RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7564
(115 letters)
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 91.1 bits (227), Expect = 2e-24
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
A+ P GV+ ++PLD E + + + ++ V + + D NDN P F Y
Sbjct: 56 AVEPDTGVVWLRQPLDRETKSEFTVEFSVSDH-QGVITRKVNIQVGDVNDNAPTFHNQPY 114
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ + E P+G + + A D D
Sbjct: 115 SVRIPENTPVGTPIFI-------VNATDPDLGAGG 142
Score = 56.1 bits (136), Expect = 5e-11
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDN 64
A+ G++ + LDYE T+ Y L+V AT+ + ++ + I D D
Sbjct: 156 AIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 39.9 bits (94), Expect = 4e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 62 NDNTPYFTQLNYTGY--VSEAAPIGALVLTNTSLPLVIRAEDKDS 104
+ P+FT + Y +SE P+G+ V + A D D+
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQ-------LLARDMDN 39
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 87.7 bits (218), Expect = 2e-22
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 15 LHPPYGVLLTKKP-LDYEATRIYNLSVTATNMAGA----KAVCSVIVHILDRNDNTPYFT 69
+ P ++ T P +D EA Y + + A +M G ++ V + D NDN P F
Sbjct: 157 IEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFA 216
Query: 70 QLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
Q Y V E +G + ++A D+D NA
Sbjct: 217 QSLYHFSVPEDVVLGTAIGR-------VKANDQDIGENAQS 250
Score = 82.7 bits (205), Expect = 2e-20
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRN 62
+F I + G + K LD E Y L+ A + K + I+ + D N
Sbjct: 46 TIFQI-----NDITGDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDIN 100
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
DN P F Y V E + +G V + A D D
Sbjct: 101 DNAPEFLNGPYHATVPEMSILGTSVTN-------VTATDADDPVY 138
Score = 40.4 bits (95), Expect = 3e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMA 46
GV+ +KPLD+E + Y L V A N+
Sbjct: 274 GVIRLRKPLDFETKKSYTLKVEAANIH 300
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 84.7 bits (210), Expect = 6e-22
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDR 61
P F I + G + + LD E Y L V T+ +G + V ++D+
Sbjct: 47 PKGTFRI-----NENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET--NALL 110
NDN P F + Y G+V E +P G V+ + A D D NALL
Sbjct: 102 NDNRPIFREGPYIGHVMEGSPTGTTVMR-------MTAFDADDPATDNALL 145
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 84.3 bits (209), Expect = 7e-22
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRNDNTPYFTQLNYTGY 76
G + + LD E Y L+ + +++ I+ + D NDN P F Q + G
Sbjct: 53 GDIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGS 112
Query: 77 VSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
V E + +G V + AED D T
Sbjct: 113 VPEMSRLGTSVTK-------VTAEDADDPTV 136
Score = 45.8 bits (109), Expect = 3e-07
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK---AVCSVIVHILD 60
+ F + + + LD E+ Y + V A + G + +VI+ + D
Sbjct: 151 EYFTV-----DDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 87.8 bits (218), Expect = 9e-22
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMA--------GAKAVCSVIVHILDRNDNTPYFTQ 70
G++ KP+D+E R++ L+V A N ++ +V V ++D N+N PYF
Sbjct: 282 DGLVTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAP 340
Query: 71 LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
E G ++ T + A+D D +
Sbjct: 341 NPKIIRQEEGLHAGTMLTT-------LTAQDPDRYMQQNI 373
Score = 81.2 bits (201), Expect = 2e-19
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 6 QLFAILKPALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHIL 59
+F I + G ++T LD E + Y L + AT+M G + ++ +
Sbjct: 160 NMFTI-----NNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
D NDN P FT + + G V E +V + DKD
Sbjct: 215 DVNDNPPEFTAMTFYGEVPENRV-DVIVAN-------LTVTDKDQPHTP 255
Score = 77.0 bits (190), Expect = 5e-18
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHI--L 59
P +F I +P G L KPLD E ++L A ++ G + + + I +
Sbjct: 45 QPPTGIFII-----NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVI 99
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET--NALL 110
D NDN P F + G V E + G V+T + A D D N +L
Sbjct: 100 DMNDNRPEFLHQVWNGSVPEGSKPGTYVMT-------VTAIDADDPNALNGML 145
Score = 63.5 bits (155), Expect = 3e-13
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 22/111 (19%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRI----YNLSVTAT--NMAGAKAVCSVIVH 57
P I P G + T LD E+ + YN + A+ + ++ ++
Sbjct: 381 PANWLKI-----DPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIY 435
Query: 58 ILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+LD NDN P E + I A D D + NA
Sbjct: 436 LLDINDNAPQVLP--QEAETCETPEPN---------SINITALDYDIDPNA 475
Score = 44.3 bits (105), Expect = 2e-06
Identities = 5/55 (9%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 24 TKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRNDNTPYFTQLNYTGY 76
+ + IY + + T+ + + V + + N ++ +
Sbjct: 505 LNLKIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHHH 559
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 87.4 bits (217), Expect = 1e-21
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNY 73
G+L T K LD+EA + Y L V N + +V V ++D N+ P F
Sbjct: 279 DGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAER 337
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
V E +G + + A + D+ +
Sbjct: 338 RVEVPEDFGVGQEITS-------YTAREPDTFMDQ 365
Score = 79.7 bits (197), Expect = 7e-19
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 6 QLFAILKPALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
+F + + GV+ LD E+ Y L V A ++ G ++ + D N
Sbjct: 161 NMFTV-----NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDIN 215
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
DN P F Y G V E A + T ++ D D+
Sbjct: 216 DNAPVFNPSTYQGQVPENEV-NARIAT-------LKVTDDDAPNTP 253
Score = 77.0 bits (190), Expect = 5e-18
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHIL 59
PV +F I G L +PLD EA Y L A + G +++ +
Sbjct: 45 KPPVGVFII-----ERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVT 99
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
D+NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 100 DQNDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVNTY 142
Score = 62.7 bits (153), Expect = 6e-13
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 19/96 (19%)
Query: 20 GVLLTKKPLDYEATR-----IYNLSVTATNMAGAKAVC--SVIVHILDRNDNTPYFTQLN 72
G + T+ +D E Y + AT+ A ++++ +LD NDN P N
Sbjct: 386 GAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRN 445
Query: 73 YTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
P +I D D N
Sbjct: 446 MQFCQRNPQPH------------IITILDPDLPPNT 469
Score = 42.7 bits (101), Expect = 5e-06
Identities = 7/57 (12%), Positives = 18/57 (31%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGY 76
L +P Y + + + V ++ VH+ D + ++ +
Sbjct: 493 QESLILQPRKDLEIGEYKIHLKLADNQNKDQVTTLDVHVCDCEGTVNNCMKAHHHHH 549
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 83.9 bits (208), Expect = 1e-21
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG--AKAVCSVIVHILDR 61
PV +F I G L +PLD EA Y L A + G + +++ + D+
Sbjct: 47 PVGVFII-----ERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQ 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
NDN P FTQ + G V+E A G V+ + A D D + N
Sbjct: 102 NDNRPEFTQEVFEGSVAEGAVPGTSVMK-------VSATDADDDVN 140
Score = 38.9 bits (91), Expect = 8e-05
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 6 QLFAILKPALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILD 60
+F + + GV+ LD E+ Y L V A ++ G ++ + D
Sbjct: 161 NMFTV-----NRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 84.0 bits (208), Expect = 1e-21
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDR 61
P +F I +P G L KPLD E ++L A ++ G + ++++++D
Sbjct: 47 PTGIFII-----NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDM 101
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSET--NALL 110
NDN P F + G V E + G V+T + A D D N +L
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMT-------VTAIDADDPNALNGML 145
Score = 40.0 bits (94), Expect = 4e-05
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 6 QLFAILKPALHPPYGVLLT-KKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHIL 59
+F I + G ++T LD E + Y L + AT+M G + ++ +
Sbjct: 160 NMFTI-----NNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214
Query: 60 D 60
D
Sbjct: 215 D 215
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 87.0 bits (216), Expect = 2e-21
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNY 73
G+L T K LD+E + Y L +T N + +V V + D N+ P+F
Sbjct: 285 QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVS 343
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
VSE G +++ + A+D D +
Sbjct: 344 RVDVSEDLSRGEKIIS-------LVAQDPDKQQIQ 371
Score = 77.0 bits (190), Expect = 5e-18
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 6 QLFAILKPALHPPYGVL-LTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
LF I + GV+ L LD E Y L+V AT++ GA I+ I D N
Sbjct: 167 NLFTI-----NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 221
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
DN P F YT V E G V + D D
Sbjct: 222 DNAPIFDPKTYTALVPENEI-GFEVQR-------LSVTDLDMPGTP 259
Score = 76.2 bits (188), Expect = 1e-17
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 14/110 (12%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHIL 59
+ P +F I G +L +PLD E Y LS A + G+ + ++++
Sbjct: 51 NPPQGVFRI-----EWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVI 105
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNAL 109
D+NDN P FTQ + G V E G V+ + A D+D ++L
Sbjct: 106 DQNDNRPKFTQDVFRGSVREGVQPGTQVMA-------VSATDEDDNIDSL 148
Score = 65.0 bits (159), Expect = 9e-14
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 20 GVLLTKKPLDYEA----TRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNY 73
G++ LD E+ Y + + T+ ++I+H+LD NDN P + +
Sbjct: 392 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 451
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
T P V+ D D N
Sbjct: 452 TMCDQNPE------------PQVLTISDADIPPNT 474
Score = 29.6 bits (67), Expect = 0.22
Identities = 5/49 (10%), Positives = 12/49 (24%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
G + P Y++ V ++ + V +
Sbjct: 497 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKC 545
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 86.5 bits (214), Expect = 2e-21
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 19 YGVLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILDRNDNTPYFTQLNY 73
G+L T K LD+E + Y L +T N + +V V + D N+ P+F
Sbjct: 434 QGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVS 492
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
VSE G +++ + A+D D +
Sbjct: 493 RVDVSEDLSRGEKIIS-------LVAQDPDKQQIQ 520
Score = 78.4 bits (193), Expect = 2e-18
Identities = 32/106 (30%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 6 QLFAILKPALHPPYGVL-LTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILDRN 62
LF I + GV+ L LD E Y L+V AT++ GA I+ I D N
Sbjct: 316 NLFTI-----NRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDAN 370
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
DN P F YT V E G V + D D
Sbjct: 371 DNAPIFDPKTYTALVPENEI-GFEVQR-------LSVTDLDMPGTP 408
Score = 78.0 bits (192), Expect = 2e-18
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCS--VIVHIL 59
+ P +F I G +L +PLD E Y LS A + G+ + ++++
Sbjct: 200 NPPQGVFRI-----EWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVI 254
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
D+NDN P FTQ + G V E G V+ + A D+D +
Sbjct: 255 DQNDNRPKFTQDVFRGSVREGVQPGTQVMA-------VSATDEDDNID 295
Score = 64.5 bits (157), Expect = 1e-13
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 20 GVLLTKKPLDYEA----TRIYNLSVTATNMA--GAKAVCSVIVHILDRNDNTPYFTQLNY 73
G++ LD E+ Y + + T+ ++I+H+LD NDN P + +
Sbjct: 541 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 600
Query: 74 TGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
T P V+ D D N
Sbjct: 601 TMCDQNPEPQ------------VLTISDADIPPNT 623
Score = 50.6 bits (121), Expect = 8e-09
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 50 AVCSVIVHILDRNDNTPYFTQLNYTGYVSE-AAPIGALVLTNTSLPLVIRAEDKDSETNA 108
+ V D + P F+ Y V+ G + + D + +
Sbjct: 19 LLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGK-------VNFSDCTTRKHG 71
Query: 109 L 109
L
Sbjct: 72 L 72
Score = 37.6 bits (87), Expect = 4e-04
Identities = 6/78 (7%), Positives = 20/78 (25%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSE 79
G + P Y++ V ++ + V + + G+
Sbjct: 646 GTSMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAIKCQEKLVGGFDLP 705
Query: 80 AAPIGALVLTNTSLPLVI 97
+ + + ++
Sbjct: 706 IILVILGSVLALLILFLL 723
Score = 32.5 bits (74), Expect = 0.017
Identities = 10/109 (9%), Positives = 24/109 (22%), Gaps = 19/109 (17%)
Query: 18 PYGVLLTKKPLDYEATRIYNLSVTATNMAGAK----------------AVCSVIVHILDR 61
P G +L K+ + + +S S + +L
Sbjct: 84 PDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTF 143
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+ + + PI P + + + +
Sbjct: 144 PETHTGLKRKKRDWVIP---PIKVSENERGPFPKRLVQIKSNKDRFNKV 189
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 82.0 bits (203), Expect = 6e-21
Identities = 33/105 (31%), Positives = 42/105 (40%), Gaps = 15/105 (14%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRN 62
LF I + G + K LD E +Y L A N + V I+ I D N
Sbjct: 46 DLFII-----NENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDIN 100
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
DN P FT+ YT V E A +G V+ + A D D T
Sbjct: 101 DNEPIFTKDVYTATVPEMADVGTFVVQ-------VTATDADDPTY 138
Score = 40.7 bits (96), Expect = 2e-05
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 6 QLFAILKPALHPPYGVLLTK-KPLDYEATRIYNLSVTATNMAGAK----AVCSVIVHILD 60
F++ G++ T +D E Y + + A +M G +V + + D
Sbjct: 153 PYFSV-----ESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 81.6 bits (202), Expect = 1e-20
Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILDRN 62
+F I G + K LD E Y L A + + + IV + D N
Sbjct: 47 TIFVI-----DDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDIN 101
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
DN P F Y V E + +G V+ + A D D T
Sbjct: 102 DNPPEFLHEIYHANVPERSNVGTSVIQ-------VTASDADDPTY 139
Score = 52.3 bits (126), Expect = 1e-09
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 6 QLFAILKPALHPPYGVLLTKKP-LDYEATRIYNLSVTATNMAGAK----AVCSVIVHILD 60
F++ G++ T P +D EA Y++ + A +M G V + + D
Sbjct: 154 PYFSV-----EAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208
Query: 61 RNDNTP 66
+
Sbjct: 209 DYKDDD 214
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 81.6 bits (202), Expect = 9e-20
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 14 ALHPPYGVLLTKKPLDYEATR---IYNLSVTATNMAGA-KAVCSVIVHILDRNDNTPYFT 69
+ P G++ K LD+E R +Y+L VTAT +G + + + D NDN P F
Sbjct: 266 NIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFE 325
Query: 70 QLNYTGY-VSEAAPIGALVLTNTSLPLVIRAEDKDSETNALL 110
+Y + V E P+G +L ++A D DS +NA +
Sbjct: 326 LPDYQAHNVDEDIPLGTSILR-------VKAMDSDSGSNAEI 360
Score = 74.3 bits (183), Expect = 4e-17
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 19/105 (18%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG------AKAVCSVIVHIL 59
F + GV+ T+ ++ Y L V A + G ++ + I+
Sbjct: 157 GRFEV-----DERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV 211
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
P F +Y + E + +++ I+A+
Sbjct: 212 G-GKRAPQFYMPSYEAEIPENQKKDSDIIS-------IKAKSFAD 248
Score = 68.9 bits (169), Expect = 3e-15
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 21/104 (20%)
Query: 17 PPYGVLLTKKPLDYE------ATRIYNLSVTATNMAGAK----AVCSVIVHILDRNDNTP 66
G + KK DYE + + + A VI+ + D ND P
Sbjct: 52 ETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGH--NAGIKYTDNQRVIILVKDVNDEPP 109
Query: 67 YFTQ--LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
YF L V AP V T ++A D D++ N
Sbjct: 110 YFINRPLPMQAVVQLNAPPNTPVFT-------LQARDPDTDHNI 146
Score = 33.4 bits (77), Expect = 0.010
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 20 GVLLTKKPLDYEATR-IYNLSVTATNMAGAKAVCS---VIVHILDR 61
G+++ K LD + Y VTA + G V V+ ++
Sbjct: 375 GIIVNNKQLDADNNNAYYEFIVTAKD-KGEPPKSGVATVRVYTKNK 419
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 79.7 bits (197), Expect = 2e-19
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAG------AKAVCSVIVHILDRNDNTPY 67
+ GV+ T+ ++ Y L V A + G ++ + I+ P
Sbjct: 155 EVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQ 213
Query: 68 FTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDS 104
F +Y + E + +++ I+A+
Sbjct: 214 FYMPSYEAEIPENQKKDSDIIS-------IKAKSFAD 243
Score = 72.8 bits (179), Expect = 1e-16
Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 17/105 (16%)
Query: 14 ALHPPYGVLLTKKPLDYEA------TRIYNLSVTAT--NMAGAKAVCSVIVHILDRNDNT 65
G + KK DYE + + VI+ + D ND
Sbjct: 44 VTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEP 103
Query: 66 PYFTQ--LNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
PYF L V AP V T ++A D D++ N
Sbjct: 104 PYFINRPLPMQAVVQLNAPPNTPVFT-------LQARDPDTDHNI 141
Score = 51.2 bits (123), Expect = 5e-09
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATR---IYNLSVTATNMAGAK-AVCSVIVHIL 59
F I P G++ K LD+E R +Y+L VTAT +G + + +
Sbjct: 256 GAGTFNI-----GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVT 310
Query: 60 DRNDN 64
D NDN
Sbjct: 311 DVNDN 315
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 60.8 bits (148), Expect = 2e-13
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
P +F + G L LD E T + L+ A + G + + +L
Sbjct: 57 EPPFGIFVF-----NKDTGELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVL 111
Query: 60 DRNDNTPYFTQ 70
D NDN P FTQ
Sbjct: 112 DINDNEPVFTQ 122
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 63.0 bits (153), Expect = 2e-13
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA---KAVCSVIVHILDRNDNTPYF 68
P + T+ LD E Y L T AGA + V + D +D+ P F
Sbjct: 187 RSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244
Score = 60.3 bits (146), Expect = 2e-12
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 33/123 (26%)
Query: 14 ALHPPYGVLLTKKPLDYEATRIYN----------------LSVTATNMAGAKAVCSVIVH 57
+ G+L ++ LD+ + + LS T+ + V+
Sbjct: 59 RIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVY 118
Query: 58 ILDRNDNTP----------YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETN 107
N + P F + + + E P G +
Sbjct: 119 FSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQF-------RLLPVQFLCPQ 171
Query: 108 ALL 110
+
Sbjct: 172 ISV 174
Score = 32.2 bits (73), Expect = 0.022
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 67 YFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
YF++ Y + G +L + A E
Sbjct: 2 YFSRDAYWEKLYVDQAAGTPLLY-------VHALRDAPEEVP 36
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 56.5 bits (137), Expect = 6e-12
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
P +F I +P G L KPLD E ++L A ++ G + ++++++
Sbjct: 47 QPPTGIFII-----NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVI 101
Query: 60 DRNDNTPYF 68
D NDN P F
Sbjct: 102 DMNDNRPEF 110
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 54.0 bits (131), Expect = 8e-11
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILDRND 63
+L + G L +D E +V A + +V+++I D ND
Sbjct: 62 RLLRL-----DETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDEND 116
Query: 64 NTP 66
N P
Sbjct: 117 NVP 119
Score = 49.4 bits (119), Expect = 5e-09
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 56 VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
NDN+P F + Y ++E + G +L +RA D D N
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQ-------LRAADLDVGVNG 47
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 49.0 bits (118), Expect = 4e-09
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 6 QLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRN 62
+LFA+ + G++ ++ LD E T I+ ++V A++ + A +V +++ D N
Sbjct: 63 RLFAL-----NNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVN 114
Score = 46.7 bits (112), Expect = 4e-08
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 56 VHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNA 108
NDN P F + ++ E AP+G V+ + A D D +NA
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQ-------LHATDADIGSNA 47
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 42.4 bits (100), Expect = 2e-06
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILD 60
G + + LD E Y L A + + + I+ I D
Sbjct: 56 GDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 40.4 bits (95), Expect = 7e-06
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
P +F I + G + K LD EA Y L V T+ G + + ++
Sbjct: 44 QEPKGIFKI-----NENSGEVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVI 98
Query: 60 D 60
D
Sbjct: 99 D 99
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 40.1 bits (94), Expect = 1e-05
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
+ PV +F I G L +PLD E Y L A + G +++ +
Sbjct: 49 TPPVGVFII-----ERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVT 103
Query: 60 D 60
D
Sbjct: 104 D 104
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus}
PDB: 2a4c_A
Length = 98
Score = 40.1 bits (94), Expect = 1e-05
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAV---CSVIVHILD 60
G + K LD E Y L+ A + K + I+ + D
Sbjct: 55 GDIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 40.0 bits (94), Expect = 1e-05
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHIL 59
P F I + G + + LD E Y L V T+ +G + + V ++
Sbjct: 45 QDPKGTFRI-----NENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVI 99
Query: 60 D 60
D
Sbjct: 100 D 100
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 38.2 bits (89), Expect = 5e-05
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
P +F I + G + +PLD EA Y L V T+++G + + ++
Sbjct: 44 QDPKGIFRI-----NEISGDVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVI 98
Query: 60 D 60
D
Sbjct: 99 D 99
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 31.8 bits (73), Expect = 0.015
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 20 GVLLTKKPLDYEATR------IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYF 68
G LL K+ LD E I + V + + + D ND+ P F
Sbjct: 64 GNLLLKEKLDREELCGSTNPCILHFQVLLKSPV---QFIQGEIQLQDVNDHAPEF 115
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine
ribonucleotide biosynthesis, structural genomics,
infectious diseases; 1.75A {Bacillus anthracis} PDB:
3osc_A*
Length = 234
Score = 29.0 bits (65), Expect = 0.29
Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 35 IY-NLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
IY + +T + + + + + ++ ++ P + G + A V L
Sbjct: 57 IYCDNRLTLSYPKVRQTIAAGLEELIK--EHFPTVEVI--AGTATAGIAHAAWVSDRMDL 112
Query: 94 PLVI-RAEDKDSETNALLDGS 113
P+ R++ K ++G
Sbjct: 113 PMCYVRSKAKGHGKGNQIEGK 133
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural
genomics, PSI, structure initiative; 1.95A
{Streptococcus pyogenes} SCOP: c.61.1.1
Length = 211
Score = 27.4 bits (61), Expect = 0.97
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 35 IY-NLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYTGYVSEAAPIGALVLTNTSL 93
IY + VT + + + V + + P + G + P GA++ +L
Sbjct: 37 IYTDNRVTLSYPKTRDLIENGFVETIK--AHFPEVEVI--AGTATAGIPHGAIIADKMTL 92
Query: 94 PLVI-RAEDKDSETNALLDGS 113
P R++ KD ++G
Sbjct: 93 PFAYIRSKPKDHGAGNQIEGR 113
>2gti_A Replicase polyprotein 1AB; MHV, NSP15, F307L, viral protein; 2.15A
{Murine hepatitis virus} SCOP: c.66.1.48 d.294.1.2 PDB:
2gth_A
Length = 370
Score = 27.4 bits (60), Expect = 0.98
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L+ ++ + Y+++ I++ +T N +K+VC+VI +LD D LN
Sbjct: 290 SNLVIQEFVTYDSS-IHSYLITDENSGSSKSVCTVIDLLLD--DFVDIVKSLNLK 341
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A
{Streptococcus mutans}
Length = 243
Score = 27.5 bits (61), Expect = 1.0
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 80 AAPIGALVLTNTSLPLVI-RAEDKDSETNALLDG 112
P GA++ +LPL R++ KD ++G
Sbjct: 111 GIPHGAIIADKMNLPLAYIRSKPKDHGAGNQIEG 144
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.6
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 76 YVSEAAPIGALVLTNT 91
Y ++AP AL + T
Sbjct: 32 YADDSAP--ALAIKAT 45
>2h85_A Putative ORF1AB polyprotein; endoribonuclease, RNA, NSP, viral
protein; 2.60A {Sars coronavirus} SCOP: c.66.1.48
d.294.1.2 PDB: 2ozk_A 2rhb_A
Length = 347
Score = 26.6 bits (58), Expect = 2.1
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 35 IYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+ N +T +K CSVI +L D + +
Sbjct: 277 VKNYFITDAQTGSSKCGCSVIDLLLG--DFVEIIKSQDLS 314
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 25.1 bits (54), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 30 YEATRIYNLSVTATNMAG 47
YE+ IY +SV A N AG
Sbjct: 90 YESPGIYRVSVRAENTAG 107
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 24.8 bits (55), Expect = 7.6
Identities = 8/10 (80%), Positives = 9/10 (90%), Gaps = 1/10 (10%)
Query: 39 SVT-ATNMAG 47
+VT ATNMAG
Sbjct: 491 AVTIATNMAG 500
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,643,895
Number of extensions: 84870
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 78
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)