BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7567
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 84 FKGLKYISFLSSWPTQV---SAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTA 140
+ GL Y F + +P S Y++ A++ DRYMAI+ PL+PR+S K VI IW+ A
Sbjct: 99 YYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLA 158
Query: 141 MVTAVPV-FVTTGQTIPNDTFYEFCEFYICGEDW-EDPE--MKTAYSILVAMLQYGVPLV 196
++ A P + +T +T+P+ +C +W E P + Y I V +L Y +PL+
Sbjct: 159 LLLAFPQGYYSTTETMPSRV--------VCMIEWPEHPNKIYEKVYHICVTVLIYFLPLL 210
Query: 197 VLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSK 230
V+ + YT + I +W + PG++ ++ +++ +
Sbjct: 211 VIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKR 244
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP-RMSKGHAKFVIVTIWLTAMVTA 144
G F ++ +++ ++LV ++I+RY+ + P+ R + HA + W+ A+ A
Sbjct: 110 GCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 145 VPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKT---AYSILVAMLQYGVPLVVLVFT 201
P V + IP C CG D+ P +T ++ I + ++ + +PL+V+ F
Sbjct: 170 APPLVGWSRYIPEGM---QCS---CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 223
Query: 202 YTSIAIVVWGKQPPGEAENQRDRRMAKSKRKK 233
Y + V EA Q+ K +K
Sbjct: 224 YGQLVFTV------KEAAAQQQESATTQKAEK 249
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP-RMSKGHAKFVIVTIWLTAMVTA 144
G F ++ +++ ++LV ++I+RY+ + P+ R + HA + W+ A+ A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 145 VPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKT---AYSILVAMLQYGVPLVVLVFT 201
P V + IP C CG D+ P +T ++ I + ++ + +PL+V+ F
Sbjct: 170 APPLVGWSRYIPEGM---QCS---CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 223
Query: 202 YTSIAIVVWGKQPPGEAENQRDRRMAKSKRKK 233
Y + V EA Q+ K +K
Sbjct: 224 YGQLVFTV------KEAAAQQQESATTQKAEK 249
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP-RMSKGHAKFVIVTIWLTAMVTA 144
G F ++ +++ ++LV ++I+RY+ + P+ R + HA + W+ A+ A
Sbjct: 109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 168
Query: 145 VPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKT---AYSILVAMLQYGVPLVVLVFT 201
P V + IP C CG D+ P +T ++ I + ++ + +PL+V+ F
Sbjct: 169 APPLVGWSRYIPEGM---QCS---CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 222
Query: 202 YTSIAIVVWGKQPPGEAENQRDRRMAKSKRKK 233
Y + V EA Q+ K +K
Sbjct: 223 YGQLVFTV------KEAAAQQQESATTQKAEK 248
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP-RMSKGHAKFVIVTIWLTAMVTA 144
G F ++ +++ ++LV ++I+RY+ + P+ R + HA + W+ A+ A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 145 VPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKT---AYSILVAMLQYGVPLVVLVFT 201
P V + IP C CG D+ P +T ++ I + ++ + +PL+V+ F
Sbjct: 170 APPLVGWSRYIPEGM---QCS---CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 223
Query: 202 YTSIAIVVWGKQPPGEAENQRDRRMAKSKRKK 233
Y + V EA Q+ K +K
Sbjct: 224 YGQLVFTV------KEAAAQQQESATTQKAEK 249
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP-RMSKGHAKFVIVTIWLTAMVTA 144
G F ++ +++ ++LV ++I+RY+ + P+ R + HA + W+ A+ A
Sbjct: 110 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 169
Query: 145 VPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKT---AYSILVAMLQYGVPLVVLVFT 201
P V + IP C CG D+ P +T ++ I + ++ + +PL+V+ F
Sbjct: 170 APPLVGWSRYIPEGM---QCS---CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 223
Query: 202 YTSIAIVVWGKQPPGEAENQRDRRMAKSKRKK 233
Y + V EA Q+ K +K
Sbjct: 224 YGQLVFTV------KEAAAQQQESATTQKAEK 249
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP-RMSKGHAKFVIVTIWLTAMVTA 144
G F ++ +++ ++LV ++I+RY+ + P+ R + HA + W+ A+ A
Sbjct: 109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 168
Query: 145 VPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKT---AYSILVAMLQYGVPLVVLVFT 201
P V + IP C CG D+ P +T ++ I + ++ + +PL+V+ F
Sbjct: 169 APPLVGWSRYIPEGM---QCS---CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 222
Query: 202 YTSIAIVVWGKQPPGEAENQRDRRMAKSKRKK 233
Y + V EA Q+ K +K
Sbjct: 223 YGQLVFTV------KEAAAQQQESATTQKAEK 248
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQTIPN 157
S +TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 128 SIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 187
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 188 EAINCYAEETCC-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 230
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQTIPN 157
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 269 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 328
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 329 EAINCYAEETCC-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 371
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQTIPN 157
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 128 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 187
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 188 EAINCYAEETCC-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 230
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQTIPN 157
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 186
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 187 EAINCYAEETCC-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 229
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQTIPN 157
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 121 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 180
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 181 EAINCYAEETCC-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 223
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPND 158
S +TL A+S+DRY+AI P+R + A+ V V IW A V VPV + + ++
Sbjct: 211 STFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDE 270
Query: 159 TFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWG-KQPPGE 217
E + W ++I + + + VP++V+ Y+ + + G + G
Sbjct: 271 EIECLVEIPTPQDYW-----GPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGS 325
Query: 218 AENQRDRR 225
E R+ R
Sbjct: 326 REKDRNLR 333
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQTIPN 157
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 96 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 155
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 156 EAINCYAEETCC-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 198
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPV----FVTTGQ 153
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + T Q
Sbjct: 120 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 179
Query: 154 TIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
N E C C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 180 EAINCYANETC----C-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 222
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 101 SAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIW-LTAMVTAVPVFVTTGQTIPN 157
S TL I+IDRY+AI P R M++ AK +I T+W ++A+V+ +P+ + +
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP 157
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGE 217
+ + C D AY+I +++ + +PL++++F +A+ V+ E
Sbjct: 158 QALKCYQDPGCC-----DFVTNRAYAIASSIISFYIPLLIMIF----VALRVY-----RE 203
Query: 218 AENQRDRRMAKSKRKKI 234
A+ Q + SKRK++
Sbjct: 204 AKEQIRKIDRASKRKRV 220
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPV----FVTTGQ 153
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + T Q
Sbjct: 97 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 156
Query: 154 TIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
N E C C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 157 EAINCYANETC----C-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 199
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQTIPN 157
S TL I++DRY AI P + + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 92 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 151
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C D AY+I +++ + VPLV++VF Y+ +
Sbjct: 152 EAINCYAEETCC-----DFFTNQAYAIASSIVSFYVPLVIMVFVYSRV 194
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 17/135 (12%)
Query: 101 SAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIW-LTAMVTAVPVFVTTGQTIPN 157
S TL I+IDRY+AI P R M++ AK +I T+W ++A+V+ +P+ + +
Sbjct: 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP 157
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGE 217
+ + C D AY+I +++ + +PL++++F +A+ V+ E
Sbjct: 158 QALKCYQDPGCC-----DFVTNRAYAIASSIISFYIPLLIMIF----VALRVY-----RE 203
Query: 218 AENQRDRRMAKSKRK 232
A+ Q + SKRK
Sbjct: 204 AKEQIRKIDRASKRK 218
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPND 158
S +TL +S+DRY+A+ P++ + AK + + IWL + + V G + D
Sbjct: 108 SIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVRED 167
Query: 159 TFYEFCEFYICGED--WEDPEMKTAYSILVAMLQYGVPLVVLVFTYT 203
C +D W D MK I V + + +P+++++ YT
Sbjct: 168 VDVIECSLQFPDDDYSWWDLFMK----ICVFIFAFVIPVLIIIVCYT 210
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVT 143
G + FL T +A + ++S+ RY+AI P + + MS+ K I IWL + +
Sbjct: 109 GCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALL 168
Query: 144 AVPVFVTTG 152
A+P+ T G
Sbjct: 169 AIPMLFTMG 177
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 105 LVAISIDRYMAIMWPLRPRMSKGH-AKFVIVTIWLTAMVTAVPVFVTTGQTIPNDT---F 160
L IS+DRY+AI+ R K H KFV + W +M ++P F+ PN++
Sbjct: 100 LACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVC 159
Query: 161 YEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTY 202
YE + G D + + IL + VPL V++F Y
Sbjct: 160 YE-----VLGND--TAKWRMVLRILPHTFGFIVPLFVMLFCY 194
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPND 158
S +TL +S+DRY+A+ P++ + AK + + IW+ A VP+ V T P D
Sbjct: 100 SIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMV-MAVTQPRD 158
Query: 159 TFYEFCEFYICGEDWEDPE--MKTAYSILVAMLQYGVPLVVLVFTY 202
+C + P T I V + + VP++++ Y
Sbjct: 159 ------GAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCY 198
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 83 NFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP--RMSKGHAKFVIVTIWLTA 140
F K F+ +S T+ ISIDRY I P+ +MS A +I+ +WL +
Sbjct: 104 GFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWS 163
Query: 141 MVTAV-PVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVA-MLQYGVPLVVL 198
++ A+ P+F T+ C C D+ + T +IL +L + P++++
Sbjct: 164 VLWAIGPIFGWGAYTLEG----VLCN---CSFDYISRDSTTRSNILCMFILGFFGPILII 216
Query: 199 VFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRK 232
F Y +I + V + E R AK RK
Sbjct: 217 FFCYFNIVMSVSNHEK--EMAAMAKRLNAKELRK 248
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 83 NFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP--RMSKGHAKFVIVTIWLTA 140
F K F+ +S T+ ISIDRY I P+ +MS A +I+ +WL +
Sbjct: 103 GFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWS 162
Query: 141 MVTAV-PVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVA-MLQYGVPLVVL 198
++ A+ P+F T+ C C D+ + T +IL +L + P++++
Sbjct: 163 VLWAIGPIFGWGAYTLEG----VLCN---CSFDYISRDSTTRSNILCMFILGFFGPILII 215
Query: 199 VFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRK 232
F Y +I + V + E R AK RK
Sbjct: 216 FFCYFNIVMSVSNHE--KEMAAMAKRLNAKELRK 247
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWL 138
G +I+ TQ S ++L+AI+IDRY+AI PLR ++ AK +I W+
Sbjct: 100 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 155
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWL 138
G +I+ TQ S ++L+AI+IDRY+AI PLR ++ AK +I W+
Sbjct: 90 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 145
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWL 138
G +I+ TQ S ++L+AI+IDRY+AI PLR ++ AK +I W+
Sbjct: 75 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 130
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 105 LVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFV 149
+ ISIDR++A+++P++ + G A F + IW A+ VP+ +
Sbjct: 111 MTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLL 157
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 101 SAYTLVAISIDRYMAIMWPLRPRMSKGHAK-----FVIVTIWLTAMVTAVPV---FVTTG 152
S + L AISIDRY A++ P+ + G + +I +W+ A + P+ F TTG
Sbjct: 126 SIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG 185
Query: 153 Q 153
Sbjct: 186 D 186
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 101 SAYTLVAISIDRYMAIMWPL---RPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN 157
S + L IS+DRY+AI+ RPR K V V +W+ A++ +P F+ + +
Sbjct: 133 SVWILAFISLDRYLAIVHATNSQRPRKLLAE-KVVYVGVWIPALLLTIPDFIFANVSEAD 191
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
D YIC + + + M+ +P +V++ Y I
Sbjct: 192 DR-------YICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCII 232
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 101 SAYTLVAISIDRYMAIMWPL---RPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN 157
S + L IS+DRY+AI+ RPR K V V +W+ A++ +P F+ + +
Sbjct: 133 SVWILAFISLDRYLAIVHATNSQRPRKLLAE-KVVYVGVWIPALLLTIPDFIFANVSEAD 191
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
D YIC + + + M+ +P +V++ Y I
Sbjct: 192 DR-------YICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCII 232
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 101 SAYTLVAISIDRYMAIMWPL---RPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN 157
S + L IS+DRY+AI+ RPR K V V +W+ A++ +P F+ + +
Sbjct: 133 SVWILAFISLDRYLAIVHATNSQRPRKLLAE-KVVYVGVWIPALLLTIPDFIFANVSEAD 191
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
D YIC + + + M+ +P +V++ Y I
Sbjct: 192 DR-------YICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCII 232
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWL 138
G +I+ T S ++L+AI+IDRY+AI PLR ++ AK +I W+
Sbjct: 75 HGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWV 130
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR 121
G +I+ Q S ++L+AI+IDRY+AI PLR
Sbjct: 75 HGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLR 111
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 101 SAYTLVAISIDRYMAIMWPLR------PRMSKGHAKFVIVTIWLTAMVTAVPV 147
S +TL +S+DRY+A+ P++ PR +AK V V W+ + +PV
Sbjct: 103 SIFTLCTMSVDRYIAVCHPVKALDFRTPR----NAKIVNVCNWILSSAIGLPV 151
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 98 TQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAVPV-----FVT 150
+ S +++ + IDRY ++ PLR +K A I+ W + + +P+ F+
Sbjct: 92 STASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQ 151
Query: 151 TGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
D C D+ D T + ++ A++ + +P +++++ Y I
Sbjct: 152 QTSVRREDK---------CETDFYDV---TWFKVMTAIINFYLPTLLMLWFYAKI 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,030,805
Number of Sequences: 62578
Number of extensions: 261478
Number of successful extensions: 698
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 37
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)