Query psy7567
Match_columns 245
No_of_seqs 155 out of 1703
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:43:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 2.1E-30 4.5E-35 213.0 10.0 197 42-245 39-277 (423)
2 PHA03234 DNA packaging protein 99.9 3.9E-26 8.5E-31 192.3 3.9 167 38-212 32-227 (338)
3 PHA03235 DNA packaging protein 99.9 3.2E-25 7E-30 190.9 7.9 175 39-213 33-235 (409)
4 PHA02834 chemokine receptor-li 99.9 1.4E-24 3.1E-29 182.4 9.6 163 39-213 29-220 (323)
5 PHA02638 CC chemokine receptor 99.9 6.5E-23 1.4E-27 177.3 7.0 173 38-213 98-304 (417)
6 KOG4220|consensus 99.9 7.4E-22 1.6E-26 162.8 6.7 166 38-214 30-225 (503)
7 PHA03087 G protein-coupled che 99.8 4.6E-21 1E-25 162.0 10.1 163 39-213 41-234 (335)
8 PF00001 7tm_1: 7 transmembran 99.8 3.3E-21 7.3E-26 155.3 2.1 173 55-237 1-204 (257)
9 KOG2087|consensus 99.7 1.1E-15 2.3E-20 125.2 10.9 158 46-216 32-226 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.2 8.6E-12 1.9E-16 101.5 2.2 89 50-142 2-118 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 98.8 5.8E-09 1.3E-13 85.8 3.6 99 48-150 3-132 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 98.6 2.8E-08 6.1E-13 83.5 3.3 171 48-219 6-229 (318)
13 PF05296 TAS2R: Mammalian tast 98.4 9.3E-08 2E-12 79.6 0.6 194 42-238 10-237 (303)
14 PF10323 7TM_GPCR_Srv: Serpent 98.3 6E-07 1.3E-11 74.1 3.0 138 88-238 76-216 (283)
15 PF05462 Dicty_CAR: Slime mold 97.7 6.9E-05 1.5E-09 62.3 4.9 104 44-149 12-135 (303)
16 PF03402 V1R: Vomeronasal orga 97.6 8.2E-05 1.8E-09 60.4 4.6 154 84-240 45-206 (265)
17 PF11710 Git3: G protein-coupl 97.0 0.015 3.4E-07 45.4 10.9 117 85-214 72-199 (201)
18 PF10292 7TM_GPCR_Srab: Serpen 96.6 0.021 4.4E-07 48.3 9.6 56 87-142 96-152 (324)
19 PF10317 7TM_GPCR_Srd: Serpent 96.2 0.018 3.9E-07 47.8 7.1 104 43-150 3-142 (292)
20 PF10326 7TM_GPCR_Str: Serpent 95.8 0.01 2.2E-07 49.6 3.7 38 178-215 192-229 (307)
21 PF02118 Srg: Srg family chemo 95.5 0.022 4.7E-07 46.7 4.7 63 87-149 81-144 (275)
22 PF10316 7TM_GPCR_Srbc: Serpen 95.5 0.2 4.4E-06 41.1 10.0 26 98-123 92-117 (273)
23 PF00002 7tm_2: 7 transmembran 95.3 0.007 1.5E-07 48.6 1.2 63 87-151 72-134 (242)
24 PF10321 7TM_GPCR_Srt: Serpent 95.0 0.052 1.1E-06 45.5 5.3 121 85-216 98-229 (313)
25 PF10327 7TM_GPCR_Sri: Serpent 94.6 0.079 1.7E-06 44.3 5.6 172 37-216 7-227 (303)
26 PF10322 7TM_GPCR_Sru: Serpent 93.6 0.5 1.1E-05 39.5 8.3 119 88-213 104-226 (307)
27 PF13853 7tm_4: Olfactory rece 92.8 0.0061 1.3E-07 45.0 -3.8 81 130-214 4-89 (144)
28 PF10318 7TM_GPCR_Srh: Serpent 92.3 0.52 1.1E-05 39.2 6.7 65 87-151 85-149 (302)
29 PF02117 7TM_GPCR_Sra: Serpent 92.3 3.5 7.6E-05 34.9 11.7 39 85-123 99-137 (328)
30 PF03383 Serpentine_r_xa: Caen 91.2 0.53 1.1E-05 35.0 4.9 61 90-150 47-109 (153)
31 PF02175 7TM_GPCR_Srb: Serpent 90.2 5.6 0.00012 31.8 10.0 39 85-123 83-121 (236)
32 PF02101 Ocular_alb: Ocular al 89.8 2.2 4.8E-05 36.5 7.9 59 87-149 116-174 (405)
33 KOG4193|consensus 81.6 4.5 9.8E-05 37.2 6.3 64 86-150 385-448 (610)
34 PF03125 Sre: C. elegans Sre G 79.8 38 0.00083 29.1 11.3 37 91-127 127-163 (365)
35 PF04789 DUF621: Protein of un 79.7 33 0.00072 28.3 11.1 113 93-210 96-214 (305)
36 PF06681 DUF1182: Protein of u 77.7 9.2 0.0002 29.9 5.9 37 85-121 115-151 (226)
37 PF10325 7TM_GPCR_Srz: Serpent 69.6 59 0.0013 26.3 11.8 119 93-225 88-209 (267)
38 PF01534 Frizzled: Frizzled/Sm 63.1 95 0.0021 26.4 11.9 85 85-176 92-176 (328)
39 PF02076 STE3: Pheromone A rec 47.8 1.6E+02 0.0035 24.4 8.9 67 85-153 57-128 (283)
40 PF15086 UPF0542: Uncharacteri 40.6 57 0.0012 20.8 3.5 32 182-213 20-52 (74)
41 PF11446 DUF2897: Protein of u 39.5 10 0.00023 22.9 0.1 17 46-62 8-25 (55)
42 PF10361 DUF2434: Protein of u 39.2 11 0.00024 31.0 0.3 20 41-60 49-68 (296)
43 PF00001 7tm_1: 7 transmembran 34.7 43 0.00093 25.9 3.0 67 178-244 148-217 (257)
44 PF06695 Sm_multidrug_ex: Puta 31.1 1.3E+02 0.0028 21.3 4.6 33 182-214 18-50 (121)
45 PHA02909 hypothetical protein; 29.7 1.3E+02 0.0028 18.0 3.9 28 182-209 36-63 (72)
46 PF14362 DUF4407: Domain of un 24.9 2.4E+02 0.0051 23.4 5.9 21 98-118 50-70 (301)
47 PF01102 Glycophorin_A: Glycop 24.3 10 0.00022 27.1 -2.0 21 51-71 75-95 (122)
48 PF05241 EBP: Emopamil binding 23.4 1.7E+02 0.0037 22.7 4.4 36 178-213 157-192 (194)
No 1
>KOG4219|consensus
Probab=99.97 E-value=2.1e-30 Score=213.02 Aligned_cols=197 Identities=28% Similarity=0.511 Sum_probs=154.3
Q ss_pred hhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc----------------------------cCceeechh
Q psy7567 42 QNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF----------------------------KGLKYISFL 93 (245)
Q Consensus 42 ~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l----------------------------~~C~~~~~~ 93 (245)
..+|+++++++++||++|+|+...+|+.|+.++ .++.|+ ..|++..|+
T Consensus 39 ai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtn----yfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~ 114 (423)
T KOG4219|consen 39 AIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTN----YFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFF 114 (423)
T ss_pred HHHHHHHHHHHHhcCceEEEEEeehhehhhhHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeecccc
Confidence 567999999999999999999988777777665 333343 469999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeeecCCC
Q psy7567 94 SSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDW 173 (245)
Q Consensus 94 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C~~~~ 173 (245)
..+...+|+++|++||+|||+||.||++.+.+++.+..+++++|+.|++++.|..+.......+..+.. ....|...+
T Consensus 115 ~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~--~~~~~~~~~ 192 (423)
T KOG4219|consen 115 PITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGE--SRVVCVTAW 192 (423)
T ss_pred chhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCc--ceEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999998876542221100 112333333
Q ss_pred CC-----hhhh---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHhhhhhhceee------e
Q psy7567 174 ED-----PEMK---TAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRKKIPKCQ------I 239 (245)
Q Consensus 174 ~~-----~~~~---~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~------i 239 (245)
++ +... +.|...+.++.+++|++++..+|+.|.+++|.++..+++++ +..+..+.++|++||++ .
T Consensus 193 pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-~~~~~~kak~K~vkmliiVV~~Fa 271 (423)
T KOG4219|consen 193 PEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-RKHEQLKAKKKVVKMLIIVVVIFA 271 (423)
T ss_pred ccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2112 22777888889999999999999999999998886655544 45566778888888774 4
Q ss_pred eeccCC
Q psy7567 240 LCYKNF 245 (245)
Q Consensus 240 i~~~~f 245 (245)
+||+|+
T Consensus 272 icWlPy 277 (423)
T KOG4219|consen 272 ICWLPY 277 (423)
T ss_pred HhccCh
Confidence 677764
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.92 E-value=3.9e-26 Score=192.35 Aligned_cols=167 Identities=11% Similarity=0.093 Sum_probs=116.3
Q ss_pred eeeehhhHHHHHHHHHhhceeeEEeeecc--cccCcccccc------------------------ceeeeecccCceeec
Q psy7567 38 QEMKQNSRGVAFFVKLLQKSLSKDGSSTK--SKRKSSFDHK------------------------GFVLLKNFKGLKYIS 91 (245)
Q Consensus 38 ~~~~~~~~~vi~ivg~~gN~lvi~v~~~~--~~~~~~~~~~------------------------~~~l~~~l~~C~~~~ 91 (245)
+...+++|++++++|++||++|++++... +++++.++.. .|.++ ...||+..
T Consensus 32 ~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~~~~~w~fG--~~lCk~~~ 109 (338)
T PHA03234 32 QILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFFLTLNREALFNFN--QAFCQCVL 109 (338)
T ss_pred HHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCc--hhHHHHHH
Confidence 44567899999999999999999966522 2223433321 12221 14699999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeeecC
Q psy7567 92 FLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGE 171 (245)
Q Consensus 92 ~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C~~ 171 (245)
++.....++|+++|++||+|||+||++|.+++.++++....+++.|+.+++.++|+++..+....+ +. ...|..
T Consensus 110 ~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~-~~-----~~~C~~ 183 (338)
T PHA03234 110 FIYHASCSYSICMLAIIATIRYKTLHRRKKNDKKNNHIGRNIGILFLASAMCAIPAALFVKTEGKK-GN-----YGKCNI 183 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHeeeechhhhhhhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecC-CC-----CCcCcc
Confidence 999999999999999999999999999998654344444556667999999999998765433211 11 124666
Q ss_pred CCCChhhhHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Q psy7567 172 DWEDPEMKTAYS---ILVAMLQYGVPLVVLVFTYTSIAIVVWGK 212 (245)
Q Consensus 172 ~~~~~~~~~~~~---~~~~~~~f~lP~~ii~~~y~~I~~~l~~~ 212 (245)
.++++.....+. ....+++|++|+++|.+||.+|.++++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~ 227 (338)
T PHA03234 184 HISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL 227 (338)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 654332111121 12234457899999999999999999753
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.92 E-value=3.2e-25 Score=190.88 Aligned_cols=175 Identities=16% Similarity=0.128 Sum_probs=122.1
Q ss_pred eeehhhHHHHHHHHHhhceeeEEeeecccccC--cccccc----------------------ceeeeecccCceeechhh
Q psy7567 39 EMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRK--SSFDHK----------------------GFVLLKNFKGLKYISFLS 94 (245)
Q Consensus 39 ~~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~--~~~~~~----------------------~~~l~~~l~~C~~~~~~~ 94 (245)
....+++.+++++|++||+++++++..+++++ +..+.. .|.+..+...|++..++.
T Consensus 33 ~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l~~lP~~i~~~~~~~~~g~~~Ck~~~~l~ 112 (409)
T PHA03235 33 TTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFVLPFIMLSNQGLLSGSVAGCKFASLLY 112 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCeehhHHHHH
Confidence 35678899999999999999998754323322 222221 112222224799999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCCCCc-cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeeecCCC
Q psy7567 95 SWPTQVSAYTLVAISIDRYMAIMWPLRPR-MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDW 173 (245)
Q Consensus 95 ~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C~~~~ 173 (245)
..+..+|++++++||+|||++|++|.+++ .+++++..+++++|+.+++.++|+.+..+................|...+
T Consensus 113 ~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~ 192 (409)
T PHA03235 113 YASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYF 192 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeC
Confidence 99999999999999999999999998764 56888999999999999999999776543211000000000122465444
Q ss_pred CChhh---hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q psy7567 174 EDPEM---KTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQ 213 (245)
Q Consensus 174 ~~~~~---~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~ 213 (245)
..+.. ...|....+++.|++|+++|++||.+|++++++++
T Consensus 193 ~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~ 235 (409)
T PHA03235 193 RADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRAS 235 (409)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33321 22355566677899999999999999999998653
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.91 E-value=1.4e-24 Score=182.38 Aligned_cols=163 Identities=16% Similarity=0.165 Sum_probs=119.0
Q ss_pred eeehhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc--------------------------cCceeech
Q psy7567 39 EMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF--------------------------KGLKYISF 92 (245)
Q Consensus 39 ~~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l--------------------------~~C~~~~~ 92 (245)
....++|++++++|++||+++++++.++++ ++..+ .+..++ ..|++..+
T Consensus 29 ~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n----~~i~nLAiaDll~~~~lP~~i~~~~~~w~~g~~~C~~~~~ 103 (323)
T PHA02834 29 YFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVD----VYLFNIAMSDLMLVFSFPFIIHNDLNEWIFGEFMCKLVLG 103 (323)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhh----hhhHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHhHHH
Confidence 456788999999999999999998765333 33332 222232 35999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc-cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeeecC
Q psy7567 93 LSSWPTQVSAYTLVAISIDRYMAIMWPLRPR-MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGE 171 (245)
Q Consensus 93 ~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C~~ 171 (245)
+...+..+|++++++||+|||.+|++|++++ .+.+++...++++|+.+++.++|+...+..... . +...|..
T Consensus 104 ~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~--~-----~~~~C~~ 176 (323)
T PHA02834 104 VYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT--D-----NLKQCIF 176 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhccC--C-----CceEEec
Confidence 9999999999999999999999999999864 455677778889999999999998775433211 1 1123542
Q ss_pred CCCCh--hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q psy7567 172 DWEDP--EMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQ 213 (245)
Q Consensus 172 ~~~~~--~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~ 213 (245)
...++ .+...+.....+..|++|+++|+++|.+|.+++++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~ 220 (323)
T PHA02834 177 NDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCK 220 (323)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22221 2222234445577899999999999999999998754
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.88 E-value=6.5e-23 Score=177.26 Aligned_cols=173 Identities=16% Similarity=0.165 Sum_probs=121.9
Q ss_pred eeeehhhHHHHHHHHHhhceeeEEeeecccccCcccccc------------------------ceeeeecccCceeechh
Q psy7567 38 QEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHK------------------------GFVLLKNFKGLKYISFL 93 (245)
Q Consensus 38 ~~~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~------------------------~~~l~~~l~~C~~~~~~ 93 (245)
.....++|.+++++|++||+++++++. ++++++..+.. .|.+. ...|++..++
T Consensus 98 ~~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l~lPf~i~~~~~~W~fg--~~~Ck~~~~l 174 (417)
T PHA02638 98 SEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVIDFPFIIYNEFDQWIFG--DFMCKVISAS 174 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--ccchhhHHHH
Confidence 345568899999999999999997764 34444433321 22222 1569999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCCc--cccchHHHHHHHHHHHHHHHhhhHhhhccccccC---CCcccccceee
Q psy7567 94 SSWPTQVSAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN---DTFYEFCEFYI 168 (245)
Q Consensus 94 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~---~~~~~~c~~~~ 168 (245)
.....++|++++++|++|||+||+||.+++ ++++++...++++|+.+++.++|+++..+..... +..........
T Consensus 175 ~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (417)
T PHA02638 175 YYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQ 254 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCe
Confidence 999999999999999999999999999863 4666777888999999999999998876543110 00000001224
Q ss_pred ecCCCCCh-----hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q psy7567 169 CGEDWEDP-----EMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQ 213 (245)
Q Consensus 169 C~~~~~~~-----~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~ 213 (245)
|...++.+ .+...+.....++++++|++++++||.+|.+++++.+
T Consensus 255 C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~ 304 (417)
T PHA02638 255 CTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK 304 (417)
T ss_pred eeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54433221 1223344455677899999999999999999997643
No 6
>KOG4220|consensus
Probab=99.85 E-value=7.4e-22 Score=162.79 Aligned_cols=166 Identities=16% Similarity=0.152 Sum_probs=131.2
Q ss_pred eeeehhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc----------------------------cCcee
Q psy7567 38 QEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF----------------------------KGLKY 89 (245)
Q Consensus 38 ~~~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l----------------------------~~C~~ 89 (245)
-.+.+++-+.+..|+++||++|++.+-..+++++..+ +++..+ ..|.+
T Consensus 30 ~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnN----YfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~Cdl 105 (503)
T KOG4220|consen 30 VVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNN----YFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDL 105 (503)
T ss_pred EEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecc----eeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHH
Confidence 3445677888999999999999999966655555544 333333 45999
Q ss_pred echhhhHHHHHHHHHHHHHHHHHhhhhhcCCCC--ccccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCccccccee
Q psy7567 90 ISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP--RMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFY 167 (245)
Q Consensus 90 ~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~--~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~ 167 (245)
...++++..-+|++++..||+|||..|.+|+.| ++|++|+.++|++.|++++++..|.++.|..... .+.. ...
T Consensus 106 WLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivG---krTv-~~~ 181 (503)
T KOG4220|consen 106 WLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVG---KRTV-PDG 181 (503)
T ss_pred HHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhhee---eeec-CCC
Confidence 999999999999999999999999999999998 5899999999999999999999998887765431 1111 223
Q ss_pred eecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCC
Q psy7567 168 ICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQP 214 (245)
Q Consensus 168 ~C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~ 214 (245)
.|..++-+.+ .+.+...+..|.+|..+|.+.|++|++..+++.+
T Consensus 182 eC~iQFlsnp---~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k 225 (503)
T KOG4220|consen 182 ECYIQFLSNP---AITFGTAIAAFYLPVTIMTILYWRIYRETRKRQK 225 (503)
T ss_pred ceEEEeecCc---eeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5777776644 2444556777899999999999999999987654
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.85 E-value=4.6e-21 Score=161.96 Aligned_cols=163 Identities=21% Similarity=0.317 Sum_probs=122.9
Q ss_pred eeehhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc---------------------------cCceeec
Q psy7567 39 EMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF---------------------------KGLKYIS 91 (245)
Q Consensus 39 ~~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l---------------------------~~C~~~~ 91 (245)
.....++.+++++|++||+++++++.++ +++++.+. ++.++ ..|++..
T Consensus 41 ~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~----ll~~laisDll~~~~~~~~~~~~~~~~~~~~~~~C~~~~ 115 (335)
T PHA03087 41 TILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDI----YLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVS 115 (335)
T ss_pred hHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHH----HHHHHHHHHHHHHHhHHHHHHHHhCCCCCCCcHHHHHHH
Confidence 3456788999999999999999998765 55444432 11111 4599999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc--cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeee
Q psy7567 92 FLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYIC 169 (245)
Q Consensus 92 ~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C 169 (245)
++......+|++++++||+|||++|++|.+++ .+++++..+++++|+.+++.++|+........++ +...|
T Consensus 116 ~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~-------~~~~C 188 (335)
T PHA03087 116 GLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH-------ETLIC 188 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC-------CCceE
Confidence 99999999999999999999999999999873 6888999999999999999999988776543321 12245
Q ss_pred cCCCCCh--hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q psy7567 170 GEDWEDP--EMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQ 213 (245)
Q Consensus 170 ~~~~~~~--~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~ 213 (245)
...+++. .+...+.....++.+++|.++++++|.++.+.+++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~ 234 (335)
T PHA03087 189 CMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGIN 234 (335)
T ss_pred EecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5445422 2222233334566789999999999999999987654
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.82 E-value=3.3e-21 Score=155.25 Aligned_cols=173 Identities=23% Similarity=0.360 Sum_probs=128.9
Q ss_pred hceeeEEeeecccccCccccccceeeeecc----------------------------cCceeechhhhHHHHHHHHHHH
Q psy7567 55 QKSLSKDGSSTKSKRKSSFDHKGFVLLKNF----------------------------KGLKYISFLSSWPTQVSAYTLV 106 (245)
Q Consensus 55 gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l----------------------------~~C~~~~~~~~~~~~~S~~~l~ 106 (245)
||+++++++.+++++++..+. +..++ ..|++..++...+..+|.++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~----~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~ 76 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNI----LLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLV 76 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHH----HHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHH----HHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 888888888766665544442 22222 4599999999999999999999
Q ss_pred HHHHHHhhhhhcCCCCc--cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeeecCCCCChhhhHHHHH
Q psy7567 107 AISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSI 184 (245)
Q Consensus 107 ~isidRy~aI~~P~~~~--~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C~~~~~~~~~~~~~~~ 184 (245)
++|+|||++|++|.+++ .+++++...++++|+.+++.++|+.+..+.....++. ...|..+.++.. ...+..
T Consensus 77 ~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~C~~~~~~~~-~~~~~~ 150 (257)
T PF00001_consen 77 AISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS-----QSFCFIDFSSSS-SQIYFI 150 (257)
T ss_dssp HHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC-----CEEEEESCSSSH-HHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc-cccccc
Confidence 99999999999999984 6778999999999999999999998875544332211 345776666543 444666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcch-hHHHHHHHhhhhhhcee
Q psy7567 185 LVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAEN-QRDRRMAKSKRKKIPKC 237 (245)
Q Consensus 185 ~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~~-~~~~~~~~~~~k~~~~~ 237 (245)
...++.+++|+.+++++|.++.+.+++++++.+... +..+++.++++|..+++
T Consensus 151 ~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (257)
T PF00001_consen 151 YFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTL 204 (257)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceeeeeeeccccccccccccccccccccccccccccccccccccc
Confidence 777888999999999999999999998776554322 33444445555555554
No 9
>KOG2087|consensus
Probab=99.65 E-value=1.1e-15 Score=125.24 Aligned_cols=158 Identities=17% Similarity=0.268 Sum_probs=122.1
Q ss_pred HHHHHHHHhhceeeEEeeecccccCccccccceeeeecc-----------------------------------cCceee
Q psy7567 46 GVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF-----------------------------------KGLKYI 90 (245)
Q Consensus 46 ~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l-----------------------------------~~C~~~ 90 (245)
=++..+++.||++|++.....+-+..... ++..++ .+|++.
T Consensus 32 W~i~~lAi~gN~~Vl~~~~~~~~~~~~~~----~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~a 107 (363)
T KOG2087|consen 32 WVIALLAIVGNLLVLLTRFTSRYELNSHR----FLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVA 107 (363)
T ss_pred hhhhhHHhccCeeeeeeeeehhhhccchH----HHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchH
Confidence 35667899999999999877555554433 333333 679999
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhcCCCC-cc-ccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceee
Q psy7567 91 SFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP-RM-SKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYI 168 (245)
Q Consensus 91 ~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~-~~-~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~ 168 (245)
+|+..++...|+++++.+++||+++|.+|+|- +. ..|.+..+.+..|+.+++.++.|.+....+. ....
T Consensus 108 GflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~---------~~~v 178 (363)
T KOG2087|consen 108 GFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYG---------ASSV 178 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCc---------ccce
Confidence 99999999999999999999999999999995 33 3444888899999999999999988744332 2245
Q ss_pred ecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCC
Q psy7567 169 CGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPG 216 (245)
Q Consensus 169 C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~ 216 (245)
|.+-..++....-|+...++....+-+++|.++|++|+..+++...+.
T Consensus 179 ClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~ 226 (363)
T KOG2087|consen 179 CLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA 226 (363)
T ss_pred eeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc
Confidence 776665554444356677778899999999999999999997665543
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.18 E-value=8.6e-12 Score=101.52 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=65.6
Q ss_pred HHHHhhceeeEEeeecccccCccccccceeeeecc--------------------------cCceeechhhhHHHHHHHH
Q psy7567 50 FVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF--------------------------KGLKYISFLSSWPTQVSAY 103 (245)
Q Consensus 50 ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l--------------------------~~C~~~~~~~~~~~~~S~~ 103 (245)
++|++||++++....++++.|++... +...+ ..|-...+...++..++..
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~----li~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~~Cf~~~~~~~f~~~~qs~ 77 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYI----LICILCFADLICLLGTLPFMLFLFRDHQITRSECFWQIFFYIFFQCAQSV 77 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHH----HHHHHHHHHHHHHhhHHHHHHHHHhheeccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999888877777663 22211 4588888888888889999
Q ss_pred HHHHHHHHHhhhhhcCCCCc--cccchHHHHHHHHHHHHHH
Q psy7567 104 TLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMV 142 (245)
Q Consensus 104 ~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~Wi~~~~ 142 (245)
.+.+|++||++||+.|.+|+ .+++..........+.+..
T Consensus 78 ~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~ 118 (257)
T PF10320_consen 78 IMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIF 118 (257)
T ss_pred HHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHH
Confidence 99999999999999999996 3444344433444444443
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.76 E-value=5.8e-09 Score=85.79 Aligned_cols=99 Identities=16% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHHHHhhceeeEEeeecccccCccccccceeeeecc--------------------------cC--ce-eechhhhHHH
Q psy7567 48 AFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF--------------------------KG--LK-YISFLSSWPT 98 (245)
Q Consensus 48 i~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l--------------------------~~--C~-~~~~~~~~~~ 98 (245)
+.++|++.|.++++.+.+.++++++... ++.+. .. .. +.+.......
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~----l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y 78 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGI----LCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCY 78 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHH----HHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHH
Confidence 3467999999999888765555554432 22111 00 12 2244555566
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCc--cccchHHHHHHHHHHHHHHHhhhHhhh
Q psy7567 99 QVSAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVT 150 (245)
Q Consensus 99 ~~S~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~Wi~~~~~~~p~~~~ 150 (245)
..+.++-.+||++|+.||..|.+|+ .+.+.+..+++++|+.++....+....
T Consensus 79 ~~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~ 132 (274)
T PF10328_consen 79 FIGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFP 132 (274)
T ss_pred HHHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhc
Confidence 6788999999999999999999874 688889999999999999777766554
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.60 E-value=2.8e-08 Score=83.46 Aligned_cols=171 Identities=14% Similarity=0.150 Sum_probs=104.9
Q ss_pred HHHHHHhhceeeEEeeecccccCcc-cccc---------------------ceeeeecccCce------------eechh
Q psy7567 48 AFFVKLLQKSLSKDGSSTKSKRKSS-FDHK---------------------GFVLLKNFKGLK------------YISFL 93 (245)
Q Consensus 48 i~ivg~~gN~lvi~v~~~~~~~~~~-~~~~---------------------~~~l~~~l~~C~------------~~~~~ 93 (245)
+.++|+++|++-+.++.+ |..|++ .+.. .+........|. +...+
T Consensus 6 ~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 456899999999999854 444443 3321 000000012342 33345
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcCCCCc----cccchHHHHHHHHHHHHHHHhhhHhhhccccccCC--Cccccccee
Q psy7567 94 SSWPTQVSAYTLVAISIDRYMAIMWPLRPR----MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPND--TFYEFCEFY 167 (245)
Q Consensus 94 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~----~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~--~~~~~c~~~ 167 (245)
...+-.+|.+..++||+.|++++.+|.+.+ .+++.+...+..+.+.+.+...+.+...+....++ .+...|...
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~ 164 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGF 164 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeec
Confidence 556788899999999999999999999863 47788888888899999999999887766553211 111223311
Q ss_pred e---ecCCCC---Ch-------hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcc
Q psy7567 168 I---CGEDWE---DP-------EMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAE 219 (245)
Q Consensus 168 ~---C~~~~~---~~-------~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~ 219 (245)
. -.+.+. ++ .....+...-.++.-++|.++..+......+.+|+.++++++.
T Consensus 165 ~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~ 229 (318)
T PF10324_consen 165 PENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKL 229 (318)
T ss_pred cccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcc
Confidence 0 000000 00 0111223223344467899999999999999998877655443
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.36 E-value=9.3e-08 Score=79.65 Aligned_cols=194 Identities=10% Similarity=0.110 Sum_probs=107.5
Q ss_pred hhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc---------------------------cCceeechhh
Q psy7567 42 QNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF---------------------------KGLKYISFLS 94 (245)
Q Consensus 42 ~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l---------------------------~~C~~~~~~~ 94 (245)
.++..+.+++|++||+.++.+.+.+-.++++....+.++.... ..++...++.
T Consensus 10 ~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (303)
T PF05296_consen 10 LIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIIDFLW 89 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHH
Confidence 5667788899999999999888764444443322111111111 2355555666
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcCCCC-----cc-ccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceee
Q psy7567 95 SWPTQVSAYTLVAISIDRYMAIMWPLRP-----RM-SKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYI 168 (245)
Q Consensus 95 ~~~~~~S~~~l~~isidRy~aI~~P~~~-----~~-~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~ 168 (245)
.+....|.+.-+++++-=++-|.+.-+. |+ =.+-...++...++.+++..++............. ...++...
T Consensus 90 ~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~~~-~~~~~N~t 168 (303)
T PF05296_consen 90 MFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINNNN-TNNSRNST 168 (303)
T ss_pred HHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccc-ccCCCcce
Confidence 6677889999999999777777765543 11 11223334556666666333333333332211110 01111111
Q ss_pred ecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcchh-HHHHHHHhhhhhhceee
Q psy7567 169 CGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQ-RDRRMAKSKRKKIPKCQ 238 (245)
Q Consensus 169 C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~-~~~~~~~~~~k~~~~~~ 238 (245)
.. ...+..+..+......+...+|+.+++++-..+...++||.++.+...+ .+..+.++..|+.|++.
T Consensus 169 ~~--~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~ 237 (303)
T PF05296_consen 169 SN--FQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMI 237 (303)
T ss_pred EE--eecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHH
Confidence 11 1112223334444445788899999999999999999998776554322 22233344455555543
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.25 E-value=6e-07 Score=74.14 Aligned_cols=138 Identities=17% Similarity=0.305 Sum_probs=86.5
Q ss_pred eeechhhhHHHHHHHHHHHHHHHHHhhhhhcCC-CC--ccccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCccccc
Q psy7567 88 KYISFLSSWPTQVSAYTLVAISIDRYMAIMWPL-RP--RMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFC 164 (245)
Q Consensus 88 ~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~-~~--~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c 164 (245)
++.....+.....-....+.+|+.||.||++|. ++ ..++.+.+.++++-|+.+++.++|.+...+...+..++
T Consensus 76 ~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~---- 151 (283)
T PF10323_consen 76 AIYYNIAYYFLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEEN---- 151 (283)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccc----
Confidence 444455566677778889999999999999999 54 35777888889999999999999977665554332211
Q ss_pred ceeeecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHhhhhhhceee
Q psy7567 165 EFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRKKIPKCQ 238 (245)
Q Consensus 165 ~~~~C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 238 (245)
.....+++.-..... .......+-.+...++|..+...+|++.+ .++++..++.++|.+......
T Consensus 152 -----~~~~~d~~~~~~~~~-~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k---~~s~~~s~~~~rE~~L~~~~~ 216 (283)
T PF10323_consen 152 -----MSLFVDPEFIQRNFL-IAFIFVSVTCVICIVCYGIIFIFIRKRNK---KKSKSSSRSRRREIRLAIQVF 216 (283)
T ss_pred -----eeeecCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHhhhhhhhHhHHHHHHHH
Confidence 111112221111222 22233334455678999999999987663 223334444455555544443
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.66 E-value=6.9e-05 Score=62.26 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhceeeEEeeecccccCccccccceee--------------------eecccCceeechhhhHHHHHHHH
Q psy7567 44 SRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVL--------------------LKNFKGLKYISFLSSWPTQVSAY 103 (245)
Q Consensus 44 ~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l--------------------~~~l~~C~~~~~~~~~~~~~S~~ 103 (245)
+..+..+++++|-++++..+...++.++.......++ ..+...|++++++...+..++.+
T Consensus 12 i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~~~~~~~s~lC~~Qafliq~f~~as~l 91 (303)
T PF05462_consen 12 IELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLSPSAGENSFLCQFQAFLIQFFMLASFL 91 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHhHHHHHhhHHHHH
Confidence 3344455677888888877766555444433210000 01115799999999999999998
Q ss_pred HHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhh
Q psy7567 104 TLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFV 149 (245)
Q Consensus 104 ~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~ 149 (245)
=.++||++=|+.++++... ..+.-..-.+++|.+.++.++.++.
T Consensus 92 Wt~~iA~nly~~~~~~~~~--~~k~e~~Y~l~~wGiPli~a~i~l~ 135 (303)
T PF05462_consen 92 WTLCIAFNLYLTFVKRYDE--LEKLEKYYHLVCWGIPLIPAVIPLI 135 (303)
T ss_pred HHHHHHHHhhheeEEcCcc--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999875432 3344455678899999988776654
No 16
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.61 E-value=8.2e-05 Score=60.38 Aligned_cols=154 Identities=9% Similarity=0.091 Sum_probs=94.3
Q ss_pred ccCceeechhhhHHHHHHHHHHHHHHHHHhhhhh-cCCCC-----c-cccchHHHHHHHHHHHHHHHhhhHhhhcccccc
Q psy7567 84 FKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIM-WPLRP-----R-MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIP 156 (245)
Q Consensus 84 l~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~-~P~~~-----~-~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~ 156 (245)
..+||+..|+.-++-..|+-+.+.+|+ |+||. -|-.. | +.++.....+...|++-.++.....+......+
T Consensus 45 d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n 122 (265)
T PF03402_consen 45 DIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPN 122 (265)
T ss_pred CceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCc
Confidence 368999999999999999999999999 66666 34332 2 466667777888999988777654333221111
Q ss_pred CCCcccccceeeecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCc-chhHHHHHHHhhhhhhc
Q psy7567 157 NDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEA-ENQRDRRMAKSKRKKIP 235 (245)
Q Consensus 157 ~~~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~-~~~~~~~~~~~~~k~~~ 235 (245)
...+........|.....+......+. ....+--++.+..|..+-+.|...+.||+++.+. ++.....+...|.|+++
T Consensus 123 ~t~~~~~~~~~yCs~~~~~~~~~~~~~-~~~~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtk 201 (265)
T PF03402_consen 123 STNNNFTYSLGYCSSVPISYIVSSLFA-TLLSFRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATK 201 (265)
T ss_pred cccCceeecCCeEEEEecchhhhhhhh-hHHHhhHHHHHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhC
Confidence 111111111234654333332222222 2233444566778888888899999998877554 33333334456677777
Q ss_pred eeeee
Q psy7567 236 KCQIL 240 (245)
Q Consensus 236 ~~~ii 240 (245)
+++++
T Consensus 202 tILlL 206 (265)
T PF03402_consen 202 TILLL 206 (265)
T ss_pred eEeeH
Confidence 76554
No 17
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=96.98 E-value=0.015 Score=45.45 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=70.1
Q ss_pred cCceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCC----Cc-------cccchHHHHHHHHHHHHHHHhhhHhhhccc
Q psy7567 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR----PR-------MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQ 153 (245)
Q Consensus 85 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~----~~-------~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~ 153 (245)
..|...+++...+..++-+...+||+.-|+.|.+|-. .+ ..+........+.|+....++... ....
T Consensus 72 ~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~--~~~~ 149 (201)
T PF11710_consen 72 PFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG--LGGP 149 (201)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhc--cccC
Confidence 6799999999999999999999999999999999921 11 111222333334454443333222 0111
Q ss_pred cccCCCcccccceeeecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCC
Q psy7567 154 TIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQP 214 (245)
Q Consensus 154 ~~~~~~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~ 214 (245)
.+. .....|..+...+. +.+...-+.-.+-...+++.|+.++..+|++.+
T Consensus 150 ~Y~-------~~g~WCWi~~~~~~----~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 150 GYG-------PAGAWCWIPSRYEW----YRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred ccc-------ccCcEEEECCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 111 12356765554432 222222233345566678899999999987654
No 18
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=96.60 E-value=0.021 Score=48.25 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=39.5
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc-cccchHHHHHHHHHHHHHH
Q psy7567 87 LKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR-MSKGHAKFVIVTIWLTAMV 142 (245)
Q Consensus 87 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~Wi~~~~ 142 (245)
|-.......++...+..+..++++||++|-++.-+|- .++.-...+..+-|+.++.
T Consensus 96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~ 152 (324)
T PF10292_consen 96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLL 152 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 6566667777888999999999999999999988874 3333333444444554444
No 19
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.23 E-value=0.018 Score=47.82 Aligned_cols=104 Identities=12% Similarity=0.147 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhhceeeEEeeecccccCcccccc----------------------------ceeeeecccCceeec---
Q psy7567 43 NSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHK----------------------------GFVLLKNFKGLKYIS--- 91 (245)
Q Consensus 43 ~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~----------------------------~~~l~~~l~~C~~~~--- 91 (245)
.++.+.+++|++.|.+.++...++..+.-+.... ...+... +.|+..+
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~-GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISY-GPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEee-ecceecCcHH
Confidence 3567788899999999998886532221111110 0000000 3455554
Q ss_pred -----hhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhh
Q psy7567 92 -----FLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVT 150 (245)
Q Consensus 92 -----~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~ 150 (245)
.+...+...|.+++..--.-||..+.++-. ++++....+.+.+..++...+.....
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~---~~~~~i~~~~l~~~p~~~~~i~~~~~ 142 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP---SRKRIIFICILIYIPSFSMLIFFFFS 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445667788888888899999987544 55666777777777777776655443
No 20
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=95.77 E-value=0.01 Score=49.56 Aligned_cols=38 Identities=5% Similarity=0.120 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCC
Q psy7567 178 MKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPP 215 (245)
Q Consensus 178 ~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~ 215 (245)
+..............+...++++|-.++.+++++.++.
T Consensus 192 ~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~ 229 (307)
T PF10326_consen 192 WPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSI 229 (307)
T ss_pred hhhheeeeecchhHHhHHHHHHHHHhhhHHHHhccccc
Confidence 33334444455556789999999999999999655443
No 21
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=95.55 E-value=0.022 Score=46.71 Aligned_cols=63 Identities=22% Similarity=0.430 Sum_probs=42.3
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc-cccchHHHHHHHHHHHHHHHhhhHhh
Q psy7567 87 LKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR-MSKGHAKFVIVTIWLTAMVTAVPVFV 149 (245)
Q Consensus 87 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~Wi~~~~~~~p~~~ 149 (245)
.++..++.+.+..+-..+-+.||++|+-+|..|.++. .-++....+++++.+..+....+.+.
T Consensus 81 l~~~~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~ 144 (275)
T PF02118_consen 81 LNIFYFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFI 144 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHc
Confidence 4445566677788888899999999999999999984 33344444555555555544433333
No 22
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=95.47 E-value=0.2 Score=41.13 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCc
Q psy7567 98 TQVSAYTLVAISIDRYMAIMWPLRPR 123 (245)
Q Consensus 98 ~~~S~~~l~~isidRy~aI~~P~~~~ 123 (245)
..+.......||+||-.|+..|..|+
T Consensus 92 ~~iR~~l~~~Ia~dR~~A~~fPI~y~ 117 (273)
T PF10316_consen 92 GSIRSILALIIALDRVFAVYFPIFYH 117 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45566777899999999999999874
No 23
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=95.35 E-value=0.007 Score=48.65 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhhc
Q psy7567 87 LKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTT 151 (245)
Q Consensus 87 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~ 151 (245)
|.....+...+..++..=+.++++|=|..+.++... .+++........|...++.........
T Consensus 72 C~~~a~~~hy~~la~f~Wm~~~~~~l~~~~~~~~~~--~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 72 CRAIAILLHYFFLASFFWMLVEAFYLYRLLVKVFNS--SRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp -----------------------------------------------------------------
T ss_pred chhhhhHhHHHHHHHHHHHHHHHHHhheeEEEeecc--cchhhheeeeeeecCcceeeeeeeeec
Confidence 999999999999999888899999999999877432 244555666778988877777665544
No 24
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=94.97 E-value=0.052 Score=45.49 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=58.1
Q ss_pred cCceeechhhhH------HHHHHHHHHHHHHHHHhhhhhcCCCCc--cccchHHHH--HHHHHHH-HHHHhhhHhhhccc
Q psy7567 85 KGLKYISFLSSW------PTQVSAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFV--IVTIWLT-AMVTAVPVFVTTGQ 153 (245)
Q Consensus 85 ~~C~~~~~~~~~------~~~~S~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~--i~~~Wi~-~~~~~~p~~~~~~~ 153 (245)
..|+.-.+.... +=.++...-..++++|..-+..|.... ..++++... +.+++.. +.++ .||..+...
T Consensus 98 vfC~~P~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~f-T~pv~Fns~ 176 (313)
T PF10321_consen 98 VFCSYPRFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFF-TPPVLFNSE 176 (313)
T ss_pred cccCCchHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHH-cCcccCCCC
Confidence 446554443332 234566677789999999998876542 344443333 3333333 3333 344332211
Q ss_pred cccCCCcccccceeeecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCC
Q psy7567 154 TIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPG 216 (245)
Q Consensus 154 ~~~~~~~~~~c~~~~C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~ 216 (245)
.. ...-|.. ..+..+++ .|.-.......++-.+.+.++|..+...++++++..
T Consensus 177 ~~-----sw~fDP~--i~~g~~~~---~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~ 229 (313)
T PF10321_consen 177 YM-----SWFFDPM--IFEGKSPE---LYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS 229 (313)
T ss_pred cc-----eEecCcc--ccCCCCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 10 0000000 00001111 133222333344446667888998888888775543
No 25
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=94.64 E-value=0.079 Score=44.27 Aligned_cols=172 Identities=13% Similarity=0.008 Sum_probs=84.5
Q ss_pred eeeeehhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc-----------------------------cCc
Q psy7567 37 KQEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF-----------------------------KGL 87 (245)
Q Consensus 37 ~~~~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l-----------------------------~~C 87 (245)
.+.+....|-++.++.++-|.+.++.+..+.++-....- .++.-- ..|
T Consensus 7 ~P~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry---~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~ 83 (303)
T PF10327_consen 7 TPQWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRY---YLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLA 83 (303)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhh---HHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehh
Confidence 344556778889999999999999888775443222211 110000 224
Q ss_pred ee-------echhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc-cccchHHHHHHHHHHHHHHHhhhHhhhccccccC--
Q psy7567 88 KY-------ISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR-MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN-- 157 (245)
Q Consensus 88 ~~-------~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~-- 157 (245)
+. ...+.......-+-.++.--+-|+.+|.+..+.. ..+..-........+......... ...+...++
T Consensus 84 ~~f~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~-~~~~~s~eeq~ 162 (303)
T PF10327_consen 84 RYFGISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICF-YFSGMSREEQM 162 (303)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHH-HhcCCCHHHHH
Confidence 43 1112222333334455555678899999988764 333333333333333333333222 222211110
Q ss_pred -CCcccccceeeecCCC---------CChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCC
Q psy7567 158 -DTFYEFCEFYICGEDW---------EDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPG 216 (245)
Q Consensus 158 -~~~~~~c~~~~C~~~~---------~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~ 216 (245)
..++.+++ |.... +.+.+ ........+.+...-.....+++..+.+.+++.+++.
T Consensus 163 ~yI~~nyP~---~~~~F~~l~nf~iY~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i 227 (303)
T PF10327_consen 163 EYIRENYPE---YLSWFSSLPNFAIYDFNPW-FIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI 227 (303)
T ss_pred HHHHhhCCc---hhHHHhcCCCEEEEeChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00001111 11111 11222 2233344455566677778888999999887665543
No 26
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=93.63 E-value=0.5 Score=39.52 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=69.5
Q ss_pred eeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc-cccchHHHHHHHHHHHHHHHhhhHhhhccc--cccCCCccccc
Q psy7567 88 KYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR-MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQ--TIPNDTFYEFC 164 (245)
Q Consensus 88 ~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~--~~~~~~~~~~c 164 (245)
++..++.+.+.+.+.+.-...++-|-..+..|.+++ ..++-.....-++.+.+++.+.|.+...+. ..+++-+.+
T Consensus 104 k~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fG-- 181 (307)
T PF10322_consen 104 KILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFG-- 181 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCC--
Confidence 455567777889999999999999999999999874 444444555666777777777776655442 111111000
Q ss_pred ceee-ecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q psy7567 165 EFYI-CGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQ 213 (245)
Q Consensus 165 ~~~~-C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~ 213 (245)
.... -...+.+.. ..... +.....-...+++.+..+.+++|+.+
T Consensus 182 AI~I~~~~~~~~~~----~~~~~-l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 182 AIIITSTGSWFNIR----NSIFH-LFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred EEEEEEEcccccch----hhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 112222211 12222 22233334556678888888888765
No 27
>PF13853 7tm_4: Olfactory receptor
Probab=92.80 E-value=0.0061 Score=45.05 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhhHhhhcc-ccccCCCcccccce----eeecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy7567 130 KFVIVTIWLTAMVTAVPVFVTTG-QTIPNDTFYEFCEF----YICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTS 204 (245)
Q Consensus 130 ~~~i~~~Wi~~~~~~~p~~~~~~-~~~~~~~~~~~c~~----~~C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~ 204 (245)
..+....|+.+++..++...... ....+..++..|+. ..|.+...++ .+...........|+.+++++|.+
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~----~~~~~~~~~~~~~~~~~Il~SY~~ 79 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINE----IVGFVVAIFILLGPLLLILFSYIR 79 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhh----eeeecccceeEEEEeeccccceeE
Confidence 34566788888887777664432 22223344455552 3566544333 344455556677999999999999
Q ss_pred HHHHHhcCCC
Q psy7567 205 IAIVVWGKQP 214 (245)
Q Consensus 205 I~~~l~~~~~ 214 (245)
|.+++.|.+.
T Consensus 80 Il~avlki~S 89 (144)
T PF13853_consen 80 ILRAVLKIPS 89 (144)
T ss_pred EEehhhcccc
Confidence 9998876544
No 28
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=92.30 E-value=0.52 Score=39.17 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=40.2
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhhc
Q psy7567 87 LKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTT 151 (245)
Q Consensus 87 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~ 151 (245)
.....++..........++..+=-.||.++..+.+...+++........-++.+.....|.....
T Consensus 85 ~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~ 149 (302)
T PF10318_consen 85 TPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSRSLWKKIRIIFIIFNYIIAFLFFIPIYLSI 149 (302)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555566666667777888888999999996644222223233344455666666666666543
No 29
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.28 E-value=3.5 Score=34.91 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=34.3
Q ss_pred cCceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q psy7567 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR 123 (245)
Q Consensus 85 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~ 123 (245)
..|.........+....++.-+++.+||-+|-..|-.++
T Consensus 99 ~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 99 SECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred CceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 679999999998888899999999999999998886553
No 30
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=91.17 E-value=0.53 Score=34.96 Aligned_cols=61 Identities=10% Similarity=0.270 Sum_probs=48.3
Q ss_pred echhhhHHHHHHHHHHHHHHHHHhhhhhcCCCC--ccccchHHHHHHHHHHHHHHHhhhHhhh
Q psy7567 90 ISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRP--RMSKGHAKFVIVTIWLTAMVTAVPVFVT 150 (245)
Q Consensus 90 ~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~--~~~~~~~~~~i~~~Wi~~~~~~~p~~~~ 150 (245)
...+..++.....+.-..|+++|-..|.+|.+. ..+.+|.+.-+.+..+..+..-+.|.+.
T Consensus 47 ~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S 109 (153)
T PF03383_consen 47 VTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFS 109 (153)
T ss_pred EeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCC
Confidence 444556667777888889999999999999998 5899999998888777777666655544
No 31
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=90.22 E-value=5.6 Score=31.76 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=32.1
Q ss_pred cCceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc
Q psy7567 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR 123 (245)
Q Consensus 85 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~ 123 (245)
..+|.......+.+..+.+.-..+++||+.|....-+|.
T Consensus 83 ~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE 121 (236)
T PF02175_consen 83 TLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYE 121 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 456666677777888999999999999999999866664
No 32
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=89.76 E-value=2.2 Score=36.48 Aligned_cols=59 Identities=8% Similarity=0.045 Sum_probs=35.7
Q ss_pred ceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhh
Q psy7567 87 LKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFV 149 (245)
Q Consensus 87 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~ 149 (245)
|.....-..++..++-+=..+-|+|=|+.+.+.- ...+.+.-=..+|..+.++..-...
T Consensus 116 Cv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~a----g~~~~~lYH~~aWgl~~lL~~~Gl~ 174 (405)
T PF02101_consen 116 CVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSA----GRSTIWLYHMMAWGLPALLCAEGLA 174 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccC----CCcchhHHHHHHHHHHHHHHHhccc
Confidence 5554433334556666666678999999875311 1122344456799998888776543
No 33
>KOG4193|consensus
Probab=81.57 E-value=4.5 Score=37.25 Aligned_cols=64 Identities=8% Similarity=0.022 Sum_probs=45.5
Q ss_pred CceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhh
Q psy7567 86 GLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVT 150 (245)
Q Consensus 86 ~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~ 150 (245)
.|+...++..++..+..+=|..+++.=|..++.-.+. ...++........|...+++.......
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~-~~~~~~l~~~~~gwg~Pavvv~Isa~~ 448 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRS-RPRRRKLLYSLYGWGVPAVVVGVSALV 448 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHhhhhHHHHhheeEE
Confidence 6999999999999999888888998888865543332 244445555468998876666554443
No 34
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=79.84 E-value=38 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=27.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccc
Q psy7567 91 SFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKG 127 (245)
Q Consensus 91 ~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~ 127 (245)
+++.+-.++...+.+.++++||..|-...-.|-.++|
T Consensus 127 ~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R 163 (365)
T PF03125_consen 127 GFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSR 163 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4455555666688999999999999998777744444
No 35
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=79.67 E-value=33 Score=28.26 Aligned_cols=113 Identities=15% Similarity=0.312 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcCCCC---c-cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceee
Q psy7567 93 LSSWPTQVSAYTLVAISIDRYMAIMWPLRP---R-MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYI 168 (245)
Q Consensus 93 ~~~~~~~~S~~~l~~isidRy~aI~~P~~~---~-~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~ 168 (245)
.--++-++-.++-..||+.|....- +|+ + ..+.....=+..+|++++.......-.--.+. .+. ........
T Consensus 96 ~idf~h~siLfsNlviaIqR~fVFF--fr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~-y~~-~~~~y~L~ 171 (305)
T PF04789_consen 96 LIDFCHYSILFSNLVIAIQRFFVFF--FRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYR-YNK-WSKHYQLN 171 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeee--ehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeee-ccc-ccccEEEE
Confidence 3334555667788899999976554 232 1 34445555667788888766655443322121 111 11123345
Q ss_pred ecCCCC--ChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy7567 169 CGEDWE--DPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVW 210 (245)
Q Consensus 169 C~~~~~--~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~ 210 (245)
|..... +.+........-.++.+.+|..+. ..|+.+..++-
T Consensus 172 C~~~~~~v~~~~P~~IqiiE~ilQ~~IPi~Il-~iYiAIIiKI~ 214 (305)
T PF04789_consen 172 CETCNSVVDISPPRGIQIIEIILQFGIPIFIL-VIYIAIIIKII 214 (305)
T ss_pred cCCCCeeEeeCCCCchhHHHHHHHHhHHHHHH-HHHHHHHHHHH
Confidence 654311 111111244466777899999864 56666555543
No 36
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=77.74 E-value=9.2 Score=29.94 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=24.9
Q ss_pred cCceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCC
Q psy7567 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR 121 (245)
Q Consensus 85 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~ 121 (245)
..|.+..-+......+.-...+++|+|||+.|+.-.|
T Consensus 115 ~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 115 FVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 4587777655555544444555899999999985333
No 37
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=69.57 E-value=59 Score=26.35 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc---cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeee
Q psy7567 93 LSSWPTQVSAYTLVAISIDRYMAIMWPLRPR---MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYIC 169 (245)
Q Consensus 93 ~~~~~~~~S~~~l~~isidRy~aI~~P~~~~---~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C 169 (245)
.......+--+.+..+|++|+.---.|-..+ .+++.....+........+-.+...........++. +
T Consensus 88 ~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~~~---------~ 158 (267)
T PF10325_consen 88 ILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNNES---------T 158 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------c
Confidence 3344455556678899999999999998532 455555544444444444333332222211110000 0
Q ss_pred cCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q psy7567 170 GEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRR 225 (245)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~ 225 (245)
.. .+.... +......... +-+.+....|.-|...+||.++-...+.++.++
T Consensus 159 ~~---~~~~~~-~~~~~~~~~~-~ll~~S~lLYIPI~isirK~~~l~s~~~n~pqk 209 (267)
T PF10325_consen 159 EE---IETFSY-IYVIFYIILN-ILLFLSALLYIPIFISIRKLSHLPSAQKNKPQK 209 (267)
T ss_pred hh---hhHHHH-HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhhccCccccCcHHH
Confidence 00 011111 2222222223 335556789999999998877544443333333
No 38
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=63.12 E-value=95 Score=26.39 Aligned_cols=85 Identities=9% Similarity=0.120 Sum_probs=58.9
Q ss_pred cCceeechhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCccccc
Q psy7567 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFC 164 (245)
Q Consensus 85 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c 164 (245)
..|.+...+.+.+..++..=-+.+++.=|++......+..-.+.....=.++|.+.++..+........+.++
T Consensus 92 ~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~------- 164 (328)
T PF01534_consen 92 SSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVDGDE------- 164 (328)
T ss_pred CchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcchhhhhcchhhhHHhhhhHHHHHHHHHhccccccc-------
Confidence 6799999999998888877666778777888765444322334455556789999999888877776655332
Q ss_pred ceeeecCCCCCh
Q psy7567 165 EFYICGEDWEDP 176 (245)
Q Consensus 165 ~~~~C~~~~~~~ 176 (245)
-.+.|.....+.
T Consensus 165 ltGiC~Vg~~~~ 176 (328)
T PF01534_consen 165 LTGICFVGNQNP 176 (328)
T ss_pred ccceeEEeCCCH
Confidence 234577666554
No 39
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=47.75 E-value=1.6e+02 Score=24.39 Aligned_cols=67 Identities=6% Similarity=-0.025 Sum_probs=38.6
Q ss_pred cCceeechhhhHHHHHHHHHHHHHHHHHhhhhh-cCCCCc----cccchHHHHHHHHHHHHHHHhhhHhhhccc
Q psy7567 85 KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIM-WPLRPR----MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQ 153 (245)
Q Consensus 85 ~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~-~P~~~~----~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~ 153 (245)
..|.+...+....... ...+..++-|.++-. .+-+.. .++|+...=..+++...++......+.+..
T Consensus 57 ~wCDI~~kl~~~~~~g--~~~a~lcI~r~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~ 128 (283)
T PF02076_consen 57 VWCDISTKLIIGSSVG--IPAASLCIMRRLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQGH 128 (283)
T ss_pred eeeeehHHHHHHHHHH--HHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4588888776655444 444555555655433 332222 235566666677777777666666665554
No 40
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=40.59 E-value=57 Score=20.84 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhHHHHH-HHHHHHHHHHHhcCC
Q psy7567 182 YSILVAMLQYGVPLVVL-VFTYTSIAIVVWGKQ 213 (245)
Q Consensus 182 ~~~~~~~~~f~lP~~ii-~~~y~~I~~~l~~~~ 213 (245)
|.++..++.-+.|++++ .++-++..+.+.++.
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~e 52 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEE 52 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556676654 455666667665443
No 41
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=39.47 E-value=10 Score=22.85 Aligned_cols=17 Identities=0% Similarity=-0.048 Sum_probs=10.6
Q ss_pred HHHHHHHH-hhceeeEEe
Q psy7567 46 GVAFFVKL-LQKSLSKDG 62 (245)
Q Consensus 46 ~vi~ivg~-~gN~lvi~v 62 (245)
+++.++|+ +||++++--
T Consensus 8 IIviVlgvIigNia~LK~ 25 (55)
T PF11446_consen 8 IIVIVLGVIIGNIAALKY 25 (55)
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 44445554 799988743
No 42
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=39.18 E-value=11 Score=30.96 Aligned_cols=20 Identities=15% Similarity=0.090 Sum_probs=13.3
Q ss_pred ehhhHHHHHHHHHhhceeeE
Q psy7567 41 KQNSRGVAFFVKLLQKSLSK 60 (245)
Q Consensus 41 ~~~~~~vi~ivg~~gN~lvi 60 (245)
..+.+++++.++++-++..+
T Consensus 49 vGI~fav~f~i~lvltLvnL 68 (296)
T PF10361_consen 49 VGIAFAVLFAIALVLTLVNL 68 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777666554
No 43
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=34.71 E-value=43 Score=25.93 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHhhhhh---hceeeeeeccC
Q psy7567 178 MKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRKK---IPKCQILCYKN 244 (245)
Q Consensus 178 ~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~k~---~~~~~ii~~~~ 244 (245)
..........++.+.+.+..-...+..+.+..++.++..+++.+++.++.++..|. +....+++|+|
T Consensus 148 ~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P 217 (257)
T PF00001_consen 148 YFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLP 217 (257)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCc
Confidence 34445556666666777777777788888888776665444443333333333333 33345666654
No 44
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=31.06 E-value=1.3e+02 Score=21.35 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCC
Q psy7567 182 YSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQP 214 (245)
Q Consensus 182 ~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~ 214 (245)
......+++..+|...+....-++...+++.+.
T Consensus 18 ~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~ 50 (121)
T PF06695_consen 18 EAFLLAFLGNILPVPFILLFLDKILKWLKRKPW 50 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445566778888888888888888887766443
No 45
>PHA02909 hypothetical protein; Provisional
Probab=29.68 E-value=1.3e+02 Score=18.04 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy7567 182 YSILVAMLQYGVPLVVLVFTYTSIAIVV 209 (245)
Q Consensus 182 ~~~~~~~~~f~lP~~ii~~~y~~I~~~l 209 (245)
..+..+++.|+--+.+...+|..|...+
T Consensus 36 vsfilfviiflsmftilacsyvyiaiii 63 (72)
T PHA02909 36 VSFILFVIIFLSMFTILACSYVYIAIII 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666776665543
No 46
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=24.87 E-value=2.4e+02 Score=23.43 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q psy7567 98 TQVSAYTLVAISIDRYMAIMW 118 (245)
Q Consensus 98 ~~~S~~~l~~isidRy~aI~~ 118 (245)
...-++-++.+.+||++...-
T Consensus 50 ~~glvwgl~I~~lDR~ivss~ 70 (301)
T PF14362_consen 50 PFGLVWGLVIFNLDRFIVSSI 70 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344678899999999987753
No 47
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.33 E-value=10 Score=27.09 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=9.8
Q ss_pred HHHhhceeeEEeeecccccCc
Q psy7567 51 VKLLQKSLSKDGSSTKSKRKS 71 (245)
Q Consensus 51 vg~~gN~lvi~v~~~~~~~~~ 71 (245)
.|++|=++.|..+++|++++.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 466676665555544444443
No 48
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.41 E-value=1.7e+02 Score=22.71 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q psy7567 178 MKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQ 213 (245)
Q Consensus 178 ~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~ 213 (245)
..-.|..+...+..++|+.++.-++-.|.+..+..+
T Consensus 157 y~W~y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~ 192 (194)
T PF05241_consen 157 YFWFYFVFPNGIWIVVPLLLLYQSWKEIARAFRAAQ 192 (194)
T ss_pred hheeehhhcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333456677778889999999999999988876443
Done!