RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7567
(245 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 91.6 bits (228), Expect = 2e-22
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 100 VSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN 157
S L AISIDRY+AI+ PLR + AK +I+ +W+ A++ ++P + +
Sbjct: 64 ASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTV- 122
Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGE 217
E C D+ + K +Y++L +L + +PL+V++ YT I + K+
Sbjct: 123 ----EEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLR-KRARSG 177
Query: 218 AENQRDRRMAKSKRKK 233
A R +R + +RK
Sbjct: 178 ASQARAKRSSSKERKA 193
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 37.5 bits (87), Expect = 0.004
Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 88 KYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAV 145
K +S L S + +S+DRY+AI+ P++ + + V + IW+ +++
Sbjct: 112 KIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETT 171
Query: 146 PVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
P+ ++T + +W K + + ++ +PL +L++ Y+ I
Sbjct: 172 PILFVYTTKKDHETLICCMFYNNKTMNW-----KLFINFEINIIGMLIPLTILLYCYSKI 226
Query: 206 AIVVWGKQPPGEAENQRDRRMAKSKRKK 233
I + + + KSK+ K
Sbjct: 227 LITL--------------KGINKSKKNK 240
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 36.3 bits (84), Expect = 0.009
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 78 FVLLKNF-------KGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAK 130
F++L N G K+ S L V T+ I+ DRY I R R S +
Sbjct: 89 FIMLSNQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRST 148
Query: 131 FVIVTI-WLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKT---AYSILV 186
+ I+ + W +++ + P V T +D E + C + ++KT + +L+
Sbjct: 149 YKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTFKVLL 208
Query: 187 AMLQYGVPLVVLVFTYT 203
++ P+V++ + YT
Sbjct: 209 TLVWGIAPVVMMTWFYT 225
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 32.3 bits (73), Expect = 0.19
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 89 YISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTI--WLTAMVTAVP 146
YI F S+ + + +SIDRY AI++P+ + + +I+ I W+ +++ P
Sbjct: 176 YIGFFSN------MFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSP 229
Query: 147 ---VFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYG-------VPLV 196
+F + E Y C ++ K S L +LQ+ +P++
Sbjct: 230 AYFIFEASNIIFSAQDSNETISNYQCTLIEDN--EKNNISFLGRILQFEINILGMFIPII 287
Query: 197 VLVFTYTSI 205
+ F Y I
Sbjct: 288 IFAFCYIKI 296
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 31.9 bits (73), Expect = 0.29
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 13/52 (25%)
Query: 180 TAYSILVAMLQYGVPLVVLV--FTYTSIAIVVWGKQPPGEAENQRDRRMAKS 229
TA SI LQYGVPL V V F+ +P G ++ D R+AKS
Sbjct: 789 TAISI---GLQYGVPLEVYVSKFSNMRF-------EPAGMTDDP-DIRIAKS 829
>gnl|CDD|213410 cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated
protein Csn2. Csn2 is a Nmeni subtype-specific Cas
protein, which may function in the adaptation process
which mediates the incorporation of foreign nucleic
acids into the microbial host genome. Csn 2 may interact
directly with double-stranded DNA. This family of Csn2
proteins includes Stu0660, the proteins are larger than
other (canonical) Csn2 proteins as they have an
additional alpha-helical C-terminal domain. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA. Csn2 has been predicted to
be a functional analog of Cas4 based on anti-correlated
phyletic patterns; also known as SPy1049 family.
Length = 343
Score = 30.4 bits (69), Expect = 0.75
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 5 EYCLENVSWIIKRKVAYFAVYFYSGQQDNRTTKQEMKQNSRGVAFFVKLLQKSLSKDG 62
E + I+K + F +NR E N + + LL++ LS
Sbjct: 144 ESSVLTDQLILKNFLPVFY-------YNNRNISLEFVSNEEKLLELLNLLERLLSNST 194
>gnl|CDD|226198 COG3672, COG3672, Predicted transglutaminase-like cysteine
proteinase [General function prediction only].
Length = 191
Score = 29.2 bits (66), Expect = 1.2
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 118 WPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFC 164
+ R + A A +A P T GQT Y+FC
Sbjct: 1 MKKKARFASLAAAAAGALAAAAAPASAAPSMATGGQTSQPIGHYDFC 47
>gnl|CDD|163640 cd07397, MPP_DevT, Myxococcus xanthus DevT and related proteins,
metallophosphatase domain. DevT is a component in the
C-signal response pathway in Myxococcus xanthus that
stimulates the developmentally regulated expression of
the FruA response regulator protein and is required for
methylation of FrzCD during fruiting body formation.
DevT mutants having an in-frame deletion in the devT
gene, display delayed aggregation and a cell autonomous
sporulation defect. DevT belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 238
Score = 28.5 bits (64), Expect = 2.9
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 9/37 (24%)
Query: 168 ICGEDWE-------DPEMKTAYSILVAMLQYGVPLVV 197
CG DW+ DP++ A I VPLVV
Sbjct: 167 PCGRDWKPPGGDWGDPDLALA--ISQIQQGRQVPLVV 201
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 28.8 bits (65), Expect = 3.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 178 MKTAYSILVAM-LQYGVPLVVLV--FTYT 203
+ ++I V++ LQYGVPL V FT+T
Sbjct: 1018 LMNNFAIAVSLGLQYGVPLEEYVDAFTFT 1046
>gnl|CDD|184810 PRK14747, PRK14747, cytochrome b6-f complex subunit PetN;
Provisional.
Length = 29
Score = 24.8 bits (54), Expect = 6.4
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 186 VAMLQYGVPLVVLVFTYTSIAIVVWGK 212
+ +L G V+++FT+ SIA+VVWG+
Sbjct: 1 MDILTLGWVSVLVLFTW-SIAMVVWGR 26
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 27.0 bits (60), Expect = 7.8
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 107 AISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEF 166
A+S R + ++ LR ++ A+ + + T P+ + IP YE E
Sbjct: 158 ALSPSRQLELLAILR-DLADSGAQII--------IATHSPILLA----IPGAEIYEISES 204
Query: 167 YICGEDWEDPE 177
I D+E+ E
Sbjct: 205 GIEERDFEETE 215
>gnl|CDD|232833 TIGR00118, acolac_lg, acetolactate synthase, large subunit,
biosynthetic type. Two groups of proteins form
acetolactate from two molecules of pyruvate. The type of
acetolactate synthase described in this model also
catalyzes the formation of acetohydroxybutyrate from
pyruvate and 2-oxobutyrate, an early step in the
branched chain amino acid biosynthesis; it is therefore
also termed acetohydroxyacid synthase. In bacteria, this
catalytic chain is associated with a smaller regulatory
chain in an alpha2/beta2 heterotetramer. Acetolactate
synthase is a thiamine pyrophosphate enzyme. In this
type, FAD and Mg++ are also found. Several isozymes of
this enzyme are found in E. coli K12, one of which
contains a frameshift in the large subunit gene and is
not expressed [Amino acid biosynthesis, Pyruvate
family].
Length = 558
Score = 27.0 bits (60), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 133 IVTIWLTAMVTAVPVFVTTGQT----IPNDTFYE 162
+VT TA + ++P+ V TGQ I +D F E
Sbjct: 79 LVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQE 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.135 0.415
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,063,493
Number of extensions: 1081973
Number of successful extensions: 963
Number of sequences better than 10.0: 1
Number of HSP's gapped: 961
Number of HSP's successfully gapped: 19
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (25.8 bits)