BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7564
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2
Length = 4588
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 66/96 (68%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G ++T+K LD+E IY L + TNMAG +V+VH+ D NDN P F Q YT
Sbjct: 1712 INPHSGTIITQKALDFETLPIYTLIIQGTNMAGLSTNTTVLVHLQDENDNAPVFMQAEYT 1771
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
G +SE+A I ++VLT+ ++PLVIRA D D ++NALL
Sbjct: 1772 GLISESASINSVVLTDRNVPLVIRAADADKDSNALL 1807
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GV+ PLD+EA Y LS+ AT+ + GA A V + + D NDN P F Q +Y +S
Sbjct: 2234 GVINVIAPLDFEAHPAYKLSIRATDSLTGAHAEVFVDIIVDDINDNPPVFAQQSYAVTLS 2293
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
EA+ IG V+ +RA D DSE N
Sbjct: 2294 EASVIGTSVVQ-------VRATDSDSEPN 2315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 8 FAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNT 65
++ K L P G L T + LD+EA + L+V ++ + ++V++ D ND+
Sbjct: 1500 LSLKKFRLDPATGSLYTSEKLDHEAVHQHTLTVMVRDQDVPVKRNFARIVVNVSDTNDHA 1559
Query: 66 PYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
P+FT +Y G V E+A +G++VL T+L DKD NA
Sbjct: 1560 PWFTASSYKGRVYESAAVGSVVLQVTAL-------DKDKGKNA 1595
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
G++ +KPLD E +Y LS+ A + + A +VIV +LD NDN P F Y
Sbjct: 3179 GIIQLEKPLDRELQAVYTLSLKAVDQGLPRRLTATGTVIVSVLDINDNPPVFEYREYGAT 3238
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
VSE +G VL + A +D E NA
Sbjct: 3239 VSEDILVGTEVLQ-------VYAASRDIEANA 3263
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 14/101 (13%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G + + LDYE++ Y L+V AT+ V +V V++ D NDNTP F+Q YT +
Sbjct: 3285 GAVFIIENLDYESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTYTTVI 3344
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
SE A + V+T + A+D D +N +++DG+
Sbjct: 3345 SEDAVLEQSVIT-------VMADDADGPSNSHIHYSIIDGN 3378
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
G L +K LD+E T+ Y S+ A A V + + D NDN+P F Y +
Sbjct: 2758 GRLKLEKSLDHETTKWYQFSILARCTQDDHEMVASVDVSIQVKDANDNSPVFESSPYEAF 2817
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E P G+ V+ IRA D DS TN
Sbjct: 2818 IVENLPGGSRVIQ-------IRASDADSGTNG 2842
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%)
Query: 12 KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
K L+P G L T PLD E +Y+L V AT+ G S+++ + D NDN P F+
Sbjct: 3069 KFKLNPDTGELKTSTPLDREEQAVYHLLVRATDGGGRFCQASIVLTLEDVNDNAPEFSAD 3128
Query: 72 NYTGYVSEAAPIGALV 87
Y V E G L+
Sbjct: 3129 PYAITVFENTEPGTLL 3144
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLN 72
+ P G + K LD E Y L+V A++ V + V+I D NDN P F++ N
Sbjct: 3385 IDPVRGEVKVTKLLDRETISGYTLTVQASDNGSPPRVNTTTVNIDVSDVNDNAPVFSRGN 3444
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAED 101
Y+ + E P+G VL LV+ ED
Sbjct: 3445 YSVIIQENKPVGFSVLQ-----LVVTDED 3468
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
G++ + LDYE +R + + V A + G + S V V + D NDN P F Q Y
Sbjct: 2340 GLISLLRTLDYEQSRQHTIFVRAVD-GGMPTLSSDVIVTVDVTDLNDNPPLFEQQIYEAR 2398
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
+SE AP G V ++A D DS
Sbjct: 2399 ISEHAPHGHFV-------TCVKAYDADS 2419
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 25 KKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
KKPLD E Y L++TAT+ +KA+ V V +LD NDN+P + Y+ + E
Sbjct: 2981 KKPLDREKRDNYLLTITATDGTFSSKAI--VEVKVLDANDNSPVCEKTLYSDTIPEDVLP 3038
Query: 84 GALVLTNTSLPLVIRAEDKDSETNA 108
G L++ I A D D +NA
Sbjct: 3039 GKLIMQ-------ISATDADIRSNA 3056
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
A++ G + T K LD+E Y + V A++ + S V V + D ND+ P FT
Sbjct: 2861 AINMETGWITTLKELDHEKRDNYQIKVVASDHGEKIQLSSTAIVDVTVTDVNDSPPRFTA 2920
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
Y G VSE P G ++ ++ D DSE
Sbjct: 2921 EIYKGTVSEDDPQGGVI-------AILSTTDADSE 2948
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 14 ALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQ 70
++HP G++ T + LD E + L VT T+ + VIV ILD NDN P F Q
Sbjct: 1188 SIHPKTGLITTTSRKLDREQQDEHILEVTVTDNGSPPKSTIARVIVKILDENDNKPQFLQ 1247
Query: 71 LNY 73
Y
Sbjct: 1248 KFY 1250
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
G+L PLD E T Y L++T ++ + ++H++ D NDN P F Q +Y V
Sbjct: 772 GMLKILSPLDRETTDKYTLNITVYDLGIPQKAAWRLLHVVVVDANDNPPEFLQESYFVEV 831
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKD 103
SE + + ++ + A DKD
Sbjct: 832 SEDKEVHSEIIQ-------VEATDKD 850
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G + T + LD E A ++ ++ + A + G A C+V V + D NDN P F Y +
Sbjct: 2546 GQIFTLEKLDRETPAEKVISVRLMAKDAGGKVAFCTVNVILTDDNDNAPQFRATKYEVNI 2605
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+A G V+ + A D D +NA
Sbjct: 2606 GSSAAKGTSVVK-------VLASDADEGSNA 2629
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G ++ KPLD E YNL+V AT+ + V + ++D ND+ P F+ Y + E
Sbjct: 1409 GTIIVAKPLDAEQKSNYNLTVEATD-GTTTILTQVFIKVIDTNDHRPQFSTSKYEVVIPE 1467
Query: 80 -AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
AP + L I A D+D E N L+
Sbjct: 1468 DTAPETEI--------LQISAVDQD-EKNKLI 1490
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ +P+ + + L VT ++ KA V+V +L N N P FTQ Y E
Sbjct: 418 GLISILEPVKRQQAAHFELEVTTSDR---KASTKVLVKVLGANSNPPEFTQTAYKAAFDE 474
Query: 80 AAPIGALVLT 89
PIG V++
Sbjct: 475 NVPIGTTVMS 484
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 2 SHPVQLFAILKPALHPPY------GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAV 51
S+ + ++ I++P++H + G + T LDYE T I++ +V +M A+
Sbjct: 1803 SNALLVYHIVEPSVHTYFAIDSSTGAIHTVLSLDYEETSIFHFTVQVHDMGTPRLFAEYA 1862
Query: 52 CSVIVHILDRNDNTPYFTQ 70
+V VH++D ND P F +
Sbjct: 1863 ANVTVHVIDINDCPPVFAK 1881
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNT-----PYFTQLNYT 74
G + + LD+E ++YNL+V A + ++ S ++ D P F+
Sbjct: 981 GAVRIVQQLDFEKKQVYNLTVRAKDKGKPVSLSSTCYVEVEVVDVNENLHPPVFSSFVEK 1040
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
G V E AP+G+LV+T + A D+D+ + ++ DGS
Sbjct: 1041 GTVKEDAPVGSLVMT-------VSAHDEDARRDGEIRYSIRDGS 1077
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
GV+ +PLD E ++L + A + A + + V V + D NDN P F NY
Sbjct: 875 GVVNIARPLDRELQHEHSLKIEARDQAREEPQLFSTVVVKVSLEDVNDNPPTFIPPNYRV 934
Query: 76 YVSEAAPIGALVL 88
V E P G +++
Sbjct: 935 KVREDLPEGTVIM 947
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
GV+ T LD E+T Y L+V AT+ + + + + D NDN P ++ Y +
Sbjct: 1089 GVIETSDRLDRESTSHYWLTVFATDQGVVPLSSFIEIYIEVEDVNDNAPQTSEPVYYPEI 1148
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E +P V+ I A D DS +N L
Sbjct: 1149 MENSPKDVSVVQ-------IEAFDPDSSSNDKL 1174
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSVIVHILDRNDNTP 66
A+HP GV++ LDY T++Y + + A + +G ++ + VHI N+ P
Sbjct: 196 AIHPTSGVIVLTGRLDYLETKLYEMEILAADRGMKLYGSSGISSMAKLTVHIEQANECAP 255
Query: 67 YFT 69
T
Sbjct: 256 VIT 258
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
+ P G + T K LD Y+L V AT+ + SV + + ++ +P FT
Sbjct: 1612 IDPVLGSIKTAKELDRSNQAEYDLMVKATDKGSPPMSEITSVRIFVTIADNASPKFTSKE 1671
Query: 73 YTGYVSEAAPIGALV 87
Y+ +SE IG+ V
Sbjct: 1672 YSVELSETVSIGSFV 1686
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 20 GVLLTKKPLDYEAT-RIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNY 73
G + T + LDYE R+Y L + A++ + + ++ ++ L NDNTP F ++N
Sbjct: 517 GAVSTSENLDYELMPRVYTLRIRASDWGLPYRREVEVLATITLNNL--NDNTPLFEKINC 574
Query: 74 TGYVSEAAPIGALVLTNTSL 93
G + +G + T +++
Sbjct: 575 EGTIPRDLGVGEQITTVSAI 594
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
GV+ TK+ L + V A + ++V V V IL P F++ YT V
Sbjct: 2653 GVITTKESLIGLENEFFTFFVRAVDNGSPSKESVVLVYVKILPPEMQLPKFSEPFYTFTV 2712
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGST 114
SE PIG T + L IRAE + +L+ G+T
Sbjct: 2713 SEDVPIG------TEIDL-IRAEHSGTVLYSLVKGNT 2742
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 16/95 (16%)
Query: 20 GVL-LTKKPLDYEATRIYNL--SVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
GVL T P D E +++ VT + A A V V + D+NDN P F L
Sbjct: 2030 GVLSTTGTPFDREQQEAFDVVVEVTEEHKPSAVAHVVVKVIVEDQNDNAPVFVNL----- 2084
Query: 77 VSEAAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
P A+V +T + VIR A D+DS N
Sbjct: 2085 -----PYYAVVKVDTEVGHVIRYVTAVDRDSGRNG 2114
>sp|Q8TDW7|FAT3_HUMAN Protocadherin Fat 3 OS=Homo sapiens GN=FAT3 PE=2 SV=2
Length = 4589
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 63/96 (65%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P GV+ T+K LDYE T Y L + ATNMAG + +V + I+D NDN P F Y+
Sbjct: 1716 INPYSGVITTQKALDYERTSSYQLIIQATNMAGMASNATVNIQIVDENDNAPVFLFSQYS 1775
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
G +SEAAPI ++V + + PLVIRA D DS NALL
Sbjct: 1776 GSLSEAAPINSIVRSLDNSPLVIRATDADSNRNALL 1811
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GVL PLDYE T Y L++ A++ + GA+A +V + + D NDN P F Q Y +S
Sbjct: 2238 GVLKVVSPLDYEVTSAYKLTIRASDALTGARAEVTVDLLVNDVNDNPPIFDQPTYNTTLS 2297
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
EA+ IG VL S+ D DSE N ++
Sbjct: 2298 EASLIGTPVLQVVSI-------DADSENNKMV 2322
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G ++ KPLD E IYN+SV T+ AV V + +LD NDN P F+Q NY +SE
Sbjct: 1413 GTIVIAKPLDAEQRSIYNMSVEVTDGTNV-AVTQVFIKVLDNNDNGPEFSQPNYDVTISE 1471
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSE 105
VL +T + L I A D+D +
Sbjct: 1472 D------VLPDTEI-LQIEATDRDEK 1490
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 9 AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
++ K + P GVL T + LD+EA I N+ V + + VIV++ D ND++P
Sbjct: 1505 SMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1564
Query: 67 YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
YFT Y V E+A +G+ VL T+L DKD NA L
Sbjct: 1565 YFTNPLYEASVFESAALGSAVLQVTAL-------DKDKGENAEL 1601
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G+++T +PL+ +Y L VT N G V + I D ND+TP F Q Y
Sbjct: 422 INPRSGLIVTARPLNTVKKEVYKLEVT--NKEG-DLKAQVTISIEDANDHTPEFQQPLYD 478
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
YV+E+ P+G VLT + A DKD N +
Sbjct: 479 AYVNESVPVGTSVLT-------VSASDKDKGENGYI 507
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
G++LT + LD+E + L V + + V+VHI D NDN P F QL Y YV
Sbjct: 2344 GLILTARMLDHELVQHCTLKVRSIDSGFPSLSSEVLVHIYISDVNDNPPVFNQLIYESYV 2403
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDS 104
SE AP G V ++A D DS
Sbjct: 2404 SELAPRGHFV-------TCVQASDADS 2423
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLN 72
+ P G++ KK LD E Y+L V A + + + +V + I D NDN+P FT N
Sbjct: 3391 VDPVLGLVKVKKKLDRERVSGYSLLVQAVDSGIPAMSSTATVNIDISDVNDNSPVFTPAN 3450
Query: 73 YTGYVSEAAPIGALVL 88
YT + E P+G +L
Sbjct: 3451 YTAVIQENKPVGTSIL 3466
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 12 KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFT 69
K ++P G + + LDYE + + L V A + AV +V +++ D NDN P F+
Sbjct: 3283 KFKINPKTGGISVSEVLDYELCKRFYLVVEAKDGGTPALSAVATVNINLTDVNDNPPKFS 3342
Query: 70 QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Q Y+ +SE A +G V +++ AED DS+ N +
Sbjct: 3343 QDVYSAVISEDALVGDSV-------ILLIAEDVDSQPNGQI 3376
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
G + T K LD+E + SV A+++ A ++ S V V + D NDN P F Q Y G
Sbjct: 2873 GWISTLKDLDHETDPTFTFSVVASDLGEAFSLSSTALVSVRVTDINDNAPVFAQEVYRGN 2932
Query: 77 VSEAAPIGALV 87
V E+ P G +V
Sbjct: 2933 VKESDPPGEVV 2943
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 25 KKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGYVSEAA 81
++PLD E YN+SV AT+ + +++ S V + +LD NDN P F + +Y V E
Sbjct: 3190 EQPLDREQQSSYNISVRATDQSPGQSLSSLTTVTITVLDINDNPPVFERRDYLVTVPEDT 3249
Query: 82 PIGALVLTNTSLPLVIRAEDKDSETNA 108
G V L + A KD TNA
Sbjct: 3250 SPGTQV-------LAVFATSKDIGTNA 3269
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 25 KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
K+PLD E IY L++TAT+ + +A+ V V + D NDN+P Q+ YT + E P
Sbjct: 2987 KRPLDREEQDIYFLNITATDGLFVTQAM--VEVSVSDVNDNSPVCDQVAYTALLPEDIPS 3044
Query: 84 GALVLTNTSLPLVIRAEDKDSETNALL 110
++L + A+D D +N +
Sbjct: 3045 NKIILK-------VSAKDADIGSNGYI 3064
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
G L P+D E T +Y L++T ++ + + +++ D NDN+P F Q +Y+ +
Sbjct: 781 GQLKVLMPMDREHTDLYLLNITIYDLGNPQKSSWRLLTINVEDANDNSPVFIQDSYSVNI 840
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E++ IG ++ + A DKD +N
Sbjct: 841 LESSGIGTEIIQ-------VEARDKDLGSNG 864
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 20 GVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
GV+ T + LD+E++ IY V A++ ++ +V + I + NDN+P F ++ G
Sbjct: 526 GVISTTEELDFESSPEIYRFIVRASDWGSPYRHESEVNVTIRIGNVNDNSPLFEKVACQG 585
Query: 76 YVSEAAPIGA 85
+S P+G
Sbjct: 586 VISYDFPVGG 595
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
G + K LDYE + YNL+V A + + + V V ++ N +TPYF
Sbjct: 990 GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1049
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAED--KDSETN-ALLDGS 113
G V E + IG VL T+ R ED +D E ++ DGS
Sbjct: 1050 GSVKENSRIGTSVLQVTA-----RDEDSGRDGEIQYSIRDGS 1086
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
L P G L T LD E +Y+L AT+ G C +H++ D NDN P F+ +
Sbjct: 3078 LDPESGELKTLALLDRERIPVYSLMAKATD--GGGRFCQSNIHLILEDVNDNPPVFSSDH 3135
Query: 73 YTGYVSEAAPIGALV 87
Y V E AL+
Sbjct: 3136 YNTCVYENTATKALL 3150
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLS--VTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G ++T + LD E ++S V A + G C+V V ++D NDN P F + Y V
Sbjct: 2550 GQVITTERLDRENPLEGDVSIFVRALDGGGRTTFCTVRVIVVDENDNAPQFMTVEYRASV 2609
Query: 78 SEAAPIGALV 87
G LV
Sbjct: 2610 RADVGRGHLV 2619
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 3 HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
+P FAI +K L + T + LD E + L VT T+ + ++ V+V +L
Sbjct: 1191 NPQNFFAINIKTGL-----ITTTSRKLDREQQAEHFLEVTVTDGGPSPKQSTIWVVVQVL 1245
Query: 60 DRNDNTPYFTQLNY 73
D NDN P F + Y
Sbjct: 1246 DENDNKPQFPEKVY 1259
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
G + K LD E + ++ V AT + V + +LD NDN P F +Y
Sbjct: 2763 GTIKLDKRLDRETSPAFHFKVAATIPLDKVDIVFTVDVDIKVLDLNDNKPVFETSSYDTI 2822
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E P+G + +RA D D N
Sbjct: 2823 IMEGMPVGTKLTQ-------VRAIDMDWGANG 2847
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFT 69
A++ G++ LD E+ Y+L + A + A + +V ++ V + D ND +P F
Sbjct: 878 AINSSTGIVYVADQLDRESKANYSLKIEARDKAESGQQLFSVVTLKVFLDDVNDCSPAFI 937
Query: 70 QLNYTGYVSEAAPIGALV 87
+Y+ V E P+G ++
Sbjct: 938 PSSYSVKVLEDLPVGTVI 955
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 8 FAILKPA----LHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILD 60
++IL P + GV+ T P D E +Y L V A+ A V V+I D
Sbjct: 2017 YSILNPGNKFKIKSTSGVIQTTGVPFDREEQELYELVVEASRELDHLRVARVVVRVNIED 2076
Query: 61 RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
NDN+P F L Y V A G L+ T++ DKD N
Sbjct: 2077 INDNSPVFVGLPYYAAVQVDAEPGTLIYQVTAI-------DKDKGPNG 2117
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 1 MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCS 53
+ V LF++ HP GV+ L+Y+ Y+L + A + G +
Sbjct: 197 FKNKVDLFSV-----HPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKLYGNNGVSSTAK 251
Query: 54 VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
+ VHI N++ P + + + E P A+V
Sbjct: 252 LYVHIERINEHAPTIHVVTHVPFSLEKEPTYAVV 285
>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1
Length = 4555
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 63/96 (65%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P GV+ T++ LDYE T Y L + ATNMAG + +V V ++D NDN P F Y+
Sbjct: 1715 INPYSGVITTRRALDYEHTSSYQLIIQATNMAGMASNATVSVQVVDENDNPPVFLFSQYS 1774
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
G +SEAAPI +LV + + PLVIRA D DS NALL
Sbjct: 1775 GSLSEAAPINSLVRSLDNSPLVIRATDADSNQNALL 1810
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 9/108 (8%)
Query: 5 VQLFAILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRN 62
+ ++ K + P GVL T + LD+EA I N+ V + + VIV++ D N
Sbjct: 1500 IDAISMRKFRIDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDAN 1559
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
D++PYFT Y V E+A +G++VL T+L DKD NA L
Sbjct: 1560 DHSPYFTNPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 1600
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G ++ KPLD E +YN+SV T+ AV V + +LD NDN P F+Q +Y +SE
Sbjct: 1412 GTIVIAKPLDAEQRSVYNMSVEVTDGTNV-AVTQVFITVLDNNDNGPEFSQPHYDVTISE 1470
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSE 105
P +L I A D+D +
Sbjct: 1471 DVPPDTEILQ-------IEATDRDEK 1489
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GVL PLDYE +Y L+V A++ + GA+A +V + + D NDN P F Q Y +S
Sbjct: 2237 GVLKVISPLDYEVMSVYKLTVRASDALTGARAEVTVDLLVDDVNDNPPVFDQPTYNTTLS 2296
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E++ IG VL + + D DS N L+
Sbjct: 2297 ESSLIGTPVLQ-------LVSTDADSGNNNLV 2321
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
G++LT + LD+E + L VTAT+ V+V I D NDN P F QL Y YV
Sbjct: 2343 GLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYISDVNDNPPVFNQLIYESYV 2402
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDS 104
SE AP G V ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
GV++ ++PLD E YN+SV AT+ + +++ S V + +LD NDN P F + +Y
Sbjct: 3184 GVIVLEQPLDREQQSSYNISVRATDQSPGQSLSSLTSVTITVLDINDNPPVFERRDYLVT 3243
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E +G VL+ + A KD TNA
Sbjct: 3244 VPEDTSLGTQVLS-------VFATSKDIGTNA 3268
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G+++T +PL+ +Y L V+ A V + I D ND+TP F + Y
Sbjct: 421 INPRSGLIVTAQPLNTVKKEVYKLEVSDKE---GDAKAQVTIGIEDANDHTPEFQETLYE 477
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+V+E+ P+G VLT + A DKD N +
Sbjct: 478 TFVNESVPVGTNVLT-------VSASDKDKGENGYI 506
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
A+ P G++ KK LD E Y+L + A + +G A+ S V + I D NDN+P FT
Sbjct: 3389 AVDPILGLVKVKKKLDRERVSGYSLLIQAVD-SGIPAMSSTTTVNIDISDVNDNSPVFTP 3447
Query: 71 LNYTGYVSEAAPIGALVL 88
NYT + E P+G +L
Sbjct: 3448 ANYTAVIQENKPVGTSIL 3465
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L P G L T LD E +YNL AT+ G +V++ + D NDN P F+ +YT
Sbjct: 3077 LDPESGELKTLALLDRERVPVYNLIARATDGGGRFCSSTVLLLLEDVNDNPPVFSSNHYT 3136
Query: 75 GYVSEAAPIGALV 87
V E AL+
Sbjct: 3137 ACVYENTATKALL 3149
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
G + T K LD+E ++ V A+++ A ++ S V V + D NDN P F Y G
Sbjct: 2872 GWISTLKDLDHETDPTFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 2931
Query: 77 VSEAAPIGALV 87
V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 12 KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
K ++P G + + LDYE + + L V A + G A+ +V + + D NDN P F
Sbjct: 3282 KFRINPKTGGISVLEALDYEMCKRFYLVVEAKD-GGTPALSTAATVSIDLTDVNDNPPRF 3340
Query: 69 TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+Q Y+ +SE A L S+ L+I AED DS+ N +
Sbjct: 3341 SQDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 3375
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
G L P+D E T +Y L++T ++ + + V++ D NDN+P F Q +Y+ +
Sbjct: 780 GQLKVLMPMDREHTDLYVLNITIYDLGKPQKSSWRLLTVNVEDANDNSPVFLQDSYSVSI 839
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E++ IG ++ + A DKD +N
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 25 KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
K+PLD E IY L++TA++ + +A+ V V D NDN+P Q+ Y+ + E P
Sbjct: 2986 KRPLDREEQDIYFLNITASDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYSASLPEDIPS 3043
Query: 84 GALVLTNTSLPLVIRAEDKDSETNA 108
++L + A+D D +N
Sbjct: 3044 NKIILK-------VSAKDADIGSNG 3061
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRND-----NTPYFTQLNYT 74
G + K LDYE + YNL+V A + ++ S+ ++ D +TPYF
Sbjct: 989 GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSISFVEVEVVDVNENLHTPYFPDFAVV 1048
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
G V E + IG VL + A D+DS + ++ DGS
Sbjct: 1049 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1085
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G ++T + LD E ++S+ A + G C+V V ++D NDN P F L Y V
Sbjct: 2549 GQIITTERLDRENPLEGDISIYLRALDGGGRTTFCTVRVIVVDENDNAPQFMTLEYRASV 2608
Query: 78 SEAAPIGALV 87
G LV
Sbjct: 2609 RADVGRGHLV 2618
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
G + K LD+E + ++ V AT + V V +LD NDN P F +Y
Sbjct: 2762 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSSYETI 2821
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E P+G + +RA D D N
Sbjct: 2822 IMEGMPVGTKLAQ-------VRAIDTDWGANG 2846
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 3 HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
+P FAI +K L + T + LD E + L VT T+ + ++ V+V +L
Sbjct: 1190 NPQNFFAINIKTGL-----ITTTSRKLDREQQAEHFLEVTVTDGGSSPKQSTIWVVVQVL 1244
Query: 60 DRNDNTPYFTQLNY 73
D NDN P F + Y
Sbjct: 1245 DENDNKPQFPEKVY 1258
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 1 MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
+++ + +L A++ GV+ T + LD+E++ Y V A++ ++ +V +
Sbjct: 506 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPETYRFIVRASDWGSPYRHESEVNVTI 565
Query: 57 HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
+ + NDN+P F ++ G +S P+G
Sbjct: 566 RVGNVNDNSPLFEKVACQGVISYDFPVGG 594
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI-LDRNDNT-PYFTQLN 72
+ P G++ K D A + LSV T+ + IV I + +DN+ P FT +
Sbjct: 1615 IEPVLGIITISKEPDMTAMGQFVLSVKVTDQGSPPMSATAIVRISISMSDNSHPKFTHKD 1674
Query: 73 YTGYVSEAAPIGALVL 88
Y V+E IG V+
Sbjct: 1675 YQAEVNENVDIGTSVI 1690
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 8 FAILKPA----LHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILD 60
++IL P + GV+ T P D E +Y L V A+ A V V+I D
Sbjct: 2016 YSILNPGNKFKIKSTSGVIQTTGVPFDREEQELYELVVEASRELDHLRVARVVVRVNIED 2075
Query: 61 RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
NDN+P F L Y V A G L+ T++ DKD N
Sbjct: 2076 VNDNSPVFVGLPYYAAVQVDAEPGTLIYRVTAI-------DKDKGANG 2116
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
G++ LD E+ Y+L + A + A + +V ++ + + D ND +P F +Y+
Sbjct: 883 GIVYIADQLDRESKANYSLKIEARDKAESGQQLFSVVTLKIFLDDVNDCSPAFIPSSYSV 942
Query: 76 YVSEAAPIGALV 87
V E P+G ++
Sbjct: 943 KVLEDLPVGTVI 954
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 1 MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCS 53
+ V LF++ HP GV+ L+Y+ Y+L + A + G +
Sbjct: 196 FKNKVDLFSV-----HPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKLYGNNGVSSTAK 250
Query: 54 VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
+ VHI N++ P + +T + + P A+V
Sbjct: 251 LYVHIERINEHAPIIHVVTHTPFSLDKEPTYAVV 284
>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2
Length = 4555
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 63/96 (65%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P GV+ T++ LDYE T Y L + ATNMAG + ++ V I+D NDN P F Y+
Sbjct: 1715 INPYSGVITTRRALDYEHTSSYQLIIQATNMAGMASNATISVQIVDENDNPPVFLFSQYS 1774
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
G +SEAAPI ++V + + PLVIRA D DS NALL
Sbjct: 1775 GSLSEAAPINSIVRSLDNSPLVIRATDADSNQNALL 1810
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 9 AILKPALHPPYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
++ K + P GVL T + LD+EA I N+ V + + VIV++ D ND++P
Sbjct: 1504 SMRKFRMDPSTGVLYTAERLDHEAQDKHILNIMVRDQEFPYRRNLARVIVNVEDANDHSP 1563
Query: 67 YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
YFT Y V E+A +G++VL T+L DKD NA L
Sbjct: 1564 YFTNPLYEASVFESAALGSVVLQVTAL-------DKDKGENAEL 1600
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GVL PLDYE T +Y L+V A++ + GA+A +V + + D NDN P F Q Y +S
Sbjct: 2237 GVLKVISPLDYEVTSVYKLTVRASDALTGARAEVTVDLLVDDINDNPPVFDQPTYNTTLS 2296
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E++ IG VL + + D DS N L+
Sbjct: 2297 ESSLIGTPVLQ-------LVSTDADSGNNKLV 2321
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G ++ KPLD E +YN+SV T+ AV V + +LD NDN P F+Q +Y +SE
Sbjct: 1412 GTIVIAKPLDAEQRSVYNMSVEVTDGTNI-AVTQVFIKVLDNNDNGPEFSQPHYDVTISE 1470
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSE 105
VL +T + L I A D+D +
Sbjct: 1471 D------VLPDTEI-LQIEATDRDEK 1489
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
G++LT + LD+E + L VTAT+ V+V I D NDN P F QL Y YV
Sbjct: 2343 GLILTARMLDHELVQHCTLKVTATDNGFPSLSSEVLVQIYISDVNDNPPVFNQLIYESYV 2402
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDS 104
SE AP G V ++A D DS
Sbjct: 2403 SELAPRGHFV-------TCVQASDADS 2422
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
GV++ ++PLD E YN+SV AT+ + +++ SV + +LD NDN P F + +Y
Sbjct: 3184 GVIVLEQPLDREQQSSYNISVRATDQSPGQSLSSLASVTITVLDINDNPPVFERRDYLVT 3243
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E +G VL+ + A KD TNA
Sbjct: 3244 VPEDTSLGTQVLS-------VFATSKDIGTNA 3268
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQ 70
A+ P G++ KK LD E Y+L + A + +G A+ S V + I D NDN+P FT
Sbjct: 3389 AVDPILGLVKVKKKLDRERVSGYSLLIQAVD-SGIPAMSSTTTVNIDISDVNDNSPVFTP 3447
Query: 71 LNYTGYVSEAAPIGALVL 88
NYT + E P+G +L
Sbjct: 3448 ANYTAVIQENKPVGTSIL 3465
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G+++T +PL+ +Y L V+ A V + I D ND+TP F + Y
Sbjct: 421 INPRSGLIVTAQPLNTVKKEVYKLEVSDKE---GDAKAQVTIGIEDANDHTPEFQEALYE 477
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+V+E+ +G VLT + A DKD N +
Sbjct: 478 TFVNESVRVGTNVLT-------VSASDKDKGENGYI 506
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L P G L T LD E +YNL AT+ G SV++ + D NDN P F+ +YT
Sbjct: 3077 LDPESGELKTLAVLDRERVPVYNLIARATDGGGRFCSSSVLLLLEDVNDNPPVFSSNHYT 3136
Query: 75 GYVSEAAPIGALV 87
V E AL+
Sbjct: 3137 ACVYENTATKALL 3149
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 12 KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYF 68
K +++P G + + LDYE R + L V A + G A+ +V + + D NDN P F
Sbjct: 3282 KFSINPKTGGISVLEALDYETCRRFYLVVEAKD-GGTPALSTAATVSIDLTDVNDNPPRF 3340
Query: 69 TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+Q Y+ +SE A L S+ L+I AED DS+ N +
Sbjct: 3341 SQDVYSAVISEDA------LEGDSVILLI-AEDVDSKPNGQI 3375
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
G + T K LD+E ++ V A+++ A ++ S V V + D NDN P F Y G
Sbjct: 2872 GWISTLKDLDHETDPAFSFFVVASDLGEAFSLSSMALVSVKVTDINDNAPVFAHEVYRGN 2931
Query: 77 VSEAAPIGALV 87
V E+ P G +V
Sbjct: 2932 VKESDPPGEVV 2942
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
G L P+D E T +Y L++T ++ + + V++ D NDN P F Q +Y+ +
Sbjct: 780 GQLKVLMPMDREHTDLYVLNITIYDLGKPQKSSWRLLTVNVEDANDNNPVFLQDSYSVSI 839
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E++ IG ++ + A DKD +N
Sbjct: 840 LESSSIGTEIIQ-------VEARDKDLGSNG 863
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 25 KKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
K+PLD E IY L++TA++ + +A+ V V D NDN+P Q+ Y+ + E P
Sbjct: 2986 KRPLDREEQDIYFLNITASDGLFVTQAMVEVTVS--DVNDNSPVCDQVAYSASLPEDIPS 3043
Query: 84 GALVLTNTSLPLVIRAEDKDSETNA 108
++L + A+D D +N
Sbjct: 3044 NKIILK-------VSAKDADIGSNG 3061
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSV--TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G ++T + LD E ++S+ A + G C+V V ++D NDN P F + Y V
Sbjct: 2549 GQIITTERLDRENPLEGDISIYLRALDGGGRTTFCTVRVIVVDENDNAPQFMTVEYRASV 2608
Query: 78 SEAAPIGALV 87
G LV
Sbjct: 2609 RADVGRGHLV 2618
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTAT---NMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
G + K LD+E + ++ V AT + V V +LD NDN P F Y
Sbjct: 2762 GAIKLDKRLDHEVSPAFHFKVAATIPLDKVDIVFTVDVDVKVLDLNDNKPVFETSTYETI 2821
Query: 77 VSEAAPIG 84
+ E P+G
Sbjct: 2822 IMEGMPVG 2829
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 3 HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
+P FAI +K L + T + LD E + L VT T+ + ++ V+V +L
Sbjct: 1190 NPQNFFAINIKTGL-----ITTTSRKLDREQQAEHFLEVTVTDGGSSPKQSTIWVVVQVL 1244
Query: 60 DRNDNTPYFTQLNY 73
D NDN P F + Y
Sbjct: 1245 DENDNRPQFPEKVY 1258
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
G + K LDYE + YNL+V A + + + V V ++ N +TPYF
Sbjct: 989 GAIRLSKELDYEKQQFYNLTVRAKDKGRPVSLSSVSFVEVEVVDVNENLHTPYFPDFAVV 1048
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN-----ALLDGS 113
G V E + IG VL + A D+DS + ++ DGS
Sbjct: 1049 GSVKENSRIGTSVLQ-------VTAHDEDSGRDGEIQYSIRDGS 1085
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 1 MSHPVQLFAILKPALHPPYGVLLTKKPLDYEAT-RIYNLSVTATNMAGA---KAVCSVIV 56
+++ + +L A++ GV+ T + LD+E++ Y V A++ ++ +V +
Sbjct: 506 ITYSIASLNLLPFAINQFTGVISTTEELDFESSPETYRFIVRASDWGSPYRHESEVNVTI 565
Query: 57 HILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
+ + NDN+P F ++ G +S P+G
Sbjct: 566 RVGNVNDNSPLFEKVACQGVISYDFPVGG 594
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI-LDRNDNT-PYFTQLN 72
+ P G++ K D A + LSV T+ + IV I + +DN+ P FT +
Sbjct: 1615 IEPVLGIITISKEPDMAAMGQFVLSVKVTDQGSPPMSATAIVRISISMSDNSHPKFTHKD 1674
Query: 73 YTGYVSEAAPIGALVL 88
Y V+E IG V+
Sbjct: 1675 YQAEVNENVDIGTSVI 1690
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 8 FAILKPA----LHPPYGVLLTKK-PLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILD 60
++IL P + GV+ T P D E +Y L V A+ A V V+I D
Sbjct: 2016 YSILNPGNKFKIKSTSGVIQTTGVPFDREEQELYELVVEASRELDHLRVARVVVRVNIED 2075
Query: 61 RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
NDN+P F L Y V A G L+ T++ DKD N
Sbjct: 2076 VNDNSPVFVGLPYYAAVQVDAEPGTLIYRVTAI-------DKDKGANG 2116
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTG 75
G++ LD E+ Y+L + A + A + +V ++ + + D ND +P F +Y+
Sbjct: 883 GIVYIADQLDRESKANYSLKIEARDKAESGQQLFSVVTLKIFLDDVNDCSPAFIPSSYSV 942
Query: 76 YVSEAAPIGALV 87
V E P+G ++
Sbjct: 943 KVLEDLPVGTVI 954
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 16/105 (15%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIVHILDRNDNTPYFTQLNYTG 75
G + T LD+EA ++ V + A++ V + + D NDN P FTQ +
Sbjct: 1830 GAIRTIANLDHEAIAHFHFHVHVRDSGNPQLTAESPVEVNIEVTDVNDNPPVFTQAVFET 1889
Query: 76 YVSEAAPIGALVLTNTSLPLVIRAEDKDSE-----TNALLDGSTN 115
+ IG VL + A D DSE T +L++GS +
Sbjct: 1890 VLLLPTYIGVEVLK-------VSATDPDSEVPPELTYSLMEGSVD 1927
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 1 MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA-------GAKAVCS 53
+ V LF++ HP GV+ L+Y+ Y+L + A + G +
Sbjct: 196 FKNKVDLFSV-----HPTSGVISLSGRLNYDEKNRYDLEILAVDRGMKLYGNNGVSSTAK 250
Query: 54 VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
+ VHI N++ P +++T + + P A+V
Sbjct: 251 LYVHIERINEHAPIIHVVSHTPFSLDKEPTYAVV 284
>sp|Q5F226|FAT2_MOUSE Protocadherin Fat 2 OS=Mus musculus GN=Fat2 PE=2 SV=1
Length = 4351
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ T+K LD+E Y L + +NMAG +V+I+D NDN P F + + G++SE
Sbjct: 1710 GLISTQKRLDHEKVSSYQLKIRGSNMAGVFTEVVALVYIIDENDNAPAFLKSTFVGHISE 1769
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
AAP+ +L+L + PLVIRA D D E N+LL
Sbjct: 1770 AAPLHSLILGEDNSPLVIRASDSDQEANSLL 1800
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
+ P G L K LD+E T Y+L + AT+ V V ++D NDN P F QLN
Sbjct: 3373 IDPKKGKLQVAKALDWEQTPSYSLRIRATDSGQPPLHEDTEVAVEVVDVNDNPPRFFQLN 3432
Query: 73 YTGYVSEAAPIGALVL 88
Y+ V E +PIG VL
Sbjct: 3433 YSTAVQENSPIGIKVL 3448
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 17 PPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFTQL 71
P G L +K LD+E YNLS A++ + +C V V ++D N+N +P+F+
Sbjct: 976 PMTGALSLEKELDFERRAGYNLSFWASDSGRPLARRTLCHVEVLVMDVNENLHSPHFSSF 1035
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Y G V E +P G V +V+ A+D DS + L
Sbjct: 1036 VYQGQVQENSPAGTQV-------MVVTAQDDDSGLDGEL 1067
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GVL PLDYE+ + +V AT+ A G+ + +V V + D NDN P F+QL Y+ VS
Sbjct: 2223 GVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYSTSVS 2282
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
E +P V+ + A D+DS N
Sbjct: 2283 EGSPAQTPVIQ-------LLASDQDSGQN 2304
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
+ ++K LD E Y L +TA++ +A V V +LD NDN+P +QL YTG V E
Sbjct: 2968 ITSRKTLDREHIAKYLLRITASD-GKFQASVPVEVFVLDINDNSPQCSQLLYTGKVREDV 3026
Query: 82 PIGALVLTNTSLPLVIRAEDKDSETNALL 110
G +L + A D D +TNA +
Sbjct: 3027 TPGHFILK-------VSAIDVDMDTNAQI 3048
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
G + T + LDYEA + + + V AT+ V+V++ D NDN P F + Y V
Sbjct: 2329 GEMFTIQELDYEAHQHFRVKVRATDRGDPPLTGETLVVVNVSDINDNPPEFREPQYEANV 2388
Query: 78 SEAAPIGALVLTNTSL 93
SE A G LVL +L
Sbjct: 2389 SELATCGHLVLKVQAL 2404
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ T KP+D+ Y L V + +A +VI+ I+D N++ P F + +Y G + E
Sbjct: 413 GLITTTKPVDFHEQNQYQLHVKTSL---GQATTTVIIDIVDCNNHAPVFNRSSYEGTLDE 469
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
P G VLT + A D+D N
Sbjct: 470 NIPPGTSVLT-------VTATDQDHGDNG 491
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 14 ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
++ P GV+ T K +DYE RIY V A++ + SV + + + NDN P F
Sbjct: 506 SIDPYLGVISTTKSMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNQPMFE 565
Query: 70 QLNYTGYVSEAAPIGALVLTNTSLPL 95
++N T + + AP+G ++ +++ +
Sbjct: 566 EVNCTVSLRQDAPVGKSIMAVSAIDM 591
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 7 LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIV 56
++ IL+P + P G L LDYE T ++ S+ T + A VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTITSELDYETTPLFQFSIYVHDQGTPILFAPRSARVII 1860
Query: 57 HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSE 105
H+ D ND+ P F++ Y V E G +LT ++AED DS+
Sbjct: 1861 HVRDVNDSPPRFSEQIYEVAVVEPIHPGMELLT-------VQAEDNDSK 1902
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L P G L T LD E +YNL AT+ G V +HI D NDN P F
Sbjct: 3062 LDPHTGELTTLSVLDRERKDVYNLVAKATDGGGQSCQAEVTLHIEDVNDNAPRF------ 3115
Query: 75 GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
+ S A V NT++ V+ A D D NA
Sbjct: 3116 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGVNA 3148
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
GVL KK +D+E+T+ Y + + A T++ ++ SV + + D NDN P F Y
Sbjct: 2748 GVLKVKKAMDHESTKWYQIDLMAHCPHEDTDLV---SLVSVNIQVEDVNDNRPVFEADPY 2804
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+++E P G V+ + A D+D+ ++
Sbjct: 2805 KAFLTENMPGGTTVIQ-------VTANDQDTGSDG 2832
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G+L T PLD E T Y L+V A + AV V + + D NDN P ++ + V
Sbjct: 1087 GMLETLAPLDREFTPYYWLTVLAVDRGSVPLSAVTEVYIEVTDINDNIPSMSRPVFYPSV 1146
Query: 78 SEAAPIGALVL 88
E AP+G VL
Sbjct: 1147 KEDAPLGTSVL 1157
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
QLFA+ + G + T + LD E + Y V A + + S V V I D N
Sbjct: 2848 QLFAVDSES-----GWITTLQELDCETQQTYRFYVVAFDHGQTIQLSSQALVEVSITDEN 2902
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
DN P F +Y G V E G LV T +L I +++
Sbjct: 2903 DNPPRFASEDYRGSVVENNEPGELVATLKTLDADISEQNR 2942
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
+HP G+L T K LD E Y L VT + ++ V+V +LD NDN+P F+
Sbjct: 1187 VHPFTGLLSTAKQLDRENKDEYVLEVTVQDNGDPPLRSTSRVVVCVLDVNDNSPMFSHKL 1246
Query: 73 YTGYVSE 79
+ +SE
Sbjct: 1247 FNVRLSE 1253
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 18 PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
P G + T + LD E + R+ + + A + G A C+V + + D NDN P F YT
Sbjct: 2533 PSGQITTLQKLDRENSTERVIAIKIMARDGGGKVAFCTVKIILTDENDNAPQFKASGYTV 2592
Query: 75 ---GYVSEAAPI 83
VS +PI
Sbjct: 2593 SIPSNVSRDSPI 2604
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
G+L LD+E Y LS+ + + + V ++++++ D N++ P FT YT V
Sbjct: 3273 GILYVNGSLDFETNPKYFLSIECSRKSSSSLSDVTTIVINVTDVNEHHPRFTHDLYTVRV 3332
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E A +G ++LT + A D D N+++
Sbjct: 3333 LENAIVGDVILT-------VSASDDDGPVNSVI 3358
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+ P G + KKP DY+A Y+L VTA + V VH+ RN + P F Y
Sbjct: 2118 IDPYVGDISLKKPFDYQALNKYHLRVTARDAGTPPLQTEVEVHVTVRNKSNPLFQSPYYK 2177
Query: 75 GYVSE 79
V E
Sbjct: 2178 VKVPE 2182
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 28 LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
L+ E Y L V A++ + +A+ V+VHILD+ND P F+ +Y +SE P+
Sbjct: 107 LNREVRDSYTLVVQASDKSLEFEALTQVVVHILDQNDLKPLFSPPSYRFTISEDRPL 163
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
G+L LDYE T Y L+VT ++ K+ ++ V + D ND P F Y +
Sbjct: 770 GLLTVAAALDYETTSFYVLNVTVYDLGTPPKSSWKLLTVTVKDWNDKPPRFPPGGYQLTI 829
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
SE +G V ++ D DSE N
Sbjct: 830 SEDTEVGTTVAE-------LKTRDTDSEDNG 853
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 15 LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
L P GVL+T LD + I + V M + V +H+ D N ++P+FTQ
Sbjct: 1499 LDPSSGVLVTVGTLDLHSGPSQHILTVMVRDQEMPIKRNFVWVTIHVEDGNLHSPHFTQP 1558
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
Y V + G +L +RA D D NA
Sbjct: 1559 RYEANVPDTTTPGTELLQ-------VRAVDADRGANA 1588
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 12 KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNM--AGAK--AVCSVIVHILDRNDNTPY 67
K +LHP G L+ LD E+ Y L A + G + +V VIV + D NDN P
Sbjct: 865 KFSLHPLTGELVVTGQLDRESEPQYILKAEARDQPTKGHQLFSVTDVIVTLEDINDNPPQ 924
Query: 68 FTQLNYTGYVSEAAPIGALV 87
+ + V E P+G ++
Sbjct: 925 CITEHSSLKVPEDMPLGTVL 944
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
G++ + LD+ + L+V A + + + V+VH+ + + P F++ Y +
Sbjct: 1610 GIITVAQRLDHVHLNRHALTVKAEDQGSPQRHDLAMVVVHVHPSDSSAPIFSKDEYFIEI 1669
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
E+ PIG+ + L+I A T L +G+ N
Sbjct: 1670 PESVPIGSPI-------LLISAASSSDVTYELREGNKN 1700
>sp|O88277|FAT2_RAT Protocadherin Fat 2 OS=Rattus norvegicus GN=Fat2 PE=1 SV=1
Length = 4351
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ T+K LD+E Y L + +NMAG +V+I+D NDN P F + + G++SE
Sbjct: 1710 GLISTQKRLDHEKVPSYRLRIRGSNMAGVFTEVVALVYIIDENDNPPAFGKPTFLGHISE 1769
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
AAP+ +L+L + PLV+RA D D E N+LL
Sbjct: 1770 AAPLHSLILGEDNSPLVVRASDSDREANSLL 1800
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDN--TPYFT 69
+HP G L +K LD+E YNLS A++ + +C V V ++D N+N +P+F+
Sbjct: 974 VHPMTGALSLEKELDFERRAGYNLSFWASDSGKPLSRRTLCHVEVLVMDVNENLHSPHFS 1033
Query: 70 QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Y G V E +P G V +V+ A+D DS + L
Sbjct: 1034 SFVYQGQVQENSPAGTPV-------MVVTAQDDDSGLDGEL 1067
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
++P G L K LD+E T Y+L + AT+ V V ++D NDN P F QLN
Sbjct: 3373 INPKKGKLQVAKALDWEQTPSYSLRLRATDSGQPPLHEDTEVAVEVVDVNDNPPRFFQLN 3432
Query: 73 YTGYVSEAAPIGALVL 88
Y+ V E +PIG VL
Sbjct: 3433 YSTSVQENSPIGIKVL 3448
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GVL PLDYE+ + +V AT+ A G+ + +V V + D NDN P F+QL YT VS
Sbjct: 2223 GVLTVTGPLDYESKNKHVFTVRATDTALGSFSEATVEVLVEDINDNPPTFSQLVYTTSVS 2282
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
E +P V+ + A D+DS N
Sbjct: 2283 EGSPAQTPVIQ-------LLASDQDSGQN 2304
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 14 ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
++ P GV+ T KP+DYE RIY V A++ + SV + + + NDN P F
Sbjct: 506 SIDPLLGVISTTKPMDYELMKRIYTFRVRASDWGSPFRQEKEVSVSLRLKNLNDNQPMFE 565
Query: 70 QLNYTGYVSEAAPIGALVLTNTSLPL 95
++N T + + P+G ++ +++ +
Sbjct: 566 EVNCTVSLRQDVPVGKSIMAVSAIDM 591
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 24 TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
++K LD E Y L VTA++ +A V V ++D NDN+P +QL YTG V E
Sbjct: 2970 SRKTLDREHIAKYLLRVTASD-GKFQASVPVEVFVVDINDNSPQCSQLLYTGKVREDVTP 3028
Query: 84 GALVLTNTSLPLVIRAEDKDSETNALL 110
G +L + A D D +TNA +
Sbjct: 3029 GHFILK-------VSAIDVDMDTNAQI 3048
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 7 LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSV----TATNMAGAKAVCSVIV 56
++ IL+P + P G L T LD+E T ++ ++ T + A VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTTTSELDFEDTPLFQFNIYVHDQGTPILFAPRSAKVII 1860
Query: 57 HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
H+ D ND+ P F++ Y V E G +LT ++AED DS
Sbjct: 1861 HVRDVNDSPPRFSEQIYEVAVVEPIHPGMGLLT-------VQAEDNDS 1901
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
L P G L T LD E +YNL AT+ G V +HI D NDN P F
Sbjct: 3062 LDPHTGELTTLTVLDRERKDVYNLVAKATDGGGQSCQAEVTLHIEDVNDNAPRF 3115
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTA------TNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
GVL +K +D+E+T+ Y + + A T++ ++ SV + + D NDN P F Y
Sbjct: 2748 GVLKVRKAMDHESTKWYQIDLMAHCPHEDTDLV---SLVSVSIQVEDVNDNRPVFEADPY 2804
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+++E P G V+ + A D+D+ ++
Sbjct: 2805 KAFLTENMPGGTTVIQ-------VTANDQDTGSDG 2832
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G+L T PLD E T Y L+V A + AV V + + D NDN P ++ + V
Sbjct: 1087 GMLETLAPLDREFTPYYWLTVLAVDRGSVPLSAVTEVYIEVTDINDNIPSMSRPVFYPSV 1146
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E AP+G VL + A D DS + L
Sbjct: 1147 LEDAPLGTSVLQ-------LEAWDPDSSSQGKL 1172
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
G + T + LDYE + + + V A + V+V++ D NDN P F + Y V
Sbjct: 2329 GEIFTIQELDYETHQHFRVKVRAMDKGDPPLTGETLVVVNVSDINDNPPKFREPQYEANV 2388
Query: 78 SEAAPIGALVLTNTSL 93
SE A G LVL +L
Sbjct: 2389 SELATCGHLVLKVQAL 2404
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTGYV 77
G+L+ LDYE T Y L+VT ++ K+ ++ V + D NDN P F Y +
Sbjct: 770 GLLMVAAALDYETTSFYVLNVTVYDLGTPPKSSWKLLTVTVKDWNDNPPRFPPGGYQLTI 829
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
SE +G + ++ ED DSE N
Sbjct: 830 SEDTEVGTTIAE-------LKTEDADSEDN 852
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ T K +D+ Y L V + +A +VI+ I+D N++ P F + +Y G + E
Sbjct: 413 GLITTTKLVDFHEQNQYQLHV---KTSLGQATTTVIIDIVDCNNHAPVFNRSSYEGTLDE 469
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
P G VLT + A D+D N
Sbjct: 470 NIPPGTSVLT-------VTATDQDHGDNG 491
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 18 PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
P G + T + LD E + R+ + V A + G A C+V + + D NDN P F YT
Sbjct: 2533 PRGQITTLQKLDRENSTERVIAIKVMARDGGGKVAFCTVKIILTDENDNAPQFKASGYTV 2592
Query: 75 ---GYVSEAAPI 83
VS +PI
Sbjct: 2593 SIPSNVSRDSPI 2604
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLN 72
+HP G+L T K LD E Y L VT + ++ V+V ILD NDN P F+
Sbjct: 1187 VHPFTGLLTTAKQLDRENKDEYVLEVTVQDNGDPSLRSTSRVVVCILDVNDNPPMFSHKL 1246
Query: 73 YTGYVSE 79
+ +SE
Sbjct: 1247 FNVRLSE 1253
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
+LFA+ + G + T + LD E + Y V A + + S V V I D N
Sbjct: 2848 ELFAVDSES-----GWITTLQELDCETQQTYRFYVVAFDHGQTIQLSSQALVEVSITDEN 2902
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
DN P F +Y G V E G LV T +L
Sbjct: 2903 DNPPRFASEDYRGSVVENNEPGELVATLKTL 2933
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
G+L LD+E Y LS+ + + + V ++++++ D N++ P FT YT V
Sbjct: 3273 GILYVNGSLDFETNPKYFLSIECSRKSSSSLSDVTTIVINVTDVNEHHPRFTHDLYTVRV 3332
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E A +G ++LT + A D D N+ +
Sbjct: 3333 LENAVVGDVILT-------VSASDDDGPVNSAI 3358
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 15 LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
L P GVL+T L+ + I + V M + V +H+ D N ++P+FTQL
Sbjct: 1499 LDPSSGVLVTVGTLELHSGPSQHILTVMVRDQEMPIKRNFVWVTIHVEDGNLHSPHFTQL 1558
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
Y V + G +L +RA D D NA
Sbjct: 1559 RYEANVPDTTAPGTELLQ-------VRAVDADRGANA 1588
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 28 LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
L+ E Y L V A++ + +A+ V+VHILD+ND P F+ +Y +SE P+
Sbjct: 107 LNREVRDSYTLIVQASDKSLEFEALTQVVVHILDQNDLKPLFSPPSYRVTISEDRPL 163
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+ P G + KKP DY+A Y+L V A + V VH+ RN + P F Y
Sbjct: 2118 IDPYVGDISLKKPFDYQALNKYHLRVIARDSGIPPLQTEVEVHVTVRNKSNPLFQSPYYK 2177
Query: 75 GYVSE 79
V E
Sbjct: 2178 VKVPE 2182
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
GV+ +KPL A+ L+V A+++ + +V V ++ D P F ++
Sbjct: 3169 GVIRLEKPLQVRASSAVELTVRASDLGTPIPLSTLGTVTVSVVGLEDYLPIFLNAEHSTQ 3228
Query: 77 VSEAAPIGALVL 88
V E API VL
Sbjct: 3229 VPEDAPIDMEVL 3240
>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2 PE=1 SV=2
Length = 4349
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ T+K LD+E Y L + +NMAGA V+V I+D NDN P F + + G +SE
Sbjct: 1710 GLISTQKKLDHEKISSYQLKIRGSNMAGAFTDVMVVVDIIDENDNAPMFLKSTFVGQISE 1769
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
AAP+ ++++ + P VI A D D E N+LL
Sbjct: 1770 AAPLYSMIMDKNNNPFVIHASDSDKEANSLL 1800
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 14 ALHPPYGVLLTKKPLDYE-ATRIYNLSVTATNMAG---AKAVCSVIVHILDRNDNTPYFT 69
++ P G++ T KP+DYE RIY V A++ + S+ + + + NDN P F
Sbjct: 506 SIDPYLGIISTSKPMDYELMKRIYTFRVRASDWGSPFRREKEVSIFLQLRNLNDNQPMFE 565
Query: 70 QLNYTGYVSEAAPIGALVLTNTSL 93
++N TG + + P+G ++T +++
Sbjct: 566 EVNCTGSIRQDWPVGKSIMTMSAI 589
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQL 71
+L P GV+ +KP+D+E+T++Y + V A + V SV + + D NDN P F
Sbjct: 2741 SLDPDTGVIKVRKPMDHESTKLYQIDVMAHCLQNTDVVSLVSVNIQVGDVNDNRPVFEAD 2800
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
Y ++E P+G V+ T++ DKD+
Sbjct: 2801 PYKAVLTENMPVGTSVIQVTAI-------DKDT 2826
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLN 72
+HP G L K LD E Y+L + AT+ + + + D NDN P F QLN
Sbjct: 3371 IHPKKGELQVAKALDREQASSYSLKLRATDSGQPPLHEDTDIAIQVADVNDNPPRFFQLN 3430
Query: 73 YTGYVSEAAPIGALVL 88
Y+ V E +PIG+ VL
Sbjct: 3431 YSTTVQENSPIGSKVL 3446
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GVL PLDYE+ + +V AT+ A G+ + +V V + D NDN P F+QL YT +S
Sbjct: 2223 GVLTVTGPLDYESKTKHVFTVRATDTALGSFSEATVEVLVEDVNDNPPTFSQLVYTTSIS 2282
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETN 107
E P V+ + A D+DS N
Sbjct: 2283 EGLPAQTPVIQ-------LLASDQDSGRN 2304
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 24 TKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
++K LD E T Y L VTA++ +A +V + +LD NDN+P +QL YTG V E
Sbjct: 2968 SRKTLDREHTAKYLLRVTASD-GKFQASVTVEIFVLDVNDNSPQCSQLLYTGKVHEDVFP 3026
Query: 84 GALVLTNTSLPLVIRAEDKDSETNALL 110
G +L + A D D++TNA +
Sbjct: 3027 GHFILK-------VSATDLDTDTNAQI 3046
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNT--PYFTQLNYT 74
G L+ ++ LD+E YNLS+ A++ + +C V V +LD N+N P+F +
Sbjct: 979 GALILERELDFERRAGYNLSLWASDGGRPLARRTLCHVEVIVLDVNENLHPPHFASFVHQ 1038
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
G V E +P G V +V+ A+D DS + L
Sbjct: 1039 GQVQENSPSGTQV-------IVVAAQDDDSGLDGEL 1067
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
G + T + LDYEA + +++ V A + V+V++ D NDN P F Q Y V
Sbjct: 2329 GEMSTVQELDYEAQQHFHVKVRAMDKGDPPLTGETLVVVNVSDINDNPPEFRQPQYEANV 2388
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
SE A G LVL ++A D DS + L+
Sbjct: 2389 SELATCGHLVLK-------VQAIDPDSRDTSRLE 2415
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYV 77
G+L PLDYEAT Y L+VT ++ + + V++ D NDN P F Y +
Sbjct: 770 GLLTVAAPLDYEATNFYILNVTVYDLGTPQKSSWKLLTVNVKDWNDNAPRFPPGGYQLTI 829
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
SE +G + T+ +D DSE N
Sbjct: 830 SEDTEVGTTIAELTT-------KDADSEDNG 853
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G++ T PLD E Y L+V A + +V V + + D NDN P +Q + +
Sbjct: 1087 GMIQTLAPLDREFASYYWLTVLAVDRGSVPLSSVTEVYIEVTDANDNPPQMSQAVFYPSI 1146
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E AP+G VL + A D DS + L
Sbjct: 1147 QEDAPVGTSVLQ-------LDAWDPDSSSKGKL 1172
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRN 62
+LFAI + G + T + LD E + Y+ V A + + S V V I D N
Sbjct: 2846 ELFAIDSES-----GWITTLQELDCETCQTYHFHVVAYDHGQTIQLSSQALVQVSITDEN 2900
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDK 102
DN P F Y G V E + G LV T +L I +++
Sbjct: 2901 DNAPRFASEEYRGSVVENSEPGELVATLKTLDADISEQNR 2940
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L P G L T LD E ++NL AT+ G + +H+ D NDN P F
Sbjct: 3060 LDPHTGELTTLTALDRERKDVFNLVAKATDGGGRSCQADITLHVEDVNDNAPRF------ 3113
Query: 75 GYVSEAAPIGALVLTNTSLPL---VIRAEDKDSETNA 108
+ S A V NT++ V+ A D D NA
Sbjct: 3114 -FPSHCA---VAVFDNTTVKTPVAVVFARDPDQGANA 3146
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 7 LFAILKPA------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG----AKAVCSVIV 56
++ IL+P + P G L +DYE+ + V + A VI+
Sbjct: 1801 VYKILEPEALKFFKIDPSMGTLTIVSEMDYESMPSFQFCVYVHDQGSPVLFAPRPAQVII 1860
Query: 57 HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
H+ D ND+ P F++ Y E A +G + L L++RA D+DSE N
Sbjct: 1861 HVRDVNDSPPRFSEQIY-----EVAIVGP-IHPGMEL-LMVRASDEDSEVN 1904
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
G+L LD+E + Y LS+ + + + V +V+V+I D N++ P F Q Y+ V
Sbjct: 3271 GILYVNASLDFETSPKYFLSIECSRKSSSSLSDVTTVMVNITDVNEHRPQFPQDPYSTRV 3330
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E A +G ++LT + A D+D N+
Sbjct: 3331 LENALVGDVILT-------VSATDEDGPLNS 3354
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 18 PYGVLLTKKPLDYEAT--RIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT- 74
P G + T + LD E + R+ + V A + G A C+V + + D NDN P F YT
Sbjct: 2533 PNGQIATLQKLDRENSTERVIAIKVMARDGGGRVAFCTVKIILTDENDNPPQFKASEYTV 2592
Query: 75 ---GYVSEAAPI 83
VS+ +P+
Sbjct: 2593 SIQSNVSKDSPV 2604
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 10 ILKPA-------LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
+LKP+ L+ G++ T K +D+ Y L + + +A V++ I+D N
Sbjct: 396 VLKPSSENVGFKLNARTGLITTTKLMDFHDRAHYQLHI---RTSPGQASTVVVIDIVDCN 452
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
++ P F + +Y G + E P G V L + A D+D N
Sbjct: 453 NHAPLFNRSSYDGTLDENIPPGTSV-------LAVTATDRDHGENG 491
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQ 70
+HP G+L T + LD E + L VT + K+ V+V ILD NDN P F+
Sbjct: 1187 IHPVTGLLSTAQQLDRENKDEHILEVTVLDNGEPSLKSTSRVVVGILDVNDNPPIFSH 1244
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 28 LDYEATRIYNLSVTATNMA-GAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
L+ E Y L + AT +A+ V+VHILD+ND P F+ +Y +SE P+
Sbjct: 107 LNREVRDSYTLIIQATEKTLELEALTRVVVHILDQNDLKPLFSPPSYRVTISEDMPL 163
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 15 LHPPYGVLLTKKPLDYEA---TRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
L P GVL+T LD + + V + + V +H+ D N + P FTQL
Sbjct: 1499 LDPSSGVLVTVGKLDLGSGPSQHTLTVMVRDQEIPIKRNFVWVTIHVEDGNLHPPRFTQL 1558
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+Y V + G +L +RA D D NA
Sbjct: 1559 HYEASVPDTIAPGTELLQ-------VRAMDADRGVNA 1588
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYV 77
G++ + LD + L+V A + + + +VI+H+ + + P F++ Y +
Sbjct: 1610 GIITLAQKLDQANHAPHTLTVKAEDQGSPQWHDLATVIIHVYPSDRSAPIFSKSEYFVEI 1669
Query: 78 SEAAPIGALVL 88
E+ P+G+ +L
Sbjct: 1670 PESIPVGSPIL 1680
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+ P G + KKP DY+A Y+L V A + V + RN + P F Y
Sbjct: 2118 IDPYLGDISLKKPFDYQALNKYHLKVIARDGGTPSLQSEEEVLVTVRNKSNPLFQSPYYK 2177
Query: 75 GYVSE 79
V E
Sbjct: 2178 VRVPE 2182
>sp|Q9VW71|FAT2_DROME Fat-like cadherin-related tumor suppressor homolog OS=Drosophila
melanogaster GN=kug PE=2 SV=2
Length = 4705
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P GV++ +DYE+ +++NL+V TNMA + ++I+HILD NDN PYF Q Y
Sbjct: 1759 INPSTGVIVINGNIDYESIKVFNLTVKGTNMAAESSCQNIIIHILDANDNIPYFVQNEYV 1818
Query: 75 GYVSEAAPIGALVLT---NTSLPLVIRAEDKDSETNALLD 111
G + E+A IG+ VL ++ L ++ +D D N +++
Sbjct: 1819 GALPESAAIGSYVLKVHDSSKDHLTLQVKDADVGVNGMVE 1858
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCS--VIVHILDRNDNTPYFTQ 70
++P G+L T K LD E Y L+V+A + A G++ S V + + D NDN P F
Sbjct: 447 INPDSGMLYTAKQLDAEKKSSYTLTVSAIDQANVGSRKQSSAKVKISVQDMNDNDPIFEN 506
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+N ++E G+ V+ + A+D+DS N+ +
Sbjct: 507 VNKVISINENNLAGSFVVK-------LTAKDRDSGENSYI 539
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQL 71
++ P G + +PLD E Y L + A + + SV ++ILD NDN P F+
Sbjct: 3443 SIDPKNGTISVSRPLDRETISHYTLEIQACDQGDPQRCNSVPININILDTNDNAPIFSSS 3502
Query: 72 NYTGYVSEAAPIGALVLT 89
NY+ + E +G + LT
Sbjct: 3503 NYSVVLQENRLLGYVFLT 3520
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 11/94 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
G L+ LDYE ++ Y L++ A + G + + V + ILD NDN+P F Q Y
Sbjct: 3344 GDLVLNATLDYEMSKFYFLTIQAID-GGTPPLSNNAYVNISILDINDNSPTFLQNLYRIN 3402
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V+E +G+ +L ++A D+DS+ N L+
Sbjct: 3403 VNEDIFVGSKILD-------VKATDEDSDVNGLV 3429
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G L KPLD E YNLS+ AT+ A +V + + D NDNTPY + Y +E
Sbjct: 3036 GELFIAKPLDREQLMFYNLSIIATD-GKFTAKANVEIDVKDINDNTPYCLKPRYHISTNE 3094
Query: 80 AAPIG 84
+ IG
Sbjct: 3095 SISIG 3099
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G++ K LD E ++NL+V A + K ++ +V V+ILD NDN P F+ Y+ +
Sbjct: 3239 GIIRLHKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPEFSMRQYSCKI 3298
Query: 78 SEAAPIGALV 87
E A G V
Sbjct: 3299 LENATHGTEV 3308
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRND 63
+LF I K G + T+ LDYE +++NL V+A + S+++ I+D N+
Sbjct: 1024 ELFRIDKHT-----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNE 1078
Query: 64 N--TPYFTQLNYTGYVSEAAPIGALVLTNTSLPL 95
N P F Y G V E P G V+ T+ +
Sbjct: 1079 NRFAPEFDDFVYEGKVKENKPKGTFVMNVTARDM 1112
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G +L K LDYE + YNL+++ T+ A +++V ++D NDN P F + Y +SE
Sbjct: 1456 GNILLSKYLDYETQQSYNLTISVTD-GTFTAFTNLLVQVIDINDNPPQFAKDVYHVNISE 1514
Query: 80 AAPIGALVLTNTSLPLVIRAEDK 102
++++ L R EDK
Sbjct: 1515 NIEEESVIM---QLHATDRDEDK 1534
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 3 HPVQLFAI-LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNM-------AGAKAVCSV 54
+P QLF I + GV+ D E +Y L V A +M +AV S+
Sbjct: 2069 NPTQLFDIGISSGALKTTGVIF-----DREVKDLYRLFVEAKSMLYDGMNSNVRRAVTSI 2123
Query: 55 IVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ +LD NDN P F + Y VS P G +++ ++A D DS N
Sbjct: 2124 DISVLDVNDNCPLFVNMPYYATVSIDDPKGTIIMQ-------VKAIDLDSAENG 2170
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYV 77
G L KPLD E Y L +TA + +V++L D NDN P F Y V
Sbjct: 927 GCLRLNKPLDREKQDNYALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKV 986
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
E P G ++ VI A D+D NA + S
Sbjct: 987 REDLPRGTVL-------AVIEAVDEDIGPNAEIQFS 1015
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G ++ + LD+E T + L V + G + +IV++ D ND+ P FT V
Sbjct: 1559 GNVIVTQRLDFEKTAQHILIVFVKDQGAPGKRNYAKIIVNVHDHNDHHPEFTAKIIQSKV 1618
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E+A IG+ + +RA D+DS NA
Sbjct: 1619 PESAAIGSKLAE-------VRAIDRDSGHNA 1642
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 20 GVLLTKKPLDYEA-TRIYNLSVTATNMA---GAKAVCSVIVHILDRNDNTPYFTQLNYTG 75
G++ T LD+E R Y L + A++ + + + + D NDN P F ++N G
Sbjct: 558 GIVKTTSLLDFETMKRNYELIIRASDWGLPYRRQTEIKLSIVVKDINDNRPQFERVNCYG 617
Query: 76 YVSEAAPIGALVLTNTSLPL 95
V+++AP+G V +++
Sbjct: 618 KVTKSAPMGTEVFVTSAIDF 637
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 29/112 (25%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG------------AKAVCSVIVHIL-------- 59
G L K PLDYE + +++ V + + +C I + L
Sbjct: 2396 GNLYLKTPLDYEQIKYHHIVVNVKDHGSPSLSSRSNVFITGRILCRFISYKLIYDSIIPV 2455
Query: 60 -DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD-SETNAL 109
D NDN P F + +Y VS AA G V +LP +A DKD S+T++L
Sbjct: 2456 KDLNDNAPCFVEPSYFTKVSVAAVRGQFV----ALP---KAYDKDISDTDSL 2500
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYV 77
G+L LD E T Y L + C +I+ + D NDN P F+ Y V
Sbjct: 3135 GILKVASALDRETTPKYKLVAHVQDGKDFTQECFSEIIITVNDINDNMPIFSMAQYRVSV 3194
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
E A + L+ + A DKD N
Sbjct: 3195 PEDAQLNTLITK-------VHAMDKDFGVN 3217
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 24 TKKPLDYE--ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAA 81
T++ LD E A I ++++ + ++V +LD NDN+P F Q Y V +A
Sbjct: 1250 TERKLDRENQAEHILEVAISDNGSPVLSSTSRIVVSVLDINDNSPEFDQRVYKVQVPSSA 1309
Query: 82 PIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ + + A D DS N +
Sbjct: 1310 TVNQSIFQ-------VHAIDSDSGENGRI 1331
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTA--TNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G L+ ++ LD E +NL V A + + A V++ + D NDN P F Y+ V
Sbjct: 2826 GELILQQTLDREQQESHNLIVVAETSTVPVFFAYADVLIDVRDENDNYPKFDNTFYSASV 2885
Query: 78 SE 79
+E
Sbjct: 2886 AE 2887
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILDRNDNTPYFTQLN 72
+ P G L LD E Y L++T ++ S + + ILD NDN P +
Sbjct: 819 IDPDRGELQIIGYLDRERQNEYVLNITVYDLGNPTKSTSKMLPITILDVNDNRPVIQKTL 878
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
T ++E+A IG +V + A D DS NA
Sbjct: 879 ATFRLTESARIGTVV-------HCLHATDADSGINA 907
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 35 IYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
IYNL++ A ++ + A SV + I + N P FTQ Y + E API +
Sbjct: 362 IYNLTLLAEDLGTPRRFAYKSVPIQIKPESKNIPIFTQEIYEVSIPETAPI--------N 413
Query: 93 LPLV-IRAEDKDSETNALL 110
+P++ ++ D D NAL+
Sbjct: 414 MPVIRLKVSDPDLGKNALV 432
>sp|Q9Y5E2|PCDB7_HUMAN Protocadherin beta-7 OS=Homo sapiens GN=PCDHB7 PE=2 SV=1
Length = 793
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
ILKP++ Y L+T+KPLD E YN+++T T++ K ++ V + D NDN P
Sbjct: 392 ILKPSVENFY-TLVTEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A PIG+ + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G L K LDYEA + Y L++ A + G C+V+V + D NDN P + T
Sbjct: 294 INPTSGSLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
++E +P ++ V R D+DS N
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
Y L+ + LD E ++L++TA + + +V IL D NDN P F + Y
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E +P+G++V++ + A D D+ +N
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
G L + LDYEA + + V AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560
>sp|Q5DRC7|PCDB7_PANTR Protocadherin beta-7 OS=Pan troglodytes GN=PCDHB7 PE=3 SV=1
Length = 793
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
ILKP++ Y L+++KPLD E YN+++T T++ K ++ V + D NDN P
Sbjct: 392 ILKPSVENFY-TLVSEKPLDRERNTEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPA 450
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A PIG+ + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALPIGS-----------VSATDRDSGTNA 484
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G L K LDYEA + Y L++ A + G C+V+V + D NDN P + T
Sbjct: 294 INPTSGNLHLKAQLDYEAIQTYTLTIQAKDGGGLSGKCTVVVDVTDINDNRPELLLSSLT 353
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
++E +P ++ V R D+DS N
Sbjct: 354 SPIAENSP--------ETVVAVFRIRDRDSGNNG 379
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
Y L+ + LD E ++L++TA + + +V IL D NDN P F + Y
Sbjct: 191 YPELVLNQVLDREEIPEFSLTLTALDGGSPPRSGTALVRILVLDVNDNAPDFVRSLYKVQ 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E +P+G++V++ + A D D+ +N
Sbjct: 251 VPENSPVGSMVVS-------VSARDLDTGSNG 275
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTPY 67
G L + LDYEA + + V AT+ + +VH +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDRSSPALSSEALVHVLVLDANDNSPF 560
>sp|Q5DRD0|PCDB4_PANTR Protocadherin beta-4 OS=Pan troglodytes GN=PCDHB4 PE=3 SV=1
Length = 795
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 18/113 (15%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
S P L ILKP L Y L+T++PLD E + YN+++T T++ K S+ V +
Sbjct: 383 SIPDNLPFILKPTLKNFY-TLVTERPLDRETSAEYNITITVTDLGTPRLKTQQSITVQVS 441
Query: 60 DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
D NDN P F Q +YT +V E A IG+ + A D+DS TNA
Sbjct: 442 DVNDNAPAFAQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G +L KK LD+E + Y++ + AT+ G +V++ ++D NDN P + T + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
AP ++ + R D+DS N
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
Y L+ KPLD E ++L++ A + +V+V IL D NDN P F Y
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249
Query: 77 VSEAAPI 83
V E +P+
Sbjct: 250 VLENSPL 256
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
G L + LDYEA + + V A++ G+ A+ S V V +LD NDN+P+
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGASDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T V AA G LV + A D DS NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601
>sp|Q99PJ1|PCD15_MOUSE Protocadherin-15 OS=Mus musculus GN=Pcdh15 PE=1 SV=2
Length = 1943
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
+HP L +P++ + + ++L + A G A S+ + ILD N+ +PYFT +
Sbjct: 345 MHPRTAELTLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFASLHIEILDENNQSPYFTMPS 404
Query: 73 YTGYVSEAAPIGALVLT--NTSLPLVIRAEDKDSE 105
Y GY+ E+AP+GA + N + PL I A DKD E
Sbjct: 405 YQGYILESAPVGATISESLNLTTPLRIVALDKDIE 439
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
GV+ PLDYE Y L V A ++ A V + I D ND+ P F +
Sbjct: 1092 GVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFQK 1151
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
Y G VSE A + A VL ++A D+D+
Sbjct: 1152 KFYIGGVSEDARMFASVLR-------VKATDRDT 1178
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 26 KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
+P+D E + Y +TA + V + ++D NDNTP F +++Y YV
Sbjct: 472 QPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTPTFPEISYDVYV 523
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G + T L+ EA Y L V AT+ A + ++ + +LD +DN+P FT YT V
Sbjct: 774 GSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYIKVLDIDDNSPVFTNSTYTVVV 833
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKD 103
E P G TS L I A+D D
Sbjct: 834 EENLPAG------TSF-LQIEAKDVD 852
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 49 KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
K V +VI H + DRNDN+P F +Y V+E P+G + T S
Sbjct: 128 KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 176
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGA--KAVCSVIVHILDRNDNTPY 67
ALHP G L + LDYEA S+T A ++ G + +V V + D ND P
Sbjct: 871 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 930
Query: 68 FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
F++ Y G V+ A G + T + AED D
Sbjct: 931 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 959
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 34 RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
+ Y L+V A++ A ++C+V + +L N+ +P F QL Y+ VSEA IGA++L
Sbjct: 582 QTYALTVQASDNAPPAERRHSICTVYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAILL 641
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYF 68
G+L K LD E+T Y L VTA++ + +V + + D NDN P F
Sbjct: 673 GILSLGKALDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNAPVF 722
>sp|Q9Y5E5|PCDB4_HUMAN Protocadherin beta-4 OS=Homo sapiens GN=PCDHB4 PE=2 SV=1
Length = 795
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 18/113 (15%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
S P L ILKP L Y L+T++PLD E + YN+++ T++ K ++ V +
Sbjct: 383 SIPDNLPFILKPTLKNFY-TLVTERPLDRETSAEYNITIAVTDLGTPRLKTQQNITVQVS 441
Query: 60 DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
D NDN P FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 442 DVNDNAPAFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G +L KK LD+E + Y++ + AT+ G +V++ ++D NDN P + T + E
Sbjct: 298 GEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISSLTSSIPE 357
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
AP ++ + R D+DS N
Sbjct: 358 NAP--------ETVVSIFRIRDRDSGENG 378
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGY 76
Y L+ KPLD E ++L++ A + +V+V IL D NDN P F Y
Sbjct: 190 YPDLVQDKPLDREEQPEFSLTLVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQ 249
Query: 77 VSEAAPI 83
V E +P+
Sbjct: 250 VLENSPL 256
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
G L + LDYEA + + V A++ G+ A+ S V V +LD NDN+P+
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGASDR-GSPALSSEALVRVLVLDTNDNSPFVLYPLQNGS 568
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T V AA G LV + A D DS NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601
>sp|Q9Y5G3|PCDGD_HUMAN Protocadherin gamma-B1 OS=Homo sapiens GN=PCDHGB1 PE=2 SV=1
Length = 927
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L+P G + T LD+E T Y LSV A + A C+V + I+D NDN P T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFS 349
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ E + +G ++ +I+ DKDS N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
Y VLL +KPLD E + L +TA M G S HI D NDN P F+Q Y
Sbjct: 188 YPVLLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E P G VL + A D+D NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ L+ E T YN+++ AT+ + S+ +HI D NDN P F Q +Y +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456
Query: 77 VSEAAPIGALV 87
VSE P GA +
Sbjct: 457 VSENNPPGASI 467
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTP 66
++ P GV+ ++ D+E R + L++ A + +V + +L D NDN P
Sbjct: 502 SVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAP 556
>sp|Q5DRE9|PCDA3_PANTR Protocadherin alpha-3 OS=Pan troglodytes GN=PCDHA3 PE=3 SV=1
Length = 950
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ PLD E+ Y L VTA + A SV V + D NDN P F+Q YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E P G + T + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
L P G + K +D+E ++ Y + V AT+ C+V++ I+D NDN P +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIHS 354
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ V E +P+ ++ +I D+DS N
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
++H G + +PLD+E + V+A + AG + S + V +LD NDN P
Sbjct: 509 SVHAESGKVYALQPLDHEELELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLM 567
Query: 71 LNYTGY---VSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
G VSE P +GA + +RA D DS NA L
Sbjct: 568 PRVGGIGGAVSELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
L+ KK L+ E T + L +TA + G K + + +LD NDN P F + Y +
Sbjct: 194 LVLKKYLNREDTPKHYLLITAID--GGKPELTGTTQLKITVLDVNDNAPAFERTIYKVRL 251
Query: 78 SEAAPIGALVLT 89
E AP G LV+T
Sbjct: 252 LENAPNGTLVVT 263
>sp|Q9Y5H8|PCDA3_HUMAN Protocadherin alpha-3 OS=Homo sapiens GN=PCDHA3 PE=2 SV=1
Length = 950
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ PLD E+ Y L VTA + A SV V + D NDN P F+Q YT +
Sbjct: 404 YYSLVLDSPLDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVF 463
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E P G + T + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSARDADAQENALV 490
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLN 72
L P G + K +D+E ++ Y + V AT+ C+V++ I+D NDN P +
Sbjct: 295 LDPVNGQISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQS 354
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ V E +P+ ++ +I D+DS N
Sbjct: 355 LSLPVLEDSPLSTVI-------ALISVSDRDSGVNG 383
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYTGYV 77
L+ KK L+ E T + L +TA + G K + + +LD NDN P F + Y +
Sbjct: 194 LVLKKNLNREDTPKHYLLITAID--GGKPELTGTTQLKITVLDVNDNAPAFERTIYKVRL 251
Query: 78 SEAAPIGALVLT 89
E AP G LV+T
Sbjct: 252 LENAPNGTLVVT 263
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQ 70
++H G + +PLD+E + V+A + AG + S + V +LD NDN P
Sbjct: 509 SVHAESGKVYALQPLDHEELELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLM 567
Query: 71 LNYTGY---VSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
G VSE P +GA + +RA D DS NA L
Sbjct: 568 PRVGGIGGAVSELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607
>sp|Q5DRB0|PCDGD_PANTR Protocadherin gamma-B1 OS=Pan troglodytes GN=PCDHGB1 PE=3 SV=1
Length = 927
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L+P G + T LD+E T Y LSV A + A C+V + I+D NDN P T ++++
Sbjct: 290 LNPNTGDITTNGTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFVSFS 349
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ E + +G ++ +I+ DKDS N ++
Sbjct: 350 NQIPEDSDLGTVI-------ALIKVRDKDSGQNGMV 378
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ L+ E T YN+++ AT+ + S+ +HI D NDN P F Q +Y +
Sbjct: 397 YYKLVIAGALNREQTADYNVTIIATDKGKPALSSRTSITLHISDINDNAPVFHQASYVVH 456
Query: 77 VSEAAPIGALV 87
VSE P GA +
Sbjct: 457 VSENNPPGASI 467
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL----DRNDNTPYFTQLNYT 74
Y LL +KPLD E + L +TA M G S HI D NDN P F+Q Y
Sbjct: 188 YPELLLEKPLDREHQSSHRLILTA--MDGGDPPLSGTTHIWIRVTDANDNAPVFSQEVYR 245
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E P G VL + A D+D NA
Sbjct: 246 VSLQENVPWGTSVLR-------VMATDQDEGINA 272
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTP 66
++ P GV+ ++ D+E R + L++ A + +V + +L D NDN P
Sbjct: 502 SVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAP 556
>sp|Q5DRC2|PCDG1_PANTR Protocadherin gamma-A1 OS=Pan troglodytes GN=PCDHGA1 PE=3 SV=1
Length = 931
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + K+PLD+E ++Y++ V A + AG A V++ +LD NDNTP T + T V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKAKVLIKVLDVNDNTPEVTITSVTTAVPE 358
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
P G ++ +I D+DS N
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
Y L+T++ LD E YN+++TA + G A+ + + + + D NDN+P F Q +Y+
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459
Query: 76 YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Y+ E P GA + + +RA D DS NA +
Sbjct: 460 YIPENNPRGASIFS-------VRAHDLDSNENAQI 487
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
S+P + + A P + ++ + PLD E +++L +TA++ G + V S + +
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231
Query: 58 ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
++D NDN P FTQ Y V E P+G + L++ A D D N
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275
>sp|Q9NRJ7|PCDBG_HUMAN Protocadherin beta-16 OS=Homo sapiens GN=PCDHB16 PE=1 SV=3
Length = 776
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
+LKP++ Y L+T++ LD EA YN+++T T+M K ++ V I D NDN P
Sbjct: 392 LLKPSVKNFY-TLVTERALDREARAEYNITLTVTDMGTPRLKTEHNITVQISDVNDNAPT 450
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G + +K +D+E Y + + AT+ G C++++ ++D NDN P T T
Sbjct: 294 VNPMTGEVRLRKQVDFEMVTSYEVRIKATDGGGLSGKCTLLLQVVDVNDNPPQVTMSALT 353
Query: 75 GYVSEAAP 82
+ E +P
Sbjct: 354 SPIPENSP 361
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ K LD E L++TA + V + ++D NDN P F Q Y
Sbjct: 191 YPELVLDKELDREEEPQLRLTLTALDGGSPPRSGTAQVRIEVVDINDNAPEFEQPIYKVQ 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E +P+G+LV T + A D D N
Sbjct: 251 IPENSPLGSLVAT-------VSARDLDGGANG 275
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
G L + LDYEA R + V+AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALREFEFRVSATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 569
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T V AA G LV + A D DS NA L
Sbjct: 570 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 602
>sp|Q96QU1|PCD15_HUMAN Protocadherin-15 OS=Homo sapiens GN=PCDH15 PE=1 SV=2
Length = 1955
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
+HP L +P++ + + ++L + A G A + + ILD N+ +PYFT +
Sbjct: 340 MHPRTAELSLLEPVNRDFHQKFDLVIKAEQDNGHPLPAFAGLHIEILDENNQSPYFTMPS 399
Query: 73 YTGYVSEAAPIGALVLTNTSL--PLVIRAEDKDSE 105
Y GY+ E+AP+GA + + +L PL I A DKD E
Sbjct: 400 YQGYILESAPVGATISDSLNLTSPLRIVALDKDIE 434
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 26 KPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
+P+D E + Y S+TA + V + ++D NDNTP F +++Y YV
Sbjct: 467 QPVDREEQQTYTFSITAFDGVQESEPVIVNIQVMDANDNTPTFPEISYDVYV 518
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA---------VCSVIVHILDRNDNTPYFTQ 70
GV+ PLDYE Y L V A ++ A V + I D N++ P F +
Sbjct: 1087 GVIYVNGPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENNHPPVFQK 1146
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
Y G VSE A + VL ++A DKD+
Sbjct: 1147 KFYIGGVSEDARMFTSVLR-------VKATDKDT 1173
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G + T L+ E Y L V AT+ A + ++ + +LD +DN+P FT YT V
Sbjct: 769 GSIYTAVKLNREVRDYYELVVVATDGAVHPRHSTLTLAIKVLDIDDNSPVFTNSTYTVLV 828
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKD 103
E P G +L I A+D D
Sbjct: 829 EENLPAGTTILQ-------IEAKDVD 847
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 49 KAVCSVIVH-----ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTS 92
K V ++I H + DRNDN+P F +Y V+E P+G + T S
Sbjct: 123 KKVGTIIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFS 171
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Query: 34 RIYNLSVTATNMA----GAKAVCSVIVHILDRNDNTP-YFTQLNYTGYVSEAAPIGALVL 88
R Y L+V A + A ++C+V + +L N+ +P F QL Y+ +SEA +GA++L
Sbjct: 577 RTYALTVQAADNAPPAERRNSICTVYIEVLPPNNQSPPRFPQLMYSLEISEAMRVGAVLL 636
Query: 89 TNTSLPLVIRAEDK--DSETNALLDG 112
++A D+ DS T A+ +G
Sbjct: 637 N-------LQATDREGDSITYAIENG 655
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVT----ATNMAGAK--AVCSVIVHILDRNDNTPY 67
ALHP G L + LDYEA S+T A ++ G + +V V + D ND P
Sbjct: 866 ALHPFTGELSLLRSLDYEAFPDQEASITFLVEAFDIYGTMPPGIATVTVIVKDMNDYPPV 925
Query: 68 FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKD 103
F++ Y G V+ A G + T + AED D
Sbjct: 926 FSKRIYKGMVAPDAVKGTPITT-------VYAEDAD 954
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-MAGAKAVCSVIVHILDRNDNTPYF 68
G+L K LD E+T Y L +TA++ + +V + + D NDN P F
Sbjct: 668 GILTLGKALDRESTDRYILIITASDGRPDGTSTATVNIVVTDVNDNAPVF 717
>sp|Q5DRA5|PCDGJ_PANTR Protocadherin gamma-B7 OS=Pan troglodytes GN=PCDHGB7 PE=3 SV=1
Length = 929
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G +LT++PLD+E Y +++ A + C VIV ++D NDN+P + + + E
Sbjct: 299 GNILTQQPLDFEEVERYTMNIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+P G +V + + D+DS N
Sbjct: 359 DSPPGVVV-------ALFKTRDRDSGENG 380
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
Y L+T + LD E T YN+++ AT+ S + +HI D NDN P F Q Y +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460
Query: 77 VSEAAPIGALV 87
V E GA +
Sbjct: 461 VPENNQPGASI 471
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ +K LD E ++L +TA + + + ++D NDN P F+Q Y
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E P G +L ++A D+D N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTP 66
GV+ ++ D+E R + L++ A + +V + +L DRNDN P
Sbjct: 512 GVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAP 560
>sp|Q5DRD8|PCDBB_PANTR Protocadherin beta-11 OS=Pan troglodytes GN=PCDHB11 PE=3 SV=1
Length = 797
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
S P L +LK ++ Y L T++PLD E+T YN+++T T++ K + V +
Sbjct: 384 SIPEDLPFVLKSSVEN-YYTLETERPLDRESTAEYNITITVTDLGIPRLKTEHNTTVLVS 442
Query: 60 DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
D NDN P FTQ +YT +VSE A IG+ + A D+DS TNA
Sbjct: 443 DVNDNAPTFTQTSYTLFVSENNSPALHIGS-----------VSATDRDSGTNA 484
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
Y L+ K LDYE + LS T + G V V ++D NDN+P F Q Y
Sbjct: 191 YPELVLDKALDYE--ELPELSFILTALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E + +G+L+LT + A D DS TN
Sbjct: 249 VKIPENSILGSLILT-------VSAWDLDSGTNG 275
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 27 PLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGAL 86
PLD+E Y++ + AT+ G +V + ++D NDN P T + T + E P
Sbjct: 306 PLDFETIESYSIIIQATDRGGLFGKSTVRIQVIDVNDNAPEITVSSITSPIPENTP---- 361
Query: 87 VLTNTSLPLVIRAEDKDSETNA 108
++ +V +D DS N
Sbjct: 362 ----ETVVMVFSIQDIDSGDNG 379
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
G L + LDYEA + + V AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560
>sp|Q9Y5F8|PCDGJ_HUMAN Protocadherin gamma-B7 OS=Homo sapiens GN=PCDHGB7 PE=2 SV=1
Length = 929
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G +LT++PLD+E Y +++ A + C VIV ++D NDN+P + + + E
Sbjct: 299 GNILTQQPLDFEEVERYTINIEAKDRGSLSTRCKVIVEVVDENDNSPEIIITSLSDQIME 358
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+P G +V + + D+DS N
Sbjct: 359 DSPPGVVV-------ALFKTRDQDSGENG 380
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGY 76
Y L+T + LD E T YN+++ AT+ S + +HI D NDN P F Q Y +
Sbjct: 401 YYKLVTDEALDREQTPEYNVTIAATDRGKPPLSSSKTITLHITDVNDNAPVFGQSAYLVH 460
Query: 77 VSEAAPIGALV 87
V E GA +
Sbjct: 461 VPENNQPGASI 471
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ +K LD E ++L +TA + + + ++D NDN P F+Q Y
Sbjct: 191 YPELVLQKTLDRETQSAHHLVLTALDGGDPPRSGTAQIRILVIDANDNPPVFSQDVYRVS 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E P G +L ++A D+D N+
Sbjct: 251 LREDVPPGTSILR-------VKATDQDEGINS 275
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTP 66
GV+ ++ D+E R + L++ A + +V + +L DRNDN P
Sbjct: 512 GVVFAQRAFDHEQLRTFELTLQARDQGSPALSANVSLRVLVGDRNDNAP 560
>sp|Q9Y5F0|PCDBD_HUMAN Protocadherin beta-13 OS=Homo sapiens GN=PCDHB13 PE=2 SV=1
Length = 798
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 15/92 (16%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLNYTGYVSE 79
LLT++PLD E+ YN+++T T++ + ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLITQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462
Query: 80 AAPIGALVLTNTSLPLVIR---AEDKDSETNA 108
N S L IR A D+DS TNA
Sbjct: 463 ----------NNSPALHIRSVSATDRDSGTNA 484
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G + KK LD+E + Y +++ A + C+V++ ++D ND+ P T +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354
Query: 75 GYVSEAAPIGALVLTNTS 92
+ E AP + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ K LD E L++TA + V + +LD NDN P F Q Y
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251
Query: 77 VSEAAPIGALVL 88
+SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
G L + LDYEA + + V A++ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQGFQFRVGASDH-GSPALSSEALVRVVVLDANDNSPF 560
>sp|Q6V1P9|PCD23_HUMAN Protocadherin-23 OS=Homo sapiens GN=DCHS2 PE=2 SV=1
Length = 2916
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 12/102 (11%)
Query: 12 KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF 68
K ++HP G + T+KPLD+E + L+V A G+ CS V + ++D NDN P F
Sbjct: 423 KFSIHPRLGTIRTRKPLDHETQPVVVLTVQA--QLGSAPACSSTEVNITVMDVNDNHPAF 480
Query: 69 TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ + +S+ P G T+L L RAED+DS N L+
Sbjct: 481 LRTSDEIRISQTTPPG------TALYLA-RAEDRDSGRNGLI 515
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 20 GVLLTKKP--LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G L K+P LD+E L V A + +G +A C V V I D NDN+P F Q Y V
Sbjct: 1738 GQLTVKEPKFLDFEVRNEVQLIVLAES-SGHRAYCKVAVLIQDENDNSPCFEQSIYQASV 1796
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
SE+ A V+ + A D DS N L++ S
Sbjct: 1797 SESQLYNAHVIQ-------VFATDLDSGLNGLIEYS 1825
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 16/109 (14%)
Query: 8 FAILKPALHPPY-----GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHIL 59
F + H Y G L+ LD EA+ + L + A++ +G + S + + +L
Sbjct: 2143 FHVETKFFHSEYPYKQVGYLVLLHSLDREASASHELVILASD-SGCPPLSSTAVISIQVL 2201
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
D NDN P F+ L+Y +V E+ P+G+ + V+ A D+D+ ++A
Sbjct: 2202 DVNDNPPNFSSLSYHTHVKESTPLGSHI-------TVVSANDRDTGSHA 2243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK-AVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
GVL KPLDYE + L+V A++ + V V +LD ND+ P F +++ V
Sbjct: 2265 GVLYLIKPLDYEKMTKFTLTVQASDAEKKHFSFAVVFVSVLDDNDHAPQFMFSSFSCIVP 2324
Query: 79 EAAPIGALVLTNTSL 93
E PI + + + +L
Sbjct: 2325 ENLPISSTICSINAL 2339
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 12 KPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQL 71
K A+ GV++ K LD+E Y L + ++ +++V +LD NDN P F+Q
Sbjct: 1937 KFAIDQNTGVVVLVKTLDFEEMTEYELLIQISDSVHYTE-GALVVRVLDVNDNPPVFSQD 1995
Query: 72 NYTGYVSEAAPIGALVLT 89
Y V E+ P+G VLT
Sbjct: 1996 FYQVTVPESIPVGYSVLT 2013
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G L T + LD E + L + +++ +V + V +LD ND++P F L Y V
Sbjct: 1428 GELSTTRALDREQISNFTLVILCSDLGDPPRSSVIHLQVRVLDANDHSPSFPTLYYQSSV 1487
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E A +G +V LV+ A DKD N
Sbjct: 1488 REDAEVGTVV-------LVLSAVDKDEGLNG 1511
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTGY 76
G L K LDYE T Y V T+ + ++ S + + + D+ND++P F
Sbjct: 1004 GDLFLSKELDYETTSHYLFRVITTDHSKNLSLSSTVFLSIDVEDQNDHSPSFQDELIVIS 1063
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKD 103
V E PIG LV V A+D D
Sbjct: 1064 VEENVPIGTLV-------YVFNAKDDD 1083
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
GV+ TK LDYE T Y+L V AT+ M + V + D NDN P F
Sbjct: 1842 GVITTKAILDYELTSSYSLIVQATDKGMPRLSNTTVIKVQVTDINDNAPAF--------- 1892
Query: 78 SEAAPIGALVLTNTSLPLVI 97
P A+ +T SLP VI
Sbjct: 1893 ---LPSEAVEITEDSLPGVI 1909
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
G+L T PLDYE + L+V A + G A+ S + V +LD ND P F Q Y
Sbjct: 1219 GLLTTTCPLDYEMKTQHILTVLALD-DGTPALSSSQTLTVTVLDVNDEAPVFKQHLYEAS 1277
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E G V + A D+DS N+ L
Sbjct: 1278 VKENQNPGEFVTR-------VEALDRDSGVNSKL 1304
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTA---TNMAGAKAVCSVIVHILDRNDNTPYF 68
+ P G + ++ DYE+T+ YN V A + +VIV + D NDN+P F
Sbjct: 635 GIRPYTGWIYLRRQFDYESTQTYNFRVFAWIPEDGFLQNVSTTVIVRVWDENDNSPTF 692
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA------GAKAVCSVIVHILDRNDNTPYF 68
+HP +G L+T LD E+ L+VTA++ A +++ + IV ILD ND+ P F
Sbjct: 1107 IHPSFGTLVTVSRLDRESIPTVILTVTASDQAVNVTDRRLRSLTAQIV-ILDVNDHNPTF 1165
Query: 69 TQLNYTGYVSEAAPIGALV 87
+V E +G+LV
Sbjct: 1166 ISFP-NAHVKEDVTVGSLV 1183
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 16/112 (14%)
Query: 1 MSHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILD 60
MS+ LF I P G + K+ LDYE Y L+V A + A A V V I
Sbjct: 2363 MSYDHDLFLI-----DPLTGDIHAKQILDYENGNKYCLTVQAKDKGDATASLVVWVDIEG 2417
Query: 61 RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDG 112
++ P FTQ Y + E N L+ R E D+ +A +DG
Sbjct: 2418 IDEFEPIFTQDQYFFTLPEK---------NKDRQLIGRVEASDA--DAGIDG 2458
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL----NY 73
G L+ LD E + ++V T+ A +V V + D NDN P+F Q
Sbjct: 789 GELINWVALDREHRGHHEMTVLVTDRGSPPRNATMAVYVSVTDINDNRPFFPQCLPGKEL 848
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E P+ LV T + A+D D NA
Sbjct: 849 HVKVLEGQPVNMLVTT-------VFAKDPDEGNNA 876
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3
Length = 3503
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 23 LTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVSE 79
L+ +PLD E Y L + A++ K+ C++ + + D+NDN P F YTG V E
Sbjct: 1851 LSARPLDREQHSRYTLQIQASDRGQPKSRQGHCNITIFVEDQNDNAPRFKLSKYTGSVQE 1910
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
AP+G V+ I A D D NA L
Sbjct: 1911 DAPLGTSVVQ-------ISAVDADLGVNARL 1934
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
+ P G + + PLD E Y L+V AT+ A A VIV +LD NDN P F +
Sbjct: 1044 GIFPNSGWIYLRAPLDRETRDRYQLTVLATDNGTPAAHAKTRVIVRVLDANDNDPKFQKS 1103
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Y + E G++V V+ A D D NA +
Sbjct: 1104 KYEFRIEENLRRGSVV-------GVVTASDLDLGENAAI 1135
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
++ P GV+ T+ LD+E IY L V A++ + V + V +LD NDN P FT
Sbjct: 1256 SIDPTSGVIRTRVVLDHEERSIYRLGVAASDGGNPPRETVRMLRVEVLDLNDNRPTFTSS 1315
Query: 72 NYTGYVSEAAPIGALV 87
+ V E A +G +V
Sbjct: 1316 SLVFRVREDAALGHVV 1331
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 16/107 (14%)
Query: 7 LFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRND 63
LFAI + H L+ + LDYE+++ + L VTAT+ G ++ + ++V + D ND
Sbjct: 925 LFAIDARSGH-----LILSQHLDYESSQRHTLIVTATD-GGVPSLSTNLTILVDVQDVND 978
Query: 64 NTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
N P F + Y+ VSE+ I A ++ + A D D+ NA +
Sbjct: 979 NPPVFEKDEYSVNVSESRSINAQIIQ-------VNASDLDTGNNARI 1018
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 33/126 (26%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY------ 73
G++ + DYE + Y++ + A++M G KA +V V I R++ TP FT+ Y
Sbjct: 2868 GLVTSAFVFDYEQRQRYDMELLASDMGGKKASVAVRVEIESRDEFTPQFTERTYRFVLPA 2927
Query: 74 -----TGYV--------SEAAPIGALV-----------LTNTSLPLVIRAE---DKDSET 106
GYV S++ P G +V + +S ++I+ + D D +
Sbjct: 2928 AVALPQGYVVGQVTATDSDSGPDGRVVYQLSAPHSHFKVNRSSGAVLIKRKLKLDGDGDG 2987
Query: 107 NALLDG 112
N +DG
Sbjct: 2988 NLYMDG 2993
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLN 72
+ P G++ T+ +D E + L+V A + + + +V+V I D NDN P F Q
Sbjct: 503 IDPQTGLITTRSHIDCETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSF 562
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
Y V+E P+G +L + A D D NA+++
Sbjct: 563 YNVSVAENEPVGRCILK-------VSASDPDCGVNAMVN 594
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILDRNDNTPYFTQLNYT 74
G L + PLD+EA + Y L V A + + + +V + ILD ND+ P+F N +
Sbjct: 1496 GALSLQAPLDFEAVQEYLLIVQALDQSSNVTERLQTSVTVRLRILDANDHAPHFVSPNSS 1555
Query: 75 G------YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
G ++S+A IG +V I A D+DS N L
Sbjct: 1556 GGKTASLFISDATRIGEVVAH-------IVAVDEDSGDNGQL 1590
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFT--Q 70
+HP G + T++PLD E +Y+L V A + A V +H+ D NDN P Q
Sbjct: 1148 VHPVTGEISTREPLDRELRELYDLVVEARDQGTPVRSARVPVRIHVSDVNDNAPEIADPQ 1207
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ V E P G V+ +RA D+D NA
Sbjct: 1208 EDVVS-VREEQPPGTEVVR-------VRAVDRDHGQNA 1237
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 20 GVLLTKKPLDYEA-TRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYFTQLNYTG 75
GVL LDY++ + Y L + A + + +CS+ + + D NDN P F Y
Sbjct: 2757 GVLFVNNRLDYDSGAKSYELIIRACDSHHQRPLCSLQPFRLELHDENDNEPKFPLTEYVH 2816
Query: 76 YVSEAAPIGALVL 88
+++E P+G+ V
Sbjct: 2817 FLAENEPVGSSVF 2829
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 27 PLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
PLD E Y LSV AT+ A S+ + I D NDN P F Q Y V E A G
Sbjct: 408 PLDREIVSNYTLSVVATDKGTPPLHASKSIFLRITDVNDNPPEFEQDLYHANVMEVADPG 467
Query: 85 ALVLTNTSLPLVIRAEDKDSETNALL 110
VL + A D+D N+ L
Sbjct: 468 TSVLQ-------VLAHDRDEGLNSAL 486
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP---------YFTQ 70
G L+ K+ LDYE + Y L V A++ A +A + V + D NDN P YF
Sbjct: 2432 GKLVLKRRLDYELQQEYELDVIASD-AAHEARTVLTVRVNDENDNAPVFLAQQPPAYFAI 2490
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
L +SE+ + +LT + A D DSE N
Sbjct: 2491 LPAISEISESLSVDFDLLT-------VNATDADSEGN 2520
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPY 67
+++PA G++ T LD E IY L + AT+ + ++ V I+D NDN P
Sbjct: 2318 VIEPAFS---GIVRTNIVLDREIRDIYKLKIIATDEGVPQMTGTATIRVQIVDVNDNQPT 2374
Query: 68 FTQLNYTGYVSEAAPIGALVLT 89
F N VSEA +GA++ +
Sbjct: 2375 FPPNNLV-TVSEATELGAVITS 2395
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 28 LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
LD E T Y+L + A + + +V + I D NDN P F Q Y V E A +G
Sbjct: 191 LDRETTPGYSLLIEALDGGTPPLRGFMTVNITIQDVNDNQPIFNQSRYFATVPENATVGT 250
Query: 86 LVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
VL + A D D++ N L++ + N
Sbjct: 251 SVLQ-------VYASDTDADENGLVEYAIN 273
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 20 GVLLTKKPLDYEATRIYNLSV-----TATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
G L+ + LD E + L + TA+N + A+ +V + + D NDN P + Q
Sbjct: 1380 GNLVVARLLDREVQSEFRLEIRALDTTASNNPQSSAI-TVKIEVADVNDNAPEWPQDPID 1438
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
VSEA P+G ++ T A D D+ TN L
Sbjct: 1439 LQVSEATPVGTIIHNFT-------ATDADTGTNGDL 1467
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQLNYTGY 76
G++ T LD E YN V AT+ + A V +++LD NDN P F + Y G
Sbjct: 1953 GLITTVGKLDRELQASYNFMVLATDGGRYEVRSATVPVQINVLDINDNRPIFERYPYIGQ 2012
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V AL+ +L L ++A D D NA
Sbjct: 2013 VP------ALIQPGQTL-LKVQALDADLGANA 2037
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 6 QLFAILKPALHPPYGVLLTK-----KPLDYEATRIYNLSVTATNMAG--------AKAVC 52
Q AI+ + +L +K KPLD E +Y L + ++ G + +
Sbjct: 2624 QSLAIIAGNEESAFELLQSKAIVLVKPLDRERNDLYKLRLVLSHPHGPPLISSLNSSSGI 2683
Query: 53 SVIVHILDRNDNTPYFTQ-LNYTGYVSEAAPI 83
SVI+ ILD NDN P F + Y +SE AP+
Sbjct: 2684 SVIITILDANDNFPIFDRSAKYEAEISELAPL 2715
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 52 CSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+++ + D NDN+P F+Q + VSE G V + A D D+ +NA L
Sbjct: 2253 AELVIELEDENDNSPKFSQKQFVATVSEGNNKGTFVAQ-------VHAFDSDAGSNARL 2304
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + LD+E Y V AT+ G + + + D NDN P F Y + E
Sbjct: 614 GEICIAGELDFERRSSYEFPVLATDRGGLSTTAMIKMQLTDVNDNRPVFYPREYKVSLRE 673
Query: 80 ---------AAPIGALVLTN 90
+ PI A+V T+
Sbjct: 674 SPKASSQASSTPIVAVVATD 693
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 6 QLFAILKPA-----LHPPYGVL---LTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH 57
++ I++PA +HP GV+ +++ ++ Y + + A + AG A+ S +
Sbjct: 2523 KVIYIIEPAQEGFSVHPSNGVVSVNMSRLQPAVSSSGDYFVRIIAKD-AGKPALKSSTLL 2581
Query: 58 ILDRNDN---TPYFTQLNYTGYVSEAAPIGALVL 88
+ NDN F Q Y +SEAAP+G++VL
Sbjct: 2582 RVQANDNGSGRSQFLQNQYRAQISEAAPLGSVVL 2615
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
G + KPLD+EA L++ AT G V V + + D NDN P F
Sbjct: 829 GNIRIAKPLDHEAKSQVLLNIQAT--LGEPPVYGHTQVNIEVEDVNDNAPEFEASMVRIS 886
Query: 77 VSEAAPIGALVLTNTSLPL-VIRAEDKDSETNA 108
V E+A +GA PL A DKDS ++
Sbjct: 887 VPESAELGA--------PLYAAHAHDKDSGSSG 911
>sp|Q5DRC9|PCDB5_PANTR Protocadherin beta-5 OS=Pan troglodytes GN=PCDHB5 PE=3 SV=1
Length = 795
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
+LKP L Y L+T++ LD E+ YN+++T T+M K ++ V + D NDN P
Sbjct: 391 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 449
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 450 FTQTSYTLFVRENNSPALQIGS-----------VSATDRDSGTNA 483
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + K+ LD+EAT YN+ + AT+ G C+V + ++D NDN P T + + E
Sbjct: 298 GEIRLKRALDFEATPYYNVEIVATDGGGLSGKCTVAMEVVDVNDNAPELTMSTLSSPIPE 357
Query: 80 AAPIGALVLTNTSLP 94
AP + + + S P
Sbjct: 358 NAPETVVAVFSVSDP 372
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
Y L+ K LD E +L++TA + GA ++ + +LD NDN P F Q Y
Sbjct: 191 YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSLYEV 249
Query: 76 YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
V E +P+ +LV +V+ A D D+
Sbjct: 250 QVPENSPLNSLV-------VVVSARDLDA 271
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
G L + LDYEA + + V AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T V AA G LV + A D DS NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601
>sp|Q5DRD6|PCDBD_PANTR Protocadherin beta-13 OS=Pan troglodytes GN=PCDHB13 PE=3 SV=1
Length = 798
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 17/93 (18%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
LLT++PLD E+ YN+++T T++ K ++ V I D NDN P FTQ +YT +V E
Sbjct: 403 LLTERPLDRESRAEYNITITVTDLGTPMLKTQLNMTVLIADVNDNAPAFTQTSYTLFVRE 462
Query: 80 ----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
A IG+ + A D+DS TNA
Sbjct: 463 NNSPALHIGS-----------VSATDRDSGTNA 484
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G + KK LD+E + Y +++ A + C+V++ ++D ND+ P T +T
Sbjct: 295 INPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTVLIQVIDVNDHAPEVTMSAFT 354
Query: 75 GYVSEAAPIGALVLTNTS 92
+ E AP + L + S
Sbjct: 355 SPIPENAPETVVALFSVS 372
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ K LD E L++TA + V + +LD NDN P F Q Y
Sbjct: 192 YPELVLDKALDREEEAELRLTLTALDGGSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQ 251
Query: 77 VSEAAPIGALVL 88
+SE +P+G LV+
Sbjct: 252 ISEDSPVGFLVV 263
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
G L + LDYEA + + V A++ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQGFEFRVGASDH-GSPALSSEALVRVLVLDANDNSPF 560
>sp|Q6V0I7|FAT4_HUMAN Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2
Length = 4981
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
A++ G+L K LDYE + + ++++A + CSV V+++D NDN+P F
Sbjct: 3138 AINSSTGILTLAKALDYELCQKHEMTISAIDGGWVARTGYCSVTVNVIDVNDNSPVFLSD 3197
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+Y V E AP G V+ + A D DS TNA++
Sbjct: 3198 DYFPTVLENAPSGTTVIH-------LNATDADSGTNAVI 3229
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L+P GV + LDYE + Y L+V A + G V +ILD NDN P F+ +Y+
Sbjct: 1891 LNPITGVFNLTRLLDYEVQQYYILTVRAEDGGGQFTTIRVYFNILDVNDNPPIFSLNSYS 1950
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ E P+G+ V LV D D N+ L
Sbjct: 1951 TSLMENLPVGSTV-------LVFNVTDADDGINSQL 1979
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQL 71
++ P G + K LD+E +Y L++TA + + SV++H+ D NDN P F
Sbjct: 1364 SISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIHVRDFNDNPPSFPPG 1423
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ + E PIG V++ + A D D++ N L
Sbjct: 1424 DIFKSIVENIPIGTSVIS-------VTAHDPDADINGQL 1455
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 3 HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI--VHILD 60
+P LFAI + G + PLD A Y + + A++M + SVI V++ D
Sbjct: 935 NPKNLFAI-----NEKNGTISLLGPLDVHAGS-YQIEILASDMGVPQLSSSVILTVYVHD 988
Query: 61 RNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
NDN+P F QL+Y +SE+ P+ + ++A DKDS N
Sbjct: 989 VNDNSPVFDQLSYEVTLSESEPVNSRFFK-------VQASDKDSGANG 1029
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLN 72
L P G L T LD E Y+L V AT++ ++ + V +LD NDN+P F +
Sbjct: 634 LDPVSGRLSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQ 693
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
Y ++ E P G+ + T + A D D TN
Sbjct: 694 YFAHIKENEPGGSYITT-------VSATDPDLGTNG 722
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTP-----Y 67
+ P G++ ++PLD+EA R Y+L+V A + ++ +LD NDN P Y
Sbjct: 298 MDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRY 357
Query: 68 FTQLNYTGYVSEAAPIGALV 87
F + V E A +G +V
Sbjct: 358 FPATSRYASVDENAQVGTVV 377
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYV 77
G + + +PLD E Y L++ +++ SV +++ILD NDN P F+Q+ ++ +V
Sbjct: 2723 GEIRSVRPLDREKVSHYVLTIKSSDKGSPSQSTSVKVMINILDENDNAPRFSQI-FSAHV 2781
Query: 78 SEAAPIGALV 87
E +P+G V
Sbjct: 2782 PENSPLGYTV 2791
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 28 LDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
LDYEAT Y+L + A + + C++ + ILD NDNTP F + V E IG
Sbjct: 1273 LDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGE 1332
Query: 86 LVLTNTSLPLVIRAEDKDSETNALL 110
LV + + A D DS NA L
Sbjct: 1333 LVSS-------VTATDSDSGDNADL 1350
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 18 PYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTG 75
P G L K LD E Y L V A++ A A +V V + D NDN P F NYT
Sbjct: 1048 PDGQLYIKSELDRELQDRYVLMVVASDRAVEPLSATVNVTVILEDVNDNRPLFNSTNYTF 1107
Query: 76 YVSEAAPIGALV 87
Y E G+ V
Sbjct: 1108 YFEEEQRAGSFV 1119
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)
Query: 28 LDYEATRIYNLSVTATNMAGA---------KAVCSVIVHILDRNDNTPYFTQLNYTGYVS 78
LD E YNL+V+ ++ GA +V S+++ + D ND+ P F+Q Y +S
Sbjct: 426 LDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLS 485
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E AP G+ V I A D DS NA L
Sbjct: 486 EEAPPGSYVSG-------ISATDGDSGLNANL 510
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLN 72
+ P GV+ T+ LD+E + Y+L+V A N+ + + +V + + N+ P F
Sbjct: 3243 IDPNTGVITTQGFLDFETKQSYHLTVKAFNVPDEERCSFATVNIQLKGTNEYVPRFVSKL 3302
Query: 73 YTGYVSEAAPIGALV 87
Y +SEAAP G +V
Sbjct: 3303 YYFEISEAAPKGTIV 3317
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
GV+ T+ LD E Y L + AT+ ++ IV I LD DN P F+Q+ Y+ V
Sbjct: 743 GVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVV 802
Query: 78 SEAAPIG 84
E +G
Sbjct: 803 FENVALG 809
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 11 LKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYF 68
L P+ + L++K LD E T Y L V + K V V + D NDN P F
Sbjct: 191 LNPSGEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPKRRGYLQVNVTVQDINDNPPVF 250
Query: 69 TQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+Y V E A +G+ VL + A D D TNA
Sbjct: 251 GSSHYQAGVPEDAVVGSSVLQ-------VAAADADEGTNA 283
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 9 AILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
A L ++P G ++ +PL+ E T Y + V+A + +G V + + D NDN P F
Sbjct: 2814 ASLPFTINPSTGDIVISRPLNREDTDRYRIRVSAHD-SGWTVSTDVTIFVTDINDNAPRF 2872
Query: 69 TQLNYTGYVSEAAPIGALV 87
++ +Y E IG+ V
Sbjct: 2873 SRTSYYLDCPELTEIGSKV 2891
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGY 76
G L + LD E + L +TAT+ +G+ A+ ++ V + D NDN P F Y
Sbjct: 2314 GELGVTQSLDRETKERFVLMITATD-SGSPALTGTGTINVIVDDVNDNVPTFASKAYFTT 2372
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ E AP G V L++ A D D+ NA++
Sbjct: 2373 IPEDAPTGTDV-------LLVNASDADASKNAVI 2399
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 28 LDYEATRIYNLSVTATNMAGAKAVCS--VIVHILDRNDNTPYFTQLNYTGYVSEAAPIGA 85
LD E Y L+V AT+ S V+V +LD NDN P F Q Y ++E
Sbjct: 2112 LDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINEN----- 2166
Query: 86 LVLTNTSLPLVIRAEDKDSETN-----ALLDGSTN 115
LT T + + + A D D TN +++G+TN
Sbjct: 2167 -TLTGTDI-IQVFAADGDEGTNGQVRYGIVNGNTN 2199
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
+++P G + LD E IYNLSV A + A S++V + D NDN P T
Sbjct: 3454 SINPQTGQITVTAELDRETLPIYNLSVLAVDSGTPSATGSASLLVTLEDINDNGPMLTV- 3512
Query: 72 NYTGYVSEAAPIGALVLT 89
G V E G LV+T
Sbjct: 3513 -SEGEVMENKRPGTLVMT 3529
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYT 74
GVL K LD E+ YNL V ++ A V + +LD NDN P F T
Sbjct: 1998 GVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTFLSPKLT 2057
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
Y+ E PI +V +A D DS N+ ++
Sbjct: 2058 -YIPENTPIDTVVFK-------AQATDPDSGPNSYIE 2086
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGYV 77
G + KPLD E T Y+L+V AT+ + V I LD ND P F Y+ V
Sbjct: 2209 GAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNV 2268
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSET 106
E +G L T L +V R +D+ S +
Sbjct: 2269 PEN--LG--TLPRTILQVVARDDDRGSNS 2293
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 8 FAILKP--ALHPPYGVLLTKKPLDYEA------TRIYNLSVTATNMA---GAKAVCSVIV 56
F +++P LH G + D E+ T +++ +V AT+ K +V V
Sbjct: 1139 FEMVQPDFELHAISGEITNTHQFDRESLMRRRGTAVFSFTVIATDQGIPQPLKDQATVHV 1198
Query: 57 HILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
++ D NDN P F + Y +SE+A N + L + A D D N L+
Sbjct: 1199 YMKDINDNAPKFLKDFYQATISESA-------ANLTQVLRVSASDVDEGNNGLI 1245
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 35 IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
IYNL V+AT++ + + + I+ + + P FTQ Y + E PIG V++
Sbjct: 1596 IYNLIVSATDLGPERRKSTTELTIILQGLDGPVFTQPKYITILKEGEPIGTNVIS 1650
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 36 YNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
+ ++VTA + VHI + N +TP F+Q + + + E+ IG++V T
Sbjct: 3055 FFITVTAKDKGNPPLSSQATVHITVTEENYHTPEFSQSHMSATIPESHSIGSIVRT---- 3110
Query: 94 PLVIRAEDKDSETNALL 110
+ A D+D+ N L+
Sbjct: 3111 ---VSARDRDAAMNGLI 3124
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILDRNDNTPYFTQL 71
++P G ++T LD E Y L V ++ + + SV+V + D NDN P F
Sbjct: 2410 INPSTGQIITSALLDRETKDNYTLVVVCSDAGSPEPLSSSTSVLVTVTDVNDNPPRFQHH 2469
Query: 72 NYTGYVSEAAPIGALVL 88
Y ++ G+ V
Sbjct: 2470 PYVTHIPSPTLPGSFVF 2486
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTGY 76
G + +PLD+E + Y + + A + G S + + +LD NDN P F +
Sbjct: 2619 GQVSISQPLDFEKIQKYVVWIEARD-GGFPPFSSYEKLDITVLDVNDNAPIFKE------ 2671
Query: 77 VSEAAPIGALVLTNTS--LPLVIRAEDKDSETNALLD 111
P + +L N S L + A DKDS N LD
Sbjct: 2672 ----DPFISEILENLSPRKILTVSAMDKDSGPNGQLD 2704
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+ P G L+ + LD E Y+L V A + + + + + + D ND+TP F++ Y+
Sbjct: 1789 IDPESGDLIATRRLDRERRSKYSLLVRADDGLQSSDM-RINITVSDVNDHTPKFSRPVYS 1847
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E G+LV I A D DS N
Sbjct: 1848 FDIPEDTIPGSLV-------AAILATDDDSGVNG 1874
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV----CSVIVHILDRNDNTPYFTQLNYTG 75
G + LD E +L V A N + +V V +LD ND P FT Y+
Sbjct: 3353 GQIYVSGILDREKEERVSLKVLAKNFGSIRGADIDEVTVNVTVLDAND-PPIFTLNIYSV 3411
Query: 76 YVSEAAPIGALV 87
+SE PIG V
Sbjct: 3412 QISEGVPIGTHV 3423
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQ 70
A++ G L T +D E Y L V A +G +V+I D NDN+P+F Q
Sbjct: 840 AINQVTGQLTTANVIDREEQSFYQLKVVA---SGGTVTGDTMVNITVKDLNDNSPHFLQ 895
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA-----GAKAVCSVIVHILDRNDNTPYFTQLNYT 74
G + T +D E ++ L+V A + A A+ +V + + D NDN P F N
Sbjct: 1476 GTIYTNAEIDREFANLFELTVKANDQAVPIETRRYALKNVTILVTDLNDNVPMFISQNAL 1535
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
+A IG+++ T I A D D N ++
Sbjct: 1536 A-ADPSAVIGSVLTT-------IMAADPDEGANGEIE 1564
>sp|Q9Y5H2|PCDGB_HUMAN Protocadherin gamma-A11 OS=Homo sapiens GN=PCDHGA11 PE=2 SV=1
Length = 935
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+T + LD E + YN+++TAT+ A V +++ D NDN P F +Y+ Y
Sbjct: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDNPPVFPHSSYSAY 461
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ E P GA + + T+L D DS+ NAL+
Sbjct: 462 IPENNPRGASIFSVTAL-------DPDSKQNALV 488
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + + LD+E R Y + + + G ++++ ++D NDN P T + + E
Sbjct: 300 GEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILE 359
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+P G ++ ++ +D+DS N
Sbjct: 360 NSPPGTVI-------ALLNVQDQDSGENG 381
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
GVL + DYE R L V A + + S+ + +LD+NDN P ++ Y
Sbjct: 513 GVLYALQSFDYEQFRDLELRVIARDSGDPPLSSNVSLSLFVLDQNDNAP---EILYPALP 569
Query: 78 SEAAPIGALVLTNTSLP--LVIR--AEDKDSETNALL 110
++ + G + ++ P LV + A DKDS NA L
Sbjct: 570 TDGS-TGVELAPRSAEPGYLVTKVVAVDKDSGQNAWL 605
>sp|Q9Y5H4|PCDG1_HUMAN Protocadherin gamma-A1 OS=Homo sapiens GN=PCDHGA1 PE=2 SV=1
Length = 931
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + K+PLD+E ++Y++ V A + AG A V++ +LD NDN P T + T V E
Sbjct: 299 GEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTITSVTTAVPE 358
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
P G ++ +I D+DS N
Sbjct: 359 NFPPGTII-------ALISVHDQDSGDNG 380
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 11/95 (11%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYFTQLNYTG 75
Y L+T++ LD E YN+++TA + G A+ + + + + D NDN+P F Q +Y+
Sbjct: 401 YYRLVTERTLDRELISGYNITITAIDQ-GTPALSTETHISLLVTDINDNSPVFHQDSYSA 459
Query: 76 YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Y+ E P GA + + +RA D DS NA +
Sbjct: 460 YIPENNPRGASIFS-------VRAHDLDSNENAQI 487
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS----VIVH 57
S+P + + A P + ++ + PLD E +++L +TA++ G + V S + +
Sbjct: 174 SNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHLILTASD--GGEPVRSGTLRIYIQ 231
Query: 58 ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
++D NDN P FTQ Y V E P+G + L++ A D D N
Sbjct: 232 VVDANDNPPAFTQAQYHINVPENVPLGTQL-------LMVNATDPDEGANG 275
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTP--YFTQLNYTG 75
GVL + DYE R L V A + + S+ + +LD+NDN P + L G
Sbjct: 512 GVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNAPEILYPALPTDG 571
Query: 76 YVS-EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E AP+ A L + A D+DS NA L
Sbjct: 572 STGVELAPLSA---EPGYLVTKVVAVDRDSGQNAWL 604
>sp|Q5DRE0|PCDB1_PANTR Protocadherin beta-1 OS=Pan troglodytes GN=PCDHB1 PE=3 SV=1
Length = 818
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 17 PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
P Y L+ KPLD E NL++TA + + +H+ LD ND+ P F++L Y
Sbjct: 189 PKYAELVLNKPLDREKQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248
Query: 75 GYVSEAAPIGALVLTNTSLPL 95
VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
AILK + P G + + PLD+EA Y++ + AT+ G A V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPP 345
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPY 67
++KP Y L+T + LD E YN+++ A + ++ +L D NDN P
Sbjct: 393 VIKPTFGNSYS-LVTDRSLDREEVSGYNITLVAMDTGPPSLSAETMIEVLISDVNDNPPI 451
Query: 68 FTQLNYTGYVSE 79
F + +Y V E
Sbjct: 452 FREDSYILTVRE 463
>sp|Q5DRA3|PCDGL_PANTR Protocadherin gamma-C4 OS=Pan troglodytes GN=PCDHGC4 PE=3 SV=1
Length = 938
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
+LHP G L PLD+E+ Y V A + G+ A+ CS+ V +LD NDN PY T
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ G + E+A G +V +I +D DS +N
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
LL +KPLD E Y L +TA + + V +LD NDN P F Q +Y V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253
Query: 80 AAPIG-ALVLTNTSLP 94
+AP G L+ N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
L+T PLD EA Y++ VTA++ AG + ++ ++I D NDN P F Q ++ +V
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E G L+ + + A D DS NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
G LL K P+D EA + LS + G + V I+D ND+ P F +
Sbjct: 82 GALLIKNPIDREA--LCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLD 139
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
+ EAAP G PL +A+D D +N++
Sbjct: 140 LEIGEAAPPG------QRFPLE-KAQDADVGSNSI 167
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTP 66
+L+P G + + DYE T+ V A + +V V +LD NDN P
Sbjct: 509 SLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAP 563
>sp|Q9Y5F7|PCDGL_HUMAN Protocadherin gamma-C4 OS=Homo sapiens GN=PCDHGC4 PE=2 SV=1
Length = 938
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQ 70
+LHP G L PLD+E+ Y V A + G+ A+ CS+ V +LD NDN PY T
Sbjct: 294 SLHPTTGKLTLLGPLDFESENYYEFDVRARD-GGSPAMEQHCSLRVDLLDVNDNAPYITV 352
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ G + E+A G +V +I +D DS +N
Sbjct: 353 TSELGTLPESAEPGTVV-------ALISVQDPDSGSNG 383
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
LL +KPLD E Y L +TA + + V +LD NDN P F Q +Y V E
Sbjct: 194 LLLEKPLDREKQSDYRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLE 253
Query: 80 AAPIG-ALVLTNTSLP 94
+AP G L+ N S P
Sbjct: 254 SAPAGMVLIQLNASDP 269
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAVC---SVIVHILDRNDNTPYFTQLNYTGYVS 78
L+T PLD EA Y++ VTA++ AG + ++ ++I D NDN P F Q ++ +V
Sbjct: 407 LVTAGPLDREAKSSYDIMVTASD-AGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVP 465
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E G L+ + + A D DS NAL+
Sbjct: 466 ENNRPGDLLCS-------LAASDPDSGLNALI 490
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
G LL K P+D EA + LS + G + V I+D ND+ P F +
Sbjct: 82 GALLIKNPIDREA--LCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQLD 139
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
+ EAAP G PL +A+D D +N++
Sbjct: 140 LEIGEAAPPG------QRFPLE-KAQDADVGSNSI 167
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVH--ILDRNDNTP 66
+L+P G + + DYE T+ V A + +V V +LD NDN P
Sbjct: 509 SLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGNPPLSSTVTVRLFVLDLNDNAP 563
>sp|Q9Y5F3|PCDB1_HUMAN Protocadherin beta-1 OS=Homo sapiens GN=PCDHB1 PE=2 SV=2
Length = 818
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 17 PPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYT 74
P Y L+ KPLD E NL++TA + + +H+ LD ND+ P F++L Y
Sbjct: 189 PKYAELVLNKPLDREEQPEVNLTITAVDGGSPPKSGTAHIHVVVLDVNDHVPQFSRLVYR 248
Query: 75 GYVSEAAPIGALVLTNTSLPL 95
VSE +P G+LV T T++ L
Sbjct: 249 AQVSENSPNGSLVATVTAVDL 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 9 AILKP-ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
AILK + P G + + PLD+EA Y++ + AT+ G A V+V ++D NDN P
Sbjct: 287 AILKTFQIDPQNGEVRLRGPLDFEAIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPP 345
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPY 67
++KP Y L+T + LD E YN+++ A + ++ +L D NDN P
Sbjct: 393 VIKPTFGNSYS-LVTDRSLDREEVSGYNITIVAMDTGPPSLSAETMIEVLISDVNDNPPI 451
Query: 68 FTQLNYTGYVSE 79
F + +Y V E
Sbjct: 452 FREDSYILTVRE 463
>sp|Q9Y5H7|PCDA5_HUMAN Protocadherin alpha-5 OS=Homo sapiens GN=PCDHA5 PE=2 SV=1
Length = 936
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ LD E+ +Y L VTA + A SV V + D NDN P F Q YT +
Sbjct: 403 YYSLVLDSALDRESVSVYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVF 462
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E P G + T + A D D++ NAL+
Sbjct: 463 VKENNPPGCHIFT-------VSARDADAQENALV 489
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTGYVSE 79
L+ +K LD E T+ + L V AT+ + +V ++++LD NDN P F + Y + E
Sbjct: 193 LVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAPEFDKSIYNVRLLE 252
Query: 80 AAPIGALVL 88
AP G LV+
Sbjct: 253 NAPSGTLVI 261
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G + LDYE Y +++ A + + C V+V +LD NDNTP V
Sbjct: 299 GEIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPV 358
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E AP+ ++ +I D+DS N
Sbjct: 359 KEDAPLSTVI-------ALISVSDRDSGANG 382
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
++H G + +PLD+E + V+A + AG + S + V +LD NDN P
Sbjct: 508 SVHAESGKVYALQPLDHEEVELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLV 566
Query: 69 TQLNYT-GYVSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
++ T G VSE P +GA + +RA D DS NA L
Sbjct: 567 PRVGGTGGAVSELVPRSVGAGHVVAK-----VRAVDPDSGYNAWL 606
>sp|Q9Y5E4|PCDB5_HUMAN Protocadherin beta-5 OS=Homo sapiens GN=PCDHB5 PE=1 SV=1
Length = 795
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
+LKP L Y L+T++ LD E+ YN+++T T+M K ++ V + D NDN P
Sbjct: 391 LLKPTLKNFY-TLVTQRTLDRESQAEYNITITVTDMGTPRLKTEHNITVLVSDVNDNAPA 449
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 450 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 483
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 25 KKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIG 84
K+ LD+EAT YN+ + AT+ G C+V + ++D NDN P T + E AP
Sbjct: 303 KRALDFEATPYYNVEIVATDGGGLSGKCTVAIEVVDVNDNAPELTMSTLSSPTPENAPET 362
Query: 85 ALVLTNTSLP 94
+ + + S P
Sbjct: 363 VVAVFSVSDP 372
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYFTQLNYTG 75
Y L+ K LD E +L++TA + GA ++ + +LD NDN P F Q Y
Sbjct: 191 YPELVLDKALDREERPELSLTLTALD-GGAPPRSGTTTIRIVVLDNNDNAPEFLQSFYEV 249
Query: 76 YVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
V E +P+ +LV +V+ A D D+
Sbjct: 250 QVPENSPLNSLV-------VVVSARDLDA 271
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
G L + LDYEA + + V AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 510 GHLFALRSLDYEALQAFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 568
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T V AA G LV + A D DS NA L
Sbjct: 569 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 601
>sp|Q5DRC0|PCDGB_PANTR Protocadherin gamma-A11 OS=Pan troglodytes GN=PCDHGA11 PE=3 SV=1
Length = 935
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+T + LD E + YN+++TAT+ A + +++ D NDN P F +Y+ Y
Sbjct: 402 YYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHIWLNVADDNDNPPVFPHSSYSAY 461
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ E P GA + + T+L D DS+ NAL+
Sbjct: 462 IPENNPRGASIFSVTAL-------DPDSKQNALV 488
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + + LD+E R Y + + + G ++++ ++D NDN P T + + E
Sbjct: 300 GEVQVRGSLDFEKYRFYEMEIQGQDGGGLFTTTTMLITVVDVNDNAPEITITSSINSILE 359
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+P G ++ ++ +D+DS N
Sbjct: 360 NSPPGTVI-------ALLNVQDQDSGENG 381
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
GVL + DYE R L V A + + S+ + +LD+NDN P ++ Y
Sbjct: 513 GVLYALQSFDYEQFRDLQLRVIARDSGDPPLSSNVSLSLFVLDQNDNAP---EILYPALP 569
Query: 78 SEAAPIGALVLTNTSLP--LVIR--AEDKDSETNALL 110
++ + G + ++ P LV + A DKDS NA L
Sbjct: 570 TDGS-TGVELAPRSAEPGYLVTKVVAVDKDSGQNAWL 605
>sp|Q96TA0|PCDBI_HUMAN Putative protocadherin beta-18 OS=Homo sapiens GN=PCDHB18 PE=5 SV=1
Length = 734
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
+LKP Y L+T+ PLD E YN+++T T++ K ++ V + D NDN P
Sbjct: 339 VLKPTFKNFYA-LVTEHPLDREVRNEYNITITVTDLGTPRLKTEHNITVLVSDVNDNAPI 397
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 398 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 431
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+HP G + K PLD+E + Y +++ A S++V ++D NDN P + T
Sbjct: 240 IHPISGEVYLKAPLDFEIIQSYIINIQAIEGGSLSGKSSILVRVVDVNDNPPEIAMTSLT 299
Query: 75 GYVSE 79
+ E
Sbjct: 300 SPIPE 304
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
Y L+ + LD E ++L++TA + + ++++ LD +DN P F + Y +
Sbjct: 137 YPELVLDQSLDREKVSEFSLTLTAVDGGSPPRSGTTLINVVVLDISDNAPEFEKPVYEVH 196
Query: 77 VSEAAPIGALVL 88
V E++P+ +L++
Sbjct: 197 VPESSPLDSLII 208
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYF------TQL 71
G L + LDYEA + + V A + V+V +L D NDN+P+
Sbjct: 458 GHLFALRSLDYEALQEFGFRVGAADHGSPALSSEVLVRVLVLDANDNSPFVLYPLQNGSA 517
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T V AA G LV + A D DS NA L
Sbjct: 518 PCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 549
>sp|Q5DRD4|PCDBI_PANTR Protocadherin beta-18 OS=Pan troglodytes GN=PCDHB18 PE=3 SV=1
Length = 788
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
+LKP Y L+T+ PLD E YN+++T T++ K ++ V + D NDN P
Sbjct: 393 VLKPTFKNFYA-LVTEHPLDREVRNEYNITITVTDLGTPRLKTQHNITVLVSDVNDNAPA 451
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 452 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 485
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+HP G + K PLD+E + Y +++ A + S++V ++D NDN P + T
Sbjct: 294 IHPISGEVYLKAPLDFEIIQSYIINIQAIDGGSLSGKSSILVRVVDVNDNPPEIAMTSLT 353
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
+ E + +V V D+D+ N + GS
Sbjct: 354 SPIPENSSPEMVV-------AVFSIRDQDAGDNGRMVGS 385
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPYF------TQ 70
G L + LDYEA + + V AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 512 GHLFALRSLDYEALQAFEFHVGATDR-GSPALSSEALVRVLVLDANDNSPFVLYPLQNGS 570
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T V AA G LV + A D DS NA L
Sbjct: 571 APCTELVPRAAEPGYLVTK-------VVAVDGDSGQNAWL 603
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--LDRNDNTPYFTQLNYTGY 76
Y L+ + LD E +L++TA + + ++++ LD NDN P F + Y +
Sbjct: 191 YPELVLDQSLDREKESQLSLTLTAVDGGSPPRSGTTLINVVVLDINDNAPEFEKPVYEVH 250
Query: 77 VSEAAPIGALVL 88
V E++P+ +L++
Sbjct: 251 VPESSPLDSLII 262
>sp|Q9Y5F2|PCDBB_HUMAN Protocadherin beta-11 OS=Homo sapiens GN=PCDHB11 PE=2 SV=1
Length = 797
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 18/113 (15%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHIL 59
S P L +LK ++ Y L T++PLD E+T YN+++T T++ K + V +
Sbjct: 384 SIPEDLPFVLKSSVENYY-TLETERPLDRESTAEYNITITVTDLGIPRLKTEHNTTVLVS 442
Query: 60 DRNDNTPYFTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
D NDN P FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 443 DVNDNAPTFTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + + PLD+E Y++ + AT+ G +VI+H++D NDN P T + T + E
Sbjct: 299 GEITLRAPLDFETIESYSIIIQATDGGGLFGKSTVIIHVIDVNDNAPEITVSSITSPIPE 358
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
P ++ +V +D DS N
Sbjct: 359 NTP--------ETVVMVFSIQDIDSGDNG 379
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTPYFTQLNYT 74
Y L+ K LDYE + LS + + G V V ++D NDN+P F Q Y
Sbjct: 191 YPELVLDKALDYE--ELPELSFILSALDGGSPPRSGTALVRVVVVDINDNSPEFEQAFYE 248
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ E + +G+L+ L++ A D DS TN
Sbjct: 249 VKIRENSILGSLI-------LIVSAWDLDSGTNG 275
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
G L + LDYEA + ++ V AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFDFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560
>sp|Q5DRB6|PCDG4_PANTR Protocadherin gamma-A4 OS=Pan troglodytes GN=PCDHGA4 PE=3 SV=1
Length = 931
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y LLT + LD E YN++VTAT+ + + ++D NDN P F +Y+ Y
Sbjct: 401 YYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAY 460
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E P GA +L+ T A+D DS NA +
Sbjct: 461 VPENNPRGASILSMT-------AQDPDSGDNARI 487
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 28 LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
LDYE + Y++ V A + G +A V+V +LD NDN P T + T V E + G ++
Sbjct: 307 LDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQETSSPGTVI 366
Query: 88 LTNTSLPLVIRAEDKDSETNALL 110
+ D DS N L+
Sbjct: 367 -------ALFNVHDSDSGGNGLV 382
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ ++ LD E +++L +TA + +++ ++D NDN P FTQ Y
Sbjct: 191 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVS 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E P+G L+LT ++A D D N
Sbjct: 251 VHENVPVGTLLLT-------VKATDPDEGANG 275
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY-----FTQLN 72
G+L + DYE R L VTA++ + S+ + +LD+NDN P F +
Sbjct: 512 GILYALRSFDYEQFRDLQLLVTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDD 571
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
TG E AP A + L + A D+DS NA L
Sbjct: 572 STGV--ELAPRSA---DSGYLVTKVVAVDRDSGQNAWL 604
>sp|Q9Y5E1|PCDB9_HUMAN Protocadherin beta-9 OS=Homo sapiens GN=PCDHB9 PE=2 SV=2
Length = 797
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPY 67
LKP++ Y +L+T+ LD E+ YN+++T T++ K S+ + + D NDN P
Sbjct: 392 FLKPSVDNFY-ILMTEGALDRESKAEYNITITVTDLGTPRLKTEHSITLQVSDVNDNAPA 450
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
++P G + ++ LDYE Y +++ A + G A C+V++ +LD NDN P + +
Sbjct: 294 INPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIISSLS 353
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V+E +P +VL V + +D+DS N
Sbjct: 354 NSVAENSP--GIVLA------VFKIKDRDSGENG 379
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ K LD E +L++TA + ++ + +LD NDN P F Q Y
Sbjct: 191 YPELVLDKALDREEQEELSLTLTALDGGSPSRSGTSTIRIVVLDVNDNAPQFAQALYETQ 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
E +P+G+L++ + A D DS NA
Sbjct: 251 APENSPVGSLIVK-------VSAGDADSGVNA 275
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
G L + LDYEA + ++ V A++ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQAFDFRVGASDR-GSPALSSEALVRVLVLDANDNSPF 560
>sp|Q5DRE5|PCDA7_PANTR Protocadherin alpha-7 OS=Pan troglodytes GN=PCDHA7 PE=3 SV=1
Length = 937
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ + LD E+ Y L VTA + A SV V + D NDN P F Q YT +
Sbjct: 404 YYSLVLDRALDRESVSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVF 463
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E P G + T + A D D++ NAL+
Sbjct: 464 VKENNPPGCHIFT-------VSAGDADAQKNALV 490
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 18 PYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSV--IVHILDRNDNTPYFTQLNYTG 75
P G++L +K LD E T +L +TAT+ + +V ++ +LD NDN P F + YT
Sbjct: 191 PLGLVL-RKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTV 249
Query: 76 YVSEAAPIGALVL 88
+ E IG LV+
Sbjct: 250 KLPENVSIGTLVI 262
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATN-----MAGAKAVCSVIVHILDRNDNTPYFT 69
+ P G + +D+E +R + + V A + +AG C+V+V ++D NDN P T
Sbjct: 295 MDPLSGAITVIGHMDFEESRAHKIPVEAVDKGFPPLAGH---CTVLVEVVDVNDNAPQLT 351
Query: 70 QLNYTGYVSEAAPIGALV 87
+ + + E A G ++
Sbjct: 352 LTSLSLPIPEDAQPGTVI 369
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 14/105 (13%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVI---VHILDRNDNTPYF-- 68
++H G + +PLD+E + V+A + AG + S + V +LD NDN P
Sbjct: 509 SVHAESGKVYVLQPLDHEELELLQFQVSARD-AGVPPLGSNVTLQVFVLDENDNAPALLA 567
Query: 69 TQLNYT-GYVSEAAP--IGALVLTNTSLPLVIRAEDKDSETNALL 110
++ T G V E P +GA + +RA D DS NA L
Sbjct: 568 PRVGGTGGAVRELVPRSVGAGHVVAK-----VRAVDADSGYNAWL 607
>sp|Q5DRA2|PCDGM_PANTR Protocadherin gamma-C5 OS=Pan troglodytes GN=PCDHGC5 PE=3 SV=1
Length = 944
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
LLT +PLD EAT Y + + A++ AG+ ++ ++ ++I D NDN P F Q YT Y+
Sbjct: 406 LLTSQPLDREATSHYIIELLASD-AGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYIL 464
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E P G+L+ T + A D D+ NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNARL 489
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 18 PYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTG 75
P+ L+ ++ LD EA + L +TA + A++ ++I V +LD NDN P F
Sbjct: 190 PFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRV 249
Query: 76 YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
+ E APIG L+L + A D D TN LD
Sbjct: 250 GIPENAPIGTLLLR-------LNATDPDEGTNGQLD 278
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
L P G + P+D+E +R Y + A + + C + V + D NDN P
Sbjct: 294 GLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVEVGDVNDNAPEVLLA 353
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ V E+ P+G +V + D+DS N
Sbjct: 354 SLANPVLESTPVGTVV-------GLFNVRDRDSGRNG 383
>sp|Q9Y5F6|PCDGM_HUMAN Protocadherin gamma-C5 OS=Homo sapiens GN=PCDHGC5 PE=2 SV=1
Length = 944
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGYVS 78
LLT +PLD EAT Y + + A++ AG+ ++ ++ ++I D NDN P F Q YT Y+
Sbjct: 406 LLTSQPLDREATSHYIIELLASD-AGSPSLHKHLTIRLNISDVNDNAPRFNQQLYTAYIL 464
Query: 79 EAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E P G+L+ T + A D D+ NA L
Sbjct: 465 ENRPPGSLLCT-------VAASDPDTGDNARL 489
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 18 PYGVLLTKKPLDYEATRIYNLSVTATNMAG-AKAVCSVI-VHILDRNDNTPYFTQLNYTG 75
P+ L+ ++ LD EA + L +TA + A++ ++I V +LD NDN P F
Sbjct: 190 PFPELVLEQQLDREAQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRV 249
Query: 76 YVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
+ E APIG L+L + A D D TN LD
Sbjct: 250 GIPENAPIGTLLLR-------LNATDPDEGTNGQLD 278
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQL 71
L P G + P+D+E +R Y + A + + C + V + D NDN P
Sbjct: 294 GLDPSSGAIHVLGPIDFEESRFYEIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLA 353
Query: 72 NYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ V E+ P+G +V + D+DS N
Sbjct: 354 SLANPVLESTPVGTVV-------GLFNVRDRDSGRNG 383
>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan OS=Drosophila
melanogaster GN=stan PE=1 SV=4
Length = 3579
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAK-----AVCSVIVHILDRNDNTPYFTQLNYT 74
GV+ T+ LD E + Y+L VTA ++A A+ A SV V +LD NDN P F++ YT
Sbjct: 528 GVISTRSSLDRETSDSYHLLVTAADLASAQSERRTATASVQVKVLDDNDNYPQFSERTYT 587
Query: 75 GYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E G T + IRA D D NA +
Sbjct: 588 VQVPEDQWGG----TEDNTVAHIRATDADQGNNAAI 619
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G++ + LDY+ + + L+V AT+ G +V ++I D N+ P F Y+ V E
Sbjct: 849 GLITIAQSLDYKQEKRFLLTVAATDSGGRSDTATVHINITDANNFAPIFENAPYSASVFE 908
Query: 80 AAPIGALVLTNTSLPLVIRAEDKDSETNALLDGSTN 115
AP+G V LV+ A D D NA + S N
Sbjct: 909 DAPVGTTV-------LVVSATDSDVGVNAQITYSLN 937
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 15 LHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHIL--DRNDNTPYFTQLN 72
+ P G + T K LD E+ +++L+ A + +V V I D ND+ P F
Sbjct: 1058 IDPTSGTIRTNKGLDRESVAVFHLTAIAVDKGSPPLSSTVEVQIRLEDVNDSPPTFASDK 1117
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
T YV E +P+G++V I A D D NA++
Sbjct: 1118 ITLYVPENSPVGSVVGE-------IHAHDPDEGVNAVV 1148
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 26 KPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPI 83
KPLDYE+ R Y L + A + ++V+++D NDN P F + V E P+
Sbjct: 645 KPLDYESVRSYRLVIRAQDGGSPSRSNTTQLLVNVIDANDNAPRFYTSQFQESVLENVPV 704
Query: 84 GALVLTNTSLPLVIRAEDKDSETNA 108
G ++ ++A D D NA
Sbjct: 705 GYNIIR-------VQAYDSDEGANA 722
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
GV+ T LD E ++ V AT+ ++ V++LD ND++P F + +
Sbjct: 414 GVVTTSASLDRELMDVHYFRVVATDDSFPPRSGTTTLQVNVLDCNDHSPTFEAEQFEASI 473
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALLD 111
E A +G+ V+T +RA D+D NA ++
Sbjct: 474 REGATVGSTVIT-------LRATDQDIGKNAEIE 500
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA--VCSVIVHILDRNDNTPYFTQL 71
+++P G ++T PLD E T Y L+VTA + V + + D NDN P F
Sbjct: 951 SINPQTGAIVTNAPLDRETTSGYLLTVTAKDGGNPSLSDTTDVEIGVTDVNDNAPAFKSP 1010
Query: 72 NYTGYVSEAAPIGALVL 88
Y + E A +G V+
Sbjct: 1011 LYQASILEDALVGTSVI 1027
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATN--MAGAKAVCSVIVHILDRNDNTPYFTQL 71
A+ P G + T KPLD E + V A + + A SV++ + D NDN P F
Sbjct: 738 AVDPRTGWVQTIKPLDREEQGRFAFQVVAKDGGVPPKSASSSVVITVQDVNDNDPAFNPK 797
Query: 72 NYTGYVSEAAPIGALVLTNTS 92
Y V E P G V T T+
Sbjct: 798 YYEANVGEDQPPGTPVTTVTA 818
>sp|Q5DRC3|PCDBH_PANTR Protocadherin beta-17 OS=Pan troglodytes GN=PCDHB17 PE=3 SV=1
Length = 795
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 10 ILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPY 67
+LKP L Y LLT+ LD E+ YN+++T T++ K ++ V + D NDN P
Sbjct: 392 LLKPTLENFY-TLLTEGALDRESRAEYNITITVTDLGTPRLKTEYNITVLVSDVNDNAPA 450
Query: 68 FTQLNYTGYVSE----AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
FTQ +YT +V E A IG+ + A D+DS TNA
Sbjct: 451 FTQTSYTLFVRENNSPALHIGS-----------VSATDRDSGTNA 484
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFT 69
G + KK LD+E + Y++ V A++ G C+V + ++D NDN P T
Sbjct: 299 GEIRLKKALDFEEIQSYHMEVEASDGGGLSGKCTVAIEVMDINDNAPELT 348
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ + LD E L++TA + + V++ I+D NDN P F Q Y
Sbjct: 191 YPELVLDQALDREEQPQLRLTLTALDGGSPPRIGTSQVLIVIVDINDNVPEFAQRRYEVQ 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
V E PIG+LV+T + A D D+ T+ L
Sbjct: 251 VPENTPIGSLVIT-------VSARDLDAGTHGEL 277
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS---VIVHILDRNDNTPY 67
G L + LDYEA + + V AT+ G+ A+ S V V +LD NDN+P+
Sbjct: 511 GHLFALRSLDYEALQEFEFRVGATDR-GSPALSSEALVRVLVLDANDNSPF 560
>sp|Q9Y5G9|PCDG4_HUMAN Protocadherin gamma-A4 OS=Homo sapiens GN=PCDHGA4 PE=2 SV=1
Length = 931
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y LLT + LD E YN++VTAT+ + + ++D NDN P F +Y+ Y
Sbjct: 401 YYRLLTHRTLDREEVSEYNITVTATDQGTPPLSTETHISLQVMDINDNPPTFPHASYSAY 460
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ E P GA +L+ T A+D DS NA +
Sbjct: 461 IPENNPRGASILSMT-------AQDPDSGDNARI 487
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 28 LDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALV 87
LDYE + Y++ V A + G +A V+V +LD NDN P T + T V E++ G ++
Sbjct: 307 LDYEDSGFYDIDVEAHDGPGLRARSKVLVTVLDENDNAPEVTVTSLTSSVQESSSPGTVI 366
Query: 88 LTNTSLPLVIRAEDKDSETNALL 110
+ D DS N L+
Sbjct: 367 -------ALFNVHDSDSGGNGLV 382
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
Y L+ ++ LD E +++L +TA + +++ ++D NDN P FTQ Y
Sbjct: 191 YPELVLERALDREEEAVHHLVLTAFDGGDPVRSGTARILIILVDTNDNAPVFTQPEYHVS 250
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E P+G +LT ++A D D N
Sbjct: 251 VRENVPVGTRLLT-------VKATDPDEGANG 275
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGYV 77
G+L DYE R L +TA++ + S+ + +LD+NDN P +
Sbjct: 512 GILYALCSFDYEQFRDLQLLMTASDSGDPPLSSNVSLSLFVLDQNDNVPEILYPTFPTDG 571
Query: 78 SEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
S + + L + A D+DS NA L
Sbjct: 572 STGVELAPRSADSGYLVTKVVAVDRDSGQNAWL 604
>sp|Q90275|CADH2_DANRE Cadherin-2 OS=Danio rerio GN=cdh2 PE=2 SV=2
Length = 893
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV--CSVIVHIL 59
+P LF I P G+L KPLD E ++L A ++ G + +I++++
Sbjct: 191 QNPTGLFII-----DPISGLLSVTKPLDREHIPNFHLRAHAVDINGNQMENPIDIIINVI 245
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
D NDN P FT + G V E A G V+T TS +DKD A
Sbjct: 246 DMNDNRPEFTHQIWNGTVDEGAKPGTFVMTVTS-------QDKDDPNTA 287
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 28 LDYEATRIYNLSVTATNMAGAKA-----VCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
LD E Y L + AT+M G + ++ +LD NDN P FT+ + G V E
Sbjct: 324 LDREKVPQYTLIIQATDMEGNPTYGLSNTATAVIRLLDVNDNAPEFTRETFHGEVPE 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,929,594
Number of Sequences: 539616
Number of extensions: 1453167
Number of successful extensions: 5187
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3242
Number of HSP's gapped (non-prelim): 1622
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)