbjct: 2889 EYTFYLAEKQVIQSYV-------GLIQAIDRDKE 2915



 Score = 38.5 bits (88), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28  LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    YNL+  AT+        +  +I+ + D ND+ P F +  Y+  +SE   +G+
Sbjct: 419 LDREKVPWYNLTFVATDKGTPSRSTIKFLIIRVNDVNDHEPQFEKSEYSVVLSETVNVGS 478

Query: 86  LVLTNTSLPLVIRAEDKDSETNALL 110
            V       + + A D+D+  NAL+
Sbjct: 479 YV-------VAVSATDEDTGVNALV 496



 Score = 38.1 bits (87), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 15/105 (14%)

Query: 14   ALHPPYGVLLTKKPLDYEA-----TRIY---NLSVTATNMAGAKAVCSVIVHILDRNDNT 65
            A+ P  GV+ + K  D E      +  Y     SV+       K+   ++VH+LD NDN 
Sbjct: 1145 AVDPRSGVIRSLKSFDREKLVETMSHDYITVEASVSDNGNPRLKSETRIVVHVLDENDNP 1204

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            P F++  Y   +SE+ P       NT +  V  A D D   N ++
Sbjct: 1205 PVFSRKVYKSPISESTP------ANTQIARV-SATDPDDGPNGMI 1242



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L T   LD E    Y L+++A +         +IV+I  LD NDN P F    Y+  ++E
Sbjct: 185 LETVATLDREQKEFYRLNISAEDGGNPPMHGYLIVNITVLDTNDNPPIFDHSAYSVSMNE 244

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + P G  VL        + A D D+  NA +
Sbjct: 245 SLPAGHRVLQ-------VHASDADAGDNARI 268



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 16/103 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            GV+   K +DYE    Y ++V A + +       C + + + D NDN P F    Y   +
Sbjct: 2214 GVIRVHKQVDYERKNRYVITVQAEDSSTEARHDTCMISITLKDVNDNPPTFLDNPYEASI 2273

Query: 78   SEAAPI---GALVLTNTSLPLVIRAEDKDSETN-----ALLDG 112
             E A I   G L++T       ++A D D+++N      LLDG
Sbjct: 2274 VENAIIPSGGGLLITQ------MQAVDVDADSNRNIYYRLLDG 2310



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   + LD E    Y  +V A +    +     ++I+ + DRNDN P F +  Y  +V
Sbjct: 2322 GNVYAMRSLDREQQSEYTATVLAIDSGTPRLTGTGTLILSVSDRNDNAPVFEKPFYEIHV 2381

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE  P    +         I A D D   NALL
Sbjct: 2382 SENLPADTFIAK-------ITATDSDQGLNALL 2407



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 11/88 (12%)

Query: 20   GVLLTKKPLDYEAT-RIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTG 75
            GV+ T  PLD E     Y + + AT+        A    I+ + DRND  P FT + Y  
Sbjct: 1689 GVIETATPLDRELQPEPYEVIIYATDRNARTPMTAKTKAIIRVSDRNDTPPRFTGVPYAI 1748

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             +SE A     +LT       + AED D
Sbjct: 1749 RISEDAATSTTILT-------VHAEDPD 1769



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA-KAVCSVIVHIL--DRNDNTPYFTQL 71
            L P  GVL+ K+  D E    ++L V  T+   A K   +V V +L  D NDN P F + 
Sbjct: 2420 LDPQTGVLIAKRSFDREKHASFDLEVNCTDSGLAIKKWTAVSVRVLIDDVNDNAPEFHRS 2479

Query: 72   NYTGYVSE 79
             Y+  V E
Sbjct: 2480 IYSIKVDE 2487



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM-AGAKAVCSVIVHILDRNDNTPYFTQ--LNYTGY 76
            G +   K LDYE  + Y+L + A N+ +   A   + V + D NDN+P  +Q   N T  
Sbjct: 2631 GAVFVAKKLDYETVKEYSLWIQAENINSKLSAATELQVRVQDVNDNSPMCSQAVFNVTVM 2690

Query: 77   VSEAAP 82
              +A P
Sbjct: 2691 EEQAPP 2696


>gi|395504742|ref|XP_003756706.1| PREDICTED: protocadherin beta-2-like [Sarcophilus harrisii]
          Length = 790

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L    G L  K+ +D+E+T+ Y +++ AT+  G  A C+VIV ++D NDN P  T  + T
Sbjct: 294 LKEELGELYLKEKVDFESTQFYTINIQATDGGGLSAECTVIVQVIDLNDNPPELTISSLT 353

Query: 75  GYVSEAAP 82
             + E +P
Sbjct: 354 SPIPENSP 361



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 18/104 (17%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYF 68
           LKP++   Y +L+T+  LD E    YN+++T  ++     K+  ++ V I D NDN+P F
Sbjct: 393 LKPSIEN-YYMLVTEGALDREYKAEYNITITVMDLGFPKLKSEYNLTVFISDVNDNSPVF 451

Query: 69  TQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           TQ  YT Y+ E    A  IG+           + A D+DS  NA
Sbjct: 452 TQRAYTLYLQENNSPALHIGS-----------VSASDRDSGINA 484



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +  +        V + I+D NDN P F QL Y   
Sbjct: 191 YPELVLDETLDREKQSEVILTLTAVDGGVPPRSGTAQVRILIVDINDNAPVFAQLRYEVQ 250

Query: 77  VSEAAPIGALVLT 89
           + E +PIG+ V+T
Sbjct: 251 IPENSPIGSKVVT 263


>gi|311250363|ref|XP_003124077.1| PREDICTED: protocadherin gamma-A8-like [Sus scrofa]
          Length = 874

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
           Y  L+T K LD E T +YN++V A+++ G  ++ + I   +H+ D NDN P F Q  Y+ 
Sbjct: 401 YYRLVTWKHLDREETSLYNITVMASDL-GTPSLSTEIHIALHVADTNDNPPSFPQTAYST 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + +       + A D DS  NA
Sbjct: 460 YIPENNPRGASIFS-------VTAHDPDSGNNA 485



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E    ++L + A++    +   +V V +  LD NDN P F Q  Y   V E
Sbjct: 194 LVLQRALDREEEAAHHLVLMASDGGDPRRSSTVHVRVTVLDTNDNAPVFAQPVYRVKVPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G L+LT       + A D D  TN 
Sbjct: 254 NVPPGTLLLT-------VSASDPDEGTNG 275



 Score = 38.1 bits (87), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G +   K LDYE    Y++ + A +    K    V++ + D NDN P  T  +  
Sbjct: 294 LNEQTGEISAAKSLDYEECAFYDMEIQAEDGGALKDRAKVLISVEDVNDNRPEVTVTSLF 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  P G ++         +   D+DS  N 
Sbjct: 354 SPVLENTPPGTVI-------AFLNVHDQDSGKNG 380


>gi|194757998|ref|XP_001961249.1| GF13772 [Drosophila ananassae]
 gi|190622547|gb|EDV38071.1| GF13772 [Drosophila ananassae]
          Length = 3584

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFTQLNYT 74
           GV+ T+  LD E +  Y+L VTA +MA A+     A  SV+V +LD NDN P F++  YT
Sbjct: 527 GVISTRSSLDRETSDSYHLLVTAADMASAQSERRTATASVLVKVLDDNDNYPQFSERTYT 586

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E    G    +  +    IRA D D   NA +
Sbjct: 587 VQVPEDQWGG----SEDNTVAHIRATDADQGNNAAI 618



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   + LDY+  + + L+V AT+  G     +V ++I D N+  P F    Y+  V E
Sbjct: 848 GLITIAQSLDYKQEKRFVLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFE 907

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            AP+G  V       LV+ A D D   NA +  S N
Sbjct: 908 DAPVGTTV-------LVVSATDSDVGVNAQITYSLN 936



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
            + P  G + T K LD E+  +Y+L+  A +        +V V I   D ND+ P F    
Sbjct: 1057 IDPTSGTIRTNKGLDRESVAVYHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFPSDK 1116

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             T YV E +P+G++V         I A D D   NA++
Sbjct: 1117 ITLYVPENSPVGSVVGE-------IHAHDPDEGVNAVV 1147



 Score = 43.5 bits (101), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KPLDYE+ R Y L + A +           ++V+++D NDN P F    +   V E  P+
Sbjct: 644 KPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPV 703

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G  ++        ++A D D   NA
Sbjct: 704 GYNIIR-------VQAYDSDEGANA 721



 Score = 41.2 bits (95), Expect = 0.076,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ T   LD E   ++   V AT+          ++ V++LD ND++P F    +   +
Sbjct: 413 GVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPSFEAEQFEASI 472

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E A +G+ V+T       +RA D+D   NA ++
Sbjct: 473 REGATVGSTVIT-------LRATDQDIGKNAEIE 499



 Score = 40.4 bits (93), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A+ P  G + T KPLD E    +   V A +  +    A  SV++ + D NDN P F   
Sbjct: 737 AVDPRTGWVQTIKPLDREEQARFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPK 796

Query: 72  NYTGYVSEAAPIGALVLTNTS 92
            Y   V E  P G  V T T+
Sbjct: 797 YYEANVGEDQPPGTPVTTVTA 817



 Score = 37.4 bits (85), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++T  PLD E T  Y L+VTA +           V + + D NDN P F    Y   +
Sbjct: 956  GAIVTSAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSPLYQASI 1015

Query: 78   SEAAPIGALVL 88
             E A +G  V+
Sbjct: 1016 LEDALVGTSVI 1026


>gi|126345242|ref|XP_001370051.1| PREDICTED: protocadherin beta-2-like [Monodelphis domestica]
          Length = 796

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           K +D+EAT+ Y + + AT+  G    C+V++H++D NDN P  T  + T  + E +P   
Sbjct: 305 KTVDFEATQFYEIDIEATDGGGLSGKCTVVIHVIDLNDNLPKLTISSITNPIPENSP--- 361

Query: 86  LVLTNTSLPLVIRAEDKDSETNALL 110
                 ++  V R  D DS  N  +
Sbjct: 362 -----ETVVAVFRVSDLDSGENGRM 381



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 18/104 (17%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF 68
           LKP++   Y  L+T+  LD E    YN+++T  ++     K   ++ + I D NDN P F
Sbjct: 393 LKPSVEN-YYTLVTEGALDRERRAEYNITITVMDLGSPRLKTEHNITIWISDINDNPPVF 451

Query: 69  TQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           T   Y  Y+ E    A  IG+           + A D+DS  NA
Sbjct: 452 TLTAYKLYLQENNSPALHIGS-----------VSARDRDSGINA 484



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           + V I+D NDN P F + NY   
Sbjct: 191 YPELVLNKALDREELPEIRLTLTALDGGSPPRSGTAQIRVLIVDVNDNAPEFGRQNYEVR 250

Query: 77  VSEAAPIGALVL 88
           + E +P G+LV+
Sbjct: 251 IPENSPPGSLVV 262


>gi|24580686|ref|NP_523446.2| dachsous [Drosophila melanogaster]
 gi|22945533|gb|AAF51468.3| dachsous [Drosophila melanogaster]
          Length = 3556

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +PLD E    Y L + A++    K+    C++ + + D+NDN P F    YTG V E
Sbjct: 1904 LSARPLDREQHSRYTLQIQASDRGQPKSRQGHCNITIFVEDQNDNAPRFKLSKYTGSVQE 1963

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+G  V+        I A D D   NA L
Sbjct: 1964 DAPLGTSVVQ-------ISAVDADLGVNARL 1987



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
             + P  G +  + PLD E    Y L+V AT+     A A   VIV +LD NDN P F + 
Sbjct: 1097 GIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKS 1156

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   + E    G++V        V+ A D D   NA +
Sbjct: 1157 KYEFRIEENLRRGSVV-------GVVTASDLDLGENAAI 1188



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  GV+ T+  LD+E   IY L V A++      + V  + V +LD NDN P FT  
Sbjct: 1309 SIDPTSGVIRTRVVLDHEERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSS 1368

Query: 72   NYTGYVSEAAPIGALV 87
            +    V E A +G +V
Sbjct: 1369 SLVFRVREDAALGHVV 1384



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 16/107 (14%)

Query: 7    LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRND 63
            LFAI   + H     L+  + LDYE+++ + L VTAT+  G  ++ +   ++V + D ND
Sbjct: 978  LFAIDARSGH-----LILSQHLDYESSQRHTLIVTATD-GGVPSLSTNLTILVDVQDVND 1031

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            N P F +  Y+  VSE+  I A ++        + A D D+  NA +
Sbjct: 1032 NPPVFEKDEYSVNVSESRSINAQIIQ-------VNASDLDTGNNARI 1071



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 33/126 (26%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY------ 73
            G++ +    DYE  + Y++ + A++M G KA  +V V I  R++ TP FT+  Y      
Sbjct: 2921 GLVTSAFVFDYEQRQRYDMELLASDMGGKKASVAVRVEIESRDEFTPQFTERTYRFVLPA 2980

Query: 74   -----TGYV--------SEAAPIGALV-----------LTNTSLPLVIRAE---DKDSET 106
                  GYV        S++ P G +V           +  +S  ++I+ +   D D + 
Sbjct: 2981 AVALPQGYVVGQVTATDSDSGPDGRVVYQLSAPHSHFKVNRSSGAVLIKRKLKLDGDGDG 3040

Query: 107  NALLDG 112
            N  +DG
Sbjct: 3041 NLYMDG 3046



 Score = 42.4 bits (98), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G++ T+  +D E   +  L+V A +  +    +  +V+V I D NDN P F Q  
Sbjct: 556 IDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSF 615

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Y   V+E  P+G  +L        + A D D   NA+++
Sbjct: 616 YNVSVAENEPVGRCILK-------VSASDPDCGVNAMVN 647



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 18/102 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L  + PLD+EA + Y L V A + +       +   +V + ILD ND+ P+F   N +
Sbjct: 1549 GALSLQAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDHAPHFVSPNSS 1608

Query: 75   G------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G      ++S+A  IG +V         I A D+DS  N  L
Sbjct: 1609 GGKTASLFISDATRIGEVVAH-------IVAVDEDSGDNGQL 1643



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT--Q 70
            +HP  G + T++PLD E   +Y+L V A +       A   V +H+ D NDN P     Q
Sbjct: 1201 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1260

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V E  P G  V+        +RA D+D   NA
Sbjct: 1261 EDVVS-VREEQPPGTEVVR-------VRAVDRDHGQNA 1290



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            GVL     LDY++  + Y L + A +    + +CS+    + + D NDN P F    Y  
Sbjct: 2810 GVLFVNNRLDYDSGAKSYELIIRACDSHHQRPLCSLQPFRLELHDENDNEPKFPLTEYVH 2869

Query: 76   YVSEAAPIGALVL 88
            +++E  P+G+ V 
Sbjct: 2870 FLAENEPVGSSVF 2882



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 27  PLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           PLD E    Y LSV AT+       A  S+ + I D NDN P F Q  Y   V E A  G
Sbjct: 461 PLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANVMEVADPG 520

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + A D+D   N+ L
Sbjct: 521 TSVLQ-------VLAHDRDEGLNSAL 539



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP---------YFTQ 70
            G L+ K+ LDYE  + Y L V A++ A  +A   + V + D NDN P         YF  
Sbjct: 2485 GKLVLKRRLDYELQQEYELDVIASD-AAHEARTVLTVRVNDENDNAPVFLAQQPPAYFAI 2543

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            L     +SE+  +   +LT       + A D DSE N
Sbjct: 2544 LPAISEISESLSVDFDLLT-------VNATDADSEGN 2573



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            +++PA     G++ T   LD E   IY L + AT+    +     ++ V I+D NDN P 
Sbjct: 2371 VIEPAFS---GIVRTNIVLDREIRDIYKLKIIATDEGVPQMTGTATIRVQIVDVNDNQPT 2427

Query: 68   FTQLNYTGYVSEAAPIGALVLT 89
            F   N    VSEA  +GA++ +
Sbjct: 2428 FPPNNLV-TVSEATELGAVITS 2448



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E T  Y+L + A +      +   +V + I D NDN P F Q  Y   V E A +G 
Sbjct: 244 LDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGT 303

Query: 86  LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            VL        + A D D++ N L++ + N
Sbjct: 304 SVLQ-------VYASDTDADENGLVEYAIN 326



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L+  + LD E    + L +     TA+N   + A+ +V + + D NDN P + Q    
Sbjct: 1433 GNLVVARLLDREVQSEFRLEIRALDTTASNNPQSSAI-TVKIEVADVNDNAPEWPQDPID 1491

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSEA P+G ++   T       A D D+ TN  L
Sbjct: 1492 LQVSEATPVGTIIHNFT-------ATDADTGTNGDL 1520



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++ T   LD E    YN  V AT+    +   A   V +++LD NDN P F +  Y G 
Sbjct: 2006 GLITTVGKLDRELQASYNFMVLATDGGRYEVRSATVPVQINVLDINDNRPIFERYPYIGQ 2065

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V       AL+    +L L ++A D D   NA
Sbjct: 2066 VP------ALIQPGQTL-LKVQALDADLGANA 2090



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 6    QLFAILKPALHPPYGVLLTK-----KPLDYEATRIYNLSVTATNMAG--------AKAVC 52
            Q  AI+       + +L +K     KPLD E   +Y L +  ++  G        + +  
Sbjct: 2677 QSLAIIAGNEESAFELLQSKAIVLVKPLDRERNDLYKLRLVLSHPHGPPLISSLNSSSGI 2736

Query: 53   SVIVHILDRNDNTPYFTQ-LNYTGYVSEAAPI 83
            SVI+ ILD NDN P F +   Y   +SE AP+
Sbjct: 2737 SVIITILDANDNFPIFDRSAKYEAEISELAPL 2768


>gi|410913697|ref|XP_003970325.1| PREDICTED: protocadherin-10-like [Takifugu rubripes]
          Length = 818

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 6/74 (8%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           +  L+  K LD E   ++NL +TA +  G K       +++VH+LD NDN+P F + NY 
Sbjct: 187 FAELILTKVLDREQQSVHNLILTAVD--GGKPARSGTVTIVVHVLDTNDNSPTFDKSNYN 244

Query: 75  GYVSEAAPIGALVL 88
             + E +PIG+LV+
Sbjct: 245 LEIMENSPIGSLVI 258



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
           L+P  G +  K  L+YE  +IY++ V AT+         CS+ + + D NDN P  +  +
Sbjct: 291 LNPSTGEITVKGLLNYEDFKIYDMEVIATDKGVNSLSGQCSIKIVVEDMNDNHPEISIKS 350

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           +   V+E   +  ++        V+   DKDS  N ++D
Sbjct: 351 FQTPVNENIDVDTVI-------AVVSVSDKDSGDNGVVD 382



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  +PLD E    Y+++ T T+  G+  +    ++ + +LD NDN P+F Q  YT 
Sbjct: 400 YYELVVSEPLDREKVPEYDITFTVTD-RGSPPLSDNETMTLELLDINDNVPHFPQSFYTI 458

Query: 76  YVSEAAPIGALVLTNTSL 93
            V+E    GAL+ + T+ 
Sbjct: 459 RVTENNAPGALLSSLTAF 476


>gi|344265561|ref|XP_003404852.1| PREDICTED: protocadherin alpha-7 [Loxodonta africana]
          Length = 788

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ + PLD E+   Y+L VTA +       A  S+ V + D NDN P F Q  YT +V E
Sbjct: 407 LVLESPLDRESLSAYDLVVTAQDRGSPSLSATVSLSVEVADVNDNAPAFEQPEYTVFVKE 466

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G  + T       + A D D++ NAL+
Sbjct: 467 NNPPGCHIFT-------VSAHDADTQENALV 490



 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           +D+E ++ Y + V  T+          +V+V ++D NDN P  T  + +  +SE A  G 
Sbjct: 308 IDFEESKAYKVRVQVTDQGALPLSGHSTVLVDVVDANDNAPELTITSLSLPISEDAQPGT 367

Query: 86  LVLTNTSLPLVIRAEDKDSETNA 108
           ++        +I   D+DS  N 
Sbjct: 368 VI-------TLISVSDRDSGANG 383


>gi|260785516|ref|XP_002587807.1| hypothetical protein BRAFLDRAFT_92256 [Branchiostoma floridae]
 gi|229272960|gb|EEN43818.1| hypothetical protein BRAFLDRAFT_92256 [Branchiostoma floridae]
          Length = 4039

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTG-YVS 78
            GV++ ++PLDYE T+ Y L+V A +  G  +  +V V++ D NDN P F    Y+   +S
Sbjct: 1798 GVIILRRPLDYEQTQHYVLTVQARDGGGRASSVTVYVNVKDLNDNPPVFDPDRYSADDIS 1857

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G  +LT       + A D+D
Sbjct: 1858 EDVPAGTSILT-------VSATDRD 1875



 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + ++  LDYE  ++Y L VTATN+  +     C+V +H+  +N+  P F Q  YT  +
Sbjct: 3214 GEITSQGGLDYERKQMYTLQVTATNVEASSRFGTCTVNIHLTGQNEYAPVFLQRLYTFEI 3273

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            SE+A  G  V T   +    R +  D   N +L GS+N
Sbjct: 3274 SESAETGTTVGT---VYATDRDDGPDGIVNYILVGSSN 3308



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  +  LD E    Y L V A +  +    AV +V V ILD NDN P F    Y  
Sbjct: 1059 PDGNLYVRNALDREVQSRYVLIVEAQDNGVEAKSAVANVTVEILDENDNRPLFANSTYNL 1118

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++ E AP   +V        ++ A D+D+ TNA L
Sbjct: 1119 FLDEEAPAQTMV-------ALVTAVDRDAGTNAEL 1146



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRND 63
           +L     P+    +  L T + LD E    Y L+++A +         ++V+I   D ND
Sbjct: 204 ELVVTTNPSGEASFLHLQTNQNLDREIRSSYQLNISAQDGGSPPRYGYLLVNISVRDSND 263

Query: 64  NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           N P F Q  Y   ++E+APIG  VLT       +RA D D  TNA +
Sbjct: 264 NPPIFDQSEYIVSLNESAPIGTSVLT-------VRATDIDEGTNAEI 303



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T   LD E    YNL+VTAT+     A     V+V+I D NDN P F   N TGYV
Sbjct: 3426 GIISTASRLDRETIDTYNLTVTATDTGIPPATGTTYVVVNIDDINDNGPEFIPPNVTGYV 3485

Query: 78   SE-AAPIGALVLTNT 91
             E  AP   + L+ T
Sbjct: 3486 LENRAPTTVMTLSAT 3500



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 17/99 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTPYFTQLN 72
            G ++T   LD E   +YNL V AT+ A        + A   +IV+  D NDN P F   N
Sbjct: 1948 GTIVTAAALDREQNYLYNLVVMATDRAIPAYMRLSSTAQVEIIVN--DINDNPPRFVTPN 2005

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             T  V E +P+  +V+T       IRAED D E N+ ++
Sbjct: 2006 VTS-VYENSPVNTVVMT-------IRAEDPDEERNSYVE 2036



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYT 74
           P   ++   + LD E T  YNL++ AT+      + + ++I+++ D ND+ P F +  Y 
Sbjct: 432 PGLSIVKVARSLDREITDQYNLTMRATDHGNPPRRTIANLIIYVNDINDHEPVFERTRYN 491

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +SE  PIG+ V         + A D DS  NA +
Sbjct: 492 TTLSERVPIGSYVQG-------VTATDDDSGLNAQV 520



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT 69
            K AL    G L     LD EAT  Y ++VTAT+       A   + +++LDRNDN P F 
Sbjct: 2046 KFALDSVTGQLRVNGDLDREATPSYIVTVTATDKGRPPMSASMDLTINLLDRNDNNPVFG 2105

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             ++Y   V E   +G      T L  V+ A D D  TN ++
Sbjct: 2106 PVSYDVSVLEDVAVG------TELVQVV-AADVDEGTNGVV 2139



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K LDYE+T +Y L++TA++  G   + +VI   +++LD NDN P F   +    
Sbjct: 1381 GKLYLAKALDYESTNVYRLNITASDH-GTPPLSTVIPFAINVLDSNDNPPTFPPGDTVRQ 1439

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++E   +  ++ T       + A D DS +N  +
Sbjct: 1440 ITEGVGLNTVIAT-------VTATDPDSGSNGEI 1466



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 10/99 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + PP  V L ++ LDYE T  +NL + A  ++     +   + + + D NDN P F+Q  
Sbjct: 2571 VSPPGQVRL-RRSLDYEETSSFNLWMEARDSDTPALSSYHRLTIALADVNDNPPIFSQDP 2629

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            Y G V E       VLT       + A D DS +N   +
Sbjct: 2630 YVGSVGENEGTLTSVLT-------VSASDADSGSNGEFE 2661



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFT 69
           K  + P  G + T   LD E    Y L VTA +  G  +    ++ V ++D  DN P F+
Sbjct: 746 KFTISPQSGQITTTAELDREVRASYQLEVTARDGTGQSSASPATIDVTVVDIQDNPPEFS 805

Query: 70  QLNYTGYVSEAAPIGALV 87
           Q  Y   + E   IG  V
Sbjct: 806 QPGYNFVIFENVEIGKSV 823



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            ++P  G + T++ LD E    Y+L V A +          +V++ + D+NDN   F  L 
Sbjct: 2676 VNPNTGQVSTRRFLDREQRDSYSLVVEAVDKGSPTLTGTATVLITVEDKNDNPMQFRNL- 2734

Query: 73   YTGYVSEAAPIGALVL 88
            Y+  + E  PIG+ V+
Sbjct: 2735 YSTSILEDTPIGSFVI 2750



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 26   KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSEAAPI 83
            + LD E    + L+V A +    +   +  V +L  D NDNTP F Q +YT  ++E  P+
Sbjct: 2270 RTLDREDQSEFLLTVLAEDRGSPRLTGTGTVRVLVDDVNDNTPTFDQQSYTTTIAEDVPV 2329

Query: 84   GALVL 88
               VL
Sbjct: 2330 NTDVL 2334



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLN 72
            + P  G +     LDYE T  Y+L+++A +         VI  V + D NDN P F    
Sbjct: 3104 IDPRTGSVTVAAVLDYETTPTYHLNISARDRGLLYRENFVILTVDLTDVNDNDPMFDPAT 3163

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   + E +P G  V       +++ A D D+  NA +
Sbjct: 3164 YDPSIPENSPSGTSV-------VMVTATDADTGANAAI 3194



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYF 68
            K  ++P  G ++T   LD E   ++ + VTAT+ + A A     +V V + D +DN P F
Sbjct: 2360 KFEVNPATGQIITIGLLDRETQSLFTMVVTATDSSAADARSSSATVTVTVSDVDDNVPAF 2419

Query: 69   TQLNYTGYVSEAAPIGALV 87
               +   Y+ + AP G  V
Sbjct: 2420 VDRSIDAYLPDNAPTGTFV 2438



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G ++  + LD E    Y+L V   + A      + C V + +LD NDN P F+    T  
Sbjct: 1275 GQIMLAQLLDREVEDFYSLLVDVRDSASENPLSSQCRVNISVLDENDNEPVFSPTLQTAD 1334

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E+  +  L+ T       + A D D+ +N  +
Sbjct: 1335 VLESTRVNDLITT-------LTATDGDAGSNGEI 1361



 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 15/106 (14%)

Query: 15   LHPPYGVLLTKKPL----DYEAT---RIYNLSVTATNMAGA--KAVCSVIVHILDRNDNT 65
            L    G +LTK  L    D+  T     +   V AT+          +VI++I+D ND+ 
Sbjct: 2884 LDESSGAILTKNSLEFVPDWTGTTNPNHHQFVVIATDRGTPPLSGEVTVIINIIDANDHA 2943

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            P F +++Y   V E A IG +++       V+  +++D  +NA ++
Sbjct: 2944 PVFQEVSYFSPVPENAQIGEMIIQ------VLAVDNQDIGSNAEVE 2983


>gi|296192975|ref|XP_002744304.1| PREDICTED: protocadherin beta-4 isoform 1 [Callithrix jacchus]
          Length = 795

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  ILKP L   Y  L+T++PLD E    YN+++T T++     K   S+ V + 
Sbjct: 383 SIPDNLPFILKPTLKNFY-TLVTERPLDRETRDGYNITITVTDLGTPKLKTQQSLSVLVS 441

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ  YT +V E    A  IG+           + A D+DS  NA
Sbjct: 442 DVNDNAPAFTQTAYTLFVRENNSPALHIGS-----------VSATDRDSGANA 483



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +L KK LD+E  + Y++ + AT+  G     +V++ ++D NDN P     + T  + E
Sbjct: 298 GDILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVMDVNDNPPELIISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  + R  D+DS  N 
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGDNG 378



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  KPLD E    ++L++ A +        +V+V IL  D NDN P F    Y   
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIIDVNDNAPEFVHTPYRVQ 249

Query: 77  VSEAAPIGALVL 88
           V E +P+ + +L
Sbjct: 250 VLENSPLDSPIL 261



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 559


>gi|126290918|ref|XP_001377431.1| PREDICTED: protocadherin beta-2-like [Monodelphis domestica]
          Length = 795

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           K +D+EAT+ Y + + AT+  G    C+V++H++D NDN P  T  + T  + E +P   
Sbjct: 305 KTVDFEATQFYEIDIEATDGGGLSGKCTVVIHVIDLNDNLPKLTISSITNPIPENSP--- 361

Query: 86  LVLTNTSLPLVIRAEDKDSETNALL 110
                 ++  V R  D DS  N  +
Sbjct: 362 -----ETVVAVFRVSDLDSGENGRM 381



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 18/104 (17%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF 68
           LKP++   Y  L+T+  LD E    YN+++T  ++     K   ++ + I D NDN P F
Sbjct: 393 LKPSVEN-YYTLVTEGALDRERRAEYNITITVMDLGSPRLKTEHNITIWISDINDNPPVF 451

Query: 69  TQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           T   Y  Y+ E    A  IG+           + A D+DS  NA
Sbjct: 452 TLTAYKLYLQENNSPALHIGS-----------VSARDRDSGINA 484



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           + V I+D NDN P F + NY   
Sbjct: 191 YPELVLNKALDREELPEIRLTLTALDGGSPPRSGTAQIRVLIVDVNDNAPEFGRQNYEVR 250

Query: 77  VSEAAPIGALVL 88
           + E +P G+LV+
Sbjct: 251 IPENSPPGSLVV 262


>gi|26331274|dbj|BAC29367.1| unnamed protein product [Mus musculus]
          Length = 428

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
            LKP+    Y  LL++KPLD E+   YN+++T  +M     K   ++ V + D NDN P 
Sbjct: 19  FLKPSGENFY-TLLSQKPLDRESVAEYNITITVADMGSPILKTQVNLTVQVSDINDNAPI 77

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT ++ E    A  IG            I A D DS +NA
Sbjct: 78  FTQTSYTMFIRENNSPALHIG-----------TISATDSDSGSNA 111



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V + +LD NDN P+         
Sbjct: 138 GQLFVLRALDYEALQAFEFHVGATD-GGSPALSSQALVRMVVLDDNDNAPFVLYPMQNAS 196

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 197 APYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 229


>gi|4887715|gb|AAA79329.2| adherin [Drosophila melanogaster]
          Length = 3503

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +PLD E    Y L + A++    K+    C++ + + D+NDN P F    YTG V E
Sbjct: 1851 LSARPLDREQHSRYTLQIQASDRGQPKSRQGHCNITIFVEDQNDNAPRFKLSKYTGSVQE 1910

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+G  V+        I A D D   NA L
Sbjct: 1911 DAPLGTSVVQ-------ISAVDADLGVNARL 1934



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
             + P  G +  + PLD E    Y L++ AT+     A A   VIV +LD NDN P F + 
Sbjct: 1044 GIFPNSGWIYLRAPLDRETRDRYQLTILATDNGTPAAHAKTRVIVRVLDANDNDPKFQKS 1103

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   + E    G++V        V+ A D D   NA +
Sbjct: 1104 KYEFRIEENLRRGSVV-------GVVTASDLDLGENAAI 1135



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  GV+ T+  LD+E   IY L V A++      + V  + V +LD NDN P FT  
Sbjct: 1256 SIDPTSGVIRTRVVLDHEERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSS 1315

Query: 72   NYTGYVSEAAPIGALV 87
            +    V E A +G +V
Sbjct: 1316 SLVFRVREDAALGHVV 1331



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 16/107 (14%)

Query: 7    LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRND 63
            LFAI   + H     L+  + LDYE+++ + L VTAT+  G  ++ +   ++V + D ND
Sbjct: 925  LFAIDARSGH-----LILSQHLDYESSQRHTLIVTATD-GGVPSLSTNLTILVDVQDVND 978

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            N P F +  Y+  VSE+  I A ++        + A D D+  NA +
Sbjct: 979  NPPVFEKDEYSVNVSESRSINAQIIQ-------VNASDLDTGNNARI 1018



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 33/126 (26%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY------ 73
            G++ +    DYE  + Y++ + A++M G KA  +V V I  R++ TP FT+  Y      
Sbjct: 2868 GLVTSAFVFDYEQRQRYDMELLASDMGGKKASVAVRVEIESRDEFTPQFTERTYRFVLPA 2927

Query: 74   -----TGYV--------SEAAPIGALV-----------LTNTSLPLVIRAE---DKDSET 106
                  GYV        S++ P G +V           +  +S  ++I+ +   D D + 
Sbjct: 2928 AVALPQGYVVGQVTATDSDSGPDGRVVYQLSAPHSHFKVNRSSGAVLIKRKLKLDGDGDG 2987

Query: 107  NALLDG 112
            N  +DG
Sbjct: 2988 NLYMDG 2993



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G++ T+  +D E   +  L+V A +  +    +  +V+V I D NDN P F Q  
Sbjct: 503 IDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSF 562

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Y   V+E  P+G  +L        + A D D   NA+++
Sbjct: 563 YNVSVAENEPVGRCILK-------VSASDPDCGVNAMVN 594



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 18/102 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L  + PLD+EA + Y L V A + +       +   +V + ILD ND+ P+F   N +
Sbjct: 1496 GALSLQAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDHAPHFVSPNSS 1555

Query: 75   G------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G      ++S+A  IG +V         I A D+DS  N  L
Sbjct: 1556 GGKTASLFISDATRIGEVVAH-------IVAVDEDSGDNGQL 1590



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT--Q 70
            +HP  G + T++PLD E   +Y+L V A +       A   V +H+ D NDN P     Q
Sbjct: 1148 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1207

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V E  P G  V+        +RA D+D   NA
Sbjct: 1208 EDVVS-VREEQPPGTEVVR-------VRAVDRDHGQNA 1237



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            GVL     LDY++  + Y L + A +    + +CS+    + + D NDN P F    Y  
Sbjct: 2757 GVLFVNNRLDYDSGAKSYELIIRACDSHHQRPLCSLQPFRLELHDENDNEPKFPLTEYVH 2816

Query: 76   YVSEAAPIGALVL 88
            +++E  P+G+ V 
Sbjct: 2817 FLAENEPVGSSVF 2829



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 27  PLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           PLD E    Y LSV AT+       A  S+ + I D NDN P F Q  Y   V E A  G
Sbjct: 408 PLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANVMEVADPG 467

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + A D+D   N+ L
Sbjct: 468 TSVLQ-------VLAHDRDEGLNSAL 486



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP---------YFTQ 70
            G L+ K+ LDYE  + Y L V A++ A  +A   + V + D NDN P         YF  
Sbjct: 2432 GKLVLKRRLDYELQQEYELDVIASD-AAHEARTVLTVRVNDENDNAPVFLAQQPPAYFAI 2490

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            L     +SE+  +   +LT       + A D DSE N
Sbjct: 2491 LPAISEISESLSVDFDLLT-------VNATDADSEGN 2520



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            +++PA     G++ T   LD E   IY L + AT+    +     ++ V I+D NDN P 
Sbjct: 2318 VIEPAFS---GIVRTNIVLDREIRDIYKLKIIATDEGVPQMTGTATIRVQIVDVNDNQPT 2374

Query: 68   FTQLNYTGYVSEAAPIGALVLT 89
            F   N    VSEA  +GA++ +
Sbjct: 2375 FPPNNLV-TVSEATELGAVITS 2395



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E T  Y+L + A +      +   +V + I D NDN P F Q  Y   V E A +G 
Sbjct: 191 LDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGT 250

Query: 86  LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            VL        + A D D++ N L++ + N
Sbjct: 251 SVLQ-------VYASDTDADENGLVEYAIN 273



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L+  + LD E    + L +     TA+N   + A+ +V + + D NDN P + Q    
Sbjct: 1380 GNLVVARLLDREVQSEFRLEIRALDTTASNNPQSSAI-TVKIEVADVNDNAPEWPQDPID 1438

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSEA P+G ++   T       A D D+ TN  L
Sbjct: 1439 LQVSEATPVGTIIHNFT-------ATDADTGTNGDL 1467



 Score = 35.4 bits (80), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++ T   LD E    YN  V AT+    +   A   V +++LD NDN P F +  Y G 
Sbjct: 1953 GLITTVGKLDRELQASYNFMVLATDGGRYEVRSATVPVQINVLDINDNRPIFERYPYIGQ 2012

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V       AL+    +L L ++A D D   NA
Sbjct: 2013 VP------ALIQPGQTL-LKVQAIDADLGANA 2037



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 6    QLFAILKPALHPPYGVLLTK-----KPLDYEATRIYNLSVTATNMAG--------AKAVC 52
            Q  AI+       + +L +K     KPLD E   +Y L +  ++  G        + +  
Sbjct: 2624 QSLAIIAGNEESAFELLQSKAIVLVKPLDRERNDLYKLRLVLSHPHGPPLISSLNSSSGI 2683

Query: 53   SVIVHILDRNDNTPYFTQ-LNYTGYVSEAAPI 83
            SVI+ ILD NDN P F +   Y   +SE AP+
Sbjct: 2684 SVIITILDANDNFPIFDRSAKYEAEISELAPL 2715


>gi|301620403|ref|XP_002939565.1| PREDICTED: cadherin-23-like [Xenopus (Silurana) tropicalis]
          Length = 2570

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L    GV+     LDYE T+ Y L+V A +  G +    V +++LD NDN P F + +Y
Sbjct: 26  SLDKDTGVITVITRLDYETTQRYTLTVIARDGGGEETTGRVRINVLDVNDNMPIFQKESY 85

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            G + E  P    V+        +RA D+DS  N
Sbjct: 86  LGAIRENEPSVVTVVK-------LRATDEDSAPN 112



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + +DYE  +  N +V A++    +  A   V + I+D NDN P F+Q +Y   V
Sbjct: 1828 GKIIANRTVDYEQVQWLNFTVRASDNGSPRRSAEVPVYLQIVDINDNNPIFSQSSYQKPV 1887

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E   +GA VL        I+A D DS   AL+
Sbjct: 1888 FEDIQLGATVLQ-------IKATDADSGRFALI 1913



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 8/81 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS------VIVHILDRNDNTPY 67
           ++   YGV+   +PLDYE  +I N  ++ T MA    V S      V + + D NDN P 
Sbjct: 132 SISEGYGVITVTRPLDYE--QISNGVISLTVMAKDSGVPSLNSTVPVSIEVFDENDNPPT 189

Query: 68  FTQLNYTGYVSEAAPIGALVL 88
           F++ +Y   V E    GA VL
Sbjct: 190 FSRSSYVITVMENIIAGATVL 210



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT----NMAGAKAVCSV-IVHILDRNDNTPYFTQLNYT 74
            G++   + LD E    Y L++T      N   ++    V IV I D NDN P FTQ +Y 
Sbjct: 1382 GIVYVNRQLDREKISEYKLTITVKDNPENARNSRRDFDVLIVTISDENDNRPLFTQGSYL 1441

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              ++E +P G  +   T L   + A D D  +NA++
Sbjct: 1442 AELTENSPEGTPI---TVLNGPVLALDNDIGSNAVV 1474



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 26  KPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY-VSEAAP 82
           +PLD E    + L V A N      ++   VI+++ D ND  P FTQ  Y+   + E   
Sbjct: 632 QPLDRETNSSHVLVVEAYNSDQGPMRSSVRVIIYVEDVNDEVPVFTQQQYSRLGLRETVG 691

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNALL 110
           IG  V        V+RA D+D+    L+
Sbjct: 692 IGTSV-------TVVRATDRDTGDGGLV 712



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM--AGAK--AVCSVIVHILDRNDNTPYFTQLNYTG 75
           G+L T   LD E    Y L + A +   AG +     +V V +LD NDN P F + +Y  
Sbjct: 518 GILRTVVNLDRETVASYTLVLEAIDNGPAGNRKTGTATVSVTVLDINDNKPIFLKSSYEA 577

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E  P  + ++        + A D D   N L+
Sbjct: 578 SVPENVPFSSSIVQ-------LEATDADEGDNGLV 605


>gi|432961282|ref|XP_004086589.1| PREDICTED: protocadherin Fat 4-like [Oryzias latipes]
          Length = 4971

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQL 71
            ++H   G + T +PLD E   +Y+L V AT+        S  V+V +LD NDN P F+++
Sbjct: 2694 SIHRATGEIRTNRPLDREKVALYSLKVKATDRGSPPKSTSVKVLVRVLDVNDNAPRFSKI 2753

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
             ++  V+E AP+G  V   T+        D+D+ +NA+
Sbjct: 2754 -FSATVAENAPVGYTVTRVTTT-------DEDAGSNAI 2783



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  R Y L+  A +  G  +   V  ++LD NDN P F+   Y+
Sbjct: 1870 LNPVTGVFNVTRALDYETQRYYILTAKAHDGGGLASTVRVYFNVLDINDNPPVFSSSAYS 1929

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSE+ P G+ ++T       + A D D   NA L
Sbjct: 1930 TSVSESLPPGSSIVT-------VEASDGDDGANAQL 1958



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 9/100 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LDYE    Y L++TA +        S  V+V++ D NDN P F   
Sbjct: 1340 SISPNTGSIFLVKKLDYETQSFYKLNITAKDNGRPARSSSIPVVVYVRDFNDNPPVFAPG 1399

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +    + E  P+ A VLT       I A D D++ N  L+
Sbjct: 1400 DIFKSIPENLPVSASVLT-------ITAHDTDADINGQLE 1432



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T+  LDYEA ++Y+L+V A N+      +  +V + +   N+  P F    
Sbjct: 3220 IDPNTGIITTQGFLDYEAKQVYHLTVKAFNIPDEDRCSFANVNIQLKGANEYVPRFVSKQ 3279

Query: 73   YTGYVSEAAPIGALV 87
            Y   VSEAAP G +V
Sbjct: 3280 YYFEVSEAAPKGTVV 3294



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL T+K LD E+   YNL +T  ++A   A        V + +LD ND  P FT    T
Sbjct: 1977 GVLQTQKALDRESQSFYNLVITVNDLAPPPAARFTSTAQVSIILLDVNDCPPIFTSQKTT 2036

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  P+  +V T        +A D DS  N+ ++
Sbjct: 2037 -YIQENTPVDTVVFT-------AQATDADSGPNSYVE 2065



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            L+   GVL    PLD+E  + + L V+A +       +  SV + + D NDN P F    
Sbjct: 3116 LNSKTGVLSLANPLDFEEKQQHELRVSAIDGGWIAKTSYVSVTIQVTDVNDNPPIFDPDE 3175

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   V E  P G  V+        + A D+DS  NA++
Sbjct: 3176 YFPTVQENVPSGTTVVR-------MNATDRDSGPNAVM 3206



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTG 75
            P G L  K  LD E    YNL V A + A      SV V ++  D NDN P F   NY  
Sbjct: 1024 PDGQLYIKAELDREVQDRYNLVVVAKDRAVEPLSASVNVTVILDDVNDNRPLFNSTNYVF 1083

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            +  E    G+LV         + AEDKD
Sbjct: 1084 HFKEEQQRGSLVGQ-------VFAEDKD 1104



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILD 60
            +P  LF I     H  +G++     L   +T  Y + VTA++M   +   S+  I+ + D
Sbjct: 911  NPKGLFHI-----HEKHGLITLTGSLK-ASTNSYEVEVTASDMGVPQRTSSLSLIISVYD 964

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   + E+ P+ +           + A DKDS  N 
Sbjct: 965  VNDNSPMFDQLSYEVIILESEPVNSRFFK-------VEATDKDSGLNG 1005



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYE++  Y L + A +       + C + + ILD NDN+P F + + +  V E   IG 
Sbjct: 1249 LDYESSSSYLLKIIADDAGDVPLSSSCMLSISILDENDNSPSFPKSSLSVDVLENMRIGD 1308

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
            LV++       + A D DS  NA
Sbjct: 1309 LVVS-------VTATDADSGQNA 1324



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +++P  G +   +PL+ E T  Y + V+A + +G      V + I D NDN P FT+ +Y
Sbjct: 2796 SINPNTGDITINRPLNREETDHYIVKVSAHD-SGWTVSTDVTIFITDVNDNVPRFTRPSY 2854

Query: 74   TGYVSEAAPIGALV 87
                 E   IG+LV
Sbjct: 2855 YLEYPELTEIGSLV 2868



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G ++ K+ LD+E+ + Y+L++ A +             + +LD NDN P     Y
Sbjct: 282 IDPKTGTIVIKESLDFESKKEYSLTIHAADKGVPSLSGRTETTIKLLDVNDNDPVVKFRY 341

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A IG +V
Sbjct: 342 FPTTSKFASVDENAQIGTVV 361



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G L+  K LD E    Y+L V A +   +  +  + + + D ND+TP F++  Y+
Sbjct: 1768 IDPESGDLIATKKLDRERRSKYSLLVRADDGKQSSDM-RLNITVKDVNDHTPKFSRPTYS 1826

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E    G++V        VI A D DSE N 
Sbjct: 1827 FDIPEDVTPGSIV-------EVILASDSDSELNG 1853



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   K LD E    Y L +TAT+ +G+ A+    +V V + D NDN P F+   +   
Sbjct: 2293 GQLSVTKTLDREFGAEYTLLITATD-SGSPALSGTGTVTVLVDDVNDNVPVFSSSTFHTT 2351

Query: 77   VSEAAPIGALVL 88
            ++E AP G  VL
Sbjct: 2352 IAEDAPTGTDVL 2363



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L++   LD E T  Y L +   +    K      V V I D NDN P F Q  Y   V E
Sbjct: 187 LVSTGGLDRELTPFYQLLIEVEDKGVPKKFGYLQVNVTIQDINDNPPVFEQDQYHSSVFE 246

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A +G+ +L        I A D+D   NA
Sbjct: 247 DAAVGSSILQ-------ITASDQDEGANA 268



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           +H   G + T   LD E    Y L V AT+  G  +     V V + D  DN P F+Q N
Sbjct: 715 IHSNTGKITTLVALDREEKTAYQLQVRATDGGGLSSHTHAFVTVTVTDTQDNPPVFSQEN 774

Query: 73  YTGYVSEAAPIGALVLT 89
           Y+  + E    G ++ T
Sbjct: 775 YSFVMFENVSPGTVIGT 791



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 9/82 (10%)

Query: 31   EATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVL 88
            E  +I+ ++VTA +       A  +V + + + N +TP F+Q   +  V E+  +G  + 
Sbjct: 3027 EVNKIFLMNVTAKDKGNPPLSANTAVRIAVTEENHHTPEFSQSQISATVPESLAVGTAIR 3086

Query: 89   TNTSLPLVIRAEDKDSETNALL 110
            T       + A+DKD E N L+
Sbjct: 3087 T-------VSAKDKDKEMNGLI 3101



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT 69
            ++P  G +     LD E T +YNL+V A +     A  + +VIV++ D NDN P  T
Sbjct: 3432 INPKTGQVSVAAELDRETTPVYNLTVLAVDTGTPPATGIATVIVNLEDINDNGPTLT 3488



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYF 68
             + P  G++ T K +D E + ++ L+V AT+ A        A+ +V + + D NDN P F
Sbjct: 1446 GIDPSSGLIYTSKEIDREFSNLFELTVKATDQAVPVEFRRFALKNVTIWVTDLNDNFPTF 1505

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
               N    V+E   +   +LT       + A D D E N  ++
Sbjct: 1506 VSQN--ALVAEPNIVIGSILT------TLVAFDPDDEANGEVE 1540



 Score = 35.0 bits (79), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVS 78
            +++   LD E    Y L V AT+    K + S   V V + D NDN P F    Y  ++ 
Sbjct: 2394 IISSALLDREERANYQLLVVATDGGQPKGLSSSATVSVTVADINDNPPRFHHHPYVTHIP 2453

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +   GALV         +   D+D+ +NA L
Sbjct: 2454 ASTAAGALV-------FAVTVTDEDAGSNAQL 2478


>gi|25090185|sp|Q24292.3|DS_DROME RecName: Full=Protein dachsous; AltName: Full=Adherin; Flags:
            Precursor
          Length = 3503

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +PLD E    Y L + A++    K+    C++ + + D+NDN P F    YTG V E
Sbjct: 1851 LSARPLDREQHSRYTLQIQASDRGQPKSRQGHCNITIFVEDQNDNAPRFKLSKYTGSVQE 1910

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             AP+G  V+        I A D D   NA L
Sbjct: 1911 DAPLGTSVVQ-------ISAVDADLGVNARL 1934



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
             + P  G +  + PLD E    Y L+V AT+     A A   VIV +LD NDN P F + 
Sbjct: 1044 GIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKS 1103

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   + E    G++V        V+ A D D   NA +
Sbjct: 1104 KYEFRIEENLRRGSVV-------GVVTASDLDLGENAAI 1135



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  GV+ T+  LD+E   IY L V A++      + V  + V +LD NDN P FT  
Sbjct: 1256 SIDPTSGVIRTRVVLDHEERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSS 1315

Query: 72   NYTGYVSEAAPIGALV 87
            +    V E A +G +V
Sbjct: 1316 SLVFRVREDAALGHVV 1331



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 16/107 (14%)

Query: 7    LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRND 63
            LFAI   + H     L+  + LDYE+++ + L VTAT+  G  ++ +   ++V + D ND
Sbjct: 925  LFAIDARSGH-----LILSQHLDYESSQRHTLIVTATD-GGVPSLSTNLTILVDVQDVND 978

Query: 64   NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            N P F +  Y+  VSE+  I A ++        + A D D+  NA +
Sbjct: 979  NPPVFEKDEYSVNVSESRSINAQIIQ-------VNASDLDTGNNARI 1018



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 33/126 (26%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY------ 73
            G++ +    DYE  + Y++ + A++M G KA  +V V I  R++ TP FT+  Y      
Sbjct: 2868 GLVTSAFVFDYEQRQRYDMELLASDMGGKKASVAVRVEIESRDEFTPQFTERTYRFVLPA 2927

Query: 74   -----TGYV--------SEAAPIGALV-----------LTNTSLPLVIRAE---DKDSET 106
                  GYV        S++ P G +V           +  +S  ++I+ +   D D + 
Sbjct: 2928 AVALPQGYVVGQVTATDSDSGPDGRVVYQLSAPHSHFKVNRSSGAVLIKRKLKLDGDGDG 2987

Query: 107  NALLDG 112
            N  +DG
Sbjct: 2988 NLYMDG 2993



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G++ T+  +D E   +  L+V A +  +    +  +V+V I D NDN P F Q  
Sbjct: 503 IDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSF 562

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Y   V+E  P+G  +L        + A D D   NA+++
Sbjct: 563 YNVSVAENEPVGRCILK-------VSASDPDCGVNAMVN 594



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 18/102 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L  + PLD+EA + Y L V A + +       +   +V + ILD ND+ P+F   N +
Sbjct: 1496 GALSLQAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDHAPHFVSPNSS 1555

Query: 75   G------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G      ++S+A  IG +V         I A D+DS  N  L
Sbjct: 1556 GGKTASLFISDATRIGEVVAH-------IVAVDEDSGDNGQL 1590



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT--Q 70
            +HP  G + T++PLD E   +Y+L V A +       A   V +H+ D NDN P     Q
Sbjct: 1148 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1207

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +    V E  P G  V+        +RA D+D   NA
Sbjct: 1208 EDVVS-VREEQPPGTEVVR-------VRAVDRDHGQNA 1237



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 20   GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            GVL     LDY++  + Y L + A +    + +CS+    + + D NDN P F    Y  
Sbjct: 2757 GVLFVNNRLDYDSGAKSYELIIRACDSHHQRPLCSLQPFRLELHDENDNEPKFPLTEYVH 2816

Query: 76   YVSEAAPIGALVL 88
            +++E  P+G+ V 
Sbjct: 2817 FLAENEPVGSSVF 2829



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 27  PLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           PLD E    Y LSV AT+       A  S+ + I D NDN P F Q  Y   V E A  G
Sbjct: 408 PLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANVMEVADPG 467

Query: 85  ALVLTNTSLPLVIRAEDKDSETNALL 110
             VL        + A D+D   N+ L
Sbjct: 468 TSVLQ-------VLAHDRDEGLNSAL 486



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 17/97 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP---------YFTQ 70
            G L+ K+ LDYE  + Y L V A++ A  +A   + V + D NDN P         YF  
Sbjct: 2432 GKLVLKRRLDYELQQEYELDVIASD-AAHEARTVLTVRVNDENDNAPVFLAQQPPAYFAI 2490

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            L     +SE+  +   +LT       + A D DSE N
Sbjct: 2491 LPAISEISESLSVDFDLLT-------VNATDADSEGN 2520



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
            +++PA     G++ T   LD E   IY L + AT+    +     ++ V I+D NDN P 
Sbjct: 2318 VIEPAFS---GIVRTNIVLDREIRDIYKLKIIATDEGVPQMTGTATIRVQIVDVNDNQPT 2374

Query: 68   FTQLNYTGYVSEAAPIGALVLT 89
            F   N    VSEA  +GA++ +
Sbjct: 2375 FPPNNLV-TVSEATELGAVITS 2395



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E T  Y+L + A +      +   +V + I D NDN P F Q  Y   V E A +G 
Sbjct: 191 LDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGT 250

Query: 86  LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            VL        + A D D++ N L++ + N
Sbjct: 251 SVLQ-------VYASDTDADENGLVEYAIN 273



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            G L+  + LD E    + L +     TA+N   + A+ +V + + D NDN P + Q    
Sbjct: 1380 GNLVVARLLDREVQSEFRLEIRALDTTASNNPQSSAI-TVKIEVADVNDNAPEWPQDPID 1438

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              VSEA P+G ++   T       A D D+ TN  L
Sbjct: 1439 LQVSEATPVGTIIHNFT-------ATDADTGTNGDL 1467



 Score = 35.4 bits (80), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++ T   LD E    YN  V AT+    +   A   V +++LD NDN P F +  Y G 
Sbjct: 1953 GLITTVGKLDRELQASYNFMVLATDGGRYEVRSATVPVQINVLDINDNRPIFERYPYIGQ 2012

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V       AL+    +L L ++A D D   NA
Sbjct: 2013 VP------ALIQPGQTL-LKVQALDADLGANA 2037



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)

Query: 6    QLFAILKPALHPPYGVLLTK-----KPLDYEATRIYNLSVTATNMAG--------AKAVC 52
            Q  AI+       + +L +K     KPLD E   +Y L +  ++  G        + +  
Sbjct: 2624 QSLAIIAGNEESAFELLQSKAIVLVKPLDRERNDLYKLRLVLSHPHGPPLISSLNSSSGI 2683

Query: 53   SVIVHILDRNDNTPYFTQ-LNYTGYVSEAAPI 83
            SVI+ ILD NDN P F +   Y   +SE AP+
Sbjct: 2684 SVIITILDANDNFPIFDRSAKYEAEISELAPL 2715


>gi|297295304|ref|XP_001092006.2| PREDICTED: putative protocadherin beta-18 [Macaca mulatta]
          Length = 734

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 18/107 (16%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 339 VLKPTFKNFYS-LVTEHPLDREIRNEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 397

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           FTQ +YT +V E    A  IG+           + A D+DS TNAL+
Sbjct: 398 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNALV 433



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +HP  G +  K PLD+E  + Y +++ A +        +++V ++D NDN P     + T
Sbjct: 240 IHPIAGEVYLKAPLDFEIIQSYIINIQAIDSGSLSGESNILVRVVDVNDNPPEIAMTSLT 299

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E +    +V        V    D+DS  N  +
Sbjct: 300 SPIPENSSPEMVV-------AVFSIRDQDSGDNGRM 328



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E     +L++TA +        + ++++  LD NDN P F +  Y  +
Sbjct: 137 YPELVLDQSLDREKESELSLTLTAVDGGSPPRSGTTLINVVVLDVNDNAPEFEKPVYEVH 196

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E++P+ +L++        + A D D+  N  L
Sbjct: 197 VPESSPLDSLIIK-------VSATDLDAGINGEL 223


>gi|348583115|ref|XP_003477320.1| PREDICTED: protocadherin gamma-C5-like [Cavia porcellus]
          Length = 944

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EA   Y L + A++ AG+  +    ++ V+I D NDN P FTQ  YT Y+ 
Sbjct: 406 LLTSRPLDREAMPHYVLELLASD-AGSPPLHTRLTIRVNISDVNDNAPLFTQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDAGDNARL 489



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V I D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPVDFEESDFYEIHAKARDQGQPAMEGHCVIQVDIGDANDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E  P+G +V        +I   D+DS  N 
Sbjct: 354 SLVNPVPENIPVGTVV-------GLINVRDRDSGRNG 383



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD E    + L +TA +    A++  S+I + +LD NDN P F        + E
Sbjct: 194 LVLEQQLDRETQAKHQLVLTAMDGGTPARSGTSLISIIVLDINDNAPTFQSSALRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            APIG L+L        + A D D  TN  LD
Sbjct: 254 NAPIGTLLLR-------LNATDPDEGTNGQLD 278


>gi|351696444|gb|EHA99362.1| Protocadherin gamma-A1 [Heterocephalus glaber]
          Length = 783

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G +  K+PLD+E  RIY + + A + AG  A   V++ +LD NDN P  +    T
Sbjct: 267 LDPYTGEISNKEPLDFEVYRIYPMEIQAQDGAGLMARTKVLIKVLDVNDNAPEVSITCVT 326

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
             V E  P G ++        +I   D+DS  N  
Sbjct: 327 TAVPENFPPGTII-------ALISVHDQDSGDNGF 354



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E T  YN++VTAT+           + +L  D NDN+P F Q +Y+ Y
Sbjct: 374 YYHLVTERTLDRELTSKYNITVTATDRGTPMLSTQTYIPLLVTDVNDNSPVFHQDSYSVY 433

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA + +       + A+D DS  NA
Sbjct: 434 IPENNPRGASIFS-------VSAQDADSSENA 458



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI----LDRNDNTPYFTQLNYTGYV 77
           ++ ++ LD E   +++L +TA++  G   V S  +HI    +D NDN P FTQ  Y   V
Sbjct: 167 MVLQRLLDREEEAVHHLVLTASD--GGNPVRSGTLHIRVQVVDANDNPPAFTQPEYHKSV 224

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P+G  +       L++ A D D   N 
Sbjct: 225 PENVPLGTRL-------LMVSATDPDEGANG 248


>gi|441596417|ref|XP_004092933.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin beta-7 [Nomascus
           leucogenys]
          Length = 795

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     + T
Sbjct: 294 INPTSGNLHLKAELDYEAIQTYTLTIQAKDGGGLSGKCTVVVEVTDINDNRPQLLLSSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E +P         ++  V R  D+DS  N 
Sbjct: 354 SPVEENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+ +KPLD E    Y++++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVENFY-TLVAEKPLDRERNTEYHITITVTDLGTPRLKTEYNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E    ++L++TA +        + +V IL  D NDN P F +  Y   
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDINDNAPDFVRSLYKVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+G++V++       + A D D+ +N 
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFHVGATDR-GSPALSSEALVRVRVLDANDNSPF 560


>gi|76879890|dbj|BAE45762.1| putative protein product of Nbla00548 [Homo sapiens]
          Length = 656

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 430 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 489

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 490 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 521



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
          G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 15 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 73

Query: 78 SEAAPIGALV 87
           E +P+G  V
Sbjct: 74 PENSPLGYTV 83



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 535 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 594

Query: 73  YTGYVSEAAPIGALV 87
           Y   +SEAAP G +V
Sbjct: 595 YYFEISEAAPKGTIV 609



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 9   AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
           A L   ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F
Sbjct: 106 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 164

Query: 69  TQLNYTGYVSEAAPIGALV 87
           ++ +Y     E   IG+ V
Sbjct: 165 SRTSYYLDCPELTEIGSKV 183


>gi|321476878|gb|EFX87838.1| hypothetical protein DAPPUDRAFT_311854 [Daphnia pulex]
          Length = 3133

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 14/96 (14%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN-MAG------AKAVCSVIVHILDRNDNTPYFTQLN 72
           G + T   LD E+  ++ L VTAT  MAG        A  +V +++ DRND  P F Q +
Sbjct: 356 GSITTSARLDRESMDVHYLRVTATEVMAGDGRSQPRSATATVQINVEDRNDFAPTFEQPS 415

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   + E+A IG  VLT       +RA+D+D+  NA
Sbjct: 416 YETSIKESASIGTAVLT-------VRAKDQDAGANA 444



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+V A++  G     +V +++ D N + P F    Y+  V E
Sbjct: 784 GLISVAQPLDYKQEKRFVLTVQASDSGGRSDTATVYLNVSDANTHAPAFEAAPYSATVFE 843

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            APIG  V       L++ A D D   NA
Sbjct: 844 DAPIGTTV-------LIVAASDGDVGDNA 865



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 48/109 (44%), Gaps = 14/109 (12%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           ++ P  G ++T K LD E T  Y L++TA +           V + + D NDN P F Q 
Sbjct: 880 SIQPATGAIITTKQLDRERTSGYLLTITARDNGNPPLSDTTDVEISLGDVNDNLPVFQQT 939

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDGSTN 115
            YT  V E A IG  VL  T       A D D   N      LLD  TN
Sbjct: 940 MYTANVPEDALIGTSVLQVT-------ATDADQGFNGRVRYVLLDADTN 981



 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/79 (35%), Positives = 38/79 (48%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            + P  G ++T + LD E    +   V AT+  G  A   V++ I D+NDN P F    Y
Sbjct: 675 GIDPDTGWIVTVRDLDREENHHHEFEVLATDGGGKTATARVVLQIQDQNDNDPVFWPKVY 734

Query: 74  TGYVSEAAPIGALVLTNTS 92
              V E A  G  VLT T+
Sbjct: 735 DAIVGEDATPGTPVLTVTA 753



 Score = 42.0 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
           GV+ T+  LD E    YNL++ A +    +    A   V V + D NDN P F++  YT 
Sbjct: 467 GVISTRLALDRETNGQYNLTIQAVDQGPVQERQSATAMVHVQVGDENDNYPQFSERTYTV 526

Query: 76  YVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNALL 110
            V+E        +     P+V  IRA D D   NA+L
Sbjct: 527 DVAEN-------VNWAENPIVARIRATDADVGPNAVL 556



 Score = 35.0 bits (79), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           +PLD+E  R Y L + A +           ++V++ D NDN P F    +   V E  P+
Sbjct: 582 QPLDFETVRSYRLVIRAQDGGNPSRSNTTQLLVNVRDVNDNAPRFYTSLFQESVIENVPV 641

Query: 84  G 84
           G
Sbjct: 642 G 642


>gi|449475308|ref|XP_004175477.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-A3-like
           [Taeniopygia guttata]
          Length = 821

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  ++ LD+E TR Y L V A +  G  A C V + +LD NDN P  T L+ +  + E
Sbjct: 308 GTITLQEELDFEDTRGYTLLVEARDGGGLVAHCKVELEVLDVNDNAPEITVLSLSNPLPE 367

Query: 80  AAPIGALV 87
            AP+GA+V
Sbjct: 368 DAPVGAVV 375



 Score = 46.6 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTG 75
           Y  ++T + LD E    YN++V A +  G+ A+ S  V    +LD NDN P F +  Y+ 
Sbjct: 410 YYSVVTARELDREQVSEYNVTVRAAD-GGSPALQSSAVLALRVLDVNDNAPVFAEERYSA 468

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +SE    GALVL        +RA D D   NA
Sbjct: 469 RLSENNAAGALVLR-------VRATDADWGQNA 494



 Score = 37.0 bits (84), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +  L+ ++ LD E+     L +TA +           + +++ D NDN P F Q  Y   
Sbjct: 200 FAELVLRRALDRESEPSLRLLLTALDGGDPPRTGTAQLWINVTDANDNPPVFAQDRYRVS 259

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P G+ VL        I A D D+ TNA
Sbjct: 260 LREDTPPGSTVLN-------ISASDADAGTNA 284


>gi|355691692|gb|EHH26877.1| hypothetical protein EGK_16956 [Macaca mulatta]
          Length = 944

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+F Q  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYTIELLASD-AGSPPLHKHLTIRLNISDVNDNAPHFNQQLYTAYIL 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNARL 489



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 13/98 (13%)

Query: 18  PYGVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYFTQLNY 73
           P+  L+ ++ LD EA   + L +TA +          + SVIV  LD NDN P F     
Sbjct: 190 PFPELVLEQQLDREAQTRHQLVLTAVDGGTPAHSGTTLISVIV--LDINDNAPTFQSSVL 247

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
              + E APIG L+L        + A D D  TN  LD
Sbjct: 248 RVGIPENAPIGTLLLR-------LNATDPDEGTNGQLD 278



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLANPVLESTPVGTVV-------GLFNVRDRDSGRNG 383


>gi|327281345|ref|XP_003225409.1| PREDICTED: neural-cadherin-like [Anolis carolinensis]
          Length = 2607

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDR 61
           P++ +  L P        LL  +PLDYE T+ + L + A N+A     +  +V +++ D 
Sbjct: 725 PIRFY--LTPNRDDGSASLLIAEPLDYETTKHFLLRIRAQNVAAVPLASFATVYINVTDV 782

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
           NDN P+FT   Y   V+E A +G +V   ++  L
Sbjct: 783 NDNVPFFTSSIYEASVTEGADVGTMVFQVSATDL 816



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           + P  GVL T +  D E  R + ++VTAT+ A      +C + V ILD NDN P F   +
Sbjct: 522 IDPDTGVLTTLQIFDREKQREHPITVTATDQAAEPLIGICQITVVILDVNDNNPRFENSH 581

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E   +G      TS  L + A D D  +NA
Sbjct: 582 YEYFLREDTDVG------TSF-LRVAAHDDDYGSNA 610



 Score = 43.5 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   +PLDYE T++Y L + A++    +    VI++I+++ND  P F    Y 
Sbjct: 954  VEPEMGAIFIARPLDYEETQLYELHLLASD-GKWEDYAIVIINIVNKNDEAPVFALNEYY 1012

Query: 75   GYVSE 79
            G V E
Sbjct: 1013 GSVIE 1017



 Score = 42.4 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   K LD EAT+ Y L V A++  +       ++++ +LD NDN P F + +Y   V
Sbjct: 1390 GHVTVSKSLDREATQAYGLIVQASDQGVPAQTGSVTILIDLLDINDNGPRF-EASYMPVV 1448

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E  P   LV  NT+  L I A D DS+ N 
Sbjct: 1449 WENTPGPQLVDMNTTSNL-IWAFDPDSDENG 1478



 Score = 38.1 bits (87), Expect = 0.71,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL--NYTG 75
            G + ++K LD E   ++   V AT+  G        VI++I D NDN P F  +  N  G
Sbjct: 1063 GSIYSQKILDREERALWRFVVLATDEGGEGLTGFADVIINIWDINDNAPVFPCMPSNCNG 1122

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E +P    ++  T++ L    +D +   NA+L
Sbjct: 1123 TVFENSPEDTFIMEMTAVDL----DDTNVGLNAIL 1153



 Score = 35.8 bits (81), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 15   LHPPYG-VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++P  G + +T   LD E    Y L++ A +  G     +  + + D ND+ P FTQ  +
Sbjct: 1172 INPSTGNIYVTGGMLDRETADKYFLTIEAKDGGGLTGTGTATIWVADVNDHIPSFTQEIW 1231

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               + EA+ + + VL        I A D DS  NALL
Sbjct: 1232 HVVIPEASTVNSEVLE-------ISAVDGDSGENALL 1261



 Score = 34.3 bits (77), Expect = 9.1,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 17/101 (16%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----------VCSVIVHILDRNDNTPYFT 69
           G + T    D E    Y L V +T+ + +               V V I D NDN P FT
Sbjct: 846 GSIYTASVFDREKKASYLLEVKSTDGSESSRPGKHGQPNSDTAYVRVFISDVNDNKPSFT 905

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +  Y   V E   +G+ V+T       + A D+D  TNA L
Sbjct: 906 KNVYEVNVDEDQDVGSTVIT-------VSANDEDEGTNAKL 939


>gi|269914102|ref|NP_001013032.2| protocadherin beta-5 precursor [Pan troglodytes]
          Length = 795

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  L+T++ LD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 391 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 450 FTQTSYTLFVRENNSPALQIGS-----------VSATDRDSGTNA 483



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T    +  + E
Sbjct: 298 GEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAMEVVDVNDNAPELTMSTLSSPIPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPETVVAVFSVSDP 372



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       ++ + +LD NDN P F Q  Y  
Sbjct: 191 YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSLYEV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E +PI +LV       +V+ A D D+
Sbjct: 250 QVPENSPINSLV-------VVVSARDLDA 271



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601


>gi|444525562|gb|ELV14088.1| Protocadherin gamma-C5 [Tupaia chinensis]
          Length = 868

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+F Q  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYTVQLLASD-AGSPPLHTRLTIRLNISDVNDNAPHFAQQLYTAYIP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNAHL 489



 Score = 38.1 bits (87), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVSE 79
           L+ ++ LD EA   + L +TA +    A++  ++I V +LD NDN P F        + E
Sbjct: 194 LVLEQQLDREAQARHQLVLTAVDGGIPARSGTTLISVIVLDVNDNAPTFQSSVLRVGLPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            APIG L+L        + A D D  TN  LD
Sbjct: 254 NAPIGTLLLR-------LNATDPDEGTNGQLD 278



 Score = 36.6 bits (83), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPVDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDANDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E  P+G +V        +    D+DS  N 
Sbjct: 354 SLVNPVPENTPVGTVV-------GLFNVRDRDSGRNG 383


>gi|62510881|sp|Q5DRC9.1|PCDB5_PANTR RecName: Full=Protocadherin beta-5; Short=PCDH-beta-5; Flags:
           Precursor
          Length = 795

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  L+T++ LD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 391 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 450 FTQTSYTLFVRENNSPALQIGS-----------VSATDRDSGTNA 483



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T    +  + E
Sbjct: 298 GEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAMEVVDVNDNAPELTMSTLSSPIPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPETVVAVFSVSDP 372



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       ++ + +LD NDN P F Q  Y  
Sbjct: 191 YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSLYEV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E +P+ +LV       +V+ A D D+
Sbjct: 250 QVPENSPLNSLV-------VVVSARDLDA 271



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601


>gi|449506248|ref|XP_004186131.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-15 [Taeniopygia
            guttata]
          Length = 2195

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
            A++   GV+  KKPLDYE  + Y L V A  +   ++            V + + D ND+
Sbjct: 1086 AINIKSGVISVKKPLDYERVQSYELRVQADXLQVVRSNVRVPSKSNTAKVFIEVKDENDH 1145

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P FT+  Y G VSE A + + VL        ++A+DKD+
Sbjct: 1146 APVFTKKMYIGGVSEDARMFSSVLK-------VKADDKDT 1178



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 3   HPVQLFAIL--KPALHPPY-------GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AV 51
            P  L++IL   P  +P Y         L   KP++ +  + ++L + A    G    A 
Sbjct: 319 RPGILYSILVGTPEDYPQYFHMNLTTAELTLLKPINRDLHQKFDLVIKAEQDNGHPLPAF 378

Query: 52  CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
            ++ + ILD N+  PYFT+  Y G++ E++P+G  +  N +L  PL +   D D E
Sbjct: 379 ANLHIEILDENNQKPYFTRSTYEGFILESSPVGTTISDNQNLTSPLQLVVLDNDVE 434



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 31/49 (63%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +P+D E  ++Y  S+TA++        +V + ++D NDN+P F+ ++Y+
Sbjct: 467 QPVDREVQQLYTFSMTASDGVQESVPVTVNILVIDANDNSPTFSNISYS 515



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEA----TRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
           AL+   G L  +K LDYE+       +   V A +  G     + +V V + D ND +P 
Sbjct: 866 ALNRHTGELSLRKSLDYESFSDTEATFTFLVEAFDSKGTMPPGLATVTVRVKDMNDYSPE 925

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
           F+Q  Y G V+  A  G ++ T       + AED+D
Sbjct: 926 FSQKLYRGMVAPDAVKGTVITT-------VSAEDRD 954



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F Q  Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIINHEVRIVVRDRNDNSPQFQQQRYYVAVNELTPVGTTIFTGFS 171



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A    ++  ++ + +LD +DN+P FT  +YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYTVCV 828

Query: 78  SEAAPIGALVL 88
            E  P G + L
Sbjct: 829 PENLPPGTVFL 839


>gi|449277761|gb|EMC85812.1| Cadherin-23, partial [Columba livia]
          Length = 3246

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 7/94 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L    GV+L    LD+E T+ Y L++ A +  G +    V ++ILD NDN P F +  Y
Sbjct: 457 SLDKDTGVILLTARLDFETTQRYTLTIIARDGGGEETTGRVRINILDVNDNVPTFQKEAY 516

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            G + E  P    V+        +RA D+DS  N
Sbjct: 517 LGALRENEPSVTQVVR-------LRASDEDSSPN 543



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++  + +DYE  +  N +V A++    +  A   V + I+D NDN P F+Q +Y   V
Sbjct: 2274 GKVVANRTVDYEEVQWLNFTVRASDNGSPRRSAEIPVYLQIVDINDNNPVFSQPSYQKAV 2333

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P+G ++L        ++A D DS   AL+
Sbjct: 2334 FEDVPLGTVILR-------VKATDADSGRFALI 2359



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 8/96 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTAT----NMAGAKAVCSV-IVHILDRNDNTPYFTQLNYT 74
            G++   +PLD E    Y L+VT      N+  A+    + +++I D NDN P FTQ +Y 
Sbjct: 1840 GIIYVNRPLDRERVAEYRLTVTVKDNPENIRNARRDFDLLVIYIADENDNRPLFTQSSYQ 1899

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              V E +P G  V   T L   I A D D  +NA++
Sbjct: 1900 AEVMENSPPGTPV---TMLNGPILALDGDQGSNAVV 1932



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYE--ATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYT 74
           YGV+    PLDYE  A  +  L+V A +       +   V + + D NDN P F++ +Y 
Sbjct: 568 YGVISVNHPLDYEQVANGVIYLTVMAKDAGNPPLNSTVPVTIEVFDENDNPPTFSKASYV 627

Query: 75  GYVSEAAPIGALVL 88
             V E    GA VL
Sbjct: 628 IAVMEDIMAGATVL 641



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 11/100 (11%)

Query: 15   LHPPYGVLLTK-KPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            ++P  G+++   + LD E    + L V A N      ++   VIV++ D ND  P FTQ 
Sbjct: 1101 INPSTGLVMRGVRHLDREQNSSHVLEVEAYNTEQGPMRSSVRVIVYVEDVNDEVPVFTQR 1160

Query: 72   NYTGY-VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y    + E A IG  V        V+RA D+D+    L+
Sbjct: 1161 QYNRLGLRETAGIGTSV-------AVVRATDRDTGNGGLV 1193



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQ 70
           A+    G++   + LDYE T+ Y L V AT+    K    + ++ + I D  D  P F  
Sbjct: 131 AIDSGRGIVSVIRELDYEVTQAYQLQVNATDQDKNKPLSTLANLAITITDVQDMDPIFIN 190

Query: 71  LNYTGYVSEAAPIGALVLTNTSL 93
           L Y+  + E +P G  V   T++
Sbjct: 191 LPYSTNIYENSPPGTTVRMITAI 213



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 20  GVLLTKK-PLDYEATRIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTPYFTQLNYT 74
           GVLL ++ P   EA  +  + V+ T+       A +  +V V++LD NDN P F  L + 
Sbjct: 787 GVLLDRENPNTQEAQLMRRIVVSVTDCGRPPLRATSSATVFVNLLDLNDNDPTFQNLPFA 846

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             ++E  P G+ V    ++ L
Sbjct: 847 AEIAEGLPAGSSVFQVVAIDL 867



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 20  GVLLTKKPLDYEA---TRIYNLSVTATNM------AGAKAVCSVIVHILDRNDNTPYFTQ 70
           G L    PLD E    +  + L+V  T +      + A    +  + ++D NDN P F  
Sbjct: 243 GALTLNGPLDRENPFYSAGFILTVKGTELNDDRTPSNATVTTTFNILVIDINDNAPEFNS 302

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+  + E A +G       +LPL I+ +DKD   N++ +
Sbjct: 303 SEYSVAIPELAQVGF------ALPLFIQVQDKDEGPNSVFE 337



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 38   LSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVI 97
             ++ A ++ G  +  S+ V +LD NDN P F   + T  + E +P G  VL        +
Sbjct: 1973 FTLVARDVGGLNSTASLAVTVLDDNDNRPVFQPASITVRLRENSPPGFSVLQ-------V 2025

Query: 98   RAEDKDSETNALLD 111
             A D DS  N  LD
Sbjct: 2026 MATDADSGLNQQLD 2039



 Score = 34.7 bits (78), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)

Query: 15   LHPPYGVLLTKK--PLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFT 69
            + P  G L  +K   LD E    YNL++ A +  G   + S +   + +LD NDN P   
Sbjct: 1728 ISPVEGELRVRKDAELDRENIPFYNLTIAARDR-GVPPLSSTMMVGIRVLDINDNDPVLL 1786

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             L     +SE  P+ + V         I A D D   NALL
Sbjct: 1787 NLPMNLTLSENTPVSSFVTR-------ILARDADKGPNALL 1820



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG------AKAVCSVIVHILDRNDNT 65
            K  ++P  G +     LD E    Y L+  A +  G       +    V++ +LD ND  
Sbjct: 2369 KFGINPNTGDIYILSALDREKKDHYTLTAVARDNPGDISSNRRENSVQVLITVLDINDFR 2428

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
            P F++  ++  V E  P G  V+T T+  L
Sbjct: 2429 PQFSKSQFSTSVYENEPAGTSVITMTATDL 2458


>gi|403256584|ref|XP_003920949.1| PREDICTED: protocadherin beta-8-like [Saimiri boliviensis
           boliviensis]
          Length = 1136

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           ILKP++   Y +LLT+ PLD E    YN+++TAT++     K    + V I D NDN P 
Sbjct: 390 ILKPSVENFY-MLLTEGPLDREIRAEYNITITATDLGTPRLKTEHGITVLISDVNDNAPA 448

Query: 68  FTQLNYTGYVSE----AAPIGALVLTN 90
           FTQ +YT +V E    A  IG++  T+
Sbjct: 449 FTQTSYTLFVRENNSPALHIGSVSATD 475



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 9/103 (8%)

Query: 9   AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPY 67
           AI KP  L    G +   K LD+E T  Y+L + A++  G    CSV V +LD NDN+P 
Sbjct: 878 AISKPFELSSISGEIRLIKKLDFETTSSYDLDIEASDGGGLSGKCSVSVKVLDVNDNSPE 937

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +  + T  + E +P   + L         R  D+DS  N  +
Sbjct: 938 LSISSLTSPIPENSPETEVAL--------FRIRDRDSGENGKM 972



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           AL+   G +   + LD+E T  Y + + A++ AG    C+V + ++D NDN P  T  ++
Sbjct: 291 ALNERTGEIKIIRKLDFEKTVAYEVDIKASDRAGLSGKCTVKIQVVDINDNAPELTMASF 350

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E +P   + L           +D+DS  N  +
Sbjct: 351 RSSIPENSPETTVAL--------FSIQDRDSGENGRI 379



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 11   LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYF 68
            LKP++   Y  L+T   LD E    YN+++T T++     K   ++ V + D NDN P F
Sbjct: 984  LKPSVENFYR-LVTAGALDRETRAEYNITITVTDLGTPRLKTEYNITVLVSDVNDNAPDF 1042

Query: 69   TQLNYTGYVSE----AAPIGALVLTN 90
            TQ +YT +V E    A  IG++  T+
Sbjct: 1043 TQTSYTLFVRENNSPALHIGSVSATD 1068



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E      L++TA +           +++ +LD NDN P F Q  Y   
Sbjct: 782 YPELVLDTELDREEQAELRLTLTALDGGSPPRSGTAQILILVLDANDNAPVFAQALYEVQ 841

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +PIG+LV+        + A D D+ TN 
Sbjct: 842 VPENSPIGSLVVK-------VSARDLDTGTNG 866



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E      L++ A +  GA        V++ ILD NDN P F Q  Y  
Sbjct: 189 YPELVLDKALDREEQSELRLTLMAVD-GGAPPRTGTALVLIEILDINDNAPEFVQPLYQV 247

Query: 76  YVSEAAPIGALVLT 89
            VSE +P+ +LV T
Sbjct: 248 QVSENSPLESLVAT 261


>gi|380795977|gb|AFE69864.1| protocadherin gamma-C5 isoform 1 precursor, partial [Macaca
           mulatta]
          Length = 943

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+F Q  YT Y+ 
Sbjct: 405 LLTSQPLDREATSHYTIELLASD-AGSPPLHKHLTIRLNISDVNDNAPHFNQQLYTAYIL 463

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 464 ENRPPGSLLCT-------VAASDPDTGDNARL 488



 Score = 41.2 bits (95), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 18  PYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTG 75
           P+  L+ ++ LD EA   + L +TA +    A++  ++I V +LD NDN P F       
Sbjct: 189 PFPELVLEQQLDREAQTRHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRV 248

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + E APIG L+L        + A D D  TN  LD
Sbjct: 249 GIPENAPIGTLLLR-------LNATDPDEGTNGQLD 277



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 293 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLA 352

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 353 SLANPVLESTPVGTVV-------GLFNVRDRDSGRNG 382


>gi|355750267|gb|EHH54605.1| hypothetical protein EGM_15484 [Macaca fascicularis]
          Length = 944

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+F Q  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYTIELLASD-AGSPPLHKHLTIRLNISDVNDNAPHFNQQLYTAYIL 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNARL 489



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 18  PYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTG 75
           P+  L+ ++ LD EA   + L +TA +    A++  ++I V +LD NDN P F       
Sbjct: 190 PFPELVLEQQLDREAQTRHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + E APIG L+L        + A D D  TN  LD
Sbjct: 250 GIPENAPIGTLLLH-------LNATDPDEGTNGQLD 278



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLANPVLESTPVGTVV-------GLFNVRDRDSGRNG 383


>gi|229442265|gb|AAI72775.1| FAT tumor suppressor 2 precursor [synthetic construct]
          Length = 1343

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 14  ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
           ++ P  G++ T KP+DYE   RIY   V A++       +   S+ + + + NDN P F 
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565

Query: 70  QLNYTGYVSEAAPIGALVLTNTSL 93
           ++N TG + +  P+G  ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
            G L+ ++ LD+E    YNLS+ A++       + +C V V +LD N+N   P+F    + 
Sbjct: 979  GALILERELDFERRAGYNLSLWASDGGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G V E +P G  V       +V+ A+D DS  +  L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G+L    PLDYEAT  Y L+VT  ++   +      + V++ D NDN P F    Y   +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE   +G  +   T+       +D DSE N 
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T  PLD E    Y L+V A +       +V  V + + D NDN P  +Q  +   +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP+G  VL        + A D DS +   L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)

Query: 10  ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
           +LKP+       L+   G++ T K +D+     Y L +     +  +A   V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTVVVIDIVDCN 452

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++ P F + +Y G + E  P G  V       L + A D+D   N 
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
            +HP  G+L T + LD E    + L VT  +      K+   V+V ILD NDN P F+ 
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPIFSH 1244



 Score = 35.0 bits (79), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 28  LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           L+ E    Y L + AT      +A+  V+VHILD+ND  P F+  +Y   +SE  P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163


>gi|149017343|gb|EDL76394.1| rCG49295, isoform CRA_ad [Rattus norvegicus]
          Length = 869

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L P  G ++T + LD+E    Y + V A +     + C VI+ +LD NDN P     + 
Sbjct: 293 SLDPVTGDIITLQSLDFEEVEQYTIDVEAKDRGSLSSQCKVIIEVLDENDNRPEIIITSL 352

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + E +P G +V        + +  D+DS  NA
Sbjct: 353 SDQILEDSPSGTVV-------ALFKVRDRDSGENA 380



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L  +K LD E    +NL +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELELQKMLDRETESTHNLVLTAVDGGDPPRSGTAQLRIRVMDANDNPPVFSQEVYRVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P G  VL        +RA D+D   NA
Sbjct: 251 VREDLPPGTTVLR-------LRATDQDEGINA 275



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++TAT+       +  ++ +++ D NDN P F Q  Y   
Sbjct: 401 YYKLVTDSILDREQTPGYNVTITATDRGKPPLSSSTTITLNVADVNDNAPVFQQQAYLIN 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E    G  +         +RA D D  +N L+
Sbjct: 461 VPENNQPGTSITQ-------VRAWDPDVGSNGLV 487


>gi|269914130|ref|NP_001019301.2| protocadherin beta-13 precursor [Pan troglodytes]
          Length = 798

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     K   ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLKTQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 463 NNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + ILD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEILDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263


>gi|301753517|ref|XP_002912645.1| PREDICTED: protocadherin gamma-A1-like [Ailuropoda melanoleuca]
          Length = 811

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+ LD+E  +IY++ + A + AG  A   V+V +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEALDFEEYKIYSMEIQAQDGAGLMARAKVLVKVLDINDNAPEVTMTSVTTSVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P GA++        +I   D+DS  N 
Sbjct: 359 NFPPGAII-------ALISVHDQDSGGNG 380



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 11/90 (12%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T++ LD E T  YN++VTAT+  G  A+ +   + + + D NDN P F Q +Y+ ++ 
Sbjct: 404 LVTERTLDRELTSRYNITVTATDQ-GIPALSTETHISLQVTDINDNPPVFPQDSYSTFIL 462

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P GA + + T       A D DS  NA
Sbjct: 463 ENNPRGASLFSAT-------AHDADSNENA 485



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 12/95 (12%)

Query: 16  HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNY 73
           HP    ++ + PLD E   +++L +TA++        ++++H+  +D NDN P FTQ  Y
Sbjct: 191 HPE---MVLQSPLDREEEAVHHLLLTASDGGNPVRSGTLLIHVQVVDANDNPPAFTQAQY 247

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              + E  P+G  +LT       ++A D D   N 
Sbjct: 248 HMSIPENVPLGTRLLT-------VKATDPDEGVNG 275


>gi|402872850|ref|XP_003900310.1| PREDICTED: protocadherin gamma-A4 [Papio anubis]
          Length = 857

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LLT + LD E    YN++VTAT+           + + ++D NDN P F   +Y+ Y
Sbjct: 432 YYRLLTHRTLDREEVSEYNITVTATDQGIPPLSTETHISLQVMDINDNPPTFPHASYSAY 491

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA +L+ T       A+D DS  NAL+
Sbjct: 492 IPENNPRGASILSMT-------AQDPDSGDNALI 518



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE +  Y++ V A +  G +A   V+V +LD NDN P  T  + T  V E +  G ++
Sbjct: 338 LDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQETSSPGTVI 397

Query: 88  LTNTSLPLVIRAEDKDSETNALL 110
                   +    D DS  N L+
Sbjct: 398 -------ALFNVHDSDSGGNGLV 413



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   +++L +TA +           +++ ++D NDN P FTQ  Y   
Sbjct: 222 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPLFTQPKYHVS 281

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P+G  +LT       ++A D D   N 
Sbjct: 282 VRENVPVGTRLLT-------VKATDPDEGANG 306


>gi|402872830|ref|XP_003900302.1| PREDICTED: protocadherin gamma-C5 [Papio anubis]
          Length = 879

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+F Q  YT Y+ 
Sbjct: 406 LLTSQPLDREATSHYTIELLASD-AGSPPLHKHLTIRLNISDVNDNAPHFNQQLYTAYIL 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E  P G+L+ T       + A D D+  NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNARL 489



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 18  PYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTG 75
           P+  L+ ++ LD EA   + L +TA +    A++  ++I V +LD NDN P F       
Sbjct: 190 PFPELVLEQQLDREAQTRHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            + E APIG L+L        + A D D  TN  LD
Sbjct: 250 GIPENAPIGTLLLR-------LNATDPDEGTNGQLD 278



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 294 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLA 353

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +    V E+ P+G +V        +    D+DS  N 
Sbjct: 354 SLANPVLESTPVGTVV-------GLFNVRDRDSGRNG 383


>gi|109079041|ref|XP_001091535.1| PREDICTED: protocadherin beta-16 [Macaca mulatta]
          Length = 776

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T++ LD EA   YN+++T T+M     K   ++ V I D NDN P 
Sbjct: 392 LLKPSVKNFY-TLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ  YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTFYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  +K +D+E    Y + + AT+  G    C++++ ++D NDN P  T    T  + E
Sbjct: 299 GEIRLRKQVDFEGVTSYEVHIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALTSPIPE 358

Query: 80  AAP 82
            +P
Sbjct: 359 NSP 361



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +        +  VHI  +D NDN P F Q  Y   
Sbjct: 191 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVHIEVVDINDNAPEFEQPIYKVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E + +G+LV T       + A D DS  N 
Sbjct: 251 IPENSSLGSLVAT-------VSARDLDSGANG 275


>gi|402870407|ref|XP_003899216.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4 [Papio anubis]
          Length = 4928

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPVTGVFNLTRVLDYEVQQYYILTVRAEDGGGQFTAIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD +A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVQAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++       A   V+++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSYYVLTIKSSDKGSPSQSASVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGTPPQSSMTRINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 37.7 bits (86), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  VIV +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVIVMVLDINDNNPIFAQTLYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TA +  G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKEQFVLMITAID-GGSPALTGTGTISVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVV 2399



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F + +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFGRPSYY 2878

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2879 LDCPELTEIGSKV 2891



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529


>gi|348514349|ref|XP_003444703.1| PREDICTED: protocadherin alpha-8-like [Oreochromis niloticus]
          Length = 711

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           L P+L      L+TK PLD E    Y L++TA + AG   + S   + V + D NDN+P 
Sbjct: 398 LSPSLQDKMYSLVTKSPLDREKQSQYELTITAKD-AGQPPLSSEKTISVAVSDVNDNSPE 456

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           F+   YT YV+E    GA V +       ++A D+D   NA +
Sbjct: 457 FSLSPYTFYVTEGNNPGASVFS-------VKASDRDENDNARI 492



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 6/72 (8%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +L+ +K LD EA   ++L +TA  + G K       +++V++LD NDNTP F++  Y+  
Sbjct: 194 ILVLQKALDREAAHSHSLVLTA--LDGGKPPKSGDMNILVNVLDVNDNTPIFSKDLYSVK 251

Query: 77  VSEAAPIGALVL 88
           ++E AP+G  V+
Sbjct: 252 LNENAPVGTEVI 263


>gi|397490949|ref|XP_003816443.1| PREDICTED: protocadherin Fat 4 [Pan paniscus]
          Length = 4981

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF I     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFTI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 41.2 bits (95), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E + +G  V
Sbjct: 2782 PENSSLGYTV 2791



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRFSRTSYY 2878

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2879 LDCPELTEIGSKV 2891



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKWPGTLVMT 3529



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)

Query: 8    FAILKP--ALHPPYGVLLTKKPLDYEA------TRIYNLSVTATNMA---GAKAVCSVIV 56
            F +++P   LH   G +      D E+      T +++ +V AT+       K   +V V
Sbjct: 1139 FEMMQPDFELHAISGEITNTHQFDRESLMRRRGTAVFSFTVVATDQGLPQPLKDQATVHV 1198

Query: 57   HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++ D NDN P F +  Y   +SE+A        N +  L + A D D   N L+
Sbjct: 1199 YMKDINDNAPKFLKDFYQATISESA-------ANLTQVLRVSASDVDEGNNGLI 1245



 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTVLQVVARDDDQGSNS 2293


>gi|62510888|sp|Q5DRD6.1|PCDBD_PANTR RecName: Full=Protocadherin beta-13; Short=PCDH-beta-13; Flags:
           Precursor
          Length = 798

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     K   ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLKTQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 463 NNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263


>gi|402872877|ref|XP_003900321.1| PREDICTED: protocadherin beta-13, partial [Papio anubis]
          Length = 603

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     K   ++ V + D NDN P FTQ +YT +V E
Sbjct: 208 LLTERPLDRESRGEYNITITVTDLGTPMLKTQLNITVLVADVNDNAPAFTQTSYTLFVRE 267

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 268 NNSPALHIGS-----------VSATDRDSGTNA 289



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 38/73 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E  + Y +++ A +       C++++ ++D ND+ P  T   +T  + E
Sbjct: 105 GEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTILIQVMDVNDHAPEVTMSAFTSPIPE 164

Query: 80  AAPIGALVLTNTS 92
            AP   + L + S
Sbjct: 165 NAPETVVALFSVS 177



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 26  KPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           K LD EA     L++TA +           V + +LD NDN P F Q  Y   +SE +PI
Sbjct: 4   KALDREAEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQISEDSPI 63

Query: 84  GALVLTNTSLPLVIRAEDKDSETNA 108
           G LV+        + A D D+  N 
Sbjct: 64  GFLVVK-------VSATDVDTGVNG 81


>gi|270006422|gb|EFA02870.1| fat protein [Tribolium castaneum]
          Length = 1781

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  ++ LD E    Y+LSVTA+++      +V  V++H++D NDN+P FT  +++ 
Sbjct: 1037 PDGFLYVRQSLDREDKDYYSLSVTASDLGNPSRSSVVPVVIHVIDENDNSPEFTNASFSF 1096

Query: 76   YVSEAAP----IGALVLTNTSL 93
             + E  P    +G L  T+  +
Sbjct: 1097 NIRENEPPDSFVGKLTATDRDI 1118



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYT 74
           P + ++     LD E    YNL+V AT+       A   +I+H+ D ND+ P F +  Y+
Sbjct: 415 PSFDIVRVNGVLDREEISKYNLTVVATDKGTPPRTATAFLIIHVNDVNDHEPVFEKSEYS 474

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +SE AP G  V         I A D+DS  NA +
Sbjct: 475 AILSELAPSGTYVAG-------ITATDEDSGVNAQI 503



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G ++  K LD E    Y L+V A +    + + S   V V ++D NDN+P FTQ N    
Sbjct: 1253 GQIILSKILDRETVSNYLLTVVARDAGQMRQLSSTTTVSVEVMDENDNSPEFTQTNSKIS 1312

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD 103
            V E  P+      NT L +  RA D D
Sbjct: 1313 VIETTPV------NTEL-IQFRATDAD 1332



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L T+K LD E    Y + V A +       +  +V ++++D NDN+P F  LNY   V
Sbjct: 631 GQLTTRKKLDREEISHYEIHVIAKDQGLPPQSSTATVYLNVIDVNDNSPEFYPLNYFVAV 690

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E    G+ ++        + A D+D   NA++
Sbjct: 691 PENVKPGSSLVK-------VTASDRDEGENAII 716



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G + T K +D E T +Y+L++TA   +A  K + +V+V  LD NDN P F +      ++
Sbjct: 834 GKITTAKKIDREQTLMYSLTITARVGLAYGKTLVNVVV--LDLNDNKPVFDRDKDEVKLA 891

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E A +G  V        + RA D D+  N+
Sbjct: 892 ENAAVGQEV-------YLARARDLDAGINS 914



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 26/110 (23%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTP 66
             ++P  GV+ T  P+D E    + L+V AT+ A        A  + +VIV   D NDN P
Sbjct: 1461 GINPVTGVIHTLLPIDRETIDTFRLTVVATDEAQPASARLSANKLVTVIVE--DVNDNAP 1518

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLP------LVIRAEDKDSETNALL 110
             F  +N            A++  NT  P      + + A D DS TN L+
Sbjct: 1519 VFVSMN-----------SAILPQNTQFPKEGALIMNVFARDLDSATNGLV 1557



 Score = 39.3 bits (90), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++ T+  LD E      L+++A +       A   + V ILD ND  P F+Q  +   +
Sbjct: 523 GLITTRDILDREVQGTVELNISARDGGPNPKWAYTQLKVTILDENDEAPRFSQSKFNVSL 582

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE AP G L+        ++ A D D  TN 
Sbjct: 583 SENAPPGTLI-------AMLTASDHDQGTNG 606



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYF 68
            + P  G L   KPLDYE    Y L++TA++    +   +++  + + D NDN P F
Sbjct: 1354 VDPSSGTLYLHKPLDYEELSAYQLNITASDNGNPRLSTTILFAIAVEDANDNPPSF 1409


>gi|397518008|ref|XP_003829192.1| PREDICTED: protocadherin beta-13-like [Pan paniscus]
          Length = 798

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     K   ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLKTQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 463 NNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263


>gi|332244501|ref|XP_003271412.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4-like [Nomascus
            leucogenys]
          Length = 4981

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGVNSQL 1979



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    V E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSVVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGIITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 10/92 (10%)

Query: 21   VLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            V LT K LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V 
Sbjct: 1267 VALTGK-LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVL 1325

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   IG LV +       + A D DS  NA L
Sbjct: 1326 ENMRIGELVSS-------VTATDSDSGDNADL 1350



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V+E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVTEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKEHFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2879 LDCPELTEIGSKV 2891



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            G+L   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GILKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+          +V + +LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPIFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDQGSNS 2293


>gi|301629645|ref|XP_002943948.1| PREDICTED: protocadherin-16-like, partial [Xenopus (Silurana)
            tropicalis]
          Length = 1933

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G ++    LD+EA   YNL++ A++    +   SV  ++++LD NDN P F +  Y+  +
Sbjct: 1183 GSIILTDSLDFEAISFYNLTLGASDRGVPQRSHSVPVLINVLDINDNPPVFPRPLYSVLL 1242

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SE AP+G+ VL        + A+D DS +N L+
Sbjct: 1243 SEEAPVGSEVLR-------VLAQDSDSGSNGLV 1268



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFT 69
           K  LHP  G L   + LD E T  YNL+V A +    +  +  ++ V +LD ND  P F 
Sbjct: 627 KFQLHPSSGALTVVRTLDRETTEGYNLTVVAMDHGSPRLSSTQTLSVSLLDVNDEAPSFE 686

Query: 70  QLNYTGYVSEAAPIGALVL 88
           +  Y   V E  P+G  VL
Sbjct: 687 KPQYDAQVQENQPVGTTVL 705



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 48/117 (41%), Gaps = 30/117 (25%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---------------------AVC 52
           AL P  GVL TK PLD EA  +Y L+   T    A                      +  
Sbjct: 731 ALDPETGVLTTKVPLDREAKELYKLTGQITVAQAAMLDYEQNPRHKLVLQAETQQHLSFA 790

Query: 53  SVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNA 108
           ++ + +LD NDN P F    YT Y  EA P G+        PL+ + AED D   N 
Sbjct: 791 TLTISLLDLNDNAPRFQLPRYTAYTQEAQPDGS--------PLIQVLAEDPDQGLNG 839



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G L  +  LD E+   Y L+V A+   G + A C+V V + D NDN+P  ++  +    +
Sbjct: 190 GWLYVRGALDRESREAYVLAVLASAGPGTRTATCTVRVRVTDENDNSPRLSEERFFLSAT 249

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P G  V         + A D+D+  N 
Sbjct: 250 ENRPPGETVGR-------VSATDRDAGPNG 272



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 15   LHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            +HP  G L   K ++ +  + + ++ V A +       ++ +V   ++D ND++P F+Q 
Sbjct: 1061 IHPDNGTLFANKLVELDPQSPLVDVLVEARDHGSPSLASLTTVQFLVVDANDHSPTFSQS 1120

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD-SETNALLD 111
             Y+  V E  P+G+ V       L++   D D ++ NA LD
Sbjct: 1121 QYSASVPEDLPLGSTV-------LILEVTDADFTQENAALD 1154



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   + LDYE  + Y+L+V  ++         + + + D NDN+P F +  Y   + E
Sbjct: 965  GQIWLSRQLDYEDRKSYSLTVQTSD-GKHLTHAELTLTLQDVNDNSPEFGKSLYQVSILE 1023

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             A  G  + T       +RA D+DS  N 
Sbjct: 1024 HAAAGTPLFT-------VRATDRDSGDNG 1045


>gi|402872811|ref|XP_003919525.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin beta-11 [Papio
           anubis]
          Length = 797

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+T  YN+++T T++     K   ++ V + 
Sbjct: 384 SIPEDLPFVLKSSVEN-YYTLETERPLDRESTAEYNITITVTDLGIPRLKTEYNITVLVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 443 DINDNAPTFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 8/82 (9%)

Query: 27  PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
           PLD+E    Y++ + AT+  G     +V + ++D NDN P  T  + T  + E AP    
Sbjct: 306 PLDFETIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSITSPIPETAP---- 361

Query: 87  VLTNTSLPLVIRAEDKDSETNA 108
                ++ +V   +D DS  N 
Sbjct: 362 ----ETVVMVFSIQDIDSGDNG 379



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDTNDNSPF 560


>gi|395736281|ref|XP_003776726.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin beta-10 [Pongo
           abelii]
          Length = 798

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  ++ LDYE    Y +++ A +  G  A C V+V +LD NDN P     +++
Sbjct: 294 INPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPELIVSSFS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V+E +P  AL         V +  D+DS  N 
Sbjct: 354 NSVAENSPETALA--------VFKINDRDSGQNG 379



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E     +L++TA +          +V + +LD NDN P F Q  Y   
Sbjct: 191 YPELVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRIVVLDVNDNAPQFAQALYETQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDGSTN 115
             E +PIG L++        + AED DS  NA       D S N
Sbjct: 251 APENSPIGFLIVK-------VSAEDVDSGVNAEVSYSFFDASEN 287



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560


>gi|354500179|ref|XP_003512178.1| PREDICTED: protocadherin beta-7-like [Cricetulus griseus]
          Length = 763

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHIL 59
           S P  L  +LKP++   Y  L+T+ PLD E+   YN+++T T++   +     ++ V + 
Sbjct: 384 SIPHDLPFVLKPSVENFY-TLVTEMPLDRESHTEYNITITVTDLGTPRLTTQHTITVQVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 443 DVNDNAPAFTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 484



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+
Sbjct: 511 GQLFALRALDYEALQTFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPF 560



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           L+  + LD E    + L++TA +        + +V IL  D NDN+P F Q  Y     E
Sbjct: 194 LVLDQTLDREELAEFTLTLTALDGGSPPRSGTALVRILVLDINDNSPEFVQSLYKVQSYE 253

Query: 80  AAPIGALVL 88
             P+G+LV+
Sbjct: 254 NTPVGSLVV 262


>gi|297674308|ref|XP_002815174.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4 [Pongo abelii]
          Length = 5022

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3180 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3239

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3240 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3271



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDINDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2765 GEIRSIRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2823

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2824 PENSPLGYTV 2833



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3285 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3344

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3345 YYFEISEAAPKGTIV 3359



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L V AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQVVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.1 bits (87), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2862 INPSTGDIIISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2920

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2921 LDCPELTEIGSKV 2933



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 16/96 (16%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
            LD E    Y L+V AT+  G +++ S   V+V +LD NDN P F Q  Y   ++E     
Sbjct: 2112 LDREEVSNYTLTVVATD-KGQQSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN---- 2166

Query: 85   ALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
               LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 --TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3496 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3554

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3555 -SEGEVMENKRPGTLVMT 3571



 Score = 35.4 bits (80), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 34.7 bits (78), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDQGSNS 2293


>gi|395817819|ref|XP_003782345.1| PREDICTED: protocadherin beta-4-like [Otolemur garnettii]
          Length = 1495

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
            LKP++   Y  L+T   LD E T  YN+++T T++     K   S+ V + D NDN+P 
Sbjct: 395 FLKPSVENFY-TLVTNTALDRETTSEYNVTITVTDLGSPRLKTEHSITVLVSDLNDNSPA 453

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D+DS TNA
Sbjct: 454 FTQTSYTVFVRENNSPALHIGT-----------ISATDRDSGTNA 487



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +L KK LD+E  + Y + + AT+  G     +V++ ++D NDN P  T  + T  + E
Sbjct: 1203 GEILLKKKLDFEKIKSYRVEIEATDGGGLSGKGTVVIEVVDVNDNAPELTISSITSSIPE 1262

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             AP         ++  + R  D+DS  N 
Sbjct: 1263 NAP--------ETVVSIFRIRDRDSGDNG 1283



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 2    SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
            S P  L  +LKP     Y  L+T++PLD E    YN+++T +++     K   S+ + + 
Sbjct: 1288 SIPDNLPFLLKPIFKNFY-TLVTERPLDREKRAEYNITITVSDLGTPRLKTEYSITLMVS 1346

Query: 60   DRNDNTPYFTQLNYTGYVSE 79
            D NDN P F Q +YT +V E
Sbjct: 1347 DVNDNAPTFIQNSYTLFVRE 1366



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
           G L   + LD+E  + Y +++ AT+  G    C V + ++D NDN P  T
Sbjct: 302 GELFLMQKLDFEFVQTYTINIQATDGGGLSGSCVVFIKVMDLNDNPPELT 351



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 18  PYGVLLTK----KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQL 71
           P G++L +    K LD E      L++TA +        + ++HI  LD NDN P F  L
Sbjct: 189 PDGIMLPQLVLDKALDREEQSEIRLTLTALDGGTPPRSGTAVIHIEVLDINDNAPEFAML 248

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRA 99
            Y   V E  P+G+ + T ++  L I A
Sbjct: 249 LYEVQVPENTPVGSHITTVSARDLDIGA 276



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
            Y  L+  K LD E    ++L++ A +        +V+V IL  D NDN P F    Y  +
Sbjct: 1095 YPDLVQDKALDREEQAEFSLTLIALDGGSPPRSGTVMVQILIMDVNDNAPEFVHTPYEVH 1154

Query: 77   VSEAAPIGALVLTNTS 92
            V E  P+ + V + T+
Sbjct: 1155 VLENCPVDSAVFSVTA 1170


>gi|165932370|ref|NP_078858.4| protocadherin Fat 4 precursor [Homo sapiens]
 gi|172046149|sp|Q6V0I7.2|FAT4_HUMAN RecName: Full=Protocadherin Fat 4; Short=hFat4; AltName:
            Full=Cadherin family member 14; AltName: Full=FAT tumor
            suppressor homolog 4; AltName: Full=Fat-like cadherin
            protein FAT-J; Flags: Precursor
          Length = 4981

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            A L   ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F
Sbjct: 2814 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 2872

Query: 69   TQLNYTGYVSEAAPIGALV 87
            ++ +Y     E   IG+ V
Sbjct: 2873 SRTSYYLDCPELTEIGSKV 2891



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+  NA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASKNAVI 2399



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 35.0 bits (79), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDRGSNS 2293


>gi|156383896|ref|XP_001633068.1| predicted protein [Nematostella vectensis]
 gi|156220133|gb|EDO41005.1| predicted protein [Nematostella vectensis]
          Length = 1610

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            + P  G++ T + LD E+   YNL VTA  +N +  +  CSV V ++D ND+TP FT   
Sbjct: 1015 VDPFTGIITTTRALDRESIPAYNLMVTARNSNSSDMEVNCSVHVIVMDTNDHTPSFTMAR 1074

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y     E  P+G+ +         +RA D D   NA
Sbjct: 1075 YYISTPETTPVGSTLFR-------VRAVDGDDGINA 1103



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQ 70
           A+    GVL     LD E  + Y  SV A +    +    V  V V++LD NDN P F +
Sbjct: 807 AIDKDTGVLRAVGSLDREGIKNYTFSVIAQDSIPNRPLVNVTMVTVNLLDVNDNDPVFDR 866

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             YT  VSE A  G  VL        IRA D D  +NA
Sbjct: 867 DVYTANVSEDASPGLTVLK-------IRAVDNDLASNA 897



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
            +H   GV+ T+KPLD E    ++L++TA +       A+  V + + D ND  P   Q  
Sbjct: 1429 IHNVTGVISTRKPLDREMVSRFDLTITAEDEGRPSRMALGYVTIFVNDENDFAPVIEQCE 1488

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
                VSE A IG+ V +       I A DKD  +N
Sbjct: 1489 QLVSVSENAHIGSAVAS-------INAVDKDDPSN 1516



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            G+++T   LD E    YN++VTA++     A C++IV I D NDN+P F Q
Sbjct: 1545 GIIITAGLLDRERQDNYNITVTASD-GNHIATCNIIVRITDVNDNSPVFNQ 1594



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 10/94 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           G+++    LD E   +Y+++V A      AG  +  ++ V + D NDN+P F++  Y+  
Sbjct: 378 GIIIVNGTLDREKKDLYSITVIARETETSAGFHSNVTITVMLRDENDNSPIFSRALYSSP 437

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P G  V+        + A D D  +NA++
Sbjct: 438 IYENEPPGTFVIQ-------VSANDSDIGSNAMV 464



 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 16/98 (16%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN---------MAGAKAVCSVIVHILDRNDNTPYFTQ 70
           GV+   + LD+E    Y L+++A+N           G      V V++LD +D    F  
Sbjct: 165 GVIRLARELDFEQMTQYKLNISASNPLTNDTVIPKNGLSNWTMVTVNVLDADDLPVRFNN 224

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y+  + E A +G++V+        + A+D D   NA
Sbjct: 225 YSYSASIPENAAMGSVVMQ-------VHAKDLDKSINA 255



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--------KAVCSVIVHILDRNDNTPYFTQL 71
           G+L     LD E    ++L VTA++  G             +V +++LD NDN P   ++
Sbjct: 593 GLLQLNHTLDREVVSKHSLRVTASDRGGEFMADGSSLNTTINVTINVLDSNDNIPVCDKV 652

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            YT  + E   +G  ++        +   D+DS  NA L
Sbjct: 653 YYTISIPENTSVGQSLIH-------LNCTDQDSGENAHL 684



 Score = 34.7 bits (78), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDR 61
           ++P+++F I         G +     LD E    Y L + A      +    V++ + D 
Sbjct: 265 TNPLRMFNIANIT-----GEITLNGSLDRETIAEYRLRILAY-CTIYQDHTEVLITVTDV 318

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           NDN P FT  +Y   V+E A IG  V+        ++AED D   NA
Sbjct: 319 NDNIPLFTLPSYNTTVNENAAIGTYVIQ-------VQAEDIDQGVNA 358



 Score = 34.7 bits (78), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 11/93 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTG 75
           G + T + LD E    + L VTA++ A    +      V+V +LD NDN+P F + +Y  
Sbjct: 486 GTITTSRRLDRENITTFRLRVTASDGAPLSTIRVSVVDVVVTVLDINDNSPEFVRPSYNF 545

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E A  GA++        +I A D+D + N 
Sbjct: 546 SVIETALPGAIL-------GIISAVDRDKDLNG 571


>gi|426345436|ref|XP_004040420.1| PREDICTED: protocadherin Fat 4 [Gorilla gorilla gorilla]
          Length = 4981

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPVFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 41.2 bits (95), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L V AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQVVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASNAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            A L   ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F
Sbjct: 2814 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 2872

Query: 69   TQLNY 73
            ++ +Y
Sbjct: 2873 SRTSY 2877



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        + +V I  LD ND  P F    Y    
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSMVSIVLLDINDFVPVFEPSPY---- 2264

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            S + P     L  T L +V R +D+ S +
Sbjct: 2265 SVSVPENLGTLPRTILQVVARDDDQGSNS 2293



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKQPGTLVMT 3529



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086


>gi|355687592|gb|EHH26176.1| hypothetical protein EGK_16078 [Macaca mulatta]
          Length = 4981

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRVLDYEVQQYYILTVRAEDGGGQFTAIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVL 88
              + E  P+G+ VL
Sbjct: 1951 TSLMENLPVGSTVL 1964



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD +A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NGKNGTISLLGPLDVQAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSYYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMTRINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 VDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.1 bits (87), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIIATDGGNLQSPNQAIVTITVLDTQDNPPVFGQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 37.7 bits (86), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2879 LDCPELTEIGSKV 2891



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  VIV +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVIVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TA +  G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKEQFVLMITAVD-GGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVV 2399



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 34.3 bits (77), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            G+L   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GLLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQASDPDSGPNSYIE 2086


>gi|297293338|ref|XP_002804233.1| PREDICTED: protocadherin Fat 4-like isoform 2 [Macaca mulatta]
          Length = 4981

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRVLDYEVQQYYILTVRAEDGGGQFTAIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSEL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD +A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NGKNGTISLLGPLDVQAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSYYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMTRINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 VDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 38.9 bits (89), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKEQFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVV 2399



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFGQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2879 LDCPELTEIGSKV 2891



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  VIV +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVIVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITITAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            G+L   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GLLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQASDPDSGPNSYIE 2086


>gi|431892560|gb|ELK02993.1| Protocadherin beta-4 [Pteropus alecto]
          Length = 735

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEA 80
           + LTKK LD+E  + Y++ + AT+  G     +V++ ++D NDN P  T  + T ++SE 
Sbjct: 300 IRLTKK-LDFEQIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNAPELTMSSLTSFISEN 358

Query: 81  APIGALVLTNTSLPLVIRAEDKDSETNA 108
           AP         ++  + R  D+DS  N 
Sbjct: 359 AP--------ETVVAIFRIRDRDSGDNG 378



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           ILKP     Y  L+T+ PLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 391 ILKPTFKNFY-TLVTESPLDRETRSEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           I A D+D+  NA
Sbjct: 450 FTQTSYTLFVRENNSPALHIGS-----------ISATDRDAGANA 483


>gi|297676219|ref|XP_002816038.1| PREDICTED: protocadherin beta-17-like [Pongo abelii]
          Length = 796

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  LLT+  LD E+   YN+++T T++     K   ++ V + D NDN P 
Sbjct: 393 LLKPTLENFY-TLLTEGALDRESRAEYNITITVTDLGTPRLKTEYNITVRVSDVNDNAPA 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 452 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 485



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 38/75 (50%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E  + Y++ V A++  G    C+V + ++D NDN P  T       + E
Sbjct: 300 GEIRLKKALDFEEIQSYHMEVEASDGGGLSGKCTVAIEVMDINDNAPELTMSLLISDILE 359

Query: 80  AAPIGALVLTNTSLP 94
            +P  A+ +   S P
Sbjct: 360 NSPETAVAVFGISDP 374



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +      +    V++ I+D NDN P F Q  Y   
Sbjct: 192 YPELVLDQALDREEQPQLRLTLTALDGGSPPRIGTSQVLIVIVDINDNVPEFAQRRYEVQ 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G+LV+T       + A D D+ T+  L
Sbjct: 252 VPENTPTGSLVIT-------VSARDLDAGTHGEL 278


>gi|297293336|ref|XP_002804232.1| PREDICTED: protocadherin Fat 4-like isoform 1 [Macaca mulatta]
          Length = 4981

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRVLDYEVQQYYILTVRAEDGGGQFTAIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSEL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD +A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NGKNGTISLLGPLDVQAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSYYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMTRINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 VDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFGQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 37.7 bits (86), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2879 LDCPELTEIGSKV 2891



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  VIV +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVIVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TA +  G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKEQFVLMITAVD-GGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVV 2399



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITITAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            G+L   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GLLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQASDPDSGPNSYIE 2086


>gi|410220660|gb|JAA07549.1| FAT tumor suppressor homolog 4 [Pan troglodytes]
 gi|410307816|gb|JAA32508.1| FAT tumor suppressor homolog 4 [Pan troglodytes]
          Length = 4983

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3140 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3199

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3200 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3231



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF I     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFTI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2725 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2783

Query: 78   SEAAPIGALV 87
             E + +G  V
Sbjct: 2784 PENSSLGYTV 2793



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQTRSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3245 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3304

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3305 YYFEISEAAPKGTIV 3319



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            A L   ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F
Sbjct: 2816 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 2874

Query: 69   TQLNYTGYVSEAAPIGALV 87
            ++ +Y     E   IG+ V
Sbjct: 2875 SRTSYYLDCPELTEIGSKV 2893



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3456 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTVS 3515

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3516 E--GEVMENKRPGTLVMT 3531



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDQGSNS 2293


>gi|403256576|ref|XP_003920945.1| PREDICTED: protocadherin beta-8-like [Saimiri boliviensis
           boliviensis]
          Length = 1087

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 7/87 (8%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           ILKP++   Y  L+T+KPLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 392 ILKPSVESFY-TLVTEKPLDRERNTDYNVTITVTDLGTPRLKTEYNITVWVSDINDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTN 90
           FTQ +YT +V E    A  IG++  T+
Sbjct: 451 FTQTSYTLFVRENNSPALHIGSVSATD 477



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+   G L  K  LDYEA + Y L++ A +  G    C+V+V + D NDN P     +  
Sbjct: 294 LNSTSGNLYLKSELDYEAIQTYTLTIQAKDGGGLSGKCTVVVEVTDVNDNQPELLLSSLN 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E +P         ++  V R  D+DS  N 
Sbjct: 354 SPIPENSP--------ETVVAVFRIRDRDSGNNG 379



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 6/75 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T +++   K    + + +L  D NDN P FTQ +YT +V E
Sbjct: 897 LLTERPLDRESKAEYNITITVSDLGTPKRTTQLNMTVLVSDVNDNAPAFTQTSYTLFVRE 956

Query: 80  ----AAPIGALVLTN 90
               A  IG++  T+
Sbjct: 957 NNSPALHIGSVSATD 971



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 8/94 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  +K LD+E    Y +++ A +  G    C+V++ ++D ND+ P  T   +T  + E
Sbjct: 793 GEIRLEKQLDFEKLHSYEINIEARDAGGFSGKCTVLIQVMDVNDHAPEVTMSAFTSPIPE 852

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            AP   + L            D DSE N  +  S
Sbjct: 853 NAPETVVAL--------FSVLDLDSEENGKISCS 878



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V V ++D NDN P F Q  Y   
Sbjct: 685 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYVEVVDFNDNAPEFEQPFYRVQ 744

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +SE +PIG LV+        + A D D+  N 
Sbjct: 745 ISEDSPIGFLVIK-------VSATDADTGVNG 769



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E     +L + A +        + +VHI+  D NDN P F Q  Y   
Sbjct: 191 YPELVLNQALDREDIPELSLVLMALDGGSPPRSGTALVHIMVVDINDNAPEFVQSLYEVQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E +P+G++V++       + A D D+ +N 
Sbjct: 251 APENSPVGSMVVS-------VSARDLDTGSNG 275


>gi|297295310|ref|XP_001088004.2| PREDICTED: cadherin-23-like [Macaca mulatta]
          Length = 1649

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  LLT + LD E    YN++VTAT+           + + ++D NDN P F   +Y+ Y
Sbjct: 1230 YYRLLTHRTLDREEVSEYNITVTATDQGIPPLSTETHISLQVMDINDNPPTFPHASYSAY 1289

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E  P GA +L+ T       A+D DS  NAL+
Sbjct: 1290 IPENNPRGASILSMT-------AQDPDSGDNALI 1316



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T   LD E    YN+S+ A++  G+  + +   +I++++D NDN P F  L+Y+ 
Sbjct: 401 YYRLVTATSLDREQMSEYNISLRASD-GGSPPLSTETHIILNVIDINDNPPTFPHLSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + +       + A+D DS  NA
Sbjct: 460 YIPENNPRGASIFS-------VTAQDPDSNDNA 485



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            LDYE +  Y++ V A +  G +A   V+V +LD NDN P  T  + T  V E +  G ++
Sbjct: 1136 LDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQETSSPGTVI 1195

Query: 88   LTNTSLPLVIRAEDKDSETNALL 110
                    +    D DS  N L+
Sbjct: 1196 -------ALFNVHDSDSGGNGLV 1211



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI----LDRNDNTPYFTQLNYT 74
           Y  L+ ++ LD E   I+ L + A++  G   V S  +HI    LD NDN P FTQ  Y 
Sbjct: 191 YPELVLEQALDREKKEIHQLVLVASD--GGDPVHSGNLHIQVIVLDANDNPPMFTQSEYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E  P+G  +LT       + A D D   NA
Sbjct: 249 VSVWENVPVGTRLLT-------VNATDPDEGFNA 275



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L   K LDYE    Y + + A +  G  +   +++ +LD NDN P  T  + TG V E
Sbjct: 299 GELSILKNLDYEDAMFYEIKIEAQDGPGLLSRAKILLTVLDVNDNAPEITITSLTGSVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +G  +        +I   D+DS  N 
Sbjct: 359 EGTVGREI-------ALIDVHDRDSGQNG 380



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L+ ++ LD E   +++L +TA +           +++ ++D NDN P FTQ  Y   
Sbjct: 1020 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPLFTQPKYHVS 1079

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P+G  +LT       ++A D D   N 
Sbjct: 1080 VRENVPVGTRLLT-------VKATDPDEGANG 1104


>gi|119625608|gb|EAX05203.1| FAT tumor suppressor homolog 4 (Drosophila) [Homo sapiens]
          Length = 4929

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3087 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3146

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3147 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3178



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2672 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2730

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2731 PENSPLGYTV 2740



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 41.2 bits (95), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3192 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3251

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3252 YYFEISEAAPKGTIV 3266



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            A L   ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F
Sbjct: 2763 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 2821

Query: 69   TQLNYTGYVSEAAPIGALV 87
            ++ +Y     E   IG+ V
Sbjct: 2822 SRTSYYLDCPELTEIGSKV 2840



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2261 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2319

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+  NA++
Sbjct: 2320 IPEDAPTGTDV-------LLVNASDADASKNAVI 2346



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2059 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2113

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2114 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2146



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3403 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3461

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3462 -SEGEVMENKRPGTLVMT 3478



 Score = 35.4 bits (80), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1945 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2004

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2005 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2033



 Score = 35.0 bits (79), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2156 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2215

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2216 PEN--LG--TLPRTILQVVARDDDRGSNS 2240


>gi|332820147|ref|XP_526682.3| PREDICTED: protocadherin Fat 4 isoform 2 [Pan troglodytes]
          Length = 4981

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF I     +   G +    PLD  A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFTI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E + +G  V
Sbjct: 2782 PENSSLGYTV 2791



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQTRSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVI 2399



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            A L   ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F
Sbjct: 2814 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 2872

Query: 69   TQLNYTGYVSEAAPIGALV 87
            ++ +Y     E   IG+ V
Sbjct: 2873 SRTSYYLDCPELTEIGSKV 2891



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 35.0 bits (79), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 34.7 bits (78), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
            G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2268

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E   +G   L  T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDQGSNS 2293


>gi|355749557|gb|EHH53956.1| hypothetical protein EGM_14676 [Macaca fascicularis]
          Length = 4981

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPITGVFNLTRVLDYEVQQYYILTVRAEDGGGQFTAIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSEL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD +A   Y + + A++M   +   SVI  V++ D
Sbjct: 935  NPKNLFAI-----NGKNGTISLLGPLDVQAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSYYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2782 PENSPLGYTV 2791



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMTRINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y  ++ E  P G+ + T       + A D D  TN 
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYEAT  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 40.8 bits (94), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F+Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         I A D DS  NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V V +   N+  P F    
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNVQLKGTNEYVPRFVSKL 3302

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317



 Score = 38.5 bits (88), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F Q+ Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFGQVAYSFVV 802

Query: 78  SEAAPIG 84
            E   +G
Sbjct: 803 FENVALG 809



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2820 INPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2878

Query: 75   GYVSEAAPIGALV 87
                E   IG+ V
Sbjct: 2879 LDCPELTEIGSKV 2891



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  VIV +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVIVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
              LT T + + + A D D  TN      +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199



 Score = 37.0 bits (84), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +Y   V E A +G+ VL        + A D D  TN  +
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNXXI 285



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    + L +TA +  G+ A+    ++ V + D NDN P F    Y   
Sbjct: 2314 GELGVTQSLDRETKEQFVLMITAVD-GGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + E AP G  V       L++ A D D+ TNA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASTNAVV 2399



 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529



 Score = 34.3 bits (77), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            G+L   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 1998 GLLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQASDPDSGPNSYIE 2086


>gi|302564429|ref|NP_001181814.1| protocadherin beta-13 precursor [Macaca mulatta]
          Length = 753

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     K   ++ V + D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRGEYNITITVTDLGTPMLKTQLNITVLVADVNDNAPAFTQTSYTLFVRE 462

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 463 NNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T  + E
Sbjct: 300 GEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVMDVNDHAPEVTMSAFTSPIPE 359

Query: 80  AAPIGALVLTNTS 92
            AP   + L + S
Sbjct: 360 NAPETVVALFSVS 372



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD EA     L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREAEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +PIG LV+
Sbjct: 252 ISEDSPIGFLVV 263


>gi|149017351|gb|EDL76402.1| rCG49295, isoform CRA_al [Rattus norvegicus]
          Length = 761

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 179 SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 237

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 238 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 268



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 79  LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 138

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 139 SAPAGMVLIQLNASDP 154



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 292 LVTAGPLDREARSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 350

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 351 ENNRPGDLLCS-------LAASDPDSGLNALI 375


>gi|109079045|ref|XP_001091651.1| PREDICTED: protocadherin beta-13-like isoform 1 [Macaca mulatta]
          Length = 798

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     K   ++ V + D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRGEYNITITVTDLGTPMLKTQLNITVLVADVNDNAPAFTQTSYTLFVRE 462

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 463 NNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T  + E
Sbjct: 300 GEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVMDVNDHAPEVTMSAFTSPIPE 359

Query: 80  AAPIGALVLTNTS 92
            AP   + L + S
Sbjct: 360 NAPETVVALFSVS 372



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD EA     L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREAEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +PIG LV+
Sbjct: 252 ISEDSPIGFLVV 263


>gi|449673392|ref|XP_004207945.1| PREDICTED: protocadherin Fat 4-like [Hydra magnipapillata]
          Length = 2166

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G+L  KK +D+E    YN+SV A++ A  K V  + V ++D NDN P F Q +Y+G V E
Sbjct: 902 GLLFLKKNIDHEKKDFYNISVEASD-ARKKEVIYLPVDVIDVNDNYPIFNQASYSGNVEE 960

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            +         T + + + A DKDS  NA ++
Sbjct: 961 ESD------DFTRVIVTVIASDKDSNLNAEIE 986



 Score = 43.1 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A++   GV+ T   +DYE T+ ++ +V   +      KA  SV + I+D NDN P     
Sbjct: 347 AINSKTGVITTYLHIDYEVTQSFSFTVYVQDGGTPSLKANTSVFIQIVDLNDNVPIMA-- 404

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
           N T YV E          N     V+   DKDS +N+++D S
Sbjct: 405 NQTIYVVENE-------VNEKTIFVLNGVDKDSGSNSIIDYS 439



 Score = 37.0 bits (84), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G + T K +DYE  + + L+++A++        +V+V I++ NDN P F    Y   + E
Sbjct: 1304 GDIYTTKAVDYETVQSFVLNISASDWK-FTTFATVVVTIINLNDNYPQFEMFEYFASILE 1362

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDS 104
             A       T  SL + + A D D+
Sbjct: 1363 NA-------TRNSLVVNVNANDLDA 1380


>gi|444713195|gb|ELW54103.1| Protocadherin gamma-A7 [Tupaia chinensis]
          Length = 1389

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
            Y  L+T K LD E   +YN+++ AT+  G+  + + I   +H+ D NDN P FT  +Y+ 
Sbjct: 966  YYRLVTAKNLDREKLSLYNITLKATD-GGSPPLSTEIHISMHVADTNDNPPAFTHSSYSI 1024

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            YV E  P GA + + T       A+D DS+ NA
Sbjct: 1025 YVPENNPRGASIFSVT-------AQDPDSDENA 1050



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+ K PLD E    ++L +TA +       C+  + I+  D NDN P FTQ  Y   
Sbjct: 190 YPELVLKAPLDREEQSTHHLVLTALDGGEPSRSCTTQIRIIVADANDNPPVFTQDTYRVS 249

Query: 77  VSEAAPIGALVLT 89
           VSE  P G+ VLT
Sbjct: 250 VSENLPPGSSVLT 262



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+T   LD E    YNL+VTA++        S  + +HI D NDN P F Q +Y  +V E
Sbjct: 403 LVTDGALDREQFPDYNLTVTASDRGSPPLSSSRTITLHIADVNDNAPVFQQASYLVHVPE 462

Query: 80  AAPIGA 85
             P GA
Sbjct: 463 NNPPGA 468



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L T + LDYE +  Y + V A +  G+     V++ +LD NDN P  T  + +  + E
Sbjct: 864 GELSTLEGLDYEESSFYEMEVQAQDGPGSLTKAKVLITVLDVNDNAPEVTITSVSSSIPE 923

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +   +D+DS  N 
Sbjct: 924 DTPPGTVI-------ALFYLQDRDSGKNG 945



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G L T + LD+E    Y + V A +     A C + + +LD NDN P  T  + + ++ E
Sbjct: 298 GELTTGEGLDFEERASYTIGVEAKDSGHHTAYCKIQIDVLDENDNAPEITLASESQHIQE 357

Query: 80  AAPIGALV 87
            A  G +V
Sbjct: 358 DALPGTVV 365



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   +++L +TA +           + V ++D ND+ P F+Q  Y   
Sbjct: 756 YPELVLERVLDREEEMVHHLVLTAYDGGSPPRSGTAHIQVIVVDVNDHAPVFSQPQYQAT 815

Query: 77  VSEAAPIGALVLT 89
           + E  P+G  +LT
Sbjct: 816 IPENVPVGTRLLT 828


>gi|14196455|ref|NP_114481.1| protocadherin gamma-A11 isoform 3 precursor [Homo sapiens]
 gi|5457057|gb|AAD43765.1|AF152504_1 protocadherin gamma A11 [Homo sapiens]
          Length = 750

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E  + YN+++TAT+       A   V +++ D NDN P F   +Y+ Y
Sbjct: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAY 461

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + + T+L       D DS+ NAL+
Sbjct: 462 IPENNPRGASIFSVTAL-------DPDSKQNALV 488



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  +  LD+E  R Y + +   +  G     ++++ ++D NDN P  T  +    + E
Sbjct: 300 GEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILE 359

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G ++        ++  +D+DS  N 
Sbjct: 360 NSPPGTVI-------ALLNVQDQDSGENG 381


>gi|354500152|ref|XP_003512166.1| PREDICTED: protocadherin-3-like [Cricetulus griseus]
          Length = 773

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E+   YN+++T T++   +  A  ++ V + D NDN P 
Sbjct: 391 LLKPTFEN-YYTLVTEGPLDRESRAEYNITITVTDLGTPRLTAQHTITVQVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 450 FTQTSYTLFVQENNSPALHIGT-----------ISATDSDSGSNA 483



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +   K LD+E T  YN+ + AT+  G    C+V V +LD NDN P  T    T  + E
Sbjct: 298 GEIRLSKELDFEVTNHYNIEIAATDGGGLSGKCTVAVQVLDVNDNAPELTIRKLTSPIPE 357



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +        + +V + ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDRALDREEQPELTLTLTAVDGGSPPRSGMTTVHIEVVDINDNAPQFVQSLYEVQ 250

Query: 77  VSEAAPIGALVL 88
           V E +P+ ALV+
Sbjct: 251 VPENSPVDALVV 262



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+
Sbjct: 510 GQLFALRALDYEALQNFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPF 559


>gi|383849585|ref|XP_003700425.1| PREDICTED: protocadherin-like wing polarity protein stan-like
           [Megachile rotundata]
          Length = 3164

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFT 69
           + P  GV+ T+ PLD E T +Y + ++ ++ A        A  +++V +LD NDN P FT
Sbjct: 425 IDPRSGVVTTRTPLDREKTEVYTVILSVSDQATPPSARKTANATLVVRVLDDNDNYPQFT 484

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLV--IRAEDKDSETNA 108
           +  Y+ ++ E        L  T+ P++  IRA D DS  NA
Sbjct: 485 ERTYSVWIPED-------LDYTANPVIARIRATDADSGNNA 518



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++   +PLDY+  + + L+VTA++  G      V V++ D N+ +P F    Y+  V E
Sbjct: 756 GLITVAQPLDYKQEKRFVLTVTASDSGGRTDTALVYVNVSDANNFSPVFENAPYSVSVFE 815

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            APIG  V       LV+ A D D   NA
Sbjct: 816 DAPIGTTV-------LVVSATDSDVGKNA 837



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKA---VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
           KPLDYE+TR Y + + A +  G+ A      ++VH+ D NDN P F   ++   VSE   
Sbjct: 546 KPLDYESTRSYKIVIRAQD-GGSPARSNTTQLLVHVKDVNDNAPRFYTSHFQESVSENVA 604

Query: 83  IGALVLTNTSLPLVIRAEDKDSETNALL 110
           IG  +L        I+A D D   NA +
Sbjct: 605 IGCSILR-------IQAYDADEGANAQI 625



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T K LD E    Y  +V A +   A   A  +VI+ + D NDN PYF   NY   V
Sbjct: 651 GWIYTTKQLDREQCSRYQFTVIAADSGEAPKSASATVILTVTDVNDNDPYFDPKNYEAVV 710

Query: 78  SEAAPIGALVLTNTS 92
           SE  P G  V + T+
Sbjct: 711 SEDDPPGTPVTSVTA 725



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLN 72
           L P  G + T+  LD E+  ++   V A + +      S    V++LD ND+ P F    
Sbjct: 311 LDPVSGRVTTRARLDRESVDVHYFKVLAVDDSFPPRTGSTTLQVNVLDANDHAPNFEWPE 370

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Y   V E  P+G+ V+T       ++A D+D+  NA L+
Sbjct: 371 YDASVREGVPVGSTVVT-------VKATDQDAGRNAELE 402



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           ++P  G + T +PLD E    Y L+VTA +  +        V + + D NDN+P F    
Sbjct: 857 INPQTGAITTTRPLDRELIPAYLLTVTARDGGVPPLSDTTDVEISVTDVNDNSPVFEAPQ 916

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y G + E   +G  VL        + A D D++ N 
Sbjct: 917 YQGSIPEDVLVGTSVLR-------VSATDADTDLNG 945



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++ T KPLD E+   Y L   A +           V + I D ND+ P F       Y+
Sbjct: 966  GIIRTAKPLDRESVARYVLKAIAMDRGSPSLSTTVPVTIKIEDINDSPPAFENDKIVLYI 1025

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E +P+G+ V         I A D D   NA++
Sbjct: 1026 AENSPVGSTVGE-------IYAHDPDEGPNAVV 1051


>gi|74228177|dbj|BAE23971.1| unnamed protein product [Mus musculus]
          Length = 671

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 27  SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 85

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 86  TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 116



 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 11/91 (12%)

Query: 23  LTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSE 79
           +T  PLD EA   Y++ VTA++ AG   + +   + ++I D NDN P F Q ++  +V E
Sbjct: 141 VTAGPLDREARSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPE 199

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               G L+ +       + A D DS  NAL+
Sbjct: 200 NNRPGDLLCS-------LAASDPDSGLNALI 223


>gi|344265559|ref|XP_003404851.1| PREDICTED: protocadherin alpha-6-like [Loxodonta africana]
          Length = 805

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDR 61
           P +L +  K      Y  L+ K  LD E    Y+L VTA +  +    A  SV V + D 
Sbjct: 394 PFKLLSTFKN-----YYTLVLKTALDRENVSTYDLVVTARDGGLPSLSATTSVSVEVADV 448

Query: 62  NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           NDN P F Q  YT +V E  P G  + T       + A D DS+ NAL+
Sbjct: 449 NDNAPAFAQPEYTVFVKENNPPGYHIFT-------VSARDADSQENALV 490



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 15/94 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           GV++ +  LD+E   +Y + + AT+     MAG    C+V+V +LD+NDN P     + +
Sbjct: 300 GVIVIQGNLDFEQRNLYEIRIDATDKGHPPMAGH---CTVLVKVLDKNDNAPQIALTSVS 356

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V E A +G ++        +IR  D DS  N 
Sbjct: 357 LPVPEDAELGTVI-------ALIRVSDLDSGDNG 383



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +K LD E    +NL +TAT+  G K        ++V +LD NDN P F Q  Y   +
Sbjct: 194 LVLRKSLDREEIPEHNLLLTATD--GGKPELTGTVQLLVTVLDVNDNAPCFEQSEYEVRI 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            E +  G +V+        + A D+D   N  +  S N
Sbjct: 252 FENSDNGTVVIR-------LNASDRDEGVNKEISYSFN 282


>gi|170589928|ref|XP_001899725.1| Cadherin domain containing protein [Brugia malayi]
 gi|158592851|gb|EDP31447.1| Cadherin domain containing protein [Brugia malayi]
          Length = 4483

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 9/97 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G++   KPLD E    YNL+V A ++   G +A   V+V++ D +D  P+FTQ  Y+  V
Sbjct: 2142 GMINVHKPLDREKCTFYNLTVVAIDVTRQGVRAESYVVVNVDDISDTPPHFTQFFYSISV 2201

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGST 114
            SE+A IG  +L        I A D D   N +  G T
Sbjct: 2202 SESAAIGTQLLQ-------IEAIDPDINDNHISYGIT 2231



 Score = 43.5 bits (101), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++HP  GV+ + K +   A+  +     A N  G +    + ++++  N   PYF+   Y
Sbjct: 1590 SVHPISGVI-SIKLVTSAASVPHTCIAIARNSLGTEDFMELKINVVSENQYAPYFSSTVY 1648

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             GY+ E  P+ + VL      L+++A D D   N L+
Sbjct: 1649 QGYIYENMPLNSSVLLEDGRQLLVKAIDHDRGINGLV 1685



 Score = 43.5 bits (101), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 9/87 (10%)

Query: 20   GVLLTKKPLDYEATR--IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G ++    LDYE TR   + +S+ +     AKAV  V V I D NDN P F   +    +
Sbjct: 2662 GQIVVNSVLDYEKTREIRFLVSLHSQRQLNAKAVSLVTVRITDVNDNKPRFEITSERVVI 2721

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDS 104
            SE  PIG+ +        +IRA D+D+
Sbjct: 2722 SEDLPIGSSI-------TIIRAVDEDA 2741



 Score = 42.7 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++ P  GV+   K LD+E  R++   +TA++     +   +++H+ D ND  P F    +
Sbjct: 2239 SVDPRSGVISLMKSLDFETMRLFKFKLTASDSMQLTSETDLLLHVTDANDVAPRFISKTF 2298

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
               V    PI   +         + A D+D  +N L DG+
Sbjct: 2299 NSVVESETPINHFITK-------LDASDEDIMSN-LGDGN 2330



 Score = 41.2 bits (95), Expect = 0.072,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 34/69 (49%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV+     LD E    Y+ SV A + AG  A   VI+ + D NDN P F Q  Y   ++E
Sbjct: 3072 GVIAAISSLDREIKDQYDFSVLAVSTAGNSAEAKVIIDVGDVNDNAPVFEQNIYHLRIAE 3131

Query: 80   AAPIGALVL 88
               +G  +L
Sbjct: 3132 DEALGKELL 3140



 Score = 39.7 bits (91), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G + T + LD E    Y L V A +        S IV I   D NDN P F   N T  V
Sbjct: 3276 GWITTTEMLDREVKSTYRLIVKAVDGGTPPLSDSTIVEIEVEDENDNAPVFKHCNMTAVV 3335

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
             E+   G ++     LP+ I   DK+  T
Sbjct: 3336 QESVEPGHVI-----LPIFITDNDKEPNT 3359



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G+L     LD+E    + +SV AT+       + C + V ILD NDN P F Q  Y   V
Sbjct: 3174 GLLKLASVLDFEKLEKFMVSVIATDSGKPPLNSTCEIDVEILDVNDNPPLFMQHIYRAMV 3233

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSE 105
             E    G  V+        + A D DSE
Sbjct: 3234 LENMQRGTKVVQ-------VLANDPDSE 3254



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            G + T+   DYEA RI+   +  T+     A  ++ + ++D NDN P F
Sbjct: 2455 GKVYTRNLFDYEAQRIHQFVIMVTDAGDRCAFATLTLSVIDENDNIPQF 2503



 Score = 35.8 bits (81), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 24  TKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDN--TPYFTQLNYTGYVSE 79
           T +P D+E    YNLSV A +       ++C+V+V   D N+N   P F  +     V E
Sbjct: 872 TDEPFDFETINRYNLSVEAMDNGEPMLSSICTVLVEFSDVNENLFPPLFDDIAREATVYE 931

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDS 104
             P+   V         ++A D DS
Sbjct: 932 NVPLWTEVFA-------LKAVDPDS 949



 Score = 35.0 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G+L T   LD EA   Y L++ A +M     +CSV+   V +LD ND+ P      Y   
Sbjct: 973  GILRTSIVLDREACDSYWLTIEACDM-NPVPLCSVLHVFVRVLDINDHIPLSIHPIYFST 1031

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD 103
            + E +P   ++         + AEDKD
Sbjct: 1032 IPENSPEDTVITK-------VEAEDKD 1051


>gi|58865998|ref|NP_001012215.1| protocadherin gamma-B7 precursor [Rattus norvegicus]
 gi|56269452|gb|AAH87084.1| Protocadherin gamma subfamily B, 7 [Rattus norvegicus]
 gi|149017342|gb|EDL76393.1| rCG49295, isoform CRA_ac [Rattus norvegicus]
          Length = 931

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L P  G ++T + LD+E    Y + V A +     + C VI+ +LD NDN P     + 
Sbjct: 293 SLDPVTGDIITLQSLDFEEVEQYTIDVEAKDRGSLSSQCKVIIEVLDENDNRPEIIITSL 352

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + E +P G +V        + +  D+DS  NA
Sbjct: 353 SDQILEDSPSGTVV-------ALFKVRDRDSGENA 380



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L  +K LD E    +NL +TA +           + + ++D NDN P F+Q  Y   
Sbjct: 191 YPELELQKMLDRETESTHNLVLTAVDGGDPPRSGTAQLRIRVMDANDNPPVFSQEVYRVR 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P G  VL        +RA D+D   NA
Sbjct: 251 VREDLPPGTTVLR-------LRATDQDEGINA 275



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+++TAT+       +  ++ +++ D NDN P F Q  Y   
Sbjct: 401 YYKLVTDSILDREQTPGYNVTITATDRGKPPLSSSTTITLNVADVNDNAPVFQQQAYLIN 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E    G  +         +RA D D  +N L+
Sbjct: 461 VPENNQPGTSITQ-------VRAWDPDVGSNGLV 487


>gi|38195903|gb|AAR13653.1| fat-like cadherin FATJ protein [Homo sapiens]
          Length = 3222

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G+L   K LDYE  + + ++++A +         CSV V+++D NDN+P F   
Sbjct: 1436 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 1495

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS TNA++
Sbjct: 1496 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 1527



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L+P  GV    + LDYE  + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 189 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E  P+G+ V       LV    D D   N+ L
Sbjct: 249 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 277



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ +++        SV  +++ILD NDN P F+Q+ ++ +V
Sbjct: 1021 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 1079

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 1080 PENSPLGYTV 1089



 Score = 39.7 bits (91), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 1541 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 1600

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 1601 YYFEISEAAPKGTIV 1615



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
            A L   ++P  G ++  +PL+ E T  Y + V+A + +G      V + + D NDN P F
Sbjct: 1112 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 1170

Query: 69   TQLNYTGYVSEAAPIGALV 87
            ++ +Y     E   IG+ V
Sbjct: 1171 SRTSYYLDCPELTEIGSKV 1189



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
           G L   + LD E    + L +TAT+ +G+ A+    ++ V + D NDN P F    Y   
Sbjct: 612 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 670

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E AP G  V       L++ A D D+  NA++
Sbjct: 671 IPEDAPTGTDV-------LLVNASDADASKNAVI 697



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 410 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 464

Query: 86  LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
             LT T + + + A D D  TN      +++G+TN
Sbjct: 465 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 497



 Score = 35.8 bits (81), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    S++V + D NDN P  T  
Sbjct: 1752 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTVS 1811

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 1812 E--GEVMENKRPGTLVMT 1827



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
           GVL   K LD E+   YNL V   ++    A        V + +LD NDN P F     T
Sbjct: 296 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 355

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 356 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 384



 Score = 35.0 bits (79), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           G +   KPLD E T  Y+L+V AT+        +  V I  LD ND  P F    Y+  V
Sbjct: 507 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 566

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            E   +G   L  T L +V R +D+ S +
Sbjct: 567 PEN--LG--TLPRTILQVVARDDDRGSNS 591


>gi|11128039|ref|NP_061737.1| protocadherin gamma-A11 isoform 1 precursor [Homo sapiens]
 gi|37999842|sp|Q9Y5H2.1|PCDGB_HUMAN RecName: Full=Protocadherin gamma-A11; Short=PCDH-gamma-A11; Flags:
           Precursor
 gi|5456928|gb|AAD43714.1| protocadherin gamma A11 [Homo sapiens]
 gi|119582338|gb|EAW61934.1| hCG1982215, isoform CRA_m [Homo sapiens]
 gi|219520995|gb|AAI71774.1| Protocadherin gamma subfamily A, 11 [Homo sapiens]
 gi|223460162|gb|AAI36782.1| Protocadherin gamma subfamily A, 11 [Homo sapiens]
          Length = 935

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E  + YN+++TAT+       A   V +++ D NDN P F   +Y+ Y
Sbjct: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAY 461

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + + T+L       D DS+ NAL+
Sbjct: 462 IPENNPRGASIFSVTAL-------DPDSKQNALV 488



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  +  LD+E  R Y + +   +  G     ++++ ++D NDN P  T  +    + E
Sbjct: 300 GEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILE 359

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G ++        ++  +D+DS  N 
Sbjct: 360 NSPPGTVI-------ALLNVQDQDSGENG 381


>gi|395817788|ref|XP_003782334.1| PREDICTED: protocadherin gamma-B1-like [Otolemur garnettii]
          Length = 824

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + +K  +D+E +R Y +++ A +  G  + C +I+ ILD+NDNTP     + T  ++E
Sbjct: 299 GEIKSKGSIDFEISRSYTMNIEAKDGGGMTSECKIILEILDQNDNTPDVVFTSVTSSITE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               G +V        + +  DKDS  N 
Sbjct: 359 DTEPGTVV-------ALFKTHDKDSGENG 380



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T   LD E T  YN+ +TAT+       +  S+ +HI D NDN P F Q  Y  +
Sbjct: 401 YYKLVTDGALDREQTAEYNVVITATDRGKPPLSSSTSITLHIGDINDNAPVFHQEIYVVH 460

Query: 77  VSEAAPIG 84
           V+E  P G
Sbjct: 461 VAENNPPG 468



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +KPLD E    + L +TA  M G   V     ++ + + D NDN+P F+Q  Y   +
Sbjct: 194 LVLEKPLDRELQSSHLLVLTA--MDGGNPVLTGTAAIQIEVTDANDNSPVFSQDIYKVSL 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE  P G  VL        + A D+D   NA
Sbjct: 252 SENVPPGTSVLK-------VTATDQDEGVNA 275


>gi|351705183|gb|EHB08102.1| Protocadherin beta-6 [Heterocephalus glaber]
          Length = 749

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP++   Y  L+T  PLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 367 LLKPSIENFY-TLVTDGPLDRERKSEYNITITVTDLGTPRLKTQHNITVQVSDVNDNAPT 425

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D+DS TNA
Sbjct: 426 FTQTSYTLWVPENNSPALHIG-----------TISATDRDSGTNA 459



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  +  LD+E  + Y+L V AT+  G    CS+IV +LD NDN+P  T  +   ++ E
Sbjct: 274 GEIRVRNTLDFEKFQSYHLDVEATDGGGLTGKCSLIVQVLDVNDNSPELTVSSLNSHIPE 333

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETN 107
             P G +V        V    D DSE N
Sbjct: 334 NLP-GVIV-------AVFSVYDADSEHN 353



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L +TA +           + + +LD NDN P F    Y   
Sbjct: 167 YPELVLDKALDREEQPQLRLRITALDGGDPPRTGTSEIRIMVLDSNDNAPEFAHQLYEAT 226

Query: 77  VSEAAPIGALVLTNTSLPL 95
           V E +P+G+LV+T +++ L
Sbjct: 227 VPENSPLGSLVITVSAIDL 245


>gi|344238296|gb|EGV94399.1| Protocadherin-3 [Cricetulus griseus]
          Length = 840

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E+   YN+++T T++   +  A  ++ V + D NDN P 
Sbjct: 357 LLKPTFKN-YYTLVTEGPLDRESRAEYNITITVTDLGTPRLTAQHTITVQVSDVNDNAPA 415

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 416 FTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 449



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A+H   G +   K LD+E T  YN+ + AT+  G    C+V V +LD NDN P  T    
Sbjct: 258 AIHGVTGEIRLSKELDFEVTNHYNIEIAATDGGGFSGKCNVAVQVLDVNDNAPELTIRKL 317

Query: 74  TGYVSE 79
           T  + E
Sbjct: 318 TSPIPE 323



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +          +V + ++D NDN P F Q  Y   
Sbjct: 157 YPELVLDRALDREEQPELTLTLTAVDGGSPPRSGTTTVRIEVVDINDNAPQFVQSLYEVQ 216

Query: 77  VSEAAPIGALVLTNTSLPL 95
           V E +P+ ALVLT +++ L
Sbjct: 217 VPENSPVDALVLTVSAMDL 235



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+         
Sbjct: 555 GQLFALRALDYEALQTFEFRVGATDQ-GSPALSSQALVRVLVLDANDNAPFVLYPLQNAS 613

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +T  +  AA  G LV         + A D+DS  NA L
Sbjct: 614 APFTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 646


>gi|297676176|ref|XP_002816020.1| PREDICTED: protocadherin alpha-2 [Pongo abelii]
          Length = 809

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P     Y  L+   PLD E+   Y L VTA +       A  SV + + D NDN P F
Sbjct: 397 LVPTFKNYYYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATTSVSIEVADVNDNAPAF 456

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Q  YT +V E  P G  + T       + A D D++ NAL+
Sbjct: 457 AQPEYTVFVKENNPPGCHIFT-------VSAWDADAQENALV 491



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 15/102 (14%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTP 66
           K  + P  G + TK  LDYE  + Y + VTAT+     M+G    C + + ++D NDNTP
Sbjct: 292 KFTIDPISGEIRTKGKLDYEEAKSYEIQVTATDKGTPSMSGH---CKISLKLVDINDNTP 348

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  + +  +SE A +G ++        +I   D+DS TN 
Sbjct: 349 EVSITSLSLPISENASLGTVI-------ALITVSDRDSGTNG 383



 Score = 35.4 bits (80), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+  K LD E T   NL + AT+  G K        +++ +LD NDN P F Q  Y   +
Sbjct: 194 LVLGKSLDREETAEVNLLLVATD--GGKPELTGTVQILIKVLDVNDNEPTFAQSVYKVKL 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E    G LV+        + A D D  +N+
Sbjct: 252 LENTANGTLVVK-------LNASDADEGSNS 275


>gi|189236209|ref|XP_971084.2| PREDICTED: similar to AGAP007924-PA [Tribolium castaneum]
          Length = 4974

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 6/82 (7%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  ++ LD E    Y+LSVTA+++      +V  V++H++D NDN+P FT  +++ 
Sbjct: 1037 PDGFLYVRQSLDREDKDYYSLSVTASDLGNPSRSSVVPVVIHVIDENDNSPEFTNASFSF 1096

Query: 76   YVSEAAP----IGALVLTNTSL 93
             + E  P    +G L  T+  +
Sbjct: 1097 NIRENEPPDSFVGKLTATDRDI 1118



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQL 71
            A+ P  G +   +PLDY+  + Y+L++TA ++       + ++ I   D NDN+P F Q 
Sbjct: 3151 AVDPYSGAVTILQPLDYDTIQEYHLNITAEDLGFKPQSTTAMLTITLTDINDNSPTFNQS 3210

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y  Y+SE  P  + V         ++A D DS  NA++
Sbjct: 3211 IYEAYISENLPPNSFVFQ-------VKATDIDSPKNAII 3242



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYT 74
           P + ++     LD E    YNL+V AT+       A   +I+H+ D ND+ P F +  Y+
Sbjct: 415 PSFDIVRVNGVLDREEISKYNLTVVATDKGTPPRTATAFLIIHVNDVNDHEPVFEKSEYS 474

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             +SE AP G  V         I A D+DS  NA +
Sbjct: 475 AILSELAPSGTYVAG-------ITATDEDSGVNAQI 503



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
            +L P  G+L     +D E    Y LS+TA +           + V ILD NDN+P F   
Sbjct: 2094 SLGPVDGLLRVSGRIDRETKSNYTLSITARDRGDPPRATHTKIFVRILDENDNSPVFDPK 2153

Query: 72   NYTGYVSEAAPIGALVL 88
             Y+  ++E A IGA VL
Sbjct: 2154 QYSASIAENASIGASVL 2170



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 11/100 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            +L+P  GV      LDYE  + Y L V A + AG  A+ S   V  ++LD NDNTP F  
Sbjct: 1882 SLNPQTGVFTLTSRLDYEEVQHYILVVQAQD-AGHPALSSTLTVYCNVLDLNDNTPLFDP 1940

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++YT  + E   I   ++T       + A D DS  N  +
Sbjct: 1941 MSYTNEIFENVSIATPIVT-------VSATDLDSGDNGKI 1973



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 13/99 (13%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLN 72
            P G ++TKK LD E   +YNL VTAT+ A        +   V + + D ND +P F   N
Sbjct: 1990 PNGTVITKKELDRERQGLYNLVVTATDQAKPPDQRLSSTVQVTIILKDVNDMSPEFVTPN 2049

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             T  V+E   I  +V       + ++A DKD   N  ++
Sbjct: 2050 ETS-VAENIAINTVV-------MAVKAIDKDEGRNGYIE 2080



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 10/91 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + T   LD E T  Y L+V A +    +     +V+V +LD+NDN P F++L ++  V
Sbjct: 2736 GEIYTNARLDREETPAYELTVEALDQGVPQMTGTATVLVTVLDKNDNPPRFSRL-FSVNV 2794

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +E A +G+ V+  TS        DKD   NA
Sbjct: 2795 TENADLGSFVIQVTS-------SDKDIGDNA 2818



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 10/87 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G ++  K LD E    Y L+V A +    + + S   V V ++D NDN+P FTQ N    
Sbjct: 1253 GQIILSKILDRETVSNYLLTVVARDAGQMRQLSSTTTVSVEVMDENDNSPEFTQTNSKIS 1312

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD 103
            V E  P+      NT L +  RA D D
Sbjct: 1313 VIETTPV------NTEL-IQFRATDAD 1332



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G L T+K LD E    Y + V A +       +  +V ++++D NDN+P F  LNY   V
Sbjct: 631 GQLTTRKKLDREEISHYEIHVIAKDQGLPPQSSTATVYLNVIDVNDNSPEFYPLNYFVAV 690

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E    G+ ++        + A D+D   NA++
Sbjct: 691 PENVKPGSSLVK-------VTASDRDEGENAII 716



 Score = 41.2 bits (95), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
            G++ T   LD E T IY  +V A + +  +   A  ++ + + D NDN+P F+   Y   
Sbjct: 2421 GIITTSAILDREETEIYYFTVMAQDCSATEPRAAAVNLTITVTDENDNSPSFSSTKYEVN 2480

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +S+    G  V          RA D D   N+ +
Sbjct: 2481 ISDKTKAGEFVFG-------ARASDDDIGINSKI 2507



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA----VCSVIVHILDRNDNTPYFTQLNYTG 75
            GV+   + LD E      L++ A N  G +        VIV + D ND  P F Q  Y  
Sbjct: 3366 GVISVSRSLDRETQSRIVLTIMAKNAGGIRGNDTDEAQVIVEVQDGND-PPEFLQTLYEV 3424

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             +SE AP+G+ V         ++A DKD
Sbjct: 3425 EISEGAPVGSKV-------TAVKAVDKD 3445



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTA-TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G + T K +D E T +Y+L++TA   +A  K + +V+V  LD NDN P F +      ++
Sbjct: 834 GKITTAKKIDREQTLMYSLTITARVGLAYGKTLVNVVV--LDLNDNKPVFDRDKDEVKLA 891

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E A +G  V        + RA D D+  N+
Sbjct: 892 ENAAVGQEV-------YLARARDLDAGINS 914



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++ T+  LD E      L+++A +       A   + V ILD ND  P F+Q  +   +
Sbjct: 523 GLITTRDILDREVQGTVELNISARDGGPNPKWAYTQLKVTILDENDEAPRFSQSKFNVSL 582

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           SE AP G L+        ++ A D D  TN 
Sbjct: 583 SENAPPGTLI-------AMLTASDHDQGTNG 606



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 26/110 (23%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCSVIVHILDRNDNTP 66
             ++P  GV+ T  P+D E    + L+V AT+ A        A  + +VIV   D NDN P
Sbjct: 1461 GINPVTGVIHTLLPIDRETIDTFRLTVVATDEAQPASARLSANKLVTVIVE--DVNDNAP 1518

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLP------LVIRAEDKDSETNALL 110
             F  +N            A++  NT  P      + + A D DS TN L+
Sbjct: 1519 VFVSMN-----------SAILPQNTQFPKEGALIMNVFARDLDSATNGLV 1557



 Score = 38.1 bits (87), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYF 68
            + P  G L   KPLDYE    Y L++TA++    +   +++  + + D NDN P F
Sbjct: 1354 VDPSSGTLYLHKPLDYEELSAYQLNITASDNGNPRLSTTILFAIAVEDANDNPPSF 1409



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 14/101 (13%)

Query: 1    MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRI-------YNLSVTATNMAG--AKAV 51
            +  P  LF +      P  G + +K+ L ++ T++       Y+L++ AT+       + 
Sbjct: 2926 LQQPSDLFTV-----DPASGDIFSKRSLRFKYTQMEASPENMYSLTILATDNGKPPMSSE 2980

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
            C V V+++D N+N P F +  Y   V + A  G L+L  T+
Sbjct: 2981 CLVTVNVVDANNNAPKFDKPEYLSPVPDDAQEGQLLLKVTA 3021



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 26   KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSEAAPI 83
            + LD EA   Y LS+ A +        +  V I+  D ND+TP F + +Y   ++E +P+
Sbjct: 2323 RALDREAQAEYTLSLGAMDTGSPPLTGTGTVKIIVQDVNDHTPEFKRQSYHATINENSPL 2382

Query: 84   GALVLTNTSLPLVIRAEDKDSETNALL 110
               V+T T       A DKD   NA +
Sbjct: 2383 STWVVTPT-------ATDKDIGLNAKI 2402



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-------VCSVIVHILDRNDNTPYFTQLN 72
            GV+   K L+YE    Y L+V A + AG             +++ + D NDN P F    
Sbjct: 2205 GVVRVAKNLNYERKSRYVLTVRAEDCAGDVGGEVVRADTAEIVISVSDINDNPPTFLDSP 2264

Query: 73   YTGYVSEAA--PIGALVLT 89
            Y  YV E    P G  V+T
Sbjct: 2265 YLAYVMENTIPPNGGYVIT 2283



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 18/110 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN----MAGAKAVCSVIVHILDRNDNTPYFT 69
            A+    G +  K   DYE   +Y +++ A+N    M G   +  + VHI   N+  P F 
Sbjct: 3256 AIDQKTGRVTAKYSFDYEENDLYTINIVASNPDSPMFG---IAELRVHINGVNEYYPRFI 3312

Query: 70   QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA----LLDGSTN 115
            Q  +   VSE+A +G  V T       ++A D+D+  +     L  GS+N
Sbjct: 3313 QPVFHFDVSESAEVGTQVGT-------VQATDQDAGDDGKVYYLFVGSSN 3355



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI-VHILDRNDNTPYFTQLNYTGYVS 78
            GVL     LD E   +Y L+V A++  G +   +V+ V I D NDN P F +  Y+  + 
Sbjct: 1786 GVLTLVDSLDRETKDVYKLTVRASD--GNQHTDTVLTVQITDTNDNPPAFLETAYSFDIP 1843

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E A  G  V         ++A D D   NA L
Sbjct: 1844 ENAQRGHKVGQ-------VKAVDADLGINAQL 1868


>gi|363746707|ref|XP_001235607.2| PREDICTED: protocadherin beta-14-like, partial [Gallus gallus]
          Length = 460

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A++   G +  ++PLD+EA++ + LSV AT+  G   +C V++ +LD NDN P     ++
Sbjct: 230 AINSTNGEIRVREPLDFEASQKHELSVRATDGGGLSTLCHVLIEVLDVNDNAPEIVVSSF 289

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +  + E    G +V        +    D+DS  N 
Sbjct: 290 SSPIPENVEPGTVV-------ALFAVRDQDSGVNG 317



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
           L+ ++PLD E     + ++ AT+        +  +HI  +D NDN P FT+  YTG V E
Sbjct: 131 LVLQQPLDREEQSELDFTLVATDGGSPPRSGTTQIHIIVMDVNDNAPIFTEDTYTGRVVE 190

Query: 80  AAPIGALVL 88
            AP G+LVL
Sbjct: 191 NAPGGSLVL 199



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 12/106 (11%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
           QL   L+PA    Y  L+T   LD E    + + VTA + AG+  + S     V I D N
Sbjct: 326 QLSFALRPAFKNYYE-LVTVSTLDREERAQHMVVVTAAD-AGSPPLTSTHTFSVDISDVN 383

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           DN P F Q +YT YV E      LV         ++A D D+  NA
Sbjct: 384 DNAPVFNQTSYTMYVHENNAPALLVGA-------VKATDADAGPNA 422


>gi|332234730|ref|XP_003266557.1| PREDICTED: protocadherin beta-10 [Nomascus leucogenys]
          Length = 798

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  ++ LDYE    Y +++ A +  G  A C V+V +LD NDN P     +++
Sbjct: 294 INPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCRVLVEVLDTNDNPPELIVSSFS 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             V+E +P  AL         V +  D+DS  N 
Sbjct: 354 NSVAENSPETALA--------VFKINDRDSGENG 379



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +LKP++   Y +L+T+  LD E    YN+++T T++     K   ++ V + D ND  P 
Sbjct: 392 LLKPSVENFY-ILMTEGALDREIRAEYNITITVTDLGTPRLKTEYNITVLVSDVNDIFPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FT  +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTHTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 41.6 bits (96), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 14/104 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E     +L++TA +          +V V +LD NDN P F +  Y   
Sbjct: 191 YPELVLDKALDREEQGELSLTLTALDGGSPSRSGTSTVRVVVLDVNDNAPQFAKALYETQ 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDGSTN 115
             E +PIG L++        + AED DS  NA       D S N
Sbjct: 251 APENSPIGFLIVK-------VSAEDVDSGVNAEVSYSFFDASEN 287



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560


>gi|149017293|gb|EDL76344.1| rCG49391 [Rattus norvegicus]
          Length = 621

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 17  PPY------GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
           PP+      G +  K  LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T 
Sbjct: 289 PPFVIDEISGEIRLKGALDFEATPYYNMEIVATDSGGLSGKCTVAIQVVDVNDNAPKLTI 348

Query: 71  LNYTGYVSEAAPIGALVLTNTSLP 94
            + T  + E AP   + + + S P
Sbjct: 349 SSLTRSIPENAPEAVVAVFSVSDP 372



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP  +  Y  L+T+ PLD E+   YN+++T +++   +     ++ V ++D NDN P 
Sbjct: 391 LLKPT-YENYYTLVTEGPLDRESRAEYNITITVSDLGTPRLTTQHTITVQVMDINDNAPV 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 450 FTQTSYTMFVHENNSPALHIG-----------TISATDSDSGSNA 483



 Score = 34.7 bits (78), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F +  Y  
Sbjct: 191 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPQFVKSLYAV 249

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 250 EVPEDSPLNALVVT 263


>gi|11056032|ref|NP_061735.1| protocadherin gamma-A1 isoform 1 precursor [Homo sapiens]
 gi|37999844|sp|Q9Y5H4.1|PCDG1_HUMAN RecName: Full=Protocadherin gamma-A1; Short=PCDH-gamma-A1; Flags:
           Precursor
 gi|5456924|gb|AAD43712.1| protocadherin gamma A1 [Homo sapiens]
          Length = 931

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  ++Y++ V A + AG  A   V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E    YN+++TA +  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+ E  P GA + +       +RA D DS  NA +
Sbjct: 460 YIPENNPRGASIFS-------VRAHDLDSNENAQI 487



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D   N 
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275


>gi|66571291|ref|NP_001019304.1| protocadherin beta-1 precursor [Pan troglodytes]
 gi|62510892|sp|Q5DRE0.1|PCDB1_PANTR RecName: Full=Protocadherin beta-1; Short=PCDH-beta-1; Flags:
           Precursor
          Length = 818

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
           P Y  L+  KPLD E     NL++TA +        +  +H+  LD ND+ P F++L Y 
Sbjct: 189 PKYAELVLNKPLDREKQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 9   AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           AILK   + P  G +  + PLD+EA   Y++ + AT+  G  A   V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPP 345


>gi|395537667|ref|XP_003770815.1| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1
           [Sarcophilus harrisii]
          Length = 2651

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHI 58
           +  PV  F I     HP  G ++T   LDYE    Y L++TA +  +       S+ + I
Sbjct: 775 LEDPVPQFRI-----HPDTGTIVTLMELDYEDQAAYTLAITARDNGIPQKSDTTSLEILI 829

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           LD NDN P+F +  Y G V E AP    VL        + A D+DS  N  L
Sbjct: 830 LDANDNVPHFLRDFYQGSVFEDAPPSTSVLQ-------VSATDRDSGPNGRL 874



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 14/106 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           + P  G + T +PLD E    + L VTA +    +      + V + D ND++P F Q+ 
Sbjct: 250 IEPDTGAVTTSRPLDRETKDTHVLKVTAVDHGSPQRSGATYLTVTVSDTNDHSPVFEQVE 309

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDGS 113
           Y   V E   +G  VLT       IRA D D+ +NA     LL+G+
Sbjct: 310 YRETVRENLEVGYEVLT-------IRATDGDAPSNANMRYRLLEGA 348



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
           LH   G L    PLD+EA R Y L + A +      + S   V V +LD NDN P F   
Sbjct: 461 LHSLSGGLDVINPLDFEAIREYTLRIKAQDGGRPPLINSSGLVNVQVLDVNDNAPIFVSS 520

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +   V E  P+G  VL        I+A D DS  NA L
Sbjct: 521 PFQAAVLENVPLGHSVLH-------IQAVDADSGENARL 552



 Score = 45.4 bits (106), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 10/90 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-VCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G++    PLDY+  R Y L VTA++  G ++    V +++ D N + P F   +YT  V 
Sbjct: 689 GLITLALPLDYKQERQYVLGVTASD--GTRSHTAQVFINVTDANTHRPVFQSSHYTVSVR 746

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P+G  + T       I A D+D+  NA
Sbjct: 747 EDQPVGTSIAT-------ISATDEDTGENA 769



 Score = 43.1 bits (100), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQL 71
           + P  GV+ T++ LD E   +YNL   A +    A   A   + V +LD  D  P F Q 
Sbjct: 890 IEPTSGVIRTQRRLDRENVAVYNLRALAVDRGSPAPLSASVEIQVPVLDITDTPPVFDQD 949

Query: 72  NYTGYVSEAAPIGALV----------LTNTSLPLVIRA 99
               +V E +P+G++V              S PLV RA
Sbjct: 950 ELELFVEENSPVGSVVARIRAXXXXXXXXXSAPLVSRA 987



 Score = 41.2 bits (95), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
           +H   G +     LD E    Y   V A +       +  SV + +LD NDN P FTQ  
Sbjct: 579 IHNSSGWITVCAELDREEVEHYRFGVEAMDHGSPVMSSSASVAITVLDVNDNDPVFTQPV 638

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE---TNALLDGST 114
           Y   ++E A +G+ VLT       ++A D+D+    T  L  G+T
Sbjct: 639 YELRLNEDATVGSSVLT-------LQARDRDANSVITYQLTSGNT 676



 Score = 38.5 bits (88), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTAT----NMAGAKAVCSVIVHILDRNDNTPYFTQ 70
           + P  GV+ T+  +D E    Y L V A     N     A  +V + + D NDN P F++
Sbjct: 354 IDPRSGVVRTRSVVDREEVAEYQLLVEANDQGRNPGPRSATATVRILVEDENDNYPQFSE 413

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E       V  NT + L ++A D+D   NA L
Sbjct: 414 KRYVVRVPED------VAVNTPI-LWVQATDRDQGQNAAL 446


>gi|149017350|gb|EDL76401.1| rCG49295, isoform CRA_ak [Rattus norvegicus]
          Length = 823

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 179 SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 237

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 238 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 268



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 79  LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 138

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 139 SAPAGMVLIQLNASDP 154



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 292 LVTAGPLDREARSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 350

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 351 ENNRPGDLLCS-------LAASDPDSGLNALI 375


>gi|119582334|gb|EAW61930.1| hCG1982215, isoform CRA_i [Homo sapiens]
          Length = 931

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  ++Y++ V A + AG  A   V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E    YN+++TA +  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y+ E  P GA + +       +RA D DS  NA +
Sbjct: 460 YIPENNPRGASIFS-------VRAHDLDSNENAQI 487



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D   N 
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275


>gi|402872852|ref|XP_003919612.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-C4 [Papio
           anubis]
          Length = 868

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|18087749|ref|NP_291060.1| protocadherin gamma-C4 [Mus musculus]
 gi|13876362|gb|AAK26101.1| protocadherin gamma C4 [Mus musculus]
 gi|40673932|gb|AAH64808.1| Protocadherin gamma subfamily C, 4 [Mus musculus]
 gi|148678188|gb|EDL10135.1| mCG133388, isoform CRA_r [Mus musculus]
          Length = 941

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 297 SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 355

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 356 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 386



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 197 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 256

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 257 SAPAGMVLIQLNASDP 272



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 410 LVTAGPLDREARSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 468

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 469 ENNRPGDLLCS-------LAASDPDSGLNALI 493


>gi|397518020|ref|XP_003829197.1| PREDICTED: protocadherin beta-1 [Pan paniscus]
          Length = 818

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
           P Y  L+  KPLD E     NL++TA +        +  +H+  LD ND+ P F++L Y 
Sbjct: 189 PKYAELVLNKPLDREKQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 9   AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           AILK   + P  G +  + PLD+EA   Y++ + AT+  G  A   V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPP 345


>gi|11128025|ref|NP_061751.1| protocadherin gamma-C4 isoform 1 precursor [Homo sapiens]
 gi|37999827|sp|Q9Y5F7.1|PCDGL_HUMAN RecName: Full=Protocadherin gamma-C4; Short=PCDH-gamma-C4; Flags:
           Precursor
 gi|62510856|sp|Q5DRA3.1|PCDGL_PANTR RecName: Full=Protocadherin gamma-C4; Short=PCDH-gamma-C4; Flags:
           Precursor
 gi|5456982|gb|AAD43732.1| protocadherin gamma C4 [Homo sapiens]
 gi|119582353|gb|EAW61949.1| hCG1982215, isoform CRA_ab [Homo sapiens]
          Length = 938

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|334311087|ref|XP_001377790.2| PREDICTED: protocadherin gamma-A4-like [Monodelphis domestica]
          Length = 821

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE    Y++ + A + AG  A+  V+V ILD NDNTP  T  + T  +SE + +G+++
Sbjct: 308 LDYEECNFYDIDIEARDGAGLLAIAKVLVTILDVNDNTPDVTITSVTSSISENSSVGSMI 367

Query: 88  LTNTSLPLVIRAEDKDSETNA 108
                   +    DKDS  N 
Sbjct: 368 -------ALFNVHDKDSGENG 381



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T K LD E   +YN++V AT+           + +HI D NDN P F Q  Y+ Y
Sbjct: 402 YYSLVTNKALDREQVSMYNITVRATDRGNPPLSTDTHISLHIEDINDNPPAFIQTVYSAY 461

Query: 77  VSEAAPIGALVLTNTS 92
           + E  P G  + + T+
Sbjct: 462 IMENNPRGTSIYSLTA 477



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPY 67
           + K A    Y  L+  + LD E   +++L ++A++           V+V ++D NDN P 
Sbjct: 183 VEKRADGGKYLELVLDRALDREEEPVHHLILSASDRGDPILSGTLRVLVTVMDANDNAPE 242

Query: 68  FTQLNYTGYVSEAAPIGALVLT 89
           FTQ  Y+  V E  P G  +LT
Sbjct: 243 FTQSVYSVNVLENLPQGTQLLT 264


>gi|119514230|gb|ABL75893.1| protocadherin 2G18 [Takifugu rubripes]
          Length = 967

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV-IVHIL--DRNDNTPYFTQLNYTG 75
           Y +L+T  PLD E    YN+++TAT+ AG+  + SV I+ I+  D NDN P FTQ  Y  
Sbjct: 409 YYMLVTDGPLDREFQSEYNITITATD-AGSPPLASVKILKIVVNDINDNPPTFTQREYDA 467

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P+G  V+        I+A D D  +NA
Sbjct: 468 NILENQPVGTFVMK-------IQAVDVDDGSNA 493



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
            DYE    + L V A +  G  + C +I+ ++D NDN P     + +  V+E +P G +V
Sbjct: 315 FDYEEANTHELDVQAKDGGGQASHCKLIIDVMDVNDNKPVIEIKSASANVAEDSPAGTMV 374



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTP-YFTQLNYTGY 76
           G L T +  DYE +  + + VT  +    +  + C+V V I D+NDN P     +  +G+
Sbjct: 518 GALFTSRLFDYEQSVHFQIKVTVHDGGSPQLSSTCTVNVFIKDQNDNAPVVLYPVQTSGF 577

Query: 77  VSE-----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           ++E      AP G LV         + A D DS  NA L
Sbjct: 578 IAEDMVPFEAPRGYLVTK-------VVAVDADSGHNAWL 609



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ KK LD E    + L +   +          SV V +LD NDN P F+Q  Y  +
Sbjct: 199 YPELVLKKALDRETQAEHVLRINGIDGGSPARSGTASVHVRVLDANDNVPVFSQRVYKAF 258

Query: 77  VSEAAPIGALV 87
           V E +  G ++
Sbjct: 259 VMENSARGTVI 269


>gi|403255734|ref|XP_003920566.1| PREDICTED: protocadherin gamma-C4-like isoform 2 [Saimiri
           boliviensis boliviensis]
          Length = 938

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|334311079|ref|XP_003339578.1| PREDICTED: protocadherin beta-1-like [Monodelphis domestica]
          Length = 790

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           + P  G +   KPLD+E T  Y LSV AT+  G  + C V+V ++D NDN P  T  + +
Sbjct: 294 IDPLTGEIRISKPLDFETTEYYELSVRATDGGGLSSHCKVLVEVMDVNDNPPEVTVTSIS 353

Query: 75  GYVSEAAPIGALV 87
             + E +  G +V
Sbjct: 354 TLLPEDSLTGTVV 366



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF 68
           LKP     Y  L+T   LD E    YN++VTA ++      A  +V V ILD NDN P F
Sbjct: 394 LKPTFSNYYE-LVTDAALDRERVSSYNVTVTAIDLGSPPLSASETVTVQILDINDNLPLF 452

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVI---RAEDKDSETNA 108
            Q +YT YV+E          N S  L+I    A D DS  NA
Sbjct: 453 NQSSYTMYVTE----------NNSPSLMIGGVNATDSDSGQNA 485



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  +L  K LD E    +   +TA +  +       S+ + +LD NDN P F+Q  Y   
Sbjct: 191 YPEMLLAKSLDREEQPEFEFLLTAVDGGIPPRTGTASIRIIVLDANDNAPVFSQSLYRAT 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V+E +P G++V T       I A D D  +N 
Sbjct: 251 VAENSPAGSVVST-------IFAADSDQGSNG 275



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTP--YFTQLNYTG 75
           G +   K LDYE  + + ++V A++        +V ++  I+D NDN P   +   NY+ 
Sbjct: 512 GQVYILKTLDYEEIKDFKVTVKASDSGSPSLSTNVTIYVVIVDENDNAPVILYPMRNYSA 571

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             SE  P  A       L   + A DKDS  N+ L
Sbjct: 572 SYSELVPRAA---EEGYLVTKVVAVDKDSGQNSWL 603


>gi|297295324|ref|XP_002804588.1| PREDICTED: protein dachsous-like [Macaca mulatta]
          Length = 2233

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
            LLT +PLD EAT  Y + + A++ AG+  +    ++ ++I D NDN P+F Q  YT Y+ 
Sbjct: 1695 LLTSQPLDREATSHYTIELLASD-AGSPPLHKHLTIRLNISDVNDNAPHFNQQLYTAYIL 1753

Query: 79   EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E  P G+L+ T       + A D D+  NA L
Sbjct: 1754 ENRPPGSLLCT-------VAASDPDTGDNARL 1778



 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
            +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 1151 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 1209

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 1210 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 1240



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G+L  K  LD+E T+++ + + A +   +   A C V+V ++D NDN P  T  +    V
Sbjct: 302 GMLTIKGRLDFEDTKLHEIYIQAKDKGASPEGAHCKVLVEVVDVNDNAPEITVTSVYSPV 361

Query: 78  SEAAPIGALV 87
            E AP+G ++
Sbjct: 362 PEDAPLGTVI 371



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            LL +KPLD E    Y L + A +           + V +LD NDN P F Q +Y   V E
Sbjct: 1051 LLLEKPLDREKQSDYRLVLIAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 1110

Query: 80   AAPIG-ALVLTNTSLP 94
            +AP G  L+  N S P
Sbjct: 1111 SAPAGMVLIQLNASDP 1126



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 12/110 (10%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILD 60
            P  L   LK A    +  L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D
Sbjct: 1247 PDHLPFALKSAFRNQFS-LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISD 1304

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             NDN P F Q ++  +V E    G L+ +       + A D DS  NAL+
Sbjct: 1305 VNDNPPSFFQRSHEVFVPENNRPGDLLCS-------LAASDPDSGLNALI 1347



 Score = 41.2 bits (95), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 9/98 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
            +L+P  G +   +  DYE T+     V A +       +  +V V ILD NDN+P F   
Sbjct: 1366 SLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVQVEILDLNDNSPSFATH 1425

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
                 +SE+A  GA        PL   A+D D  TN +
Sbjct: 1426 EREMRISESAAPGA------RFPL-DSAQDPDVGTNTV 1456



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTG 75
            P+  L+ ++ LD EA   + L +TA +    A++  ++I V +LD NDN P F       
Sbjct: 1479 PFPELVLEQQLDREAQTRHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRV 1538

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             + E APIG L+L        + A D D  TN  LD
Sbjct: 1539 GIPENAPIGTLLLR-------LNATDPDEGTNGQLD 1567



 Score = 38.9 bits (89), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L T   LD E    YNLS+TA +       A+  V V + D NDN P  +Q +Y  Y
Sbjct: 406 YFTLKTSADLDRETVPEYNLSITARDAGTPSLSALTIVRVQVSDINDNPPQSSQSSYDVY 465

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E    GA +L        +   D D+  NA L
Sbjct: 466 IEENNLPGAPILN-------LSVWDPDAPQNARL 492



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E      L +TA +        S+ +HI  LD NDN P F Q  Y   
Sbjct: 193 YAELVLERALDREREPSLQLVLTALDGGTPALSASLPIHITVLDANDNAPVFNQSLYRAR 252

Query: 77  VSEAAPIGALVL 88
           V E AP G  V+
Sbjct: 253 VLEDAPSGTRVV 264



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
             L P  G +    P+D+E +  Y +   A +      +  C + V + D NDN P     
Sbjct: 1583 GLDPSSGAIHVLGPIDFEESSFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLA 1642

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +    V E+ P+G +V        +    D+DS  N 
Sbjct: 1643 SLANPVLESTPVGTVV-------GLFNVRDRDSGRNG 1672


>gi|62339322|ref|NP_001014780.1| protocadherin beta 6 precursor [Rattus norvegicus]
          Length = 772

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 17  PPY------GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
           PP+      G +  K  LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T 
Sbjct: 289 PPFVIDEISGEIRLKGALDFEATPYYNMEIVATDSGGLSGKCTVAIQVVDVNDNAPKLTI 348

Query: 71  LNYTGYVSEAAPIGALVLTNTSLP 94
            + T  + E AP   + + + S P
Sbjct: 349 SSLTRSIPENAPEAVVAVFSVSDP 372



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP  +  Y  L+T+ PLD E+   YN+++T +++   +     ++ V ++D NDN P 
Sbjct: 391 LLKPT-YENYYTLVTEGPLDRESRAEYNITITVSDLGTPRLTTQHTITVQVMDINDNAPV 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 450 FTQTSYTMFVHENNSPALHIG-----------TISATDSDSGSNA 483



 Score = 34.7 bits (78), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F +  Y  
Sbjct: 191 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPQFVKSLYAV 249

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 250 EVPEDSPLNALVVT 263


>gi|127139226|ref|NP_001076023.1| protocadherin gamma-C4 [Pan troglodytes]
          Length = 938

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|348514347|ref|XP_003444702.1| PREDICTED: protocadherin alpha-8-like [Oreochromis niloticus]
          Length = 687

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           L P+L      L+TK PLD E    Y L++TA + AG   + S   + V + D NDN+P 
Sbjct: 398 LSPSLQDKMYSLVTKVPLDREKQSQYELTITAKD-AGQPQLSSEKTISVTVSDVNDNSPE 456

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           F+   YT YV+E    GA V +       ++A D+D   NA +
Sbjct: 457 FSLSPYTFYVTEGNNPGASVFS-------VKASDRDENDNARI 492



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 6/72 (8%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGY 76
           +L+ +K LD EA   ++L++TA  + G K   S    +++++LD NDN P F+Q  Y+  
Sbjct: 194 ILIVQKSLDREAAGTHSLALTA--LDGGKPAKSGEMTILIYVLDINDNAPVFSQDVYSVT 251

Query: 77  VSEAAPIGALVL 88
           ++E AP+G +++
Sbjct: 252 LNENAPVGTVIV 263



 Score = 34.7 bits (78), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           ++P  G +  K  +DYE    Y + + A++  +A      SV + I+D NDN P     +
Sbjct: 296 INPVTGEITVKGQIDYEEKDKYEIEIQASDKGLAPLSTQKSVNIKIVDENDNAPEIEVTS 355

Query: 73  YTGYVSEAAPIGALV 87
           ++  + E +  G  V
Sbjct: 356 FSSSIPEDSRPGTTV 370


>gi|348507435|ref|XP_003441261.1| PREDICTED: cadherin-23-like [Oreochromis niloticus]
          Length = 3464

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 11/100 (11%)

Query: 15   LHPPYGVLLTKK--PLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQ 70
            + P  G L  +K   LD E T  YN++VTA ++       SV+V  ++LD NDN P    
Sbjct: 1893 VSPVEGELRVRKDVELDRETTAFYNITVTARDLGTPSRNSSVLVGVYVLDINDNDPVLLN 1952

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            L Y   VSE A I      +TS+  V RA+D DS  NALL
Sbjct: 1953 LPYNTSVSEGASI------HTSVARV-RAQDADSGRNALL 1985



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++ +  LDYE  R + L+V A +  G +    V V++LD NDN P F +  Y G + E
Sbjct: 613 GWVVLQASLDYELMRRFTLTVLAKDGGGEETTGRVRVNVLDVNDNAPLFQKEAYVGSLRE 672

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  V         IRA D+DS  N +L
Sbjct: 673 NEQTVQSVAR-------IRATDEDSPPNNVL 696



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-----VIVHILDRNDNTPYFTQLNYT 74
            GV+   +PLD E    Y L++T  +      +       +++ ILD NDN P FT+ +Y 
Sbjct: 2005 GVVQVNRPLDRERVAEYTLTITVRDNPENPRIARRDSDFLVITILDENDNRPVFTRTSYR 2064

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              ++E +  G  V   T L   + AEDKD   NA++
Sbjct: 2065 AEITENSAAGTTV---TVLNGPVLAEDKDIGRNAVV 2097



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 15/97 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM------AGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           G L  + PL Y A   ++L+V AT +      + A  V +  + ++D+NDN P F    Y
Sbjct: 399 GQLDRENPL-YSAG--FSLTVRATELNDDRSPSRATVVTTFTILLIDKNDNAPKFNSSEY 455

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              ++E A +G       +LPL I+AEDKD   N++ 
Sbjct: 456 RVRITELAQVGF------ALPLFIQAEDKDEGVNSMF 486



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 7   LFAILKP----ALHPPYGVLLTKKPLDYEATRIYNLSVTATN---MAGAKAVCSVIVHIL 59
           LF+   P    A+    G +   + LDYE T  Y L+V AT+   M     +  + + I 
Sbjct: 270 LFSFQPPSAFFAIDGARGTVTVTRALDYETTTAYQLTVNATDQDKMRPLSRLAGLAITIT 329

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIG 84
           D  D  P FT L Y+  + E  P+G
Sbjct: 330 DIQDMDPIFTNLPYSTNIEEDVPLG 354



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 22/117 (18%)

Query: 7    LFAIL---------KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA------KAV 51
            LFA++         K  + P  G +    PLD E    Y L+  A +  G       +  
Sbjct: 2532 LFAVIEYSLVDGEGKFGIRPSTGEIYILSPLDRETKDHYTLTAVARDNPGGSPNNRRENS 2591

Query: 52   CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              V+V +LD ND  P F++  Y   V E  P G  V+T       I+A D D   NA
Sbjct: 2592 VQVLVTVLDINDYRPRFSERVYNTSVFENEPSGTSVIT-------IKATDLDEGENA 2641



 Score = 38.9 bits (89), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 26   KPLDYEATRIYNLSVTATNM--AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY-VSEAAP 82
            + LD E +  + L V A N      ++   VI+++ D ND  P FTQ  Y    + E A 
Sbjct: 1263 RALDRETSSSHMLEVEAYNSDEGSMRSSVRVIIYVDDANDEVPVFTQQQYNRLGLRETAG 1322

Query: 83   IGALVLTNTSLPLVIRAEDKDS 104
            IG  V       +V+RA D+D+
Sbjct: 1323 IGTSV-------IVVRATDRDT 1337



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYT 74
            P  G ++  + +D+E  +  N ++ A +      +    V + I+D NDN P F Q +Y 
Sbjct: 2448 PSVGKIVANQTVDFEQVQWLNFTIRAQDHGTPPRIAELPVYLRIVDVNDNNPVFVQPSYQ 2507

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
              V E   +G  ++        +RA D DS   A+++
Sbjct: 2508 EPVFENVDLGTTIVR-------VRATDADSGLFAVIE 2537



 Score = 38.5 bits (88), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 48   AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            A A  +V V++LD NDN P F  L     V E  PIG+           I+ ED D + N
Sbjct: 970  ASASTTVFVNLLDLNDNDPTFLNLPSVAEVPEGLPIGSSFFR-------IQVEDPDEDKN 1022

Query: 108  ALL 110
             L+
Sbjct: 1023 GLI 1025



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM--AGAK--AVCSVIVHILDRNDNTPYFTQLNYTG 75
            G++ T   LD E    Y L + A +   AG++     +V V + D NDN P F Q +Y  
Sbjct: 1150 GIVRTVVGLDRETQAAYTLIIEAIDNGPAGSRRTGTATVFVEVQDVNDNRPIFLQNSYET 1209

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E+ P G  +L        ++A D D   N 
Sbjct: 1210 SILESVPRGTSILQ-------VQATDADQGENG 1235



 Score = 38.1 bits (87), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 16/110 (14%)

Query: 5    VQLFAILKPALHPPYGVLLTKK--PLDYEATR--IYNLSVTATNMAGAKAVCSVIVHILD 60
            V LFA+         GV+L ++   LD EA +     L + A ++ G      + V ILD
Sbjct: 2106 VDLFAV-----DADTGVILVRQGAKLDREAFQEPRVELFLVAEDIGGLNNSVPLTVTILD 2160

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +NDN P F+  +++  + E +P G +V         + A D DS +N  L
Sbjct: 2161 QNDNPPVFSPSSFSVRLPENSPTGVVVTQ-------LSATDADSGSNGWL 2203



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFT-QLNYTGYVSEAAPIGA 85
            LD E   +Y L+V A +    K +   V + ILD NDN+P F    +Y+  ++E  P G 
Sbjct: 1476 LDREKGDMYTLTVVADDGGPKKDSTVKVSITILDENDNSPEFDITSDYSVAIAENTPKGK 1535

Query: 86   LVLTNTSLPLVIRAEDKDSETNALLD 111
             V        V+   D+D+  N L++
Sbjct: 1536 KV-------AVVLGRDRDAGLNGLIN 1554



 Score = 36.2 bits (82), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYF-TQLNYTG 75
            YG +    PLD E+   Y L V AT+          S+ ++ILD NDN P   +Q  Y  
Sbjct: 1575 YGEVYVNAPLDRESVDRYLLKVRATDNGSPPRPTDHSLTINILDVNDNAPVVESQRGYNV 1634

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             VSE    G  V+        + A D+D   NA+L
Sbjct: 1635 SVSENVGGGTSVVR-------VMATDRDIGPNAML 1662



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 19  YGVLLTKKPLDYEAT---RIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLN 72
           Y V+   +PLDYE      IY L+V A +  G  A+ S   V V ++D NDN P F++ +
Sbjct: 718 YAVISVIRPLDYEMVPKGMIY-LTVMAKD-GGNPALNSTVPVTVEVIDENDNPPEFSKQS 775

Query: 73  YTGYVSEAAPIGALVL 88
           Y   + E    GA VL
Sbjct: 776 YIIKIPENIIAGATVL 791



 Score = 34.3 bits (77), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 17/100 (17%)

Query: 20   GVLLTKKPLDYEATRI-YNLSVTATNMAGAKAV-----CSVIVHILDRNDNTPYFTQLNY 73
            G +   K LD+E +   Y L VTAT+     A+      +V+V++LD ND TP F +  Y
Sbjct: 1789 GRITAVKELDFEISNGHYALVVTATDQCPKPALRLTSSTTVLVNVLDINDVTPTFPRA-Y 1847

Query: 74   TG--YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             G   V+E  P G  V T       +RA D+DS  N  ++
Sbjct: 1848 EGPFEVTEGQP-GPRVWT-------LRARDEDSGLNGKVE 1879


>gi|216548385|ref|NP_001136024.1| protocadherin-23 isoform 2 [Homo sapiens]
          Length = 1369

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
            K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 922  KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 979

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 980  LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 1014



 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN 64
           FA+L P   P    L  + PLD E+  +Y L + AT+ AG+  + +   +++ + D ND 
Sbjct: 478 FALL-PGGPPGVFFLCVEGPLDRESRDLYELLLVATD-AGSPPLSTEETLLLRVADLNDQ 535

Query: 65  TPYFTQLNYTGYVSEAAPIGALVL 88
            P F+Q +Y   VSEAA  G +V+
Sbjct: 536 PPLFSQQHYKASVSEAAAPGTVVM 559



 Score = 39.3 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+    G + T + LD E      L V A ++      A C V + + D NDN P F + 
Sbjct: 607 AIDSESGAISTIRTLDREVQEAVELKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQ 666

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   ++E AP+G   L  T       A D DS
Sbjct: 667 VYNATIAEHAPVGHCFLQVT-------ASDADS 692


>gi|62088030|dbj|BAD92462.1| protocadherin beta 11 precursor variant [Homo sapiens]
          Length = 799

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+T  YN+++T T++     K   +  V + 
Sbjct: 386 SIPEDLPFVLKSSVEN-YHTLETERPLDRESTAEYNITITVTDLGIPRLKTEHNTTVLVS 444

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 445 DVNDNAPTFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 486



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  + PLD+E    Y++ + AT+  G     +VI+H++D NDN P  T  + T  + E
Sbjct: 301 GEITLRAPLDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPE 360

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P         ++ +V   +D DS  N 
Sbjct: 361 NTP--------ETVVMVFSIQDIDSGDNG 381



 Score = 38.1 bits (87), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  K LDYE   +  LS   + + G          V V ++D NDN+P F Q  Y 
Sbjct: 193 YPELVLDKALDYE--ELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 250

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + +G+L+       L++ A D DS TN 
Sbjct: 251 VKIRENSILGSLI-------LIVSAWDLDSGTNG 277



 Score = 35.8 bits (81), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + ++  V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 513 GHLFALRSLDYEALQAFDFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 562


>gi|5457025|gb|AAD43749.1|AF152488_1 protocadherin beta 1 [Homo sapiens]
          Length = 818

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
           P Y  L+  KPLD E     NL++TA +        +  +H+  LD ND+ P F++L Y 
Sbjct: 189 PKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 9   AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           AILK   + P  G +  + PLD+EA   Y++ + AT+  G  A   V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPP 345


>gi|14195607|ref|NP_037472.2| protocadherin beta-1 precursor [Homo sapiens]
 gi|205371811|sp|Q9Y5F3.2|PCDB1_HUMAN RecName: Full=Protocadherin beta-1; Short=PCDH-beta-1; Flags:
           Precursor
 gi|85567189|gb|AAI12099.1| Protocadherin beta 1, precursor [Homo sapiens]
 gi|85567546|gb|AAI12097.1| Protocadherin beta 1, precursor [Homo sapiens]
 gi|119582389|gb|EAW61985.1| protocadherin beta 1 [Homo sapiens]
          Length = 818

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
           P Y  L+  KPLD E     NL++TA +        +  +H+  LD ND+ P F++L Y 
Sbjct: 189 PKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 9   AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           AILK   + P  G +  + PLD+EA   Y++ + AT+  G  A   V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPP 345


>gi|410900464|ref|XP_003963716.1| PREDICTED: LOW QUALITY PROTEIN: cadherin-23-like [Takifugu rubripes]
          Length = 3370

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 11/100 (11%)

Query: 15   LHPPYGVLLTKK--PLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQ 70
            + P  G L  +K   LD E T  YN++VTA ++       SV+V  H+ D NDN P    
Sbjct: 1799 ISPVEGELRVRKDVELDRETTAFYNITVTARDLGTPSRNSSVVVGVHVRDINDNDPVLLN 1858

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            L +   V E API      +TS+  V +AED DS  NALL
Sbjct: 1859 LPHNTSVREGAPI------HTSVARV-QAEDADSGRNALL 1891



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +L    G ++ +  LDYE  R + L+V A +  G +    + V++LD NDN P F +  Y
Sbjct: 511 SLDEETGWVILRASLDYELMRRFTLTVLAKDGGGEETTGRIRVNVLDVNDNGPLFQKEAY 570

Query: 74  TGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            G + E      P+             +RA D+DS  N  L
Sbjct: 571 VGSLRENEQAVQPVAR-----------VRATDEDSPPNNFL 600



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 15/97 (15%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNM------AGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           G L  + PL Y A   + L+V AT +      + A  + +  + ++D+NDN P F    Y
Sbjct: 303 GQLDRENPL-YSAG--FTLTVKATELRADRFPSDATVMTTFTILLIDKNDNAPKFNSSEY 359

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              ++E A +G       +LPL I+AEDKD   N++ 
Sbjct: 360 RVRITELAQVGF------ALPLFIQAEDKDEGVNSMF 390



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)

Query: 7   LFAILKPA----LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHIL 59
           LF+   P+    +    G +   KPLDYE T  Y L+V AT+    +    + ++ + I 
Sbjct: 174 LFSFQPPSSFFTIDGARGTVTVTKPLDYETTSAYQLTVNATDQDKLRPLSRLANLAISIT 233

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIG 84
           D  D  P FT L Y+  + E  P+G
Sbjct: 234 DVQDMDPIFTNLPYSTNIEEDVPLG 258



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 13/103 (12%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA------KAVCSVIVHILDRNDNT 65
            K A+ P  G +    PLD E    Y L+  A +  G+      +    V+V +LD ND  
Sbjct: 2452 KFAIKPSTGEIYILSPLDRETKDHYTLTAVARDNPGSSPNNRRENSVQVLVTVLDVNDYR 2511

Query: 66   PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            P FT+  Y   V E  P G  V+T       +RA D D   N 
Sbjct: 2512 PRFTERVYNTSVFENEPSGTSVIT-------VRATDLDEGENG 2547



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 8/96 (8%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS-----VIVHILDRNDNTPYFTQLNYT 74
            GV+   +PLD E    Y L++T  +      +       +++ ILD NDN P FT+  Y 
Sbjct: 1911 GVVQVNRPLDRERVAEYRLTITVKDNPENSRIARRDSDLLVIAILDENDNRPVFTRTTYR 1970

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E +  G  V   T L   + A+D D   NA++
Sbjct: 1971 AEIMENSLAGNTV---TVLNGPVLAKDNDIGPNAVV 2003



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 5    VQLFAILKPALHPPYGVLLTK--KPLDYEATR--IYNLSVTATNMAGAKAVCSVIVHILD 60
            V LF +      P  GV+L +    LD EA +     L + A ++ G  +   + V ILD
Sbjct: 2012 VDLFTV-----DPNTGVILVRPGSRLDREAFQEPRVELFLVAEDIGGLNSSVPLTVAILD 2066

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             NDN P F+  +Y+  + E +P G +V         + A D DS +N  L
Sbjct: 2067 ENDNPPVFSPSSYSVRLPENSPTGVVVTQ-------LSATDADSGSNGWL 2109



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 26   KPLDYEATRIYNLSVTATNM--AGAKAVCSVIVHILDRNDNTPYFTQLNYTGY-VSEAAP 82
            +PLD E +  + L V A N      ++   VI+++ D ND  P FTQ  Y    + E A 
Sbjct: 1169 RPLDRETSNSHVLEVEAYNSDEGNMRSSVRVIIYVNDANDEVPVFTQQQYNRLGLRETAG 1228

Query: 83   IGALVLTNTSLPLVIRAEDKDS 104
            IG  V       +V+RA D D+
Sbjct: 1229 IGTSV-------IVVRATDPDT 1243



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 16/105 (15%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNM--AGAK--AVCSVIVHILDRNDNTPYFTQLNYTG 75
            G++ T   LD E    Y L V A +   AG++     +V V + D NDN P F Q +Y  
Sbjct: 1055 GIVRTVVRLDRETQAAYTLIVEAIDNGPAGSRRTGTATVFVEVQDVNDNRPIFLQNSYET 1114

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDGSTN 115
             + E+ P G  +L        ++A D D   N      +L G++N
Sbjct: 1115 GILESVPQGTSILQ-------VQATDADQGENGRVLYRILTGNSN 1152



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 19  YGVLLTKKPLDYEA--TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNY 73
           Y V+   +PLDYE     + +L+V A +  G  A+ S +   V ++D NDN P F++ +Y
Sbjct: 622 YAVISVTRPLDYEQVPNGMIHLTVMAKD-GGIPALNSTVPITVEVIDENDNPPEFSKSSY 680

Query: 74  TGYVSEAAPIGALVL 88
              + E    GA VL
Sbjct: 681 IVKILENINAGATVL 695



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 17   PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYT 74
            P  G ++  + +D+E  +  N ++ A +      +    V + I+D NDN P F Q +Y 
Sbjct: 2354 PSTGKIIANQTVDFEQVQWLNFTIRAQDHGSPPRIAELPVFLRIVDVNDNNPVFLQPSYQ 2413

Query: 75   GYVSEAAPIGALVL 88
              V E   +G  ++
Sbjct: 2414 EPVFENVDLGTTIV 2427



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 9/86 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGY-VSEAAPIGA 85
            LD E   +Y L+V A +    K +   V + ILD NDN+P F   + T   ++E  P+G 
Sbjct: 1382 LDREKGDLYTLTVVADDGGPKKDSTVKVSITILDENDNSPVFDITSDTSVDITEKTPMGE 1441

Query: 86   LVLTNTSLPLVIRAEDKDSETNALLD 111
             V        V+ A D D+  N L++
Sbjct: 1442 KV-------AVVLARDIDAGLNGLIN 1460



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 20   GVLLTK-KPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
            G ++T+  P D E  + Y L+VT  +  G   + S   + VHI+D NDN P F +  Y  
Sbjct: 1588 GEMVTRPAPPDRERQQEYILNVTVED-DGTPPLSSPTTIYVHIVDENDNAPEFPEEEYVT 1646

Query: 76   YVSEAAP-IGALVLTNTSL 93
             +SE    +GA + T T++
Sbjct: 1647 VLSEGPDTVGATIATVTAI 1665



 Score = 35.4 bits (80), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 48  AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
           A A  +V V++LD NDN P F  L +   V E        L N S    ++ ED D + N
Sbjct: 875 ATASTTVFVNLLDLNDNDPKFLNLPFVAEVPEG-------LLNGSAVFKVQVEDPDHDKN 927

Query: 108 ALL 110
            L+
Sbjct: 928 GLI 930



 Score = 35.0 bits (79), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 27  PLDYEATRIYNLSVTAT-NMAGAKAVCSVIVHILDRNDNTPYFTQ 70
           PLDYE  R Y+ S+ A  +M+       V + +++ NDN P F++
Sbjct: 422 PLDYEHIRSYSFSLYANESMSDHVGFARVFIELINENDNRPIFSK 466


>gi|395504704|ref|XP_003756687.1| PREDICTED: protocadherin beta-2-like [Sarcophilus harrisii]
          Length = 797

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L    G L  K  +D+E+T+ Y +++ AT+  G  A C+VIV ++D NDN P  T  + T
Sbjct: 294 LKEELGELYLKGKVDFESTQSYTINIQATDGGGLSAECTVIVQVMDLNDNPPELTISSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E +P         ++  V R  D DS  N 
Sbjct: 354 SPIPENSP--------ETVVAVFRVSDLDSGENG 379



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 18/104 (17%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF 68
           LKP++   Y  L+T+  LD E    YN+++T  ++     K+  ++ V I D NDN+P F
Sbjct: 393 LKPSIEN-YYTLVTEGALDREYKDEYNITITVIDLGSPRLKSEYNLTVLISDVNDNSPVF 451

Query: 69  TQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           TQ  Y  Y+ E    A  IG+           + A D+DS  NA
Sbjct: 452 TQRTYKLYLQENNGPALHIGS-----------VSASDRDSGINA 484



 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +  +        V + ++D NDN P F QL Y   
Sbjct: 191 YPELVLDKTLDREEKSEVTLTLTAVDGGVPPRSGTAQVRILVVDINDNAPVFAQLRYEVQ 250

Query: 77  VSEAAPIGALVLT 89
           + E + IG+ V+T
Sbjct: 251 IPENSSIGSKVVT 263


>gi|297676208|ref|XP_002816033.1| PREDICTED: protocadherin beta-1 [Pongo abelii]
          Length = 818

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
           P Y  L+  KPLD E     NL++TA +        +  +H+  LD ND+ P F++L Y 
Sbjct: 189 PKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 9   AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           AILK   + P  G +  + PLD+EA   Y++ + AT+  G  A   V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPP 345


>gi|260784873|ref|XP_002587488.1| hypothetical protein BRAFLDRAFT_99379 [Branchiostoma floridae]
 gi|229272636|gb|EEN43499.1| hypothetical protein BRAFLDRAFT_99379 [Branchiostoma floridae]
          Length = 1649

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 1    MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVI 55
            +  P Q F I         G + T++PLD E    ++  V AT  A       KA   V 
Sbjct: 934  LQSPQQDFTIDSST-----GTIRTQRPLDREEDANHDFIVVATESAVWFGFPRKAYAVVS 988

Query: 56   VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
            V +LD NDN P F +  YT +VSE AP G ++LT
Sbjct: 989  VQVLDVNDNAPEFGREAYTAHVSENAPDGDVILT 1022



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 19/106 (17%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFT 69
           A++   G + T   LDYE  + Y+L++ A +M G      A   + + + D NDN+P F+
Sbjct: 521 AVNSTAGQIYTTGTLDYETAQSYSLTIEARDMDGTFGFRSATARLTIELQDENDNSPQFS 580

Query: 70  QLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           Q ++   + E    +AP+G ++ T           D+DS  N  +D
Sbjct: 581 QEDFHFSIPEDSMGSAPVGTVLAT-----------DRDSAHNGKVD 615



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +     LD E   ++ + V AT+     +  +V +H+ D NDN+P FTQ +Y 
Sbjct: 1049 VDPETGAVRVNGSLDREVADMHLIVVQATDGGNLSSTVTVTIHVGDVNDNSPVFTQDHYN 1108

Query: 75   GYVSE 79
              V E
Sbjct: 1109 ISVPE 1113


>gi|444721941|gb|ELW62648.1| Protocadherin Fat 4 [Tupaia chinensis]
          Length = 2618

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
           A++   GVL   K LDYE  + + + ++AT+         CSV ++++D NDN+P F   
Sbjct: 811 AINSSTGVLTLAKALDYELCQKHEMIISATDGGWVARTGYCSVTINVIDVNDNSPVFLPD 870

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            Y   V E AP G  V+        + A D DS TNA++
Sbjct: 871 EYFPTVLENAPSGTTVIN-------LNATDADSGTNAVI 902



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 10/92 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
           G + + +PLD E    Y L+V +++        SV  I++ILD NDN P F+Q+ ++ +V
Sbjct: 396 GEIRSIRPLDREKVSHYVLTVRSSDKGSPSQSTSVKVIINILDENDNAPRFSQI-FSAHV 454

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            E  P+G  V   T+        D+D   NA+
Sbjct: 455 PENFPLGYTVTRVTT-------SDEDIGVNAI 479



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G ++  +PLD E T  Y + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 493 INPSTGDIIISRPLDREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 551

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               E   IG+ V         + A D D  +N 
Sbjct: 552 LDCPELTEIGSKVTQ-------VSATDPDEGSNG 578



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  ++ + +   N+  P F    
Sbjct: 916 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATINIQLKGTNEYVPRFVSKL 975

Query: 73  YTGYVSEAAPIGALV 87
           Y   +SEAAP G +V
Sbjct: 976 YYFEISEAAPKGTVV 990


>gi|395736294|ref|XP_003776730.1| PREDICTED: protocadherin gamma-A4 [Pongo abelii]
          Length = 820

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  LLT K LD E    YN++VTAT+           V + ++D NDN P F   +Y+ Y
Sbjct: 401 YYRLLTHKTLDREEVSEYNITVTATDQGTPPLSTETHVSLQVMDINDNPPTFPHASYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA +L+ T       A+D DS  NA +
Sbjct: 461 IPENNPRGASILSMT-------AQDPDSGDNARI 487



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE +  Y + V A +  G +A   V+V +LD NDN P  T  + T  V E +  G ++
Sbjct: 307 LDYEDSGFYYIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTNSVQETSSPGTVI 366

Query: 88  LTNTSLPLVIRAEDKDSETNALL 110
                   +    D DS  N L+
Sbjct: 367 -------ALFNVHDSDSGGNGLV 382



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ ++ LD E   +++L +TA +           +++ ++D NDN P FTQ  Y   
Sbjct: 191 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P+G  +LT       ++A D D   N 
Sbjct: 251 VRENVPVGTRLLT-------VKATDPDEGANG 275


>gi|380800259|gb|AFE72005.1| protocadherin gamma-C4 isoform 1 precursor, partial [Macaca
           mulatta]
          Length = 936

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 292 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 350

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 351 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 381



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 192 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 251

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 252 SAPAGMVLIQLNASDP 267



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 405 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 463

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 464 ENNRPGDLLCS-------LAASDPDSGLNALI 488


>gi|348582944|ref|XP_003477236.1| PREDICTED: protocadherin gamma-C4-like [Cavia porcellus]
          Length = 869

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 294 SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQASYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD E    Y++ VTA++ AG   + +   + ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDRETKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|345323234|ref|XP_003430691.1| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1-like
           [Ornithorhynchus anatinus]
          Length = 859

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+H   G +  +  LD EA   Y+  V A +       A  SV V +LD NDN P FTQ 
Sbjct: 407 AIHEGTGWITVRAELDREARERYSFGVEAVDHGAPALSASASVSVTVLDVNDNDPAFTQP 466

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
            Y   ++E A +G+ VLT       +RA D+D+ +
Sbjct: 467 AYELRLNEDAAVGSSVLT-------LRARDRDANS 494



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T +PLD EA   + L VTAT+ A     AV  + V + D ND+ P F Q  Y   V
Sbjct: 94  GRVTTARPLDREAKDTHVLKVTATDQARPPRSAVTYLTVTVGDTNDHRPVFEQAEYRETV 153

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            E   +G  VLT       +RA D D+  NA L
Sbjct: 154 RENLELGYEVLT-------VRASDGDAPANADL 179



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
           LH   G L    PLDYE  R Y L V A +      + S   V V +LD NDN P F   
Sbjct: 300 LHALTGALDVIHPLDYETVREYTLRVKAQDGGRPPLINSSGLVSVRVLDVNDNAPIFVSS 359

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +   V E AP G  VL        ++A D DS  NA L
Sbjct: 360 PFQASVLENAPPGHSVLH-------VQAVDADSGENARL 391



 Score = 38.5 bits (88), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFTQ 70
           + P  GV+ T+  +D E    + L V A +         A  +V + + D NDN P F++
Sbjct: 193 IDPRTGVVRTRAAVDREEAAEHRLLVEADDRGRDPGPLSATATVRIAVEDENDNYPQFSE 252

Query: 71  LNYTGYVSE-AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E  AP  A+        L +RA D+D   NA L
Sbjct: 253 GRYVVRVPEDVAPDTAV--------LRVRATDRDRGRNAAL 285



 Score = 35.0 bits (79), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G++    PLDY+  R + L+VTA++   ++    V +++ D N + P     NYT  VS+
Sbjct: 518 GLVTLALPLDYKQERQFVLAVTASDGTRSR-TAQVFINVTDANTHRPRHQSCNYTVSVSD 576

Query: 80  AAPIGALVLT 89
               G  + +
Sbjct: 577 DRHDGTFLFS 586


>gi|338713192|ref|XP_001504036.2| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-C4 [Equus
           caballus]
          Length = 871

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 294 SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIGALVLT-NTSLP 94
           +AP G L++  N S P
Sbjct: 254 SAPAGMLLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREARSSYDIMVTASD-AGNPPLSTQRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|344265070|ref|XP_003404610.1| PREDICTED: protocadherin beta-18-like [Loxodonta africana]
          Length = 796

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T++PLD E +  YN+S+T T++     K   ++ V I D NDNTP 
Sbjct: 393 LLKPTFKNFY-TLVTERPLDRETSTEYNISITVTDLGTPRLKTEHNITVLISDVNDNTPT 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+D  TN+
Sbjct: 452 FTQNSYTLFVRENDSPALQIGS-----------VSALDRDFGTNS 485



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +HP  G +  K  LD+E  + Y +++ A +        +++V ++D NDN P  T  + T
Sbjct: 294 IHPISGEVHLKALLDFELIQSYTINIQAIDGGSLSGKSAILVRVVDVNDNPPEITMTSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E +    +V        V R  DKD+  N 
Sbjct: 354 SPIPENSAPEFVV-------AVFRVRDKDTGDNG 380



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E     +L++TA +        + ++ +  LD NDN P F +  Y   
Sbjct: 191 YPELVLDHPLDREKEPELSLTLTAFDGGSPPRSGTALIRVVVLDVNDNAPQFERPVYEVQ 250

Query: 77  VSEAAPIGALVLTNTSLPL 95
           V E +P+ +LV+T T+  L
Sbjct: 251 VPEDSPLDSLVITVTATDL 269


>gi|344257356|gb|EGW13460.1| Protocadherin gamma-C4 [Cricetulus griseus]
          Length = 605

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 36  SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 94

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 95  TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 125



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 149 LVTAGPLDREARSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 207

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 208 ENNRPGDLLCS-------LAASDPDSGLNALI 232


>gi|332234725|ref|XP_003266555.1| PREDICTED: protocadherin beta-17-like [Nomascus leucogenys]
          Length = 796

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  LLT+  LD E+   YN ++T T++     K   ++ V + D NDN P 
Sbjct: 393 LLKPTLENFY-TLLTEGALDRESRAEYNFTITVTDLGTPRLKTEYNITVRVSDVNDNAPV 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 452 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 485



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
           G +  KK LD+E  + Y++ V A++  G    C+V + ++D NDN P  T
Sbjct: 300 GEIRLKKALDFEEIQSYHMEVEASDGGGLSGKCTVAIEVMDINDNAPELT 349



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +           V++ I+D NDN P F Q  Y   
Sbjct: 192 YPELVLDQALDREEQPQLRLTLTALDGGSPPRTGTSQVVIVIVDINDNVPEFAQRRYEVQ 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  PIG+LV+T       + A D D+ T+  L
Sbjct: 252 VPENTPIGSLVIT-------VSARDLDAGTHGEL 278



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 512 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 561


>gi|444525563|gb|ELV14089.1| Protocadherin gamma-C4 [Tupaia chinensis]
          Length = 865

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 294 SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKASYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  N+L+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNSLI 490


>gi|9256590|ref|NP_061731.1| protocadherin alpha-5 isoform 1 precursor [Homo sapiens]
 gi|13878428|sp|Q9Y5H7.1|PCDA5_HUMAN RecName: Full=Protocadherin alpha-5; Short=PCDH-alpha-5; Flags:
           Precursor
 gi|5456914|gb|AAD43707.1| protocadherin alpha 5 [Homo sapiens]
          Length = 936

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E+  +Y L VTA +       A  SV V + D NDN P F Q  YT +
Sbjct: 403 YYSLVLDSALDRESVSVYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVF 462

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 463 VKENNPPGCHIFT-------VSARDADAQENALV 489



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ +K LD E T+ + L V AT+    +   +V  ++++LD NDN P F +  Y   + E
Sbjct: 193 LVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAPEFDKSIYNVRLLE 252

Query: 80  AAPIGALVL 88
            AP G LV+
Sbjct: 253 NAPSGTLVI 261



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +     LDYE    Y +++ A + +       C V+V +LD NDNTP          V
Sbjct: 299 GEIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPV 358

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E AP+  ++        +I   D+DS  N 
Sbjct: 359 KEDAPLSTVI-------ALISVSDRDSGANG 382


>gi|74228343|dbj|BAE24021.1| unnamed protein product [Mus musculus]
          Length = 874

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 297 SLHPTTGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 355

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 356 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 386



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 197 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 256

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 257 SAPAGMVLIQLNASDP 272



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 410 LVTAGPLDREARSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 468

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 469 ENNRPGDLLCS-------LAASDPDSGLNALI 493


>gi|168277520|dbj|BAG10738.1| protocadherin beta 11 precursor [synthetic construct]
          Length = 797

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
           S P  L  +LK ++   Y  L T++PLD E+T  YN+++T T++     K   +  V + 
Sbjct: 384 SIPEDLPFVLKSSVEN-YHTLETERPLDRESTAEYNITITVTDLGIPRLKTEHNTTVLVS 442

Query: 60  DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           D NDN P FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 443 DVNDNAPTFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  + PLD+E    Y++ + AT+  G     +VI+H++D NDN P  T  + T  + E
Sbjct: 299 GEITLRAPLDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P         ++ +V   +D DS  N 
Sbjct: 359 NTP--------ETVVMVFSIQDIDSGDNG 379



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+  K LDYE   +  LS   + + G          V V ++D NDN+P F Q  Y 
Sbjct: 191 YPELVLDKALDYE--ELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + +G+L+       L++ A D DS TN 
Sbjct: 249 VKIRENSILGSLI-------LIVSAWDLDSGTNG 275



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + ++  V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFDFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560


>gi|119582419|gb|EAW62015.1| hCG1982192, isoform CRA_ad [Homo sapiens]
          Length = 936

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E+  +Y L VTA +       A  SV V + D NDN P F Q  YT +
Sbjct: 403 YYSLVLDSALDRESVSVYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVF 462

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 463 VKENNPPGCHIFT-------VSARDADAQENALV 489



 Score = 41.6 bits (96), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYVSE 79
           L+ +K LD E T+ + L V AT+    +   +V  ++++LD NDN P F +  Y   + E
Sbjct: 193 LVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAPEFDKSIYNVRLLE 252

Query: 80  AAPIGALVL 88
            AP G LV+
Sbjct: 253 NAPSGTLVI 261



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +     LDYE    Y +++ A + +       C V+V +LD NDNTP          V
Sbjct: 299 GEIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPV 358

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E AP+  ++        +I   D+DS  N 
Sbjct: 359 KEDAPLSTVI-------ALISVSDRDSGANG 382


>gi|187954583|gb|AAI40920.1| DCHS2 protein [Homo sapiens]
          Length = 1368

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
            K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 922  KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 979

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 980  LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 1014



 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN 64
           FA+L P   P    L  + PLD E+  +Y L + AT+ AG+  + +   +++ + D ND 
Sbjct: 478 FALL-PGGPPGVFFLCVEGPLDRESRDLYELLLVATD-AGSPPLSTEETLLLRVADLNDQ 535

Query: 65  TPYFTQLNYTGYVSEAAPIGALVL 88
            P F+Q +Y   VSEAA  G +V+
Sbjct: 536 PPLFSQQHYKASVSEAAAPGTVVM 559



 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+    GV+ T + LD E      L V A ++      A C V + + D NDN P F + 
Sbjct: 607 AIDSESGVISTIRALDREVQEAVELKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQ 666

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   ++E AP+G   L  T       A D DS
Sbjct: 667 VYNATIAEHAPVGHCFLQVT-------ASDADS 692


>gi|119625351|gb|EAX04946.1| dachsous 2 (Drosophila), isoform CRA_d [Homo sapiens]
          Length = 1366

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
            K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 922  KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 979

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 980  LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 1014



 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN 64
           FA+L P   P    L  + PLD E+  +Y L + AT+ AG+  + +   +++ + D ND 
Sbjct: 478 FALL-PGGPPGVFFLCVEGPLDRESRDLYELLLVATD-AGSPPLSTEETLLLRVADLNDQ 535

Query: 65  TPYFTQLNYTGYVSEAAPIGALVL 88
            P F+Q +Y   VSEAA  G +V+
Sbjct: 536 PPLFSQQHYKASVSEAAAPGTVVM 559



 Score = 39.3 bits (90), Expect = 0.35,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+    G + T + LD E      L V A ++      A C V + + D NDN P F + 
Sbjct: 607 AIDSESGAISTIRTLDREVQEAVELKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQ 666

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   ++E AP+G   L  T       A D DS
Sbjct: 667 VYNATIAEHAPVGHCFLQVT-------ASDADS 692


>gi|34534729|dbj|BAC87093.1| unnamed protein product [Homo sapiens]
          Length = 1366

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
            K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 922  KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 979

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 980  LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 1014



 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN 64
           FA+L P   P    L  + PLD E+  +Y L + AT+ AG+  + +   +++ + D ND 
Sbjct: 478 FALL-PGGPPGVFFLCVEGPLDRESRDLYELLLVATD-AGSPPLSTEETLLLRVADLNDQ 535

Query: 65  TPYFTQLNYTGYVSEAAPIGALVL 88
            P F+Q +Y   VSEAA  G +V+
Sbjct: 536 PPLFSQQHYKASVSEAAAPGTVVM 559



 Score = 40.8 bits (94), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+    GV+ T + LD E      L V A ++      A C V + + D NDN P F + 
Sbjct: 607 AIDSESGVISTIRALDREVQEAVELKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQ 666

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   ++E AP+G   L  T       A D DS
Sbjct: 667 VYNATIAEHAPVGHCFLQVT-------ASDADS 692


>gi|426350421|ref|XP_004042772.1| PREDICTED: protocadherin gamma-A1 [Gorilla gorilla gorilla]
          Length = 761

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  ++Y++ V A + AG  A   V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKAKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E    YN+++TA +           + +L  D NDN+P F Q +Y+ Y
Sbjct: 401 YYCLVTERTLDRELISGYNITITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + +       +RA D DS  NA +
Sbjct: 461 IPENNPRGASIFS-------VRAHDLDSNENAQI 487



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQNPLDREEAAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D   N 
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNAADPDEGANG 275


>gi|390459338|ref|XP_003732280.1| PREDICTED: protocadherin gamma-C4-like [Callithrix jacchus]
          Length = 871

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|354500173|ref|XP_003512175.1| PREDICTED: protocadherin-3-like [Cricetulus griseus]
          Length = 508

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E+   YN+++T T++   +  A  ++ V + D NDN P 
Sbjct: 391 LLKPTFKN-YYTLVTEGPLDRESRAEYNITITVTDLGTPRLTAQHTITVQVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 450 FTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 483



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A+H   G +   K LD+E T  YN+ + AT+  G    C+V V +LD NDN P  T    
Sbjct: 292 AIHGVTGEIRLSKELDFEVTNHYNIEIAATDGGGFSGKCNVAVQVLDVNDNAPELTIRKL 351

Query: 74  TGYVSE 79
           T  + E
Sbjct: 352 TSPIPE 357



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +          +V + ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDRALDREEQPELTLTLTAVDGGSPPRSGTTTVRIEVVDINDNAPQFVQSLYEVQ 250

Query: 77  VSEAAPIGALVLTNTSLPL 95
           V E +P+ ALVLT +++ L
Sbjct: 251 VPENSPVDALVLTVSAMDL 269


>gi|297676245|ref|XP_002816053.1| PREDICTED: protocadherin gamma-A1 [Pongo abelii]
          Length = 823

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+T++ LD E    YN++VTAT+           + +L  D NDN+P F Q +Y+ Y
Sbjct: 401 YYRLVTERTLDRELISGYNITVTATDQGTPALSTEAHISLLVTDINDNSPVFHQDSYSAY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + E  P GA + +       +RA D DS  NA
Sbjct: 461 IPENNPRGASIFS-------VRAHDLDSNENA 485



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PL++E  ++Y++ V A + AG  A   V+V +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLNFEEYKMYSMEVQAQDGAGLMAKAKVLVKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 41.6 bits (96), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 13/91 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
           ++ + PLD E   +++L +TA++  G + V S    + + ++D NDN P FTQ  Y   V
Sbjct: 194 MVLQSPLDREEEPVHHLILTASD--GGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINV 251

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E  P+G  +       L++ A D D   N 
Sbjct: 252 PENVPLGTQL-------LMVDATDPDEGANG 275


>gi|133777266|gb|AAI01037.1| PCDHGC4 protein [Homo sapiens]
          Length = 870

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 293 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 351

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 352 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 382



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 193 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 252

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 253 SAPAGMVLIQLNASDP 268



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 406 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 464

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 465 ENNRPGDLLCS-------LAASDPDSGLNALI 489


>gi|397517980|ref|XP_003829180.1| PREDICTED: protocadherin gamma-C4 [Pan paniscus]
          Length = 871

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|395817389|ref|XP_003782154.1| PREDICTED: protocadherin gamma-A5 [Otolemur garnettii]
          Length = 814

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI----LDRNDNTPYFTQLNYT 74
           Y  L+ K+PLD E   ++NL +TA  + G   V S   HI    LD NDN P FTQ  Y 
Sbjct: 191 YPELVLKQPLDREKEAVHNLLITA--LDGGDPVLSGTTHIHVMVLDANDNAPLFTQSEYK 248

Query: 75  GYVSEAAPIGALVLTNTS 92
             V E  PIG  +LT T+
Sbjct: 249 VSVPENIPIGTQLLTLTA 266



 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T + LDYE +R Y + V A +     A   V+V + D NDN P     + T  +SE
Sbjct: 299 GEISTMQSLDYEESRFYLMEVVAQDGGALLASAKVLVSVQDVNDNAPEVILTSLTSSLSE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               G ++        + R  D DS  N 
Sbjct: 359 DCLPGTVI-------ALFRVHDGDSGENG 380



 Score = 37.7 bits (86), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LLT K LD E T  YN+++T  +      +   C + + + D NDN P F+  +Y+  + 
Sbjct: 404 LLTTKTLDREETSDYNITITVIDHGTPPLSTEDC-ISLKVTDVNDNPPAFSHASYSTSLL 462

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P G  + + T       A D DS  NA
Sbjct: 463 ENNPRGISIFSLT-------AHDPDSGENA 485


>gi|395736301|ref|XP_003776733.1| PREDICTED: protocadherin gamma-C4 [Pongo abelii]
          Length = 871

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|114596466|ref|XP_001134749.1| PREDICTED: protocadherin-16 isoform 1 [Pan troglodytes]
          Length = 1382

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
            K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 922  KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 979

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 980  LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 1014



 Score = 44.7 bits (104), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 8   FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDN 64
           FA+L P   P    L  + PLD E+  +Y L + AT+ AG+  + +   +++ + D ND 
Sbjct: 478 FALL-PGGPPGVFFLCVEGPLDRESRDLYELLLVATD-AGSPPLSTEETLLLRVADLNDQ 535

Query: 65  TPYFTQLNYTGYVSEAAPIGALVL 88
            P F+Q +Y   VSEAA  G +V+
Sbjct: 536 PPLFSQQHYKASVSEAAAPGTVVM 559



 Score = 38.9 bits (89), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 9/93 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+    G + T + LD E      L V A ++      A C V + + D NDN P F + 
Sbjct: 607 AIDSESGAISTIRTLDREVQEAVELKVVAQDLGEPPLSATCLVSITVDDVNDNEPIFWRQ 666

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   ++E AP+G   L  T       A D DS
Sbjct: 667 VYNATIAEHAPVGHCFLQVT-------ASDADS 692


>gi|426350313|ref|XP_004042723.1| PREDICTED: protocadherin beta-1 [Gorilla gorilla gorilla]
          Length = 818

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
           P Y  L+  KPLD E     NL++TA +        +  +H+  LD ND  P F++L Y 
Sbjct: 189 PKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDQVPQFSRLVYR 248

Query: 75  GYVSEAAPIGALVLTNTSLPL 95
             VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 9   AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
           AILK   + P  G +  + PLD+EA   Y++ + AT+  G  A   V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSRVLVEVVDVNDNPP 345


>gi|426229752|ref|XP_004023519.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin gamma-C4 [Ovis aries]
          Length = 865

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L  + PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN P+ T 
Sbjct: 294 SLHPTNGKLTLQGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPHITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIGALVLT-NTSLP 94
           +AP G L++  N S P
Sbjct: 254 SAPAGMLLIQLNASDP 269



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG+  +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGSPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|85566754|gb|AAI12085.1| Protocadherin gamma subfamily A, 1 [Homo sapiens]
 gi|85567533|gb|AAI12083.1| Protocadherin gamma subfamily A, 1, isoform 2 precursor [Homo
           sapiens]
 gi|119582330|gb|EAW61926.1| hCG1982215, isoform CRA_e [Homo sapiens]
          Length = 823

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  ++Y++ V A + AG  A   V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E    YN+++TA +  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + +       +RA D DS  NA
Sbjct: 460 YIPENNPRGASIFS-------VRAHDLDSNENA 485



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D   N 
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275


>gi|14196459|ref|NP_114382.1| protocadherin gamma-A1 isoform 2 precursor [Homo sapiens]
 gi|5457063|gb|AAD43768.1|AF152507_1 protocadherin gamma A1 short form protein [Homo sapiens]
          Length = 823

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K+PLD+E  ++Y++ V A + AG  A   V++ +LD NDN P  T  + T  V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             P G ++        +I   D+DS  N 
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T++ LD E    YN+++TA +  G  A+ +   + + + D NDN+P F Q +Y+ 
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA + +       +RA D DS  NA
Sbjct: 460 YIPENNPRGASIFS-------VRAHDLDSNENA 485



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 2   SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
           S+P     + + A  P +  ++ + PLD E   +++L +TA++  G + V S    + + 
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231

Query: 58  ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           ++D NDN P FTQ  Y   V E  P+G  +       L++ A D D   N 
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275


>gi|14277682|ref|NP_115782.1| protocadherin gamma-C4 isoform 2 precursor [Homo sapiens]
 gi|5457098|gb|AAD43785.1|AF152525_1 protocadherin gamma C4 short form protein [Homo sapiens]
 gi|71680343|gb|AAI01036.1| Protocadherin gamma subfamily C, 4 [Homo sapiens]
 gi|72533492|gb|AAI01039.1| Protocadherin gamma subfamily C, 4 [Homo sapiens]
 gi|119582350|gb|EAW61946.1| hCG1982215, isoform CRA_y [Homo sapiens]
          Length = 871

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|354492225|ref|XP_003508250.1| PREDICTED: protocadherin gamma-A6-like [Cricetulus griseus]
          Length = 811

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G + T + LDYE ++ Y L V A +  G +    V++ ILD NDN P     + +  ++E
Sbjct: 299 GEISTSETLDYEDSKFYELDVEARDQPGLQDRAKVLITILDVNDNAPEVVVTSGSRAIAE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            AP G ++        + +  DKDSE N L+
Sbjct: 359 NAPPGTVI-------ALFQVYDKDSEQNGLV 382



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 15/95 (15%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           Y  L+T   LD E    YN++VTAT+     ++ AK +    + + D NDN P F++ +Y
Sbjct: 401 YFRLVTTTELDREQVSSYNITVTATDRGIPPLSTAKFIS---LDVSDINDNPPVFSRSSY 457

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           + YV E  P G  + +       ++A D DSE NA
Sbjct: 458 SVYVPENNPKGISIFS-------LKAVDSDSEENA 485



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 17  PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLN 72
           P Y  L+ +  LD EA  +++L++ A  M G   V      ++V ++D NDN P FTQ  
Sbjct: 189 PKYPELVLEHTLDREAEAVHHLALIA--MDGGDPVRTGMARILVTVVDANDNAPVFTQPI 246

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y   V E  P+G   LT       + A D+D   +A
Sbjct: 247 YRVSVPENLPVGTKKLT-------VNATDQDEGVHA 275


>gi|332234739|ref|XP_003266561.1| PREDICTED: protocadherin beta-12 [Nomascus leucogenys]
          Length = 795

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LK +L+  Y  L T+ PLD E+   YN+S+T T++     K   +V V + D NDN P 
Sbjct: 392 VLKSSLNN-YYTLETESPLDRESRAEYNISITVTDLGTPRLKTEHNVTVLVSDINDNAPI 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           I A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------ISATDRDSGTNA 484



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +H   G +    PLD+EA   Y++ + AT+  G     +V + ++D NDN P  T  + T
Sbjct: 294 IHQKSGDITLTAPLDFEAIESYSIIIQATDGGGLFGKSTVRIQVMDVNDNAPEITVSSIT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E  P         ++ +V R  D+DS  N 
Sbjct: 354 SPIPENTP--------ETVVMVFRIRDRDSGDNG 379



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFHVGATDR-GSPALSSEALVRVRVLDANDNSPF 560


>gi|301753569|ref|XP_002912660.1| PREDICTED: protocadherin alpha-3-like [Ailuropoda melanoleuca]
          Length = 782

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 15/101 (14%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFT 69
           L P  G +  K  +D+E T++Y + V AT+     MAG    C+V+V ILD NDN P   
Sbjct: 296 LDPVSGYISVKGTIDFEETKLYEIQVEATDKGNPPMAGH---CTVLVEILDTNDNVPELV 352

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + +  V E AP+G ++        +I   D+DS  N  L
Sbjct: 353 IKSLSLPVLEDAPLGTVI-------ALISVSDRDSGANGQL 386



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 50  AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
           A  SV V + D NDN P F Q  YT +V E  P G  + T       + A D D++ NAL
Sbjct: 400 ATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFT-------VSARDADAQENAL 452

Query: 110 L 110
           +
Sbjct: 453 V 453



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 13/90 (14%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ KK L+ E T  ++L +TA +  G K        V + ILD NDN P F +  Y   +
Sbjct: 195 LVLKKVLNREDTPEHHLLITAVD--GGKPELTGTIQVKITILDVNDNAPEFERTVYKVSL 252

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E AP       N ++ +++ A D D   N
Sbjct: 253 FENAP-------NGTIAVIVNASDLDEGVN 275


>gi|113206102|ref|NP_001038119.1| protocadherin-15 precursor [Gallus gallus]
 gi|85725331|gb|ABC79283.1| protocadherin-15-CD2/CD3 isoform 1 [Gallus gallus]
          Length = 2192

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
            A++   GV+  KKPLDYE    Y L V A ++   ++            V + + D ND+
Sbjct: 1081 AINNRTGVISVKKPLDYERVTSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVKDENDH 1140

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P FT+  Y G VSE A + + VL        ++A+DKD+
Sbjct: 1141 APVFTKKMYIGGVSEDAKMFSSVLK-------VKADDKDT 1173



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 3   HPVQLFAIL--KPALHPPY-------GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AV 51
            P  L++IL   P  +P Y         L   KP++ +  + ++L + A    G    A 
Sbjct: 319 RPGILYSILVGTPEDYPQYFHMNLTTAELTLLKPINRDLHQKFDLVIKAEQDNGHPLPAF 378

Query: 52  CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
            ++ + +LD N+  PYFT+  Y G++ E++P+G  +  + +L  PL I   D D E
Sbjct: 379 ANLHIEVLDENNQKPYFTKSTYEGFILESSPVGTTISDSRNLTSPLQITVLDNDVE 434



 Score = 37.7 bits (86), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +P+D EA ++Y  S+ A++        +V + ++D NDN+P F+ ++Y
Sbjct: 467 QPVDREAQQLYTFSMIASDGVQESTPVTVNIVVIDANDNSPTFSNISY 514



 Score = 37.7 bits (86), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F Q  Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIINHEVRIVVRDRNDNSPQFQQQRYYVAVNELTPVGTTIFTGFS 171



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A    ++  ++ + +LD +DN+P FT  +Y+  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYSVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G + L        I A+D D  +N
Sbjct: 829 PENLPPGTVFLQ-------IEAKDVDLGSN 851


>gi|62088366|dbj|BAD92630.1| protocadherin beta 5 precursor variant [Homo sapiens]
          Length = 796

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  L+T++ LD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 392 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 450

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 25  KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           K+ LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T    +    E AP  
Sbjct: 304 KRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPET 363

Query: 85  ALVLTNTSLP 94
            + + + S P
Sbjct: 364 VVAVFSVSDP 373



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       ++ + +LD NDN P F Q  Y  
Sbjct: 192 YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSFYEV 250

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E +P+ +LV       +V+ A D D+
Sbjct: 251 QVPENSPLNSLV-------VVVSARDLDA 272



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 569

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 570 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 602


>gi|426350358|ref|XP_004042744.1| PREDICTED: protocadherin gamma-C4 [Gorilla gorilla gorilla]
          Length = 871

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|7661662|ref|NP_056484.1| protocadherin beta-5 precursor [Homo sapiens]
 gi|13431375|sp|Q9Y5E4.1|PCDB5_HUMAN RecName: Full=Protocadherin beta-5; Short=PCDH-beta-5; Flags:
           Precursor
 gi|5457045|gb|AAD43759.1|AF152498_1 protocadherin beta 5 [Homo sapiens]
 gi|14009469|gb|AAK51620.1|AF217753_1 protocadherin-beta5 [Homo sapiens]
 gi|33150746|gb|AAP97251.1|AF134474_1 protocadherin [Homo sapiens]
          Length = 795

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  L+T++ LD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 391 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 450 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 25  KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           K+ LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T    +    E AP  
Sbjct: 303 KRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPET 362

Query: 85  ALVLTNTSLP 94
            + + + S P
Sbjct: 363 VVAVFSVSDP 372



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       ++ + +LD NDN P F Q  Y  
Sbjct: 191 YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSFYEV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E +P+ +LV       +V+ A D D+
Sbjct: 250 QVPENSPLNSLV-------VVVSARDLDA 271



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601


>gi|14196451|ref|NP_114480.1| protocadherin gamma-A11 isoform 2 precursor [Homo sapiens]
 gi|5457059|gb|AAD43766.1|AF152505_1 protocadherin gamma A11 short form protein [Homo sapiens]
 gi|119582341|gb|EAW61937.1| hCG1982215, isoform CRA_p [Homo sapiens]
          Length = 837

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+T + LD E  + YN+++TAT+       A   V +++ D NDN P F   +Y+ Y
Sbjct: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAY 461

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P GA + + T+L       D DS+ NAL+
Sbjct: 462 IPENNPRGASIFSVTAL-------DPDSKQNALV 488



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  +  LD+E  R Y + +   +  G     ++++ ++D NDN P  T  +    + E
Sbjct: 300 GEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILE 359

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +P G ++        ++  +D+DS  N 
Sbjct: 360 NSPPGTVI-------ALLNVQDQDSGENG 381


>gi|395816056|ref|XP_003781529.1| PREDICTED: LOW QUALITY PROTEIN: protocadherin-16 [Otolemur garnettii]
          Length = 3374

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+  +PLD+E+   YNL+V A +       +   V V ILD NDN P FTQ +Y   V
Sbjct: 2628 GCLVLLEPLDFESLTQYNLTVAAADRGQPPRSSAVPVTVTILDVNDNPPVFTQASYRVAV 2687

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E  P+GA +L        + A D D   + L+
Sbjct: 2688 PEDTPVGAELLH-------VEASDADPGPHGLV 2713



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 6/74 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTP----YFTQLNY 73
           G+L  ++PLD+E  R++ L V A +      + S  V VH+ D NDN P     F   + 
Sbjct: 388 GLLRLERPLDFEQRRVHELVVQARDGGAHPELGSAFVTVHVRDANDNQPSMTVIFLSADG 447

Query: 74  TGYVSEAAPIGALV 87
           +  VSEAAP G LV
Sbjct: 448 SPRVSEAAPPGQLV 461



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            L P  G L T   LD E    Y  SV+A + A A  + +   V + + D ND+ P F   
Sbjct: 1980 LEPSSGELRTAIALDREQCPSYTFSVSAVDGAAAGPLSTTVPVTITVRDVNDHAPTFPTS 2039

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLV-IRAEDKDSETNA 108
                 +    PI    L+  +LPL  +RAED+D+  NA
Sbjct: 2040 PLRLRLPRPGPI----LSTPTLPLATLRAEDRDAGANA 2073



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 14/111 (12%)

Query: 7   LFAILKPALHPPY------GVLLTKKPLDY-EATRIYNLSVTATNMAGAKAVCSVIVHIL 59
           L A L  +  PP+      G + T + LD+ +    ++ +VTA +  G K++  V V + 
Sbjct: 693 LGAGLGASGSPPFRIDSHSGDVCTTRTLDHDQGPSSFDFTVTAVDGGGLKSMVYVKVFVS 752

Query: 60  DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           D NDN P F    Y   +S  +  G  VL        +RA D D   +  L
Sbjct: 753 DENDNPPQFYPREYAASLSAQSTPGTAVLR-------VRAHDPDQGPHGRL 796



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYF 68
             L P  G L  +  LD EA  +Y L V A + + A+        +V V IL++ND++P  
Sbjct: 1122 GLEPQSGWLWVRAALDREAQELYTLKVMAVSGSKAEVGQQTGTATVRVSILNQNDHSPRL 1181

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            ++      V+E  P G  V         I A D+DS  N  L
Sbjct: 1182 SEDPTFLAVAENQPPGTSVGR-------IFATDRDSGPNGRL 1216



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G   T +PLD E    + L + A +  G  A+ +   V V +LD ND+ P F    Y+  
Sbjct: 1881 GEFGTMRPLDREVEPAFQLRIEARD-GGQPALSATLLVTVTVLDANDHAPAFPVPTYSVE 1939

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E  P G L+L        ++A D D+  N 
Sbjct: 1940 VPEDVPAGTLLLQ-------LQAHDPDAGANG 1964



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF-TQLNYTG 75
           Y V + ++ LD E    YNL VTAT+      +A  + ++H+ D NDN P F  QL    
Sbjct: 498 YLVCVARR-LDREERDAYNLRVTATDSGSPPLRAEAAFVLHVTDVNDNAPAFDRQLYRPE 556

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E A  G+ V+        + A D D  TN 
Sbjct: 557 PLPEVALPGSFVVR-------VTARDPDQGTNG 582



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
            LH   G L   +PLD E    + L+V A++       A   + + + D ND  P F Q  
Sbjct: 1670 LHSSTGALSVVRPLDREQQAEHILTVVASDHGSPPRSATQVLTISVADVNDEAPAFQQQE 1729

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+  + E +P G  +LT       +RA D D   N 
Sbjct: 1730 YSVLLRENSPPGTSLLT-------LRATDPDLGANG 1758



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 10/99 (10%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQL 71
            +L P  GVL T + LD E     NL+V A +      +  V V +   D ND+TP F   
Sbjct: 1771 SLDPDTGVLTTLRALDREEQEEINLTVYARDRGSPPQLTHVTVRVAVEDENDHTPTFG-- 1828

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + ++S   P G    T T    V+RA D D   N  L
Sbjct: 1829 --SAHLSLEVPEGQDPQTLT----VLRASDPDMGANGQL 1861



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 10/83 (12%)

Query: 27   PLDYEATRIYNLSVTATNMAGAKAVCS-VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            PLD+E    Y+L + A +  G    C+ + V + D NDN P F+Q  Y   + E  P G+
Sbjct: 2412 PLDFEQCSRYHLQLLAHD--GPHEGCANLTVLVEDVNDNAPAFSQSLYQVTLLEHTPPGS 2469

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
             +++       + A D+DS  N 
Sbjct: 2470 AIIS-------VSATDRDSGANG 2485



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD+E   + ++ + A +          +VH+   D+ND+ P FT  +Y   V+E  P G+
Sbjct: 2516 LDHEGPGVVDVVLEARDHGAPGRAAQAMVHVQLQDQNDHAPSFTLPHYRVAVTEDLPPGS 2575

Query: 86   LVLTNTSLPLVIRAEDKD-SETNALLD 111
             +LT       + A D D S T+A +D
Sbjct: 2576 TLLT-------LEATDADGSRTHAAVD 2595



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 19/104 (18%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
            +HP  G + T + LD E    Y L V   +        +  VHI  LD NDN+P F  L 
Sbjct: 1232 IHPQTGEMTTLQILDREQQSSYQLLVQVQDAGNPPRSTTGTVHIAVLDLNDNSPTF--LQ 1289

Query: 73   YTGYVSEAAPI--------GALVLTNTSLPLVIRAEDKDSETNA 108
             +G      PI        G LV T       ++A+D D   N 
Sbjct: 1290 ASGAAGGGLPIQVPDRVSPGTLVTT-------LQAKDPDEGENG 1326


>gi|332234776|ref|XP_003266579.1| PREDICTED: protocadherin gamma-C4 [Nomascus leucogenys]
          Length = 871

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
           +LHP  G L    PLD+E+   Y   V A +  G+ A+   CS+ V +LD NDN PY T 
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  G + E+A  G +V        +I  +D DS +N 
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E    Y L +TA +           + V +LD NDN P F Q +Y   V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253

Query: 80  AAPIG-ALVLTNTSLP 94
           +AP G  L+  N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
           L+T  PLD EA   Y++ VTA++ AG   +    ++ ++I D NDN P F Q ++  +V 
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E    G L+ +       + A D DS  NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490


>gi|326923240|ref|XP_003207847.1| PREDICTED: protocadherin-15-like [Meleagris gallopavo]
          Length = 2258

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 16/100 (16%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDN 64
            A++   GV+  KKPLDYE    Y L V A ++   ++            V + + D ND+
Sbjct: 1147 AINNRTGVISVKKPLDYERVTSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVKDENDH 1206

Query: 65   TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
             P FT+  Y G VSE A + + VL        ++A+DKD+
Sbjct: 1207 APVFTKKMYIGGVSEDAKMFSSVLK-------VKADDKDT 1239



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 13/116 (11%)

Query: 3   HPVQLFAIL--KPALHPPY-------GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AV 51
            P  L++IL   P  +P Y         L   KP++ +  + ++L + A    G    A 
Sbjct: 385 RPGILYSILVGTPEDYPQYFHMNLTTAELTLLKPINRDLHQKFDLVIKAEQDNGHPLPAF 444

Query: 52  CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
            ++ + +LD N+  PYFT+  Y G++ E++P+G  +  + +L  PL I   D D E
Sbjct: 445 ANLHIEVLDENNQKPYFTKSTYEGFILESSPVGTTISDSRNLTSPLQITVLDNDVE 500



 Score = 37.7 bits (86), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +P+D EA ++Y  S+ A++        +V + ++D NDN+P F+ ++Y
Sbjct: 533 QPVDREAQQLYTFSMIASDGVQESTPVTVNIVVIDANDNSPTFSNISY 580



 Score = 37.7 bits (86), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F Q  Y   V+E  P+G  + T  S
Sbjct: 189 KKVGTIINHEVRIVVRDRNDNSPQFQQQRYYVAVNELTPVGTTIFTGFS 237



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A    ++  ++ + +LD +DN+P FT  +Y   V
Sbjct: 835 GSIYTAVKLNREVRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYAVSV 894

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G + L        I A+D D  +N
Sbjct: 895 PENLPPGTVFLQ-------IEAKDVDLGSN 917



 Score = 35.0 bits (79), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 6/66 (9%)

Query: 4   PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRN 62
           P Q+F + + +     G+L  +KPLD E+T  Y L VTA++      +  +V + + D N
Sbjct: 723 PQQVFNLSQSS-----GLLALEKPLDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVN 777

Query: 63  DNTPYF 68
           DN P F
Sbjct: 778 DNGPVF 783


>gi|16716433|ref|NP_444363.1| protocadherin beta 8 precursor [Mus musculus]
 gi|13876318|gb|AAK26079.1| protocadherin beta 8 [Mus musculus]
 gi|117580256|gb|AAI27161.1| Protocadherin beta 8 [Mus musculus]
 gi|148678216|gb|EDL10163.1| mCG141292 [Mus musculus]
          Length = 779

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+EAT  Y + + AT+  G    C+V + +LD NDN P  T  + T  + E
Sbjct: 298 GEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPEAVVAVFSVSDP 372



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L+T++PLD E+   YN+++T +++   +     ++ V + D NDN P 
Sbjct: 391 LLKPTFKNFY-TLVTERPLDRESNAEYNITITVSDLGTPRLTTQHTITVQVSDINDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           FTQ +YT +V E    A  IG            I A D DS +N L+
Sbjct: 450 FTQTSYTLFVHENNSPALHIG-----------TISATDSDSGSNGLI 485



 Score = 35.8 bits (81), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F Q  Y  
Sbjct: 191 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPQFLQSLYAV 249

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 250 EVPENSPLNALVVT 263



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 510 GQLFALRALDYEALQAFEFHVGATDR-GSPALSSEALVRVVVLDDNDNAPFVLYPLQNAS 568

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P  A       L   + A D+DS  NA L
Sbjct: 569 APCTELLPRAA---EPGYLITKVVAVDRDSGQNAWL 601


>gi|355709541|gb|AES03625.1| protocadherin gamma subfamily A, 2 [Mustela putorius furo]
          Length = 321

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
           Y  L+T + LD E    YN++VTA +  G  ++ S   +++ + D NDN P F  ++Y+ 
Sbjct: 65  YHRLVTTRALDREQFSFYNITVTAKD-GGKPSLSSDAYILLQVADINDNPPTFPHVSYSA 123

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           Y+ E  P GA +++       + A D DS+ NA
Sbjct: 124 YIPENNPRGASIIS-------VSAHDPDSDDNA 149


>gi|229442269|gb|AAI72777.1| FAT tumor suppressor 2 precursor [synthetic construct]
          Length = 866

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
           +L P  GV+  +KP+D+E+T++Y + V A  +     V   SV + + D NDN P F   
Sbjct: 512 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 571

Query: 72  NYTGYVSEAAPIGALVLTNTSL 93
            Y   ++E  P+G  V+  T++
Sbjct: 572 PYKAVLTENMPVGTSVIQVTAI 593



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)

Query: 24  TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           ++K LD E T  Y L VTA++    +A  +V + +LD NDN+P  +QL YTG V E    
Sbjct: 739 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 797

Query: 84  GALVLTNTSLPLVIRAEDKDSETNALL 110
           G  +L        + A D D++TNA +
Sbjct: 798 GHFILK-------VSATDLDTDTNAQI 817



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 8/82 (9%)

Query: 27  PLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           PLDYE+   +  +V AT+ A G+ +  +V V + D NDN P F+QL YT  +SE  P   
Sbjct: 1   PLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSISEGLPAQT 60

Query: 86  LVLTNTSLPLVIRAEDKDSETN 107
            V+        + A D+DS  N
Sbjct: 61  PVIQ-------LLASDQDSGRN 75



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
           G + T + LDYEA + +++ V A +           V+V++ D NDN P F Q  Y   V
Sbjct: 100 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 159

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           SE A  G LVL        ++A D DS   + L+
Sbjct: 160 SELATCGHLVLK-------VQAIDPDSRDTSRLE 186



 Score = 41.6 bits (96), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
           +LFAI   +     G + T + LD E  + Y+  V A +      + S   V V I D N
Sbjct: 617 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 671

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
           DN P F    Y G V E +  G LV T  +L   I  +++
Sbjct: 672 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 711



 Score = 38.5 bits (88), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 18  PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
           P G + T + LD E +  R+  + V A +  G  A C+V + + D NDN P F    YT 
Sbjct: 304 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 363

Query: 75  ---GYVSEAAPI 83
                VS+ +P+
Sbjct: 364 SIQSNVSKDSPV 375


>gi|157742892|gb|AAI16270.1| Pcdhb8 protein [Mus musculus]
          Length = 776

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+EAT  Y + + AT+  G    C+V + +LD NDN P  T  + T  + E
Sbjct: 295 GEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISSLTSSIPE 354

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 355 NAPEAVVAVFSVSDP 369



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L+T++PLD E+   YN+++T +++   +     ++ V + D NDN P 
Sbjct: 388 LLKPTFKNFY-TLVTERPLDRESNAEYNITITVSDLGTPRLTTQHTITVQVSDINDNAPA 446

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           FTQ +YT +V E    A  IG            I A D DS +N L+
Sbjct: 447 FTQTSYTLFVHENNSPALHIG-----------TISATDSDSGSNGLI 482



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F Q  Y  
Sbjct: 188 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPQFLQSLYAV 246

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 247 EVPENSPLNALVVT 260



 Score = 35.8 bits (81), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 507 GQLFALRALDYEALQAFEFHVGATDR-GSPALSSEALVRVVVLDDNDNAPFVLYPLQNAS 565

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P  A       L   + A D+DS  NA L
Sbjct: 566 APCTELLPRAA---EPGYLITKVVAVDRDSGQNAWL 598


>gi|26328019|dbj|BAC27750.1| unnamed protein product [Mus musculus]
          Length = 643

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+EAT  Y + + AT+  G    C+V + +LD NDN P  T  + T  + E
Sbjct: 169 GEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISSLTSSIPE 228

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 229 NAPEAVVAVFSVSDP 243



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L  + PLD E    YN+++  +++   +     ++ V ++D NDN P 
Sbjct: 262 LLKPTFEN-YYTLAAEGPLDREIREEYNITIIVSDLGTPRLTTQHTITVQVVDINDNAPA 320

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
           FTQ +YT +V E          N +L +  I A D DS +NA
Sbjct: 321 FTQTSYTMFVHEN--------NNPALHIGTISATDSDSGSNA 354



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F Q  Y+ 
Sbjct: 62  YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPEFVQSLYSV 120

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 121 EVPENSPLDALVVT 134


>gi|432851957|ref|XP_004067126.1| PREDICTED: protocadherin-9-like isoform 2 [Oryzias latipes]
          Length = 1201

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 13/101 (12%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP------Y 67
           AL+   G++  ++PLD E T I+ LSV A++ + + A  +VI+++ D NDN P       
Sbjct: 303 ALNSTSGLITVQRPLDREETAIHKLSVLASDGSSSPARATVIINVTDVNDNPPNIDLRYI 362

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + +N T ++SE  PI      NT + L I   DKD++ N 
Sbjct: 363 ISPINGTVFLSEKDPI------NTKIAL-ITVSDKDTDING 396



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GVL   +  D E    +  +VTA +      +A  +VIV +LD NDN P FT  ++  +V
Sbjct: 521 GVLTASRVFDREDQDRFLFTVTARDNGTPPLQAQAAVIVTVLDENDNNPKFTHNHFQFFV 580

Query: 78  SEAAP----IGALVLTNT 91
           SE  P    +G + +T++
Sbjct: 581 SENLPKYSTVGVITVTDS 598



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
           +L T   LDYE T+ YN  + A++           V V + D NDN P FTQ
Sbjct: 419 LLETSALLDYEGTKEYNFKIVASDSGKPSLNQTALVRVRLEDENDNPPIFTQ 470


>gi|262263244|tpg|DAA06621.1| TPA_inf: protocadherin gamma b19 isoform [Anolis carolinensis]
          Length = 940

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV--HILDRNDNTPYFTQLNYTGY 76
           Y  L+T  PLD EAT  YN+++TAT+          I+   I D NDN+P F + +Y+ Y
Sbjct: 403 YYKLMTDSPLDREATPEYNITITATDKGTPPLSTHKIIPLQISDINDNSPTFGKSSYSIY 462

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G+ + T       ++A D D   NA +
Sbjct: 463 VPENKPAGSSIFT-------VKASDPDMGPNARI 489



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +K LD E  +  +LS+TA +    +      + V+I D NDN P FT+  Y   
Sbjct: 193 YAELVLQKQLDRENEQALHLSLTALDGGEPRKTGTAQIWVNITDANDNPPIFTEEVYKVS 252

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + E  P+G+ VL        + A DKD  TNAL+
Sbjct: 253 LHENTPVGSQVLQ-------VLATDKDEGTNALI 279



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
           K +L   +G+++    +D+E T+ + ++V A +  G  A C++ + ILD NDN P     
Sbjct: 293 KFSLDSVHGIIILIGKVDFEETKEHTMTVEAKDGGGLVAHCNIEISILDENDNAPDVMLA 352

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
           +    VSE +  G L+        +I+  DKD+  +  +D
Sbjct: 353 SVFSPVSENSLPGTLI-------ALIKINDKDTGDHGNVD 385


>gi|262263239|tpg|DAA06616.1| TPA_inf: protocadherin gamma b14 isoform [Anolis carolinensis]
          Length = 939

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 9/91 (9%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT   LD E+T  YN+++TAT+       A  ++ + I D NDN+P F +L+YT YV+E
Sbjct: 405 LLTDGLLDRESTPEYNITITATDKGTPPLSAEKTISLKISDINDNSPVFDKLSYTSYVAE 464

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P+G+ +         ++A D D E N  +
Sbjct: 465 NNPLGSSIFR-------VQAIDPDLEHNGQI 488



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L P  G +  KK LD+E T  Y L+V A +  G     ++ + ILD NDN P F   + +
Sbjct: 295 LDPKDGEITIKKSLDFEETDKYLLTVEARDGGGLVDHSNIEIKILDENDNAPEFILASLS 354

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E + IG LV         +  +DKDS  N 
Sbjct: 355 SPIPEDSAIGTLV-------AFLNIKDKDSGDNG 381



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 13/97 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
           Y  L+ KK LD+E  R ++L++ A  + G K        + + ++D NDN+P F+Q  Y 
Sbjct: 192 YIKLVLKKHLDHETERSFHLTLMA--LDGGKPPKTGTAKIWITVIDVNDNSPVFSQELYI 249

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             + E  P G+LV+        ++A DKD+ +N  ++
Sbjct: 250 VNLKENMPRGSLVVQ-------VKAMDKDAGSNGQIN 279


>gi|119582396|gb|EAW61992.1| hCG1982192, isoform CRA_g [Homo sapiens]
          Length = 950

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+   PLD E+   Y L VTA +       A   V V + D NDN P F+Q  YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATAIVSVEVADVNDNAPAFSQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
           L P  G +  K  +D+E ++ Y + V AT+         C+V++ I+D NDN P     +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQS 354

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +  V E +P+  ++        +I   D+DS  N 
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383



 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ KK L+ E T  + L +TA +  G K        + + +LD NDN P F +  Y   +
Sbjct: 194 LVLKKNLNREDTPKHYLLITAID--GGKPELTGTTQLKITVLDVNDNAPAFERTIYKVRL 251

Query: 78  SEAAPIGALVLT 89
            E AP G LV+T
Sbjct: 252 LENAPNGTLVVT 263



 Score = 34.3 bits (77), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 14/105 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + AG   + S +   V +LD NDN P    
Sbjct: 509 SVHAESGKVYALQPLDHEELELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLM 567

Query: 71  LNYTGY---VSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
               G    VSE  P  +GA  +        +RA D DS  NA L
Sbjct: 568 PRVGGIGGAVSELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607


>gi|148678218|gb|EDL10165.1| mCG141295 [Mus musculus]
          Length = 543

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+EAT  Y + + AT+  G    C+V + +LD NDN P  T  + T  + E
Sbjct: 298 GEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPEAVVAVFSVSDP 372



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L  + PLD E    YN+++  +++   +     ++ V ++D NDN P 
Sbjct: 391 LLKPTFEN-YYTLAAEGPLDREIREEYNITIIVSDLGTPRLTTQHTITVQVVDINDNAPA 449

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
           FTQ +YT +V E          N +L +  I A D DS +NA
Sbjct: 450 FTQTSYTMFVHEN--------NNPALHIGTISATDSDSGSNA 483



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F Q  Y+ 
Sbjct: 191 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPEFVQSLYSV 249

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 250 EVPENSPLDALVVT 263


>gi|449278207|gb|EMC86141.1| Protocadherin Fat 4, partial [Columba livia]
          Length = 4990

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L   KPLD+E  + + L VTAT+         C V V+++D NDN+P F   
Sbjct: 3146 AINTTTGTLTLAKPLDFELCQKHELVVTATDGGWVSRTGYCRVTVNVIDVNDNSPAFNPE 3205

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +Y   V E AP G  V+        + A D DS  NA++
Sbjct: 3206 DYFPNVLENAPSGTTVIR-------LNATDADSGPNAVI 3237



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1370 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPNFPPG 1429

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  P+G+ V++       + A D D++ N  L
Sbjct: 1430 DIFKSIVENVPVGSSVIS-------VTAHDPDADINGQL 1461



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYF 68
           L P+    +  L+++  LD EAT  Y L V   +      +    V V + D NDN P F
Sbjct: 149 LNPSGEGAFLHLVSRGGLDREATPTYQLLVQVEDKGEPRRRGYLQVNVTVQDINDNPPIF 208

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +Q  Y   V E AP+GA VL        + A D D  TNA
Sbjct: 209 SQTLYQARVPEDAPVGASVLQ-------VAAADADEGTNA 241



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LDYEA + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1897 LNPVTGVFNLTRALDYEAQQYYILTVRAEDGGGQFTTIRVYFNILDINDNPPVFSMTSYS 1956

Query: 75   GYVSEAAPIGALVL 88
              + E    G+ +L
Sbjct: 1957 TSLMENLSPGSAIL 1970



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L++ A++           VI++ILD NDN P F+Q+ ++  V
Sbjct: 2731 GEIRSVRPLDREKLSQYTLTIKASDKGTPLQSTTVKVIINILDENDNAPRFSQI-FSASV 2789

Query: 78   SEAAPIGALV 87
             E AP+G  V
Sbjct: 2790 PENAPLGFTV 2799



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    ++L V AT++      ++  V V +LD NDN+P F  + 
Sbjct: 640 LDPVSGKLSTISQLDREEQAHFSLQVLATDLGSPPLFSITRVNVSLLDVNDNSPVFYPVQ 699

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G  V T
Sbjct: 700 YFAHIQENEPAGTYVTT 716



 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
            GVL  ++PLD E+   Y+L V   +MA   A        V + +LD ND+ P F     T
Sbjct: 2004 GVLSIRQPLDRESQSFYSLVVQVHDMAPLPASRFTSTAQVSIILLDVNDSPPSFISPKVT 2063

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             YV E  PI  +V          +A D DS  N+ ++
Sbjct: 2064 -YVPENTPIDTIVFK-------AQATDPDSGPNSYIE 2092



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
           +H   GV+ TK  LD E    Y L + AT+     +    IV I  LD  DN P F+Q  
Sbjct: 744 VHGQTGVITTKIALDREEKTAYQLQIMATDGGHLHSQNQAIVTITVLDTQDNPPVFSQGM 803

Query: 73  YTGYVSEAAPIGALVLT 89
           Y+  V E   +G  V T
Sbjct: 804 YSFVVFENVALGYHVGT 820



 Score = 38.5 bits (88), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 10/99 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            ++P  G ++T   LD E+   Y L V A++    +A+ S   V+V + D NDN P F   
Sbjct: 2418 INPSTGQIITSALLDRESRENYTLVVVASDGGFPRALSSSTSVLVAVADVNDNPPKFQHH 2477

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y  +V      G+ V         +   D D+ +NA L
Sbjct: 2478 PYVTHVPSPTTSGSFV-------FAVTVTDADAGSNAEL 2509



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD EA   Y L+V AT+        S  V+V +LD NDN P F Q  Y         +G 
Sbjct: 2118 LDREAVSNYTLTVVATDKGQPSLSSSTDVVVIVLDINDNNPLFAQKLY------KVEVGE 2171

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
              LT T L + + A D D  TN 
Sbjct: 2172 NTLTGTDL-IQVFATDGDEGTNG 2193



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            ++P  G +   +PL+ E T  Y + V+A + +G      V + ++D NDN P FT+ +Y
Sbjct: 2828 INPSTGDITISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVMDVNDNAPRFTKPSY 2885



 Score = 37.7 bits (86), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD+EAT  Y L + A +       + C + + +LD NDN+P F +      V E   +G 
Sbjct: 1279 LDHEATASYLLVIQAVDSGAVSLSSTCMLSIDVLDENDNSPSFPKTTLLVDVLENMRVGE 1338

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1339 LVSS-------VTATDSDSGDNADL 1356



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
            G L   + LD E    Y L +TA + +G+ A+    ++ V + D NDN P F    Y+  
Sbjct: 2320 GELRLVQSLDREMKEQYILLITAAD-SGSPALTGTGTIAVTVDDVNDNVPTFAFNMYSAT 2378

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E AP G  +       L++ + D D+ TNA++
Sbjct: 2379 VPEDAPTGTDI-------LLVNSSDADASTNAVI 2405



 Score = 37.7 bits (86), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 20/119 (16%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LF+I     +   G +    PLD  A   Y + + A++M   +   + I  V + D
Sbjct: 941  NPKGLFSI-----NEQTGAISLIGPLDINAGS-YQVEILASDMGVPQLSSNFILTVSVHD 994

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGST 114
             NDN P F QL+Y   + E+ P+ +           ++A DKDS  N     ++++G+T
Sbjct: 995  VNDNPPVFDQLSYEITILESEPVNSRFFK-------VQASDKDSGVNGEIAYSIIEGNT 1046



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A++ A     A  +V V + D NDN P F   NY  
Sbjct: 1054 PDGQLYIKSELDRELQERYILLVVASDRAVEPLNATVNVTVILEDVNDNRPLFNSTNYVF 1113

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
            Y  E    G+ V         I A DKD
Sbjct: 1114 YFEEEQRGGSSVGK-------INAVDKD 1134



 Score = 36.2 bits (82), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  G + T+  LDYE  + Y+L V A N+   +  +  SV + +   N+  P F    
Sbjct: 3251 IDPNTGTITTQGFLDYETKQSYHLMVKAFNIPDEERCSFASVNIQLEGTNEYVPRFVSKL 3310

Query: 73   YTGYVSEAAPIGALV 87
            Y   VSEAA  G +V
Sbjct: 3311 YYFEVSEAASKGTVV 3325



 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  GV+  ++ LDYE  + Y+L+V A +            ++ +LD NDN P     Y
Sbjct: 266 VDPESGVIRIRECLDYEMRQQYSLTVQAMDRGVPALSGRAEALIRLLDVNDNEPRVKFRY 325

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A  G +V
Sbjct: 326 FPATSRFASVDENAAPGTVV 345



 Score = 34.7 bits (78), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 35   IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
            IYNL V+AT++   +   +  + I+ +  + P FTQ  Y   + E  PIG  V++
Sbjct: 1602 IYNLIVSATDLGPERRKSTTEMTIILQGGDGPVFTQPKYITILKEGEPIGTNVIS 1656



 Score = 34.7 bits (78), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   +YNLSV A +     A    S++V + D NDN P  +  
Sbjct: 3462 SINPQTGQVTVTAELDRETLPVYNLSVLAIDSGTPSATGSASLLVTLEDINDNGPTLS-- 3519

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3520 TRQGEVMENNRAGTLVMT 3537



 Score = 34.7 bits (78), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 29/105 (27%)

Query: 28  LDYEATRIYNLSVTATNMAGA----------------------KAVCSVIVHILDRNDNT 65
           LD E    YNL+V   +  GA                       +V S+++ + D ND+ 
Sbjct: 394 LDRERIPAYNLTVAVADNYGAPPPGSPTSAFSPDGAVAAPVSRSSVASLVIFVNDINDHP 453

Query: 66  PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           P F Q  Y   +SE  P+G+ V         + A D+DS  NA L
Sbjct: 454 PVFGQSVYRVNISEEVPLGSYVRG-------LSATDRDSGLNANL 491


>gi|410896878|ref|XP_003961926.1| PREDICTED: protocadherin-8-like [Takifugu rubripes]
          Length = 976

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 21/117 (17%)

Query: 1   MSHPV-QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVH 57
           +SH + QLF +   +     G L  + P+D+E    Y L V AT++    + ++C +I+H
Sbjct: 290 VSHEIRQLFQVDHKS-----GRLTLRSPVDFEEKTTYELDVQATDLGANPSPSLCKIIIH 344

Query: 58  ILDRNDN------TPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           I D NDN      TP  +      Y+SEAA   +LV        +I  +D+DS  N+
Sbjct: 345 ITDVNDNAPEISITPMTSMTTGIAYISEAADKDSLV-------ALISTQDRDSGVNS 394



 Score = 38.9 bits (89), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E    Y + + AT+        S  + IL  D NDN+P F Q +++  
Sbjct: 196 YAELVLMKELDRETQSSYTVDLVATDGGHPFRSGSTKITILVTDFNDNSPVFDQNSFSVT 255

Query: 77  VSEAAPIGALVL 88
           + E AP+G ++L
Sbjct: 256 LPEDAPVGTVIL 267



 Score = 35.4 bits (80), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYF 68
           L+ A    Y +++T   LD E    YNL+V A +      + +    + + D NDN P+F
Sbjct: 408 LRQAYEDSY-MIVTAASLDRERISEYNLTVMAEDFGSPPMRKIIQYTIRLSDENDNAPHF 466

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +      V E  P GA + T       + A D D   N  +
Sbjct: 467 ARGVTEVSVVENNPPGAYITT-------VEASDADLANNGKI 501


>gi|403283170|ref|XP_003933000.1| PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1, partial
           [Saimiri boliviensis boliviensis]
          Length = 2759

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/97 (36%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQL 71
           + P  GV+ T++ LD E   +YNL   A +    A   A   V V ILD NDN P F + 
Sbjct: 740 IEPTSGVIRTQRRLDRENVAVYNLWAVAVDRGSPAALSASVEVQVTILDINDNAPMFEKD 799

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               +V E  P+G++V         IRA+D D   NA
Sbjct: 800 ELELFVEENNPVGSVVAK-------IRAQDPDEGPNA 829



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 10/99 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
           LH   G+L    PLD+E  + Y+LS+ A +      + S   V V +LD NDN P F   
Sbjct: 306 LHSLSGILDVINPLDFEDVQRYSLSIKAQDGGRPPLINSSGVVSVQVLDVNDNEPIFVSS 365

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +   V E  P+G  V+        I+A D DS  NA L
Sbjct: 366 PFQATVLENVPLGYSVVH-------IQAVDADSGENARL 397



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 10/90 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-VCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           G++    PLDY+  + Y L+VTA++  G ++    V+++I D N + P F   +YT  VS
Sbjct: 539 GLITLALPLDYKQEQQYVLAVTASD--GTRSHTAHVLINITDANTHRPVFQSSHYTVSVS 596

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           E  P+G  + T       + A D+D+  NA
Sbjct: 597 EDRPVGTSIAT-------LSANDEDTGENA 619



 Score = 44.3 bits (103), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
           + P  G + T   LDYE    Y L++TA +  +       ++ + ILD NDN P F    
Sbjct: 634 IDPDSGTMYTMMELDYEHQVAYTLTITALDNGIPQKSDTTTLEILILDANDNAPQFLWDF 693

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           Y G + E AP       +TS+ L + A D+DS  N  L
Sbjct: 694 YQGSIFEDAP------PSTSI-LQVSATDRDSGPNGRL 724



 Score = 42.4 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 11/100 (11%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTAT----NMAGAKAVCSVIVHILDRNDNTPYFTQ 70
           L+   GV+ T+  LD E    Y L V A+    N     A  +V + + D NDN P F++
Sbjct: 199 LNASSGVVSTRAVLDREEAAEYQLLVEASDQGRNPGPLSATATVYIEVEDENDNYPQFSE 258

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            NY   V E   +   VL        ++A D+D   NA +
Sbjct: 259 QNYVVQVPEDVGLNTAVLR-------VQATDRDQGQNAAI 291



 Score = 42.4 bits (98), Expect = 0.036,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   LD E    + L V A + +     A   + V + D ND++P F Q  Y   V
Sbjct: 100 GAVSTASELDRETKETHVLRVKAVDYSTPPRSATTYITVLVKDTNDHSPVFEQSEYRERV 159

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E   +G  VLT       IRA D+DS  NA
Sbjct: 160 RENLEVGYEVLT-------IRASDRDSPVNA 183



 Score = 35.0 bits (79), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
           +H   G +     LD E    Y+  V A +       +  SV + +LD NDN P FTQ  
Sbjct: 429 IHNSSGWITLCAELDREEVEHYSFGVEAVDHGSPPMSSSTSVSITVLDVNDNDPVFTQPT 488

Query: 73  YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET 106
           Y   ++E A +G+ VLT       ++A D+D+ +
Sbjct: 489 YELRLNEDAAVGSSVLT-------LQARDRDANS 515


>gi|351696445|gb|EHA99363.1| Protocadherin gamma-A2 [Heterocephalus glaber]
          Length = 1532

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  LL  + LD E    YN++VTAT+           + + ++D NDN P FT  +Y+ Y
Sbjct: 964  YHRLLIHRTLDREEVFKYNITVTATDQGTPPLSTETHISLQVVDINDNPPTFTHASYSAY 1023

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            + E  P GA +L+       I A+D DS  NA
Sbjct: 1024 IQENNPRGASILS-------ITAQDPDSGENA 1048



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L  P G ++  K LDYE T+I+ + + A +  G      ++V +LD NDN P F   + T
Sbjct: 294 LQSPSGDIIIIKSLDYEDTKIHEIDIEAQDGPGLLTRTKMVVMVLDVNDNAPEFYMTSAT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             V E +P G ++        +    D+D   NA +
Sbjct: 354 SSVPEDSPPGTVI-------ALFNVHDRDFGKNAFV 382



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +  LD E   +++L + A +         C + V +LD NDN P FTQ  Y   
Sbjct: 191 YSELVLEHALDREEAAVHHLLLVAVDGGDPVRSGTCRIRVKVLDGNDNAPIFTQPEYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E  P+G  +LT       + A D D   NA
Sbjct: 251 VPENMPVGTRILT-------VSATDADEGYNA 275



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  L+T   LD E    YN+++TA +  G     S   H+L    D NDN P F    Y+
Sbjct: 401 YYRLVTTTGLDREQFSFYNITITAED--GGNPSLSTDAHVLLQVADINDNPPAFPHAFYS 458

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            ++ E  P GA + +       + A D DS+ NA
Sbjct: 459 AFIPENNPRGASIFS-------VLAHDPDSDNNA 485



 Score = 41.2 bits (95), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 28  LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
           LDYE +  Y++ V A +  G +A   V+V +LD NDN P  T  +    + E +  G ++
Sbjct: 870 LDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDVNDNAPEVTVTSLISSIQENSSPGTVI 929

Query: 88  LTNTSLPLVIRAEDKDSETNALL 110
                   +    D DS  N L+
Sbjct: 930 -------ALFNVHDSDSGENGLV 945


>gi|157742927|gb|AAI16269.1| Pcdhb8 protein [Mus musculus]
          Length = 779

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+EAT  Y + + AT+  G    C+V + +LD NDN P  T  + T  + E
Sbjct: 298 GEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPEAVVAVFSVSDP 372



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 18/107 (16%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L+T++PLD E+   YN+++T +++   +     ++ V + D NDN P 
Sbjct: 391 LLKPTFKNFY-TLVTERPLDRESNAEYNITITVSDLGTPRLTTQHTITVQVSDINDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           FTQ +YT +V E    A  IG            I A D DS +N L+
Sbjct: 450 FTQTSYTLFVHENNSPALHIG-----------TISATDSDSGSNGLI 485



 Score = 35.8 bits (81), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F Q  Y  
Sbjct: 191 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPQFLQSLYAV 249

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 250 EVPENSPLNALVVT 263



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY--FTQLNYT 74
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN P+  +   N +
Sbjct: 510 GQLFALRALDYEALQAFEFHVGATDR-GSPALSSEALVRVVVLDDNDNAPFVLYPLQNAS 568

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              +E  P  A       L   + A D+DS  NA L
Sbjct: 569 APCTELLPRAA---EPGYLITKVVAVDRDSGQNAWL 601


>gi|395504754|ref|XP_003756712.1| PREDICTED: protocadherin beta-5-like [Sarcophilus harrisii]
          Length = 797

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            + P  G +  KK +D+E+   Y + + AT++      C+V+V ++D NDN P  T L+ 
Sbjct: 293 GVDPSSGEIRLKKQVDFESIEKYEVDIEATDIGALSGKCTVLVQVMDVNDNFPELTMLSL 352

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           T  + E  P         S+  V    D+DS  N  +
Sbjct: 353 TNPIPENIP--------ESVVAVFSIRDRDSGENGRM 381



 Score = 38.1 bits (87), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 18/104 (17%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYF 68
           LK  L   Y ++ T+  LD E+   YN+++T  ++     K   ++ V I D NDN P F
Sbjct: 393 LKSHLENFYSII-TEGALDRESKAEYNITITVIDLGFPRLKTEHNITVLISDINDNPPVF 451

Query: 69  TQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Q  YT Y+ E    A  IG+           I A D DS  NA
Sbjct: 452 IQTMYTLYLPENSSPALHIGS-----------ISARDSDSGINA 484



 Score = 38.1 bits (87), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L +TA +           V + ++D NDN P F Q  Y   + E
Sbjct: 194 LVLDKALDREEQPEFTLILTAMDGGSPPRSGTARVRITVVDVNDNAPVFLQSRYQVQIPE 253

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +PI +LV+T       + A D D+  N 
Sbjct: 254 NSPIDSLVVT-------VSARDLDAGING 275



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP 66
           G L   + LDYEA + +  +VTAT+       ++AV  ++V   D NDN+P
Sbjct: 511 GYLYALRSLDYEAIQTFQFTVTATDGGSPALSSQAVVRIVVQ--DENDNSP 559


>gi|48976105|ref|NP_001001754.1| cHz-cadherin precursor [Gallus gallus]
 gi|34761804|gb|AAQ82055.1| cHz-cadherin [Gallus gallus]
          Length = 2819

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 9/93 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           GV+ T +  D E  + + LSVTAT+ A      +C + V I D NDN P F    Y  ++
Sbjct: 781 GVITTTRSFDREEQKEHTLSVTATDQAPEPLIGICQITVLIADVNDNDPKFENSRYQYFL 840

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           SE  PIG      TS  L + A D D   NA +
Sbjct: 841 SEDTPIG------TSF-LRVTAHDSDQGVNAAI 866



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 4    PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDR 61
            P++ +  L+P        LL  +PLD+E T+ ++L+V A N+A     +   V V++ D 
Sbjct: 979  PIRFY--LRPNRADGSASLLVAEPLDFETTKFFSLTVRAQNVAMIPLASFTIVYVNVTDV 1036

Query: 62   NDNTPYFTQLNYTGYVSEAAPIGALVL 88
            NDN P+F   NY   V E A +G  V+
Sbjct: 1037 NDNVPFFVSSNYEVSVPEGADVGTSVV 1063



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 15/111 (13%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATR-IYNLSVTATNMAGA-KAVCSVIVHI 58
           +++P  LF + + +     G LL   P+DYE    +Y+L + A     A  +V  V+VHI
Sbjct: 449 LTNPSGLFTVRQES-----GELLLTHPVDYEGEHHLYHLLLKAVEAESALSSVAEVMVHI 503

Query: 59  LDRNDNTPYFTQLNYT-GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            D ND +P F    Y+   + E  PIG      TSL L + A D DS +N+
Sbjct: 504 TDENDCSPEFQNSIYSRDNIPETIPIG------TSL-LQVLATDCDSGSNS 547



 Score = 39.7 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G +   + LDYE  + Y L + A++         +I++++++ND  P FTQ  Y 
Sbjct: 1208 VEPEAGTVFIVQSLDYEEEQRYELRLVASDGKWENHTL-IIINVVNKNDEAPVFTQNEYH 1266

Query: 75   GYVSEAAPIGALVLTNTSLP---LVIRAEDKDSETN 107
            G + E           T LP   L + A D D E +
Sbjct: 1267 GSILEEL---------TDLPVFVLKVSATDPDQEAD 1293



 Score = 38.9 bits (89), Expect = 0.41,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)

Query: 14   ALHPPYGVLLTK-KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
            +++P  G + T    LD E    Y L V A +  G     +  + + D ND+ P F Q  
Sbjct: 1426 SINPVSGTICTVLGSLDREKVDKYLLVVEARDGGGLTGTGTATILVTDVNDHAPVFLQRI 1485

Query: 73   YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL-----LDGSTN 115
            YT +VSE A I      NT +  V+ A D+D   NA+     LDG  +
Sbjct: 1486 YTAFVSENASI------NTEVA-VVSAMDRDEGENAMVTFSILDGDND 1526



 Score = 38.5 bits (88), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN---YT 74
            G +   + LD E    +   V AT+ +G        V++ + D NDN P F  ++   + 
Sbjct: 1317 GEISANRRLDREKRSTWRFLVLATDESGEGLTGFADVVIEVRDTNDNAPLFLCVSDDCFM 1376

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            GYV E +P    V+  T++ L    +D  + T+A+L
Sbjct: 1377 GYVPEDSPADTAVMEMTAVDL----DDPKASTHAVL 1408



 Score = 37.4 bits (85), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G ++    LD+E    Y L V AT+M      CS  V+V + D NDN P F + +Y   V
Sbjct: 1645 GWVIVAGVLDHETVTQYQLIVIATDMGQPPLACSATVLVTLQDVNDNGPEF-EAHYNPVV 1703

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E       V  N +  L + A+D+D+  N 
Sbjct: 1704 WENTASPQSVQMNETSTL-LYAKDRDTAANG 1733



 Score = 35.0 bits (79), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 19  YGVLLTKKPLDYE-ATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           +GV+ + + L++E A  +Y   V A +          SV + + + ND  P F+Q  Y  
Sbjct: 563 HGVISSNQRLNFERANHMYEFVVIAVDKGHPPRTGTASVRIQMANVNDEAPVFSQPVYRT 622

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
           ++SE A    LV T       +RA+D D +
Sbjct: 623 FLSEDAGPSTLVAT-------VRAKDPDGD 645


>gi|21707070|gb|AAH33735.1| PCDHA5 protein [Homo sapiens]
          Length = 890

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E+  +Y L VTA +       A  SV V + D NDN P F Q  YT +
Sbjct: 403 YYSLVLDSALDRESVSVYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVF 462

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 463 VKENNPPGCHIFT-------VSARDADAQENALV 489



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +K LD E T+ + L V AT+  G K        +++++LD ND+ P F +  Y   +
Sbjct: 193 LVLRKSLDREETQEHRLLVIATD--GGKPELTGTVQLLINVLDANDSAPEFDKSIYNVRL 250

Query: 78  SEAAPIGALVL 88
            E AP G LV+
Sbjct: 251 LENAPSGTLVI 261



 Score = 35.8 bits (81), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G +     LDYE    Y +++ A + +       C V+V +LD NDNTP          V
Sbjct: 299 GEIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPV 358

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            E AP+  ++        +I   D+DS  N 
Sbjct: 359 KEDAPLSTVI-------ALISVSDRDSGANG 382


>gi|73949395|ref|XP_849314.1| PREDICTED: protocadherin gamma-A2 [Canis lupus familiaris]
          Length = 823

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
           Y  L+T + LD E    YN++VTA +  G K   S   HIL    D NDN P F  ++Y+
Sbjct: 401 YHRLVTTRTLDREQFSSYNITVTAKD--GGKPSLSTDAHILLQVADINDNPPTFPHMSYS 458

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+ E  P GA +++       + A D DSE N 
Sbjct: 459 AYIPENNPRGASIIS-------VVAHDPDSEDNG 485



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G ++  K LDYE  +++ + + A +  G      VIV +LD NDN P F   + T  + E
Sbjct: 299 GDIIITKSLDYEDAKVHEIDIEAQDGPGLLTRTKVIVTVLDVNDNAPEFYVTSATSSIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +P G ++        +    D+DS  NA +
Sbjct: 359 DSPPGTII-------ALFNVHDRDSGQNAFI 382



 Score = 41.2 bits (95), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+ +  LD E    ++L + A +           + V +LD NDN P FTQ  Y   
Sbjct: 191 YPELVLEHSLDREEKAFHHLILVALDGGSPIRSGTSRIRVTVLDANDNAPVFTQPEYRVS 250

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E+ PIG  +LT       + A D D   NA
Sbjct: 251 VPESMPIGTRILT-------VTATDADEGYNA 275


>gi|18087781|ref|NP_444361.1| protocadherin beta 6 precursor [Mus musculus]
 gi|13876314|gb|AAK26077.1| protocadherin beta 6 [Mus musculus]
          Length = 772

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+EAT  Y + + AT+  G    C+V + +LD NDN P  T  + T  + E
Sbjct: 298 GEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPEAVVAVFSVSDP 372



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L  + PLD E    YN+++  +++   +     ++ V ++D NDN P 
Sbjct: 391 LLKPTFEN-YYTLAAEGPLDREIREEYNITIIVSDLGTPRLTTQHTITVQVVDINDNAPA 449

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
           FTQ +YT +V E          N +L +  I A D DS +NA
Sbjct: 450 FTQTSYTMFVHEN--------NNPALHIGTISATDSDSGSNA 483



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F Q  Y+ 
Sbjct: 191 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPEFVQSLYSV 249

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 250 EVPENSPLDALVVT 263


>gi|74149738|dbj|BAE43862.1| Protocadherin alpha [Macaca fuscata]
          Length = 937

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+    LD E+   Y L VTA +       A  SV V + D NDN P FTQ  YT +
Sbjct: 404 YYSLVLDSVLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFTQSEYTVF 463

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           V E  P G  + T       + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 18  PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTG 75
           P G++L +KPLD E T   +L +TAT+    +   +V  ++ +LD NDN P F +  YT 
Sbjct: 191 PLGLVL-RKPLDREETPELHLLLTATDGGKPELTGTVQLLITVLDVNDNAPVFDRTLYTV 249

Query: 76  YVSEAAPIGALVL 88
            + E   IG LV+
Sbjct: 250 KLPENVSIGTLVI 262



 Score = 35.4 bits (80), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 14/105 (13%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
           ++H   G +   +PLD+E   +    V+A + AG  ++ S   + V +LD NDN P    
Sbjct: 509 SVHAESGKVYALQPLDHEELELLQFQVSARD-AGVPSLSSNATLQVFVLDENDNAPVLLA 567

Query: 71  LNYTGY---VSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
               G    VSE  P  +GA  +        +RA D DS  NA L
Sbjct: 568 PRVGGIGGAVSELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607



 Score = 35.0 bits (79), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFT 69
           + P  G +     +D+E +R + + V A +     +AG    C+V+V ++D NDN P  T
Sbjct: 295 MDPVSGAITVIGHMDFEESRAHKIPVEAVDKGFLPLAGH---CTVLVEVVDVNDNAPQLT 351

Query: 70  QLNYTGYVSEAAPIGALV 87
             +    +SE A  G ++
Sbjct: 352 LTSLFLPISEDAQPGTVI 369


>gi|390459327|ref|XP_003732276.1| PREDICTED: protocadherin beta-8-like [Callithrix jacchus]
          Length = 801

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPY 67
           +LK ++   Y  LLT++PLD E+   YN+++T +++   K    + + +L  D NDN P 
Sbjct: 393 LLKSSVENFY-TLLTERPLDRESRAEYNITITVSDLGTPKRTTQLKMTVLVSDVNDNAPT 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 452 FTQSSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 485



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E    Y +++ A +  G    C+V++ ++D ND+ P  T   +T  + E
Sbjct: 300 GEIRLKKQLDFEKLHSYEINIEARDAGGFSGKCTVLIQVMDVNDHAPEVTMSAFTSPIPE 359

Query: 80  AAP 82
            AP
Sbjct: 360 NAP 362



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V V ++D NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEPELRLTLTALDGGSPSKSGTALVYVEVVDFNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVL 88
           +SE +PIG LV+
Sbjct: 252 ISEDSPIGFLVV 263



 Score = 35.4 bits (80), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+
Sbjct: 512 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 561


>gi|344275015|ref|XP_003409309.1| PREDICTED: protocadherin-15 isoform 3 [Loxodonta africana]
          Length = 1940

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT   
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPA 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +    N + PL I   DKD E
Sbjct: 400 YQGYILESAPVGSTISDSLNLTTPLRIIVLDKDVE 434



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F++
Sbjct: 1087 GVIYVNAPLDYETKTSYMLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFSK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDTDT 1173



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYEVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLK-------IEAKDVD 847


>gi|449267275|gb|EMC78241.1| Protocadherin Fat 4, partial [Columba livia]
          Length = 3610

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G++  ++ LD+E  R ++L+V A +  G  A C V V +LD NDN P  T L+ +  V E
Sbjct: 2595 GLITLQEALDFEDMRSFSLTVEARDRGGLLAHCKVEVEVLDVNDNAPEITMLSVSSPVPE 2654

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              P G +V        ++   D+DS  N 
Sbjct: 2655 DVPAGTVV-------ALLNVNDRDSGVNG 2676



 Score = 51.2 bits (121), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 11/93 (11%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTG 75
           Y  ++T + LD E    YN++V A +  G+ A+CS  V    +LD NDN P F +  Y+ 
Sbjct: 655 YYSVVTARELDREQVSEYNVTVRAAD-GGSPALCSSAVLWLRVLDVNDNAPVFAEARYSA 713

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    GALVL        +RA D D   NA
Sbjct: 714 RVPENNAEGALVLR-------VRAWDADWGQNA 739



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 38/68 (55%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G+++ K+ LD+E T  Y L V A +  G  A C V V +LD NDN P  T  + +  V  
Sbjct: 1190 GMIILKETLDFEDTSGYTLLVEARDGGGLLAHCEVDVEVLDVNDNEPEMTLTSVSSPVPA 1249

Query: 80   AAPIGALV 87
             AP+G +V
Sbjct: 1250 DAPVGTVV 1257



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            Y  ++T + LD E    YN++V A +    A     + +++ D NDNTP F Q  Y   +
Sbjct: 1833 YYSVVTARELDREQVSEYNVTVRAVDGGSPALGTAQLCINVTDANDNTPVFAQDRYRASL 1892

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             E AP G+ VL        + A D D+ TNA +
Sbjct: 1893 REDAPPGSTVLN-------VSASDADAGTNARI 1918



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G+++ ++ LD+E TR ++L+V A +  G  A   V + +LD NDN P  T    +  V E
Sbjct: 1940 GMIMLQEALDFEDTRSFSLAVEAKDGGGLVAHSKVEIEVLDVNDNEPEITLTLVSSPVPE 1999

Query: 80   AAPIGALV 87
             AP+G +V
Sbjct: 2000 NAPVGTVV 2007



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 12/93 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTG 75
           Y V++ ++ LD E    YNL+V A +  G+ A+ S  V    +LD NDN P F +  Y+ 
Sbjct: 328 YSVVIARE-LDREQVSEYNLTVQAAD-GGSPALWSSAVLRLRVLDVNDNAPVFAEARYSA 385

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            V E    GALVL        +RA D D   NA
Sbjct: 386 RVPENNAAGALVLR-------VRAWDADWGQNA 411



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTG 75
            Y  ++T + LD E    YN++V A +  G+ A+ S  V    +LD NDN P F +  Y+ 
Sbjct: 974  YYSVVTARELDREQVSEYNVTVRAVD-GGSPALWSSAVLWLRVLDVNDNAPVFAEARYSA 1032

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
             + E    GALVL        +RA D D   NA +  S
Sbjct: 1033 RLPENNAAGALVLR-------VRAWDADWGQNARVRNS 1063



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 9    AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP 66
            A+ +  LH   G L+  K LD E    + L + A++           + V +LD NDN P
Sbjct: 2261 ALFRVGLHS--GELVLAKALDREEAAFHELVLRASDGGEPARTGTARIRVAVLDANDNAP 2318

Query: 67   YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             F+Q  YT  V E  P+G+ +       +++ A D D   N  +
Sbjct: 2319 VFSQAEYTVRVPEDVPVGSTI-------VIVTATDADEGLNGCI 2355



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 11/88 (12%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTG 75
            Y  ++T + LD E    YN++V AT+  G+ A+ S  V    +LD NDN P F +  Y+ 
Sbjct: 2909 YYRVVTSRELDREQVSEYNVTVRATD-GGSPALWSSAVLWLRVLDVNDNAPVFAEARYSA 2967

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKD 103
             + E   +GA VL        +RA D D
Sbjct: 2968 RLPENNAVGAPVLR-------VRAWDTD 2988



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L + AT+           + V +LD NDNTP F+Q  YT  V E
Sbjct: 448 LVLAKALDREEAAFHELMLRATDGGEPARTGTARIRVEVLDANDNTPVFSQAEYTVRVPE 507

Query: 80  AAPIGA-LVLTNTSLP 94
             P+G+ LV+   + P
Sbjct: 508 DVPVGSTLVIVTATDP 523



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQL 71
            AL    G L  K  LDYE T++Y + + A +      V  C V+V ++D NDN+P  T  
Sbjct: 3350 ALDSATGELRVKGQLDYEETKLYEIYLQAKDKGAVPGVAHCKVLVEVVDVNDNSPEVTVT 3409

Query: 72   NYTGYVSEAAPIGALV 87
            +    V E A  G +V
Sbjct: 3410 SVYSPVPEDAAPGTVV 3425



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIV---HILDRNDNTPYFTQLNYTG 75
            Y  ++T + LD E    YN++V A +  G+ A+ S  V    +LD NDN P F +  Y+ 
Sbjct: 2479 YYSVVTARELDREQVSEYNVTVRAAD-GGSPALWSSAVLWLRVLDVNDNAPVFAEARYSA 2537

Query: 76   YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             + E    G LVL        +RA D D   NA
Sbjct: 2538 RLPENNAAGVLVLR-------VRAWDADWGQNA 2563



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 10   ILKPALHPPYGVLLTKKPLDYEATRIYN----LSVTATNMAGAKAVCSVIVHI--LDRND 63
            + K A+ P  G++  ++ LD+E TR       L +TA +         V +HI  +D ND
Sbjct: 3234 LQKFAVDPEGGMITLQEALDFEDTREEQRELHLVLTALDGGSPPRSAHVQIHIEVVDAND 3293

Query: 64   NTPYFTQLNYTGYVSEAAPIGALV 87
            N P F Q  Y   V E  P G LV
Sbjct: 3294 NAPVFNQSTYKASVRENTPSGTLV 3317



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 15/97 (15%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
            +  L+ ++ LD E      L +TA +      +G   +C   +++ D NDNTP F Q  Y
Sbjct: 3136 FAELVLRRALDREREASLRLVLTALDGGDPPRSGTAQLC---INVTDANDNTPVFAQDRY 3192

Query: 74   TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
               + E AP G+ VL        + A D D+ TNA +
Sbjct: 3193 RASLREDAPPGSTVLN-------VSASDADAGTNARI 3222



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+  K LD E    + L + A++           + V +LD NDN P F+Q  YT  V E
Sbjct: 2704 LVLAKALDREEAAFHELVLRASDGGEPAQTGTARIRVAVLDANDNAPVFSQAEYTVRVPE 2763

Query: 80   AAPIGALVLTNTS 92
              P+G+ ++T T+
Sbjct: 2764 DVPVGSTLVTVTA 2776



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L + A++           + V +LD NDN P F+Q  YT  V E
Sbjct: 120 LVLAKALDREEAAFHELVLRASDGGEPARTGTARIRVAVLDANDNAPVFSQAEYTVRVPE 179

Query: 80  AAPIGALVLTNTS 92
             P+G+ ++T T+
Sbjct: 180 DVPVGSTLVTVTA 192



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           L+  K LD E    + L + A++           + V +LD NDN P F+Q  YT  V E
Sbjct: 767 LVLAKALDREEAAFHELVLRASDGGEPARTGTARIRVAVLDANDNAPVFSQAEYTVRVPE 826

Query: 80  AAPIGALVLT 89
             P+G+ ++T
Sbjct: 827 DVPVGSTLVT 836



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 22   LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            L+  K LD E    + L + A   AG +        + V +LD NDN P F+Q  YT  V
Sbjct: 1626 LVLAKALDREEAAFHELVLRA--RAGGEPARTGTARIRVAVLDANDNAPVFSQAEYTVRV 1683

Query: 78   SEAAPIGALVLTNTS 92
             E  P+G+ ++T T+
Sbjct: 1684 PEDVPVGSTLVTVTA 1698



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 19   YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            Y  L TK  LD E    YN+++TA +       AV  ++V + D NDN P  +Q +Y  Y
Sbjct: 3460 YYTLKTKAALDREKASEYNITITARDSGSPPLSAVKQILVQVSDVNDNAPKTSQDSYDVY 3519

Query: 77   VSE 79
            V E
Sbjct: 3520 VLE 3522



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 11/97 (11%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +   + LD+E    Y + V A +  G      V + + D NDN P  +  +    +SE
Sbjct: 553 GAITLVRSLDFEEGDSYEMDVQARDGGGLSDTARVAITVTDINDNAPEVSVRSALREISE 612

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDS----ETNALLDG 112
            AP G +V        ++  +D+DS    E    LDG
Sbjct: 613 DAPSGTVV-------ALLHVQDRDSGANGEVRCSLDG 642



 Score = 38.5 bits (88), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 46   AGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
            +G   +C   +++ D NDN P F Q  Y   + E AP G+ VL        + A D DS 
Sbjct: 1114 SGTAQLC---INVTDANDNAPVFAQDRYRASLREDAPPGSTVLN-------VSASDADSG 1163

Query: 106  TNALL 110
            TNA +
Sbjct: 1164 TNARI 1168



 Score = 37.7 bits (86), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L    G +   + LDYE    Y + V   +  G      V + + D NDN P  T  +  
Sbjct: 220 LDAETGAITLVRSLDYEKDDSYEMEVQTHDGGGLFDKTKVTITVTDVNDNPPEITVSSAV 279

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             +SE AP G +V        ++  +D+DS  N 
Sbjct: 280 SEISEDAPPGTMV-------ALLYVQDRDSGANG 306



 Score = 37.4 bits (85), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            G +   + LD+E    Y + V A +  G      V + + D NDN P  +  +    +SE
Sbjct: 2377 GAIALVRSLDFEEGDTYEMDVQARDSGGLFDTAKVTITVTDVNDNAPKISVRSSLSEISE 2436

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDS----ETNALLDG 112
             A  G +V        ++  +D+DS    E    LDG
Sbjct: 2437 DAQSGTVV-------ALLHVQDRDSGANGEVRCSLDG 2466



 Score = 36.2 bits (82), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           L    G +   + LD+E    Y + V A +          ++ + D NDN P  T ++  
Sbjct: 867 LDSETGAITLVRSLDFEEGDTYEVEVQARDGGELFDTAKFVITVTDVNDNPPELTVMSQL 926

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDS----ETNALLDG 112
             VSE +P G +V        ++  +D DS    E    LDG
Sbjct: 927 SEVSEDSPSGTVV-------ALLHVQDWDSGPNGEVRCSLDG 961



 Score = 35.8 bits (81), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L    G +  K+ LD+E     +L V A +      +  V + + D NDN P  +  +  
Sbjct: 2802 LDSETGEIFLKECLDFEEFSSLDLEVQARDGGDLSNMAKVTITVSDVNDNAPEISVRSSL 2861

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +SE +P G +V        ++  +D+DS  N 
Sbjct: 2862 SEISEDSPAGIVV-------ALLHVQDRDSGPNG 2888



 Score = 34.3 bits (77), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L    G +   + LD+E    Y L V A +         V + + D NDN P  +  +  
Sbjct: 1726 LDAEKGAITLVRSLDFEEGDSYELEVQARDGGVLFDTARVAIVVTDVNDNMPEISVRSAR 1785

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +SE +P G +V        ++  +D+DS  N 
Sbjct: 1786 SKISEDSPPGTVV-------ALLHVQDRDSGANG 1812


>gi|441619416|ref|XP_003257906.2| PREDICTED: LOW QUALITY PROTEIN: protocadherin-23-like [Nomascus
           leucogenys]
          Length = 2917

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)

Query: 12  KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
           K ++HP  G + T+KPLD+E   +  L+V A    G+   CS   V + ++D NDN P F
Sbjct: 424 KFSIHPWLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVVDVNDNHPAF 481

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            + +    +S+  P G      T+L L  RAED+DS  N L+
Sbjct: 482 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 516



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L  K+P  LD+E      L V A + +G +A C V V I D NDN+P F Q  Y   V
Sbjct: 1739 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSVYQAAV 1797

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
            SE     A V+        + A D DS  N L++ S
Sbjct: 1798 SEGQLYNAHVIQ-------VFATDLDSGLNGLIEYS 1826



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE    + L++ A++      +   V V++LD ND+ P F   +Y+  V 
Sbjct: 2266 GVLYLIKPLDYEEMTKFTLTIQASDAEKKHISFAVVFVNVLDDNDHAPQFMFSSYSCIVP 2325

Query: 79   EAAPIGALVLTNTSL 93
            E  PI + + +  +L
Sbjct: 2326 ENLPISSTICSINAL 2340



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 18   PY---GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQL 71
            PY   G L+    +D EA+  + L + A++ +G   + S   + + +LD NDN P F+ L
Sbjct: 2156 PYKQVGYLVLLHSMDREASASHELVILASD-SGCPPLSSTAVISIQVLDVNDNPPNFSSL 2214

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            +Y  +V E+ P+G+ +        V+ A D+D+ ++A
Sbjct: 2215 SYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 2244



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            A++   G L T + LD E    + L++  +++      +V  + V +LD ND++P F  L
Sbjct: 1423 AINEMSGELSTTRALDREQVSNFTLAILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTL 1482

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             Y   + E A +G +V       LV+ A DKD   N 
Sbjct: 1483 YYQSSMREDAEVGTVV-------LVLSAVDKDEGLNG 1512



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 12   KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
            K A+    GV++  K LD+E    Y L +  ++        +++V +LD NDN P F+Q 
Sbjct: 1938 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSV-HHTEGALVVRVLDVNDNPPVFSQD 1996

Query: 72   NYTGYVSEAAPIGALVLT 89
             Y   V E+ P+G  VLT
Sbjct: 1997 FYQVTVPESIPVGYSVLT 2014



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP +G L+T  PLD E+     L+VTA++ A        +++ + IV ILD ND+ P F
Sbjct: 1108 IHPSFGTLVTVSPLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 1166

Query: 69   TQLNYTGYVSEAAPIGALV 87
                   +V E   +G+LV
Sbjct: 1167 MSFP-IAHVKEDVTVGSLV 1184



 Score = 38.5 bits (88), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
            + P  G +  ++  DYE+T+ YN  V A    +        +VIV + D NDN+P F  
Sbjct: 636 GIRPYTGWIYLRRQFDYESTQTYNFRVFAWIPEDGLLQNVSTTVIVRVRDENDNSPTF-- 693

Query: 71  LNYTGYVS-EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           LN   ++  E +P+   V++       I A D DS  N  L
Sbjct: 694 LNDVLFLKVEESPVPQGVISK------ITAIDIDSGKNGQL 728



 Score = 37.7 bits (86), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
            G L   K LDYE T  Y   V  T+ +   ++ S +   + + D+ND++P F        
Sbjct: 1005 GDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLNIDVEDQNDHSPSFQDELIVIS 1064

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKD 103
            V E  P+G LV        V  A+D D
Sbjct: 1065 VEENVPVGTLV-------YVFNAKDGD 1084



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G+L T  PLDYE    + L+V A +  G  A+ S   + + +LD ND  P F Q  Y   
Sbjct: 1220 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTITVLDVNDEAPVFKQHLYEAS 1278

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1279 VKENRNPGEFVTR-------VEALDRDSGVNSKL 1305



 Score = 36.6 bits (83), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 14/80 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLNYTGYV 77
            GV+ TK  LDYE T  Y+L V AT+    +   + I  V + D NDN P F         
Sbjct: 1843 GVITTKAMLDYELTSTYSLIVQATDKGIPRLSNTTIIKVQVTDINDNAPAF-------LT 1895

Query: 78   SEAAPIGALVLTNTSLPLVI 97
            SEA  I        SLP VI
Sbjct: 1896 SEAVEIA-----EDSLPGVI 1910


>gi|344275011|ref|XP_003409307.1| PREDICTED: protocadherin-15 isoform 1 [Loxodonta africana]
          Length = 1938

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT   
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPA 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +    N + PL I   DKD E
Sbjct: 400 YQGYILESAPVGSTISDSLNLTTPLRIIVLDKDVE 434



 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F++
Sbjct: 1087 GVIYVNAPLDYETKTSYMLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFSK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDTDT 1173



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYEVYV 518



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLK-------IEAKDVD 847


>gi|194219822|ref|XP_001918068.1| PREDICTED: protocadherin beta-18-like [Equus caballus]
          Length = 795

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 7/88 (7%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T++PLD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 393 VLKPTFKNFY-TLVTERPLDRESRAEYNITITITDMGTPRLKTEHNITVLVSDVNDNAPA 451

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNT 91
           FTQ +YT +V E    A  IG++  T+T
Sbjct: 452 FTQTSYTLWVRENNSPALHIGSVSATDT 479



 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +HP  G +  K  LD+E T+ Y +++ A +        +++V ++D NDN P     + T
Sbjct: 294 IHPISGEVHLKALLDFELTQSYTINIQAIDGGSLLGKSTILVRVVDVNDNPPEIVMTSLT 353

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             + E +    +V        V    D+DS  N  +
Sbjct: 354 SPIPENSSPEMVV-------AVFSVRDQDSGDNGRM 382



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 512 GHLFALRSLDYEALQAFEFGVGATDR-GSPALSSQARVRVLVLDANDNSPFVLYPLQNGS 570

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 571 APCTELVPRAAEAGYLVTK-------VVAVDGDSGQNAWL 603



 Score = 35.0 bits (79), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
           Y  LL  + LD E    + L++TA +        + +V +L  D NDN P F +  Y   
Sbjct: 191 YPELLLDQSLDREKESEFRLTLTALDGGSPPRSGTALVRVLVLDINDNAPEFERPIYEVQ 250

Query: 77  VSEAAPIGALVL 88
           V E +P+ +LV+
Sbjct: 251 VPENSPLDSLVV 262


>gi|85725329|gb|ABC79282.1| protocadherin-15-CD1 isoform 1 [Gallus gallus]
          Length = 1899

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+  KKPLDYE    Y L V A ++   ++            V + + D ND+ P FT+
Sbjct: 1087 GVISVKKPLDYERVTSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVKDENDHAPVFTK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + + VL        ++A+DKD+
Sbjct: 1147 KMYIGGVSEDAKMFSSVLK-------VKADDKDT 1173



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
           KP++ +  + ++L + A    G    A  ++ + +LD N+  PYFT+  Y G++ E++P+
Sbjct: 351 KPINRDLHQKFDLVIKAEQDNGHPLPAFANLHIEVLDENNQKPYFTKSTYEGFILESSPV 410

Query: 84  GALVLTNTSL--PLVIRAEDKDSE 105
           G  +  + +L  PL I   D D E
Sbjct: 411 GTTISDSRNLTSPLQITVLDNDVE 434



 Score = 37.7 bits (86), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 30/48 (62%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           +P+D EA ++Y  S+ A++        +V + ++D NDN+P F+ ++Y
Sbjct: 467 QPVDREAQQLYTFSMIASDGVQESTPVTVNIVVIDANDNSPTFSNISY 514



 Score = 37.4 bits (85), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V ++I H     + DRNDN+P F Q  Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTIINHEVRIVVRDRNDNSPQFQQQRYYVAVNELTPVGTTIFTGFS 171



 Score = 37.0 bits (84), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A    ++  ++ + +LD +DN+P FT  +Y+  V
Sbjct: 769 GSIYTAVKLNREVRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYSVLV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
            E  P G + L        I A+D D  +N
Sbjct: 829 PENLPPGTVFLQ-------IEAKDVDLGSN 851


>gi|12654693|gb|AAH01186.1| Protocadherin beta 5 [Homo sapiens]
 gi|119582383|gb|EAW61979.1| protocadherin beta 5 [Homo sapiens]
 gi|123981940|gb|ABM82799.1| protocadherin beta 5 [synthetic construct]
 gi|123996771|gb|ABM85987.1| protocadherin beta 5 [synthetic construct]
 gi|168277620|dbj|BAG10788.1| protocadherin beta 5 precursor [synthetic construct]
          Length = 795

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  L+T++ LD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 391 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 450 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 25  KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           K+ LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T    +    E AP  
Sbjct: 303 KRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPET 362

Query: 85  ALVLTNTSLP 94
            + + + S P
Sbjct: 363 VVAVFSVSDP 372



 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       ++ + +LD NDN P F Q  Y  
Sbjct: 191 YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSFYEV 249

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E +P+ +LV       +V+ A D D+
Sbjct: 250 QVPENSPLNSLV-------VVVSARDLDA 271



 Score = 35.4 bits (80), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601


>gi|363747648|ref|XP_003644076.1| PREDICTED: protocadherin beta-14-like, partial [Gallus gallus]
          Length = 372

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYVSE 79
          L+ +KPLD E     + ++ AT+        S  +HI  LD NDN P FTQ  Y G +SE
Sbjct: 5  LILEKPLDREEQPELDFTLIATDGGSPPRSGSTQIHIVVLDVNDNVPVFTQKVYVGQISE 64

Query: 80 AAPIGALVL 88
          +AP G++VL
Sbjct: 65 SAPEGSVVL 73



 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +   KPLDYE T  Y  SV A +  G  A+C V+V +LD NDN P     +++  + E
Sbjct: 110 GEIRVMKPLDYEQTLKYEFSVRAMDGGGLSAMCKVVVEVLDVNDNAPEIVVSSFSSPIPE 169

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               G ++        +    D+DS  N 
Sbjct: 170 NVEPGTVI-------ALFAVRDQDSGANG 191



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV---IVHILDRN 62
           +L+  L+PA    Y  L+T + LD E    + + VTA + AG+  + S     V I D N
Sbjct: 200 RLYFALRPAFKNYYE-LVTVRTLDREERAQHMVVVTAAD-AGSPPLTSTHTFSVDISDVN 257

Query: 63  DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           DN P F Q +YT YV E      LV         ++A D D+  NA
Sbjct: 258 DNAPVFNQTSYTMYVHENNAPALLVGA-------VKATDADAGPNA 296


>gi|187956461|gb|AAI50717.1| Protocadherin beta 6 [Mus musculus]
          Length = 772

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  K  LD+EAT  Y + + AT+  G    C+V + +LD NDN P  T  + T  + E
Sbjct: 298 GEIRLKGALDFEATSYYTMEIVATDSGGLSGKCTVAIQVLDVNDNAPKLTISSLTSSIPE 357

Query: 80  AAPIGALVLTNTSLP 94
            AP   + + + S P
Sbjct: 358 NAPEAVVAVFSVSDP 372



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           +LKP     Y  L  + PLD E    YN+++  +++   +     ++ V ++D NDN P 
Sbjct: 391 LLKPTFEN-YYTLAAEGPLDREIREEYNITIIVSDLGTPRLTTQHTITVQVVDINDNAPA 449

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
           FTQ +YT +V E          N +L +  I A D DS +NA
Sbjct: 450 FTQTSYTMFVHEN--------NNPALHIGTISATDSDSGSNA 483



 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  + LD E      L +TA +  GA       +V + ++D NDN P F Q  Y+ 
Sbjct: 191 YPELVLDRALDREEQPELTLILTALD-GGAPPKSGTTTVRIEVVDINDNAPEFVQSLYSV 249

Query: 76  YVSEAAPIGALVLT 89
            V E +P+ ALV+T
Sbjct: 250 EVPENSPLDALVVT 263


>gi|119514207|gb|ABL75870.1| protocadherin 2A30 [Takifugu rubripes]
          Length = 945

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGY 76
           Y  L    PLD E++  Y++S+ AT+    A +  SVI VH+ D NDN P F +  +  Y
Sbjct: 401 YYSLAVAGPLDRESSSQYSISIVATDEGSPALSSTSVINVHVSDVNDNRPLFIENVFNIY 460

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           V E +P+GA++ T       + A D D++ N 
Sbjct: 461 VKENSPVGAIIKT-------VSASDSDTDQNG 485



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LL +KPLD E   + +L +TA +          +++V++LD NDN P F+Q  Y   + E
Sbjct: 191 LLLQKPLDREKQSVIHLILTAVDGGTPAKSGSMTIVVNVLDTNDNPPVFSQTLYKASIHE 250

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            A IG  V+T       + A D+D+  N 
Sbjct: 251 NAKIGTSVIT-------LNATDRDAGQNG 272



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           A+ P  G ++ KK +D+E    + + V A++ A +   +   +++ +LD NDN P  +  
Sbjct: 291 AIDPKTGTVINKKNIDFEKNNAFEIRVQASDGASSPLTSHAKLLIEVLDVNDNAPEISVT 350

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           +    + E A +G  +        ++   DKD   N ++
Sbjct: 351 SLLSSMKEDASVGTAI-------ALVSVVDKDGGKNGMV 382


>gi|344275019|ref|XP_003409311.1| PREDICTED: protocadherin-15 isoform 5 [Loxodonta africana]
          Length = 1935

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT   
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPA 399

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +    N + PL I   DKD E
Sbjct: 400 YQGYILESAPVGSTISDSLNLTTPLRIIVLDKDVE 434



 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F++
Sbjct: 1087 GVIYVNAPLDYETKTSYMLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFSK 1146

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D D+
Sbjct: 1147 KFYIGGVSEDARMFASVLR-------VKATDTDT 1173



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYEVYV 518



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 828

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 829 EENLPAGTTFLK-------IEAKDVD 847


>gi|194674457|ref|XP_001789138.1| PREDICTED: protocadherin-23 [Bos taurus]
          Length = 3360

 Score = 52.4 bits (124), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 12/100 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            ++HP  G + T+KPLD+EA  +  L+V A    G+   CS   V + I+D NDN P F +
Sbjct: 912  SIHPWLGTIRTQKPLDHEAQPVVALTVQA--QLGSSPACSSTEVNITIIDVNDNPPVFPK 969

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   S+   +   +L  T+L    RAEDKDS  N L+
Sbjct: 970  ------ASDEVTVSQSMLPGTAL-YRARAEDKDSGLNGLV 1002



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 4    PVQLFAILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCS 53
            P QL   L+P+       +HP  G +  ++ LDYE+T++YN  V A    +     A  S
Sbjct: 1105 PPQLVYWLEPSTDSAAFGVHPFTGWIYLRRQLDYESTQMYNFRVFAWIPEDKLSQNASTS 1164

Query: 54   VIVHILDRNDNTPYF 68
            V VH+LD NDN+P F
Sbjct: 1165 VTVHVLDENDNSPTF 1179



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV++  + LD+E    Y L +  +++   +   +V VH+LD NDN P F+Q +Y   +SE
Sbjct: 2388 GVVVLVETLDFEEATKYELQIQISDLV-HQTEGTVTVHVLDVNDNPPVFSQDSYQVTISE 2446

Query: 80   AAPIGALVLT 89
              P+G  VLT
Sbjct: 2447 LVPLGHPVLT 2456



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTP 66
           +L+    P    L  + PLD E+  +Y+L + AT+ AG   + +   +++ + D ND  P
Sbjct: 471 VLRSGGSPGVFFLCVEGPLDRESRDLYDLRLVATD-AGLPPLSTEETLLLRVADLNDQPP 529

Query: 67  YFTQLNYTGYVSEAAPIGALVL 88
            F+Q +Y   VSEAA  G +VL
Sbjct: 530 LFSQEHYWASVSEAAAPGTMVL 551



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           ++ P  GV+ T + LD EA     L V A ++      A C V + + D NDN P F + 
Sbjct: 595 SIDPESGVISTTRSLDREAQEAIELRVVAHDLGEPPLSATCLVSIAVDDVNDNEPVFLKQ 654

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   + E AP+G   L        ++A D D+
Sbjct: 655 VYNATLPEHAPVGHCFLQ-------VKASDADA 680



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 20/112 (17%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP  G L+T  PLD E      L+VTA++ A        +++ + +V ILD ND++P F
Sbjct: 1550 IHPSSGTLVTTSPLDRERVPTVVLTVTASDQAVNVTDRRLRSLMAKVV-ILDVNDHSPTF 1608

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
            T      +V E A +G+LV         I A+D D+  N     ++L G+ N
Sbjct: 1609 TSFP-IAHVREDAAVGSLVHH-------ITAQDPDAGRNGRVTFSILSGNEN 1652



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    + L +  +++      +   + V +LD ND++P F +L Y   V
Sbjct: 1871 GELSTTRALDREEVSNFTLVILCSDLGSPPQSSTAQLQVRVLDDNDHSPSFPRLQYQASV 1930

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G  V       LV+ + D+D   N 
Sbjct: 1931 REDAQVGTTV-------LVLSSADEDEGLNG 1954



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE T  + L+V A++      +   V V++LD ND+ P F   N    V 
Sbjct: 2708 GVLSLIKPLDYEETIKFILTVQASDEERKHFSFAIVFVNVLDDNDHAPQFMFPNLNCAVP 2767

Query: 79   EAAPIGALVLTNTSL 93
            E  P+ + + +  +L
Sbjct: 2768 ENLPVFSTICSVNAL 2782



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVI-VHILDRNDNTPYFTQL 71
            + P  G L T + LD EA   + L   A +  + G+++   VI VH+ D NDN+P   Q 
Sbjct: 1970 IDPVAGTLRTSRALDREARSEHVLKAVARDCGVQGSRSTTVVIKVHVTDVNDNSPVLEQN 2029

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                ++S  +P      TN +   ++RA D DS  N 
Sbjct: 2030 PLDIFLSSQSP------TNQTA-AILRASDPDSGPNG 2059



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+    LD EAT  + L + A +       +  +V + +LD +DN P F+ L Y  ++
Sbjct: 2603 GYLVLLHHLDREATASHELVLLAFDHGCPPLSSSATVSIEVLDVDDNPPAFSSLEYYVHI 2662

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+ P G+ +       +V+ A D+D  ++A
Sbjct: 2663 KESTPPGSPI-------IVVSASDRDVGSHA 2686



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  K+P  LD+E  +   L V A +  G KA   V V I D ND+ P+F Q  Y   V
Sbjct: 2181 GEVTVKEPKFLDFEVRKEVQLIVLAESR-GRKAYSKVAVFIQDLNDHPPHFEQSVYQVSV 2239

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE       ++        + A D DS +N L++
Sbjct: 2240 SEGQFYNHHIVQ-------VFATDLDSGSNGLVE 2266



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRI-YNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           + P  G +   +  D E   + Y+L V A +  G  A   V V + D NDN P F  L Y
Sbjct: 705 IDPHDGRICVSQDTDRERDPVTYDLLVKAKDGGGLSAQAFVRVELEDVNDNEPVFNPLTY 764

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              +S  A +G  V+        + A D+DS
Sbjct: 765 VTSLSGQAQLGTEVIN-------VLATDRDS 788



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L T  PLDYE    + L++ A +  G   + S   + + +LD ND  P F Q  Y   
Sbjct: 1662 GFLTTASPLDYEIKSQHILTLLALD-GGTPTLSSSQTLTITVLDVNDEAPVFKQHLYEAS 1720

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1721 VKENQNPGEFVTR-------VEAVDRDSGINSKL 1747


>gi|62751446|ref|NP_001015858.1| cadherin-11 precursor [Xenopus (Silurana) tropicalis]
 gi|59861872|gb|AAH90368.1| cadherin 11, type 2, OB-cadherin (osteoblast) [Xenopus (Silurana)
           tropicalis]
          Length = 794

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 10/98 (10%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           +++P  GV+ T K LD E +  +N+SV AT +     +    V + +LD+NDN P F + 
Sbjct: 432 SINPEDGVIKTTKGLDREESSWHNISVIATELHNRIHETRVPVAIKVLDKNDNAPEFAK- 490

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
            Y  +V E API    LT T++       DKD   N L
Sbjct: 491 PYEAFVCENAPINQEFLTITAI-------DKDDTANGL 521



 Score = 39.3 bits (90), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 12/96 (12%)

Query: 20  GVLLTKKP-LDYEATRIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTPYFTQLNYT 74
           G++ T  P +D EA   Y++ + A +M G          V + + D NDN P F Q  Y 
Sbjct: 215 GIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPPKFPQSAYP 274

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             VSEAA  G  V         I+A+D D   N L+
Sbjct: 275 MSVSEAAVPGEEVGR-------IKAKDPDIGENGLI 303


>gi|344275013|ref|XP_003409308.1| PREDICTED: protocadherin-15 isoform 2 [Loxodonta africana]
          Length = 1945

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT   
Sbjct: 345 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPA 404

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +    N + PL I   DKD E
Sbjct: 405 YQGYILESAPVGSTISDSLNLTTPLRIIVLDKDVE 439



 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F++
Sbjct: 1092 GVIYVNAPLDYETKTSYMLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFSK 1151

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D D+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDTDT 1178



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 472 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYEVYV 523



 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 774 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 833

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 834 EENLPAGTTFLK-------IEAKDVD 852


>gi|426350318|ref|XP_004042725.1| PREDICTED: protocadherin beta-18-like isoform 2 [Gorilla gorilla
           gorilla]
          Length = 790

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E    YN+++T T++     K   ++ V + D NDN P 
Sbjct: 395 VLKPTFKNFYA-LVTEHPLDREVRNEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPI 453

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 454 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 487



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           +HP  G +  K PLD+E  + Y +++ A +        S++V ++D NDN P     + T
Sbjct: 296 IHPISGEVYLKAPLDFEIIQSYIINIQAIDGGSLSGKSSILVRVVDVNDNPPEIAMTSLT 355

Query: 75  GYVSE 79
             + E
Sbjct: 356 SPIPE 360



 Score = 34.7 bits (78), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E     +L++TA +        + ++++  LD NDN P F +  Y  +
Sbjct: 193 YPELVLDQSLDREKESELSLTLTAVDGGSPPRSGTTLINVVVLDINDNAPEFEKPVYEVH 252

Query: 77  VSEAAPIGALVL 88
           V E++P+ +L++
Sbjct: 253 VPESSPLDSLII 264


>gi|410925628|ref|XP_003976282.1| PREDICTED: protocadherin alpha-8-like [Takifugu rubripes]
          Length = 808

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 17/113 (15%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTP 66
           IL P+L      L+TK  LD E    Y+L++TA + AG  ++ S   + V + D NDN P
Sbjct: 397 ILSPSLQETMYSLVTKSALDREQRDKYDLTITAKD-AGQPSLSSEKTITVVVSDVNDNRP 455

Query: 67  YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA------LLDGS 113
            F+   YT Y+SEA   G  V +       ++A D+D   NA      L DGS
Sbjct: 456 EFSLSPYTFYISEANQPGTSVFS-------VKAFDRDDNDNAHVSYHILRDGS 501



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 6/72 (8%)

Query: 21  VLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGY 76
           +L+ +K LD E    ++L +TA  + G K       +++V +LD NDNTP F++  Y+  
Sbjct: 194 ILVLQKSLDRETAASHSLVLTA--LDGGKPPKSGQMNILVKVLDVNDNTPVFSKDVYSVT 251

Query: 77  VSEAAPIGALVL 88
           + E AP+G+ V+
Sbjct: 252 LPENAPLGSAVV 263



 Score = 37.7 bits (86), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 6   QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRND 63
           QLF I     +P  G +  K  +DYE    Y + + A++  +       SVI+ I+D ND
Sbjct: 292 QLFGI-----NPSTGEITVKGLIDYEQKDKYEIEIEASDKGLPPLTTEKSVIIKIIDVND 346

Query: 64  NTPYFTQLNYTGYVSEAAPIGALV 87
           NTP     +++  + E +  G  V
Sbjct: 347 NTPEIEVTSFSSSIPEDSRSGTTV 370


>gi|297484498|ref|XP_002694357.1| PREDICTED: protocadherin-23 [Bos taurus]
 gi|296478818|tpg|DAA20933.1| TPA: dachsous 2-like [Bos taurus]
          Length = 3360

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 12/100 (12%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
            ++HP  G + T+KPLD+EA  +  L+V A    G+   CS   V + I+D NDN P F +
Sbjct: 912  SIHPWLGTIRTQKPLDHEAQPVVALTVQA--QLGSSPACSSTEVNITIIDVNDNPPVFPK 969

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                   S+   +   +L  T+L    RAEDKDS  N L+
Sbjct: 970  ------ASDEVTVSQSMLPGTAL-YRARAEDKDSGLNGLV 1002



 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)

Query: 4    PVQLFAILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCS 53
            P QL   L+P+       +HP  G +  ++ LDYE+T++YN  V A    +     A  S
Sbjct: 1105 PPQLVYWLEPSTDSAAFGVHPFTGWIYLRRQLDYESTQMYNFRVFAWIPEDKLSQNASTS 1164

Query: 54   VIVHILDRNDNTPYF 68
            V VH+LD NDN+P F
Sbjct: 1165 VTVHVLDENDNSPTF 1179



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            GV++  + LD+E    Y L +  +++   +   +V VH+LD NDN P F+Q +Y   +SE
Sbjct: 2388 GVVVLVETLDFEEATKYELQIQISDLV-HQTEGTVTVHVLDVNDNPPVFSQDSYQVTISE 2446

Query: 80   AAPIGALVLT 89
              P+G  VLT
Sbjct: 2447 LVPLGHPVLT 2456



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTP 66
           +L+    P    L  + PLD E+  +Y+L + AT+ AG   + +   +++ + D ND  P
Sbjct: 471 VLRSGGSPGVFFLCVEGPLDRESRDLYDLRLVATD-AGLPPLSTEETLLLRVADLNDQPP 529

Query: 67  YFTQLNYTGYVSEAAPIGALVL 88
            F+Q +Y   VSEAA  G +VL
Sbjct: 530 LFSQEHYWASVSEAAAPGTMVL 551



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQL 71
           ++ P  GV+ T + LD EA     L V A ++      A C V + + D NDN P F + 
Sbjct: 595 SIDPESGVISTTRSLDREAQEAIELRVVAHDLGEPPLSATCLVSIAVDDVNDNEPVFLKQ 654

Query: 72  NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            Y   + E AP+G   L        ++A D D+
Sbjct: 655 VYNATLPEHAPVGHCFLQ-------VKASDADA 680



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 20/112 (17%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
            +HP  G L+T  PLD E      L+VTA++ A        +++ + +V ILD ND++P F
Sbjct: 1550 IHPSSGTLVTTSPLDRERVPTVVLTVTASDQAVNVTDRRLRSLMAKVV-ILDVNDHSPTF 1608

Query: 69   TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
            T      +V E A +G+LV         I A+D D+  N     ++L G+ N
Sbjct: 1609 TSFP-IAHVREDAAVGSLVHH-------ITAQDPDAGRNGRVTFSILSGNEN 1652



 Score = 41.2 bits (95), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L T + LD E    + L +  +++      +   + V +LD ND++P F +L Y   V
Sbjct: 1871 GELSTTRALDREEVSNFTLVILCSDLGSPPQSSTAQLQVRVLDDNDHSPSFPRLQYQASV 1930

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E A +G  V       LV+ + D+D   N 
Sbjct: 1931 REDAQVGTTV-------LVLSSADEDEGLNG 1954



 Score = 38.9 bits (89), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
            GVL   KPLDYE T  + L+V A++      +   V V++LD ND+ P F   N    V 
Sbjct: 2708 GVLSLIKPLDYEETIKFILTVQASDEERKHFSFAIVFVNVLDDNDHAPQFMFPNLNCAVP 2767

Query: 79   EAAPIGALVLTNTSL 93
            E  P+ + + +  +L
Sbjct: 2768 ENLPVFSTICSVNAL 2782



 Score = 38.9 bits (89), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 10/97 (10%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVI-VHILDRNDNTPYFTQL 71
            + P  G L T + LD EA   + L   A +  + G+++   VI VH+ D NDN+P   Q 
Sbjct: 1970 IDPVAGTLRTSRALDREARSEHVLKAVARDCGVQGSRSTTVVIKVHVTDVNDNSPVLEQN 2029

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                ++S  +P      TN +   ++RA D DS  N 
Sbjct: 2030 PLDIFLSSQSP------TNQTA-AILRASDPDSGPNG 2059



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G L+    LD EAT  + L + A +       +  +V + +LD +DN P F+ L Y  ++
Sbjct: 2603 GYLVLLHHLDREATASHELVLLAFDHGCPPLSSSATVSIEVLDVDDNPPAFSSLEYYVHI 2662

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             E+ P G+ +       +V+ A D+D  ++A
Sbjct: 2663 KESTPPGSPI-------IVVSASDRDVGSHA 2686



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 20   GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +  K+P  LD+E  +   L V A +  G KA   V V I D ND+ P+F Q  Y   V
Sbjct: 2181 GEVTVKEPKFLDFEVRKEVQLIVLAESR-GRKAYSKVAVFIQDLNDHPPHFEQSVYQVSV 2239

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            SE       ++        + A D DS +N L++
Sbjct: 2240 SEGQFYNHHIVQ-------VFATDLDSGSNGLVE 2266



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRI-YNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           + P  G +   +  D E   + Y+L V A +  G  A   V V + D NDN P F  L Y
Sbjct: 705 IDPHDGRICVSQDTDRERDPVTYDLLVKAKDGGGLSAQAFVRVELEDVNDNEPVFNPLTY 764

Query: 74  TGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              +S  A +G  V+        + A D+DS
Sbjct: 765 VTSLSGQAQLGTEVIN-------VLATDRDS 788



 Score = 36.6 bits (83), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 11/94 (11%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
            G L T  PLDYE    + L++ A +  G   + S   + + +LD ND  P F Q  Y   
Sbjct: 1662 GFLTTASPLDYEIKSQHILTLLALD-GGTPTLSSSQTLTITVLDVNDEAPVFKQHLYEAS 1720

Query: 77   VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            V E    G  V         + A D+DS  N+ L
Sbjct: 1721 VKENQNPGEFVTR-------VEAVDRDSGINSKL 1747


>gi|5911899|emb|CAB55933.1| hypothetical protein [Homo sapiens]
          Length = 701

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
           +LKP L   Y  L+T++ LD E+   YN+++T T+M     K   ++ V + D NDN P 
Sbjct: 297 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 355

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG+           + A D+DS TNA
Sbjct: 356 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 389



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 25  KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
           K+ LD+EAT  YN+ + AT+  G    C+V + ++D NDN P  T    +    E AP  
Sbjct: 209 KRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPET 268

Query: 85  ALVLTNTSLP 94
            + + + S P
Sbjct: 269 VVAVFSVSDP 278



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
           Y  L+  K LD E     +L++TA +  GA       ++ + +LD NDN P F Q  Y  
Sbjct: 97  YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSFYEV 155

Query: 76  YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
            V E +P+ +LV       +V+ A D D+
Sbjct: 156 QVPENSPLNSLV-------VVVSARDLDA 177



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G+ A+ S   V V +LD NDN+P+         
Sbjct: 416 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 474

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              T  V  AA  G LV         + A D DS  NA L
Sbjct: 475 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 507


>gi|354500158|ref|XP_003512169.1| PREDICTED: protocadherin-3-like isoform 2 [Cricetulus griseus]
          Length = 796

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E+   YN+++T T++   +  A  ++ V + D NDN P 
Sbjct: 391 LLKPTFKN-YYTLVTEGPLDRESRAEYNITITVTDLGTPRLTAQHTITVQVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 450 FTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 483



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +   K LD+E T  YN+ + AT+  G    C+V V +LD NDN P  T    T  + E
Sbjct: 298 GEIRLSKQLDFEVTNHYNIEIAATDGGGLSGKCTVAVQVLDVNDNAPELTIRKLTSPIPE 357



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +          +V + +LD NDN P F Q  Y   
Sbjct: 191 YPELVLDRALDREEQPELTLTLTAVDGGSPPRSGTTTVRIEVLDINDNAPQFVQSLYEVQ 250

Query: 77  VSEAAPIGALVLTNTSLPL 95
           V E +P+ ALVLT +++ L
Sbjct: 251 VPENSPVDALVLTVSAMDL 269



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 19/101 (18%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTPYF------T 69
           G L   + LDYEA + +   V AT+       ++A+  V+V  LD NDN P+        
Sbjct: 510 GQLFALRALDYEALQTFEFRVGATDQGLPELSSQALVRVLV--LDANDNAPFVLYPLQNA 567

Query: 70  QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              YT  +  AA  G LV         + A D DS  NA L
Sbjct: 568 SAPYTELLPRAAEPGYLVTK-------VVAVDHDSGQNAWL 601


>gi|344275021|ref|XP_003409312.1| PREDICTED: protocadherin-15 isoform 6 [Loxodonta africana]
          Length = 1898

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT   
Sbjct: 303 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPA 362

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +    N + PL I   DKD E
Sbjct: 363 YQGYILESAPVGSTISDSLNLTTPLRIIVLDKDVE 397



 Score = 41.2 bits (95), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F++
Sbjct: 1050 GVIYVNAPLDYETKTSYMLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFSK 1109

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D D+
Sbjct: 1110 KFYIGGVSEDARMFASVLR-------VKATDTDT 1136



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 430 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYEVYV 481



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 123 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 732 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 791

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 792 EENLPAGTTFLK-------IEAKDVD 810


>gi|301753515|ref|XP_002912644.1| PREDICTED: protocadherin gamma-A2-like [Ailuropoda melanoleuca]
          Length = 773

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 13/94 (13%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYT 74
           Y  L+T + LD E    YN++VTA +  G K   S    +++ + D NDN P F  ++Y+
Sbjct: 401 YHRLVTTRALDREQFSFYNVTVTAKD--GGKPSLSTEAYILLQVADINDNPPTFPHMSYS 458

Query: 75  GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            Y+ E  P GA +++       + A D DS+ NA
Sbjct: 459 AYIPENNPRGASIIS-------VEAHDPDSDDNA 485



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +   K LD+E   ++ + + A +  G      VIV +LD NDN P F   + T  + E
Sbjct: 299 GDITITKSLDFEDAEVHEIDIEAQDGPGLLTRTKVIVTVLDVNDNAPEFYMTSATSSIPE 358

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             P G ++        +    D+DS  NA +
Sbjct: 359 DCPPGTII-------ALFNVHDRDSGQNAFI 382



 Score = 38.9 bits (89), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYFTQLNYTGYV 77
           L+ +  LD E   +++L + A  + G   V S    + V +LD NDN P FTQ  Y   V
Sbjct: 194 LVLELALDREEKAVHHLVLVA--LDGGSPVRSGTSRIRVTVLDVNDNAPIFTQPEYRVSV 251

Query: 78  SEAAPIGALVLTNTS 92
            E  P+G  +LT T+
Sbjct: 252 PENMPVGTRILTVTA 266


>gi|395736272|ref|XP_003776724.1| PREDICTED: protocadherin beta-13 [Pongo abelii]
          Length = 781

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 17/93 (18%)

Query: 22  LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           LLT++PLD E+   YN+++T T++     K   ++ V + D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLKTQLNMTVLVADVNDNAPAFTQTSYTLFVRE 462

Query: 80  ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
               A  IG+           + A D+DS TNA
Sbjct: 463 NNSPALHIGS-----------VSATDRDSGTNA 484



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
           ++P  G +  KK LD+E  + Y +++ A +       C+V++ ++D ND+ P  T   +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354

Query: 75  GYVSEAAPIGALVLTNTS 92
             + E AP   + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  K LD E      L++TA +           V + +LD NDN P F Q  Y   
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251

Query: 77  VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           +SE +P+G LV+        + A D D+  N 
Sbjct: 252 ISEDSPVGFLVVK-------VSATDADTGVNG 276


>gi|354500154|ref|XP_003512167.1| PREDICTED: protocadherin-3-like [Cricetulus griseus]
          Length = 796

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
           +LKP     Y  L+T+ PLD E+   YN+++T T++   +  A  ++ V + D NDN P 
Sbjct: 391 LLKPTFKN-YYTLVTEGPLDRESRAEYNITITVTDLGTPRLTAQHTITVQVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FTQ +YT +V E    A  IG            I A D DS +NA
Sbjct: 450 FTQTSYTLFVQENNSPALHIG-----------TISATDSDSGSNA 483



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 34/66 (51%)

Query: 14  ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           A+H   G +   K LD+E T  YN+ + AT+  G    C+V V +LD NDN P  T    
Sbjct: 292 AIHGVTGEIRLSKELDFEVTNHYNIEIAATDGGGLSGKCTVAVQVLDVNDNAPELTIRKL 351

Query: 74  TGYVSE 79
           T  + E
Sbjct: 352 TSPIPE 357



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 19  YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
           Y  L+  + LD E      L++TA +          +V + ++D NDN P F Q  Y   
Sbjct: 191 YPELVLDRALDREEQPELTLTLTAVDGGSPPRSGATTVRIEVVDINDNAPQFVQSLYEVQ 250

Query: 77  VSEAAPIGALVLTNTSLPL 95
           V E +P+ ALVLT +++ L
Sbjct: 251 VPENSPVDALVLTVSAMDL 269



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 17/100 (17%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
           G L   + LDYEA + +   V AT+  G  A+ S   V V +LD NDN P+         
Sbjct: 510 GQLFALRALDYEALQTFEFRVGATDQ-GLPALSSQALVRVLVLDANDNAPFVLYPLQNAS 568

Query: 71  LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           + YT  +  AA  G LV         + A D+DS  NA L
Sbjct: 569 VPYTELLPRAAEPGYLVTK-------VVAVDRDSGQNAWL 601


>gi|344275031|ref|XP_003409317.1| PREDICTED: protocadherin-15 isoform 11 [Loxodonta africana]
          Length = 1915

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
           +HP    L   +P++ +  + ++L + A    G    A  S+ + ILD N+ +PYFT   
Sbjct: 318 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPA 377

Query: 73  YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
           Y GY+ E+AP+G+ +    N + PL I   DKD E
Sbjct: 378 YQGYILESAPVGSTISDSLNLTTPLRIIVLDKDVE 412



 Score = 41.2 bits (95), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
            GV+    PLDYE    Y L V A ++    A            V + I D ND+ P F++
Sbjct: 1065 GVIYVNAPLDYETKTSYMLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFSK 1124

Query: 71   LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
              Y G VSE A + A VL        ++A D D+
Sbjct: 1125 KFYIGGVSEDARMFASVLR-------VKATDTDT 1151



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 26  KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           +P+D E  + Y  S+TA +         V + ++D NDNTP F +++Y  YV
Sbjct: 445 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYEVYV 496



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 49  KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
           K V +VI H     + DRNDN+P F   +Y   V+E  P+G  + T  S
Sbjct: 101 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 149



 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G + T   L+ E    Y L V AT+ A     +  ++ + +LD +DN+P FT   YT  V
Sbjct: 747 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVVV 806

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKD 103
            E  P G   L        I A+D D
Sbjct: 807 EENLPAGTTFLK-------IEAKDVD 825


>gi|187954825|gb|AAI41148.1| Pcdhb5 protein [Mus musculus]
          Length = 792

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
           G +  KK LD+E T  Y++ + AT+  G     SV++ ++D NDN P  T  + T  V E
Sbjct: 298 GEIRLKKKLDFEKTESYHVEIEATDGGGLSGKGSVVIEVVDVNDNAPELTISSLTSSVPE 357

Query: 80  AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
            AP         ++  +IR  D+D+  N 
Sbjct: 358 NAP--------ETVVAIIRIRDRDAGENG 378



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 18/105 (17%)

Query: 10  ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPY 67
           ILKP+    Y  L+T+ PLD E+   YN+++T +++   +     ++ V + D NDN P 
Sbjct: 391 ILKPSYKNFY-TLVTESPLDRESRAEYNITITVSDLGTPRLTTQHTITVQVSDVNDNAPA 449

Query: 68  FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
           FT+ +YT +V E    A  IG            I A D DS +NA
Sbjct: 450 FTRTSYTMFVRENNSPALHIG-----------TISATDSDSGSNA 483


>gi|395845723|ref|XP_003795574.1| PREDICTED: protocadherin Fat 4 isoform 1 [Otolemur garnettii]
          Length = 4982

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
            AL+   G+L   K LDYE  + + + ++A +         CSV V+++D NDN+P F   
Sbjct: 3140 ALNSSTGILTLAKALDYELCQKHEMMISAVDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3199

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   V E AP G  V+        + A D DS TNA++
Sbjct: 3200 EYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3231



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 7/96 (7%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            L+P  GV    + LD+EA + Y L+V A +  G      V  +ILD NDN P F+  +Y+
Sbjct: 1891 LNPVTGVFNLTRVLDFEAQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
              + E  P+G+ V       LV    D D   N+ L
Sbjct: 1951 TSLMENLPLGSTV-------LVFNVTDADDGINSQL 1979



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
            ++ P  G +   K LD+E   +Y L++TA +       +  SV++H+ D NDN P F   
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +    + E  PIG  V++       + A D D++ N  L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
            G + + +PLD E    Y L+V +++        S  VI++ILD NDN P F+Q+ ++ +V
Sbjct: 2725 GEIRSIRPLDREKVSQYMLTVKSSDKGSPSQSTSIKVIINILDENDNAPRFSQI-FSAHV 2783

Query: 78   SEAAPIGALV 87
             E +P+G  V
Sbjct: 2784 PENSPLGYTV 2793



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 15/108 (13%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
            +P  LFAI     +   G +    PLD  A   Y + + A++M   +   S+I  V++ D
Sbjct: 935  NPKNLFAI-----NEKNGNISLLGPLDVHAGS-YQIEILASDMGVPQLSSSLILTVYVHD 988

Query: 61   RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
             NDN+P F QL+Y   +SE+ P+ +           ++A DKDS  N 
Sbjct: 989  VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
           L P  G L T   LD E    Y+L V AT++      ++  + V +LD NDN+P F  + 
Sbjct: 634 LDPVSGRLSTVSSLDREEQAFYSLLVVATDLGSPPQSSMVRINVSLLDINDNSPVFYPVQ 693

Query: 73  YTGYVSEAAPIGALVLT 89
           Y  ++ E  P G+ + T
Sbjct: 694 YFAHIQENEPGGSYITT 710



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
           + P  G++  ++PLD+EA R Y+L++ A +            ++ +LD NDN P     Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTLQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357

Query: 68  FTQLNYTGYVSEAAPIGALV 87
           F   +    V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 28   LDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LDYE T  Y+L + A +       + C++ + ILD NDNTP F +      V E   IG 
Sbjct: 1273 LDYETTPAYSLIIQAVDSGTISLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332

Query: 86   LVLTNTSLPLVIRAEDKDSETNALL 110
            LV +       + A D DS  NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 16/92 (17%)

Query: 28  LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
           LD E    YNL+V+ ++  GA          +V S+++ + D ND+ P F Q  Y   +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPAAAVQARSSVASLVIFVNDINDHPPVFAQQVYRVNLS 485

Query: 79  EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
           E AP G+ V         + A D DS  NA L
Sbjct: 486 EEAPPGSYVCG-------VSATDGDSGLNANL 510



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 18   PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
            P G L  K  LD E    Y L V A + A     A  +V V + D NDN P F   NYT 
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLLVVAFDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107

Query: 76   YVSEAAPIGALV 87
            Y  E    G+ V
Sbjct: 1108 YFEEEQKAGSFV 1119



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
            + P  GV+ T+  LD+E  + Y+L+V A N+   +  +  +V + +   N+  P F    
Sbjct: 3245 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFTTVNIQLKGTNEYVPRFVSKL 3304

Query: 73   YTGYVSEAAPIGALV 87
            Y   +SEAAP G +V
Sbjct: 3305 YYFEISEAAPKGTIV 3319



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
           GV+ T+  LD E    Y L + AT+    ++    IV I  LD  DN P F+Q  Y+  V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQAAYSFVV 802

Query: 78  SEAAPIGALV 87
            E   +G  V
Sbjct: 803 FENVALGYQV 812



 Score = 38.5 bits (88), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 11  LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
           L P+    +  L++K  LD E T  Y L V   +    K      V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250

Query: 69  TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
              +Y   V E A +G+ VL        + A D D  TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283



 Score = 37.7 bits (86), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
            G L   + LD E+   + L+VTAT+        +  +H++  D NDN P F    Y   +
Sbjct: 2314 GELRVIQSLDRESKEQFVLTVTATDSGSPALTGTGTIHVIVDDVNDNVPTFASKMYFTTI 2373

Query: 78   SEAAPIGALVL 88
             E AP G  VL
Sbjct: 2374 PEDAPTGTDVL 2384



 Score = 37.0 bits (84), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            ++P  G ++  +PL+ E T  + + V+A + +G      V + + D NDN P F++ +Y 
Sbjct: 2822 INPSTGDIVISRPLNREDTDRFRIRVSAHD-SGWTVSTDVTIFVTDVNDNAPRFSRPSYY 2880

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
                E   IG+ V         + A D D  +N 
Sbjct: 2881 LDCPELTEIGSRVTQ-------VSATDPDEGSNG 2907



 Score = 35.8 bits (81), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 13/97 (13%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATN---MAGAK--AVCSVIVHILDRNDNTPYFTQLNYT 74
            GVL   K LD E+   YNL V   +   +A ++  +   V + +LD NDN P F     T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQLAASRFTSTAQVSIILLDVNDNPPAFLSPKLT 2057

Query: 75   GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
             Y+ E  PI  +V          +A D DS  N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086



 Score = 35.4 bits (80), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 28   LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
            LD E    Y L+V AT+        S  V+V +LD NDN P F Q  Y   ++E      
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166

Query: 86   LVLTNTSLPLVIRAEDKDSETNA 108
              LT T + + + A D D  TN 
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNG 2187



 Score = 34.7 bits (78), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
            +++P  G +     LD E   IYNLSV A +     A    +++V + D NDN P  T  
Sbjct: 3456 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSATLLVTLEDINDNGPMLTI- 3514

Query: 72   NYTGYVSEAAPIGALVLT 89
               G V E    G LV+T
Sbjct: 3515 -SEGEVMENKRPGTLVMT 3531


>gi|321479216|gb|EFX90172.1| hypothetical protein DAPPUDRAFT_6 [Daphnia pulex]
          Length = 3261

 Score = 52.4 bits (124), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
            GVL   +PLD E+   Y L+VTAT+    A+A   ++ +H+ D NDN P F +  Y   V
Sbjct: 1533 GVLAVTRPLDRESQNRYALNVTATDHGRPARASWQLVHIHVEDINDNPPRFVRPLYEAAV 1592

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            +E +P G  V+        + A DKD  TN  L
Sbjct: 1593 AENSPAGTFVVK-------VSATDKDVGTNGNL 1618



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
            + P  GV+  KKPLD+E +  +   V A++    +   A+ ++ V + D NDN P F   
Sbjct: 2583 VDPSTGVISLKKPLDFEMSGEHRFIVRASDGHSTQPLSAIATIAVKVEDENDNGPAFPVG 2642

Query: 72   NYTGYVSEAAPIGALVLT 89
            +Y  +V+E AP G +V T
Sbjct: 2643 SYLEFVAENAPAGTVVFT 2660



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G +L  K +D E   ++NL V A +       +   V++H+ D NDN P F Q  Y   V
Sbjct: 2483 GEILLVKTVDREEISVFNLKVLAMDRGSPARNSTADVVIHVDDVNDNPPVFNQTLYEVKV 2542

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            SEA  IG  +L        + A D+D + NA L
Sbjct: 2543 SEAQAIGTALLR-------VAATDRDHDENARL 2568



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 13/108 (12%)

Query: 3    HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
            +P ++F+I + +     G +   +PLD+E  + Y L V A++MA      S+ V++LD N
Sbjct: 2263 NPDRMFSIDRFS-----GKITLAQPLDHERQQQYTLRVQASDMAHITE-TSITVNVLDEN 2316

Query: 63   DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            DN P F+  NY   + E    G  VL+       I A D D   NA +
Sbjct: 2317 DNAPVFSVQNYRASLPELTEPGYAVLS-------INATDADKGENARV 2357



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 14   ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
             + P  G L  KK LD E    Y L+V AT+  +    A  +V V + D NDN P FT+ 
Sbjct: 997  GIFPNSGSLYLKKSLDREMRDRYTLTVVATDNGLPPGSAAATVNVFVNDANDNDPVFTRD 1056

Query: 72   NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
             Y   + E    GALV        V+ A DKD + NA L
Sbjct: 1057 VYQFTIEENLEKGALV-------GVVSATDKDLDANAAL 1088



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 15   LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
            + P  G ++T+   DYEA   Y LS+ A+++ G  A  +V + +  R++  P FT+ +Y 
Sbjct: 2689 IDPTTGTIVTQSVFDYEAKNRYYLSIQASDVGGQTASVNVQIDVESRDEFAPEFTESSYR 2748

Query: 75   GYVSEAAPIG 84
              V   A +G
Sbjct: 2749 FSVPSDADVG 2758



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 20   GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
            G + TK  LD+E    Y L+V+  +      + V  + + +LD NDN P F+  ++   V
Sbjct: 1215 GTIRTKVTLDHEERAFYRLAVSVKDHGRPPKETVRQLQIEVLDLNDNRPTFSTSSFAFKV 1274

Query: 78   SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
             E  PIG  + T       + AED+++  N
Sbjct: 1275 VEGVPIGQEIGT-------VIAEDREAGEN 1297



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 10/91 (10%)

Query: 23   LTKKPLDYEATRIYNLSVTATNM---AGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
            L+ +PLD E    Y L + A +    +  +  C++ V + D ND+ P FTQ  YT  ++E
Sbjct: 1744 LSSRPLDRELKDRYYLIIAAQDRGVPSPRQGFCNITVSVDDENDSDPRFTQNRYTATLAE 1803

Query: 80   AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
                  +V+T       ++A D D   NA +
Sbjct: 1804 NVQPDTIVMT-------VQATDADRGHNAKI 1827



 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 15   LHPPY-GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQL 71
            + PP+ G++ T   LD E    Y L++ AT+    +    C++ ++I+D NDN P F   
Sbjct: 2166 IEPPFSGIVKTNIVLDREIRDFYRLTIIATDEGSPQLTGTCTLRINIVDVNDNQPTFPPH 2225

Query: 72   NYTGYVSEAAPIGALVLTNTS 92
            +    VSE + +G ++ T T+
Sbjct: 2226 SVVS-VSEGSEVGTVITTITA 2245



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 25   KKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
            +K LD+E+     L V A    GA       +V V +LD+NDN P FTQ +YT  V E  
Sbjct: 2071 QKRLDFESAPHLRLIVVA-QAEGASPLYGYATVWVDLLDQNDNAPRFTQDSYTSAVWEGN 2129

Query: 82   PIGALVLTNTSLPLVIRAEDKDSETNA 108
              G  V+        + A D D   NA
Sbjct: 2130 NKGTFVMQ-------VSATDGDMGANA 2149



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 28  LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
           LD E T  Y+L + A +      +   +V + I D NDN P F Q  Y   V+E A IG 
Sbjct: 168 LDRETTAFYSLVIEALDGGNPPLRGFMTVNITIQDVNDNQPIFNQSRYFASVAENATIGT 227

Query: 86  LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
            VL        + A D D+  N  +  S N
Sbjct: 228 SVLQ-------VFATDTDAGDNGRITYSIN 250



 Score = 38.5 bits (88), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 27/59 (45%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
           ++P  G +     LD+E   IY   + AT+  G      V + ++D NDN P F    Y
Sbjct: 585 VNPSSGEICISAALDHEKRNIYEFPILATDRGGLSTTAMVKIQVVDVNDNRPTFYPREY 643



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 14/112 (12%)

Query: 1   MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHI 58
           +++P  LF I      P  G ++  + LD+E T+ Y L + A +      ++  ++ + +
Sbjct: 884 LTNPDGLFKI-----DPRQGFIMLTRKLDFETTQKYALVIGAQDKGSPPLRSNLTLNIEV 938

Query: 59  LDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
            D NDN P F +  Y   V+E+  + +  L        + A D D+  NA L
Sbjct: 939 QDVNDNPPTFEKNEYQVNVAESLAVNSQFLQ-------VNAIDLDTGNNARL 983



 Score = 37.4 bits (85), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 20   GVLLTKKPLDYEATR-IYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
            GV+ T + L +   + +  L V A +       +V +V + I D N+N P F+Q  YT +
Sbjct: 2376 GVIYTNQTLTFNPRQPVLQLVVKAQDRGRPSLSSVVAVRIQIADVNNNAPKFSQDVYTAH 2435

Query: 77   VSEAAPIGALVL 88
            +SE A  G +VL
Sbjct: 2436 ISEDATRGTIVL 2447



 Score = 36.6 bits (83), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)

Query: 20  GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
           G++ T+K +D E   +  +++ A++          +V V I D NDN P F Q  Y   V
Sbjct: 484 GLITTRKHIDCETDPVPQITILASDAGRPSLTGTATVRVTIRDVNDNEPIFDQSFYNVSV 543

Query: 78  SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
            E   +G  VL        + A D D   NA+++
Sbjct: 544 REDEAVGHCVLK-------VSATDPDCGVNAIVN 570



 Score = 36.2 bits (82), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 20/110 (18%)

Query: 15  LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTP----Y 67
           + P  GV+   +PLD+E   ++ L V A++ +G +A+ +   V + + D NDN P     
Sbjct: 262 IDPLTGVISVNRPLDFETKEVHELVVVASD-SGVQALETTAFVSIRVTDVNDNQPTINLI 320

Query: 68  FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE-----TNALLDG 112
           F   + T  +SE A  G  V         I   D DS+      N  LDG
Sbjct: 321 FLSDDATPKISEDAQPGEFVAR-------ISVNDPDSKEEYANVNVTLDG 363


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,787,911,529
Number of Sequences: 23463169
Number of extensions: 62527370
Number of successful extensions: 187318
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4117
Number of HSP's successfully gapped in prelim test: 3072
Number of HSP's that attempted gapping in prelim test: 138397
Number of HSP's gapped (non-prelim): 44098
length of query: 115
length of database: 8,064,228,071
effective HSP length: 82
effective length of query: 33
effective length of database: 6,140,248,213
effective search space: 202628191029
effective search space used: 202628191029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)