BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7564
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 26 KPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
+PLD EA Y L V T+++G + + ++D+NDN P F + Y G+V E +P
Sbjct: 63 RPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPT 122
Query: 84 GALVLTNTSLPLVIRAEDKDSETNALL 110
G V+ T+ D S NALL
Sbjct: 123 GTTVMRMTAF-----DADDPSTDNALL 144
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 14 ALHPPYGV---------LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
A +PP GV +L +PLD E Y LS A + G+ + + ++++D+N
Sbjct: 49 ADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQN 108
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
DN P FTQ + G V E G V + + A D+D ++L
Sbjct: 109 DNRPKFTQDVFRGSVREGVQPGTQV-------MAVSATDEDDNIDSL 148
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 28 LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE---AAP 82
LD E Y L+V AT++ GA I+ I D NDN P F YT V E
Sbjct: 185 LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFE 244
Query: 83 IGALVLTNTSLP 94
+ L +T+ +P
Sbjct: 245 VQRLSVTDLDMP 256
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN 44
G+L T K LD+E + Y L +T N
Sbjct: 286 GILTTAKGLDFELRKQYVLQITVEN 310
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 14 ALHPPYGV---------LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
A +PP GV +L +PLD E Y LS A + G+ + + ++++D+N
Sbjct: 198 ADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQN 257
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
DN P FTQ + G V E G V + + A D+D ++L
Sbjct: 258 DNRPKFTQDVFRGSVREGVQPGTQV-------MAVSATDEDDNIDSL 297
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 28 LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE---AAP 82
LD E Y L+V AT++ GA I+ I D NDN P F YT V E
Sbjct: 334 LDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENEIGFE 393
Query: 83 IGALVLTNTSLP 94
+ L +T+ +P
Sbjct: 394 VQRLSVTDLDMP 405
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN 44
G+L T K LD+E + Y L +T N
Sbjct: 435 GILTTAKGLDFELRKQYVLQITVEN 459
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 17 PPYGVLLTKKPLDYEATR---IYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFTQLN 72
P G++ K LD+E R +Y+L VTAT +G + + + D NDN P F +
Sbjct: 269 PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPD 328
Query: 73 YTGY-VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
Y + V E P+G +L ++A D DS +NA ++
Sbjct: 329 YQAHNVDEDIPLGTSILR-------VKAMDSDSGSNAEIE 361
Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 20 GVLLTKKPLDYE---ATRIYNLSVTATNM---AGAKAVCS--VIVHILDRNDNTPYFTQL 71
G + KK DYE + + V TNM AG K + VI+ + D ND PYF
Sbjct: 55 GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF--- 111
Query: 72 NYTGYVSEAAPIGALVLTNT--SLPL-VIRAEDKDSETN 107
++ P+ A+V N + P+ ++A D D++ N
Sbjct: 112 -----INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN 145
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 49 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 103
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 104 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 142
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 28 LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYF 68
LD E+ Y L V A ++ G ++ + D NDN P F
Sbjct: 181 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVF 223
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 48 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 102
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 103 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 141
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 49 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 103
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 104 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 142
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 33.1 bits (74), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 28 LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE---AAP 82
LD E+ Y L V A ++ G ++ + D NDN P F Y G V E A
Sbjct: 179 LDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNAR 238
Query: 83 IGALVLTNTSLP 94
I L +T+ P
Sbjct: 239 IATLKVTDDDAP 250
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 49 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 103
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 104 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 142
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 46 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 100
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 101 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 139
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
++P G L KPLD E ++L A ++ G + ++++++D NDN P F
Sbjct: 53 INPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV 112
Query: 73 YTGYVSEAAPIGALVLTNTSL 93
+ G V E + G V+T T++
Sbjct: 113 WNGSVPEGSKPGTYVMTVTAI 133
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD EA Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
++P G L KPLD E ++L A ++ G + ++++++D NDN P F
Sbjct: 53 INPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV 112
Query: 73 YTGYVSEAAPIGALVLTNTSL 93
+ G V E + G V+T T++
Sbjct: 113 WNGSVPEGSKPGTYVMTVTAI 133
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDR 61
PV +F I + G L +PLD EA Y L A + G +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G + + LD E Y L V T+ +G + + V ++D+NDN P F + Y G+V
Sbjct: 58 GSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHV 117
Query: 78 SEAAPIGALVLTNTSL 93
E +P G V+ T+
Sbjct: 118 MEGSPTGTTVMRMTAF 133
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
++P G L KPLD E ++L A ++ G + ++++++D NDN P F
Sbjct: 53 INPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV 112
Query: 73 YTGYVSEAAPIGALVLTNTSL 93
+ G V E + G V+T T++
Sbjct: 113 WNGSVPEGSKPGTYVMTVTAI 133
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 28 LDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
LD E + Y L + AT+M G + ++ + D NDN P FT + + G V E
Sbjct: 178 LDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPE 234
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA--------GAKAVCSVIVHILDRNDNTPYF 68
G++ KP+D+E R++ L+V A N ++ +V V ++D N+N PYF
Sbjct: 283 GLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYF 338
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDR 61
PV +F I + G L +PLD E Y L ++N + +++ + D+
Sbjct: 47 PVGVFIIERET-----GWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V E A G V+ + A D D + N
Sbjct: 102 NDNKPEFTQEVFKGSVMEGALPGTSVME-------VTATDADDDVN 140
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
G + K LD E +Y L A N + V I+ I D NDN P FT+ YT
Sbjct: 55 GDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTAT 114
Query: 77 VSEAAPIGALVLTNTS 92
V E A +G V+ T+
Sbjct: 115 VPEMADVGTFVVQVTA 130
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
A+ P GV+ ++PLD E + + + ++ G V + + D NDN P F Y
Sbjct: 56 AVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVNDNAPTFHNQPY 114
Query: 74 TGYVSEAAPIGALVL 88
+ + E P+G +
Sbjct: 115 SVRIPENTPVGTPIF 129
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV 54
A+ G++ + LDYE T+ Y L+V AT+ + + ++
Sbjct: 156 AIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTL 196
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
A+ P GV+ ++PLD E + + + ++ G V + + D NDN P F Y
Sbjct: 57 AVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVNDNAPTFHNQPY 115
Query: 74 TGYVSEAAPIGALVL 88
+ + E P+G +
Sbjct: 116 SVRIPENTPVGTPIF 130
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV 54
A+ G++ + LDYE T+ Y L+V AT+ + + ++
Sbjct: 157 AIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTL 197
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
A+ P GV+ ++PLD E + + + ++ G V + + D NDN P F Y
Sbjct: 57 AVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGDVNDNAPTFHNQPY 115
Query: 74 TGYVSEAAPIGALVL 88
+ + E P+G +
Sbjct: 116 SVRIPENTPVGTPIF 130
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV 54
A+ G++ + LDYE T+ Y L+V AT+ + + ++
Sbjct: 157 AIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTL 197
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 49 KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
K V +VI H + DRNDN+P F +Y V+E P+G + T S
Sbjct: 103 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 151
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
A+ P GV+ ++PLD E + + + ++ G V + + NDN P F Y
Sbjct: 57 AVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGV-ITRKVNIQVGGVNDNAPTFHNQPY 115
Query: 74 TGYVSEAAPIGALVL 88
+ + E P+G +
Sbjct: 116 SVRIPENTPVGTPIF 130
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV 54
A+ G++ + LDYE T+ Y L+V AT+ + + ++
Sbjct: 157 AIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTL 197
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYF 68
++P G L KPLD E ++L A ++ G + ++++++D NDN P F
Sbjct: 55 INPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 16 HPPYGVLLTKKP---------LDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDN 64
PP+G+ + K LD E T + L+ A + G + + + +LD NDN
Sbjct: 57 EPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDN 116
Query: 65 TPYFTQ 70
P FTQ
Sbjct: 117 EPVFTQ 122
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNM 45
GV+ +KPLD+E + Y L V A N+
Sbjct: 274 GVIRLRKPLDFETKKSYTLKVEAANI 299
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 17/109 (15%)
Query: 14 ALHPPYGVLLTKKP-LDYEATRIYNLSVTATNMAGAKAVCS----VIVHILDRNDNTPYF 68
++ P ++ T P +D EA Y + + A +M G S + V + D NDN P F
Sbjct: 156 SIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKF 215
Query: 69 TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA-----LLDG 112
Q Y V E +G + ++A D+D NA ++DG
Sbjct: 216 AQSLYHFSVPEDVVLGTAIGR-------VKANDQDIGENAQSSYDIIDG 257
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 26 KPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSEAAP 82
K LD E Y L+ A + K + I+ + D NDN P F Y V E +
Sbjct: 61 KRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSI 120
Query: 83 IGALV 87
+G V
Sbjct: 121 LGTSV 125
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
G + + LD E Y L+ + +++ I+ + D NDN P F Q + G
Sbjct: 53 GDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGS 112
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E + +G V T AED D T A
Sbjct: 113 VPEMSRLGTSVTKVT-------AEDADDPTVA 137
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 19/99 (19%)
Query: 20 GVLLTKKPLDYEA---TRIYNLSVTATNM---AGAKAV--CSVIVHILDRNDNTPYFTQL 71
G + KK DYE + + V TNM AG K VI+ + D ND PYF
Sbjct: 50 GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF--- 106
Query: 72 NYTGYVSEAAPIGALVLTNT--SLP-LVIRAEDKDSETN 107
++ P+ A+V N + P ++A D D++ N
Sbjct: 107 -----INRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN 140
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 58 ILDRNDNTPY-FTQLNYTGYVSEAAPIGAL----VLTN-----TSLPLVIRAEDKDSETN 107
IL R D P+ FTQ+ YTG+ P A +LTN T++P+V+ T
Sbjct: 175 ILQRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVKNSPTTVPVVVHCSAGIGRTG 234
Query: 108 ALL 110
L+
Sbjct: 235 TLI 237
>pdb|3OKZ|A Chain A, Crystal Structure Of Protein Gbs0355 From Streptococcus
Agalactiae, Northeast Structural Genomics Consortium
Target Sar127
pdb|3OKZ|B Chain B, Crystal Structure Of Protein Gbs0355 From Streptococcus
Agalactiae, Northeast Structural Genomics Consortium
Target Sar127
Length = 306
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 46 AGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNT-SLPLVIRAED 101
GA+ + +LD N YF Q+N G V +G + +TN P+ I A +
Sbjct: 92 GGAEXALXTVQDLLDIN--VDYFXQINXQGLVDLVNAVGGITVTNKFDFPISIAANE 146
>pdb|3K7N|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
Distinct Activities Highlight The Disulfide Patterns In
The D Domain Of Adamalysin Family Proteins
Length = 397
Score = 28.9 bits (63), Expect = 0.73, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 61 RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLV 96
RNDN T +++ G A IG+L TN S+ +V
Sbjct: 94 RNDNAQLLTGIDFNGNTVGRAYIGSLCKTNESVAIV 129
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
G + K LD E Y L A + + + IV + D NDN P F Y
Sbjct: 56 GNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHAN 115
Query: 77 VSEAAPIGALVLTNTS 92
V E + +G V+ T+
Sbjct: 116 VPERSNVGTSVIQVTA 131
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
NDN P F + ++ E AP+G V+ + A D D +NA +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQ-------LHATDADIGSNAEI 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,308,378
Number of Sequences: 62578
Number of extensions: 115169
Number of successful extensions: 281
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 61
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)