RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7564
(115 letters)
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 40.0 bits (92), Expect = 8e-06
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 60 DRNDNTPYFTQLNYTGYVSEAAPIGALVLT 89
+ F + Y+ + + G +L
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLN 34
Score = 30.0 bits (66), Expect = 0.033
Identities = 6/58 (10%), Positives = 11/58 (18%)
Query: 16 HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNY 73
G + + A + L K +V + P
Sbjct: 58 VDEDGTVYAVRSFPLTAEQAKFLIYAQDKETQEKWQVAVNLSREPTLTEEPMKEPHEI 115
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 38.9 bits (89), Expect = 2e-05
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVL 88
NDN P FTQ + G V E G V+
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVM 28
Score = 32.3 bits (72), Expect = 0.005
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 16 HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILD 60
+ L LD E Y L+V AT++ GA I+ I D
Sbjct: 67 RETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 38.5 bits (88), Expect = 2e-05
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLTNTSLPLVIRAEDKDSETNALLDGS 113
NDN P F + G V E + G V+T T++ ++ +
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQA 52
Score = 28.5 bits (62), Expect = 0.11
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 18 PYGVLLTKKPLDYEATRIYNLSVTATNMAG-----AKAVCSVIVHILD 60
++ LD E + Y L + AT+M G + ++ + D
Sbjct: 67 TGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 38.2 bits (87), Expect = 3e-05
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVL 88
NDN P FTQ + G V+E A G V+
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVM 27
Score = 26.2 bits (56), Expect = 0.77
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 16 HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGA--KAVCSVIVHILD 60
+ + LD E+ Y L V A ++ G ++ + D
Sbjct: 66 RDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 35.3 bits (80), Expect = 3e-04
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 63 DNTPYFTQLNYTGYVSEAAPIGALVLTNT 91
+ P+F VSE G +++
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLV 29
Score = 29.6 bits (65), Expect = 0.035
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 16 HPPYGVLLTKKPLDYEA----TRIYNLSVTATNMAG--AKAVCSVIVHILD 60
+ G++ LD E+ Y + + T+ ++I+H+LD
Sbjct: 56 NKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLD 106
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 34.6 bits (78), Expect = 6e-04
Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALVLT 89
NDN P F YT V E G V
Sbjct: 2 NDNAPIFDPKTYTALVPENEI-GFEVQR 28
Score = 26.1 bits (56), Expect = 0.67
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 22 LLTKKPLDYEATRIYNLSVTATNMAGA-----KAVCSVIVHILD 60
L T K LD+E + Y L +T N + +V V + D
Sbjct: 69 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVED 112
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 32.7 bits (73), Expect = 0.003
Identities = 3/38 (7%), Positives = 9/38 (23%)
Query: 29 DYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTP 66
Y++ V ++ + V +
Sbjct: 67 QQLKKGDYSIYVLLSDAQNNPQLTVVNATVCSCEGKAI 104
Score = 27.7 bits (60), Expect = 0.18
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 62 NDNTPYFTQLNYTGYVSEAAPIGALV 87
NDN P + +T + + P ++
Sbjct: 1 NDNGPVPSPRVFT--MCDQNPEPQVL 24
>d2gtia2 d.294.1.2 (A:217-369) Nsp15, C-terminal domain {Murine
hepatitis virus, MHV [TaxId: 11138]}
Length = 153
Score = 28.6 bits (64), Expect = 0.12
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 20 GVLLTKKPLDYEATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
L+ ++ + Y+++ I++ +T N +K+VC+VI +LD D LN
Sbjct: 73 SNLVIQEFVTYDSS-IHSYLITDENSGSSKSVCTVIDLLLD--DFVDIVKSLNLK 124
>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS
coronavirus [TaxId: 227859]}
Length = 155
Score = 27.5 bits (61), Expect = 0.26
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 32 ATRIYNLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQLNYT 74
+ + N +T +K CSVI +L D + +
Sbjct: 82 DSTVKNYFITDAQTGSSKCGCSVIDLLLG--DFVEIIKSQDLS 122
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 25.9 bits (56), Expect = 0.70
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 2 SHPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHIL 59
+ P +F I G +L +PLD E Y LS A + G+ + ++++
Sbjct: 45 NPPQGVFRI-----EWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVI 99
Query: 60 D 60
D
Sbjct: 100 D 100
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 25.5 bits (55), Expect = 1.1
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 4 PVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILD 60
PV +F I G L +PLD E Y L A + G +++ + D
Sbjct: 50 PVGVFII-----ERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 103
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 24.8 bits (53), Expect = 1.9
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 16 HPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAK--AVCSVIVHILD 60
+P G L KPLD E ++L A ++ G + ++++++D
Sbjct: 56 NPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102
>d1qexa_ b.32.1.1 (A:) gp9 {Bacteriophage T4 [TaxId: 10665]}
Length = 288
Score = 24.4 bits (53), Expect = 3.5
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 37 NLSVTATNMAGAKAVCSVIVHILDRNDNTPYFTQ 70
L VT ++ G K + I ++D ++ ++
Sbjct: 201 KLLVTCQSVDGRKIKTAEINILVDTVNSEVISSE 234
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2,
SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 23.3 bits (50), Expect = 6.8
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 3 HPVQLFAILKPALHPPYGVLLTKKPLDYEATRIYNLSVTATNMAGAKA 50
PV K + PP + K +++ T +L A +
Sbjct: 67 RPVGWCQENKYRMDPPSEIYPLKMASEWKCTLEKSLIDAAKFPLPMEV 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 380,522
Number of extensions: 14625
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 24
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)