RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7567
(245 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 137 bits (348), Expect = 5e-39
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 88 KYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPV 147
K+ +F S Y++ A++ DRYMAI+ PL+PR+S K VI IW+ A++ A P
Sbjct: 106 KFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQ 165
Query: 148 FVTTGQTIPNDTFYEFCEFYICGEDW---EDPEMKTAYSILVAMLQYGVPLVVLVFTYTS 204
+ T +C +W + + Y I V +L Y +PL+V+ + YT
Sbjct: 166 GYYS-------TTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTV 218
Query: 205 IAIVVWGKQPPGEAENQRDRRMAKSKRK 232
+ I +W + PG++ + R +KRK
Sbjct: 219 VGITLWASEIPGDS-SDRYHEQVSAKRK 245
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 109 bits (274), Expect = 5e-28
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 88 KYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRM--SKGHAKFVIVTIWLTAMVTAV 145
K + + + S +TL A+S+DRY+AI P+R + A+ V V IW A V V
Sbjct: 198 KTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGV 257
Query: 146 PVFVTTGQTIPNDTFYEFCEFYICGEDWEDPE--MKTAYSILVAMLQYGVPLVVLVFTYT 203
PV + + ++ C + P+ ++I + + + VP++V+ Y+
Sbjct: 258 PVAIMGSAQVEDEEIE-------CLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYS 310
Query: 204 SIAIVVWGKQPPGEAENQRDRR 225
+ + G + + +
Sbjct: 311 LMIRRLRGVRLLSGSREKDRNL 332
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 102 bits (257), Expect = 5e-26
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 100 VSAYTLVAISIDRYMAIMWPLRP-RMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPND 158
++ ++LV ++I+RY+ + P+ R + HA + W+ A+ A P V + IP
Sbjct: 124 IALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG 183
Query: 159 TFYEFCEFYICGEDWEDPEMKT---AYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPP 215
CG D+ P +T ++ I + ++ + +PL+V+ F Y + V
Sbjct: 184 M------QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKE---- 233
Query: 216 GEAENQRDRRMAKSKRK 232
A+ Q K++++
Sbjct: 234 AAAQQQESATTQKAEKE 250
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 82.0 bits (202), Expect = 3e-18
Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 88 KYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRM--SKGHAKFVIVTIWLTAMVTAV 145
K + + + S +TL +S+DRY+A+ P++ + +AK V V W+ + +
Sbjct: 90 KIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGL 149
Query: 146 PVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEM--KTAYSILVAMLQYGVPLVVLVFTYT 203
PV + C + P + I V + + +P++++ Y
Sbjct: 150 PVMFMATTKYRQGS-------IDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYG 202
Query: 204 SIAIVVWGKQPPGEAENQRDRRMAKSKRKKIPKCQ 238
+ + + + R+ + R KI K
Sbjct: 203 LMILRLKSVRNI-----FEMLRIDEGLRLKIYKNT 232
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 79.6 bits (196), Expect = 3e-17
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 15/152 (9%)
Query: 77 GFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRM--SKGHAKFVIV 134
G L K + ++ SS + L IS+DRY+AI+ + K V V
Sbjct: 115 GNFLCKAVHVIYTVNLYSS------VWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV 168
Query: 135 TIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVP 194
+W+ A++ +P F+ + +D YIC + + + M+ +P
Sbjct: 169 GVWIPALLLTIPDFIFANVSEADDR-------YICDRFYPNDLWVVVFQFQHIMVGLILP 221
Query: 195 LVVLVFTYTSIAIVVWGKQPPGEAENQRDRRM 226
+V++ Y I + + D +
Sbjct: 222 GIVILSCYCIIISKLSHSGSNIFEMLRIDEGL 253
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 73.4 bits (180), Expect = 3e-15
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 100 VSAYTLVAISIDRYMAIMWPLRP--RMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN 157
+S T+ ISIDRY I P+ +MS A +I+ +WL +++ A+ G
Sbjct: 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE 180
Query: 158 DTFYEFCEFYICGEDWEDPEMKT-AYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPG 216
C D+ + T + + + +L + P++++ F Y +I + V
Sbjct: 181 GV------LCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSV--SNHEK 232
Query: 217 EAENQRDRRMAKSKRK 232
E R AK RK
Sbjct: 233 EMAAMAKRLNAKELRK 248
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 69.3 bits (169), Expect = 8e-14
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Query: 98 TQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAVPVFV---TTG 152
TQ S ++L+AI+IDRY+AI PLR ++ AK +I W+ + + + G
Sbjct: 113 TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG 172
Query: 153 QTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVW 210
Q + C +ED VPL++++ Y I +
Sbjct: 173 QPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAAR 230
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 66.3 bits (161), Expect = 8e-13
Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 100 VSAYTLVAISIDRYMAIMWPL--RPRMSKGHAKFVIVTIWLTAMVTAVPVFV---TTGQT 154
S +++ + IDRY ++ PL +K A I+ W + + +P+ QT
Sbjct: 94 ASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQT 153
Query: 155 IPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+FY T + ++ A++ + +P +++++ Y I
Sbjct: 154 SVRREDKCETDFY----------DVTWFKVMTAIINFYLPTLLMLWFYAKI 194
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 65.1 bits (158), Expect = 2e-12
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 98 TQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAVPVFV---TTG 152
TQ S ++L+AI+IDRY+AI PLR ++ AK +I W+ + + + G
Sbjct: 103 TQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCG 162
Query: 153 QTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
Q + C +ED VPL++++ Y I
Sbjct: 163 QPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRI 215
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 64.3 bits (156), Expect = 3e-12
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 15/111 (13%)
Query: 100 VSAYTLVAISIDRYMAIMWPL--RPRMSKGHAKFVIVTIWLTAMVTAVPVFV---TTGQT 154
S L+ IS DRY + PL + + A +I W+ + + P +
Sbjct: 109 ASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGV 168
Query: 155 IPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + +F+ + A + A+ + +P++++ Y I
Sbjct: 169 RTVEDGECYIQFF------SNA----AVTFGTAIAAFYLPVIIMTVLYWHI 209
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 60.9 bits (147), Expect = 6e-11
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 101 SAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPND 158
S TL I++DRY AI P + ++K A+ +I+ +W+ + +T+ +
Sbjct: 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ 186
Query: 159 TFYEF------CEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
C+F+ AY+I +++ + VPLV++VF Y+ +
Sbjct: 187 EAINCYAEETCCDFF----------TNQAYAIASSIVSFYVPLVIMVFVYSRV 229
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 60.1 bits (146), Expect = 7e-11
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 98 TQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAVPVFVTTG--- 152
S TL I+IDRY+AI P R M++ AK +I T+W + + + +
Sbjct: 95 VTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRD 154
Query: 153 ---QTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVV 209
Q + C+F AY+I +++ + +PL++++F +
Sbjct: 155 EDPQALKCYQDPGCCDFVT----------NRAYAIASSIISFYIPLLIMIFVALRVYREA 204
Query: 210 WGKQPPGEAENQRDRRMAKSKRKK 233
+ + ++R R+
Sbjct: 205 KEQIRKIDRASKRKTSRVMLMREH 228
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 59.2 bits (143), Expect = 2e-10
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 98 TQVSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTA-VPVFVTTGQT 154
S TL I++DRY AI P + ++K A+ +I+ +W+ + +T+ +P+ + +
Sbjct: 266 VTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRA 325
Query: 155 IPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
+ + E C Y+I +++ + VPLV++VF Y+ +
Sbjct: 326 THQEAINCYAEETCCDFFTNQA-----YAIASSIVSFYVPLVIMVFVYSRV 371
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 57.8 bits (139), Expect = 6e-10
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 101 SAYTLVAISIDRYMAIMWPLR-----PRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTI 155
S + L AISIDRY A++ P+ + S +I +W+ A + P+ T
Sbjct: 126 SIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG 185
Query: 156 PNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSI 205
C + I +++ + +P V V Y I
Sbjct: 186 DPTV----CSIS-----------NPDFVIYSSVVSFYLPFGVTVLVYARI 220
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 47.6 bits (112), Expect = 2e-06
Identities = 9/50 (18%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 98 TQVSAYTLVAISIDRYMAIMWPL-RPRMSKGHAKFVIVTIWLTAMVTAVP 146
S ++L+AI+I+RY+ ++ + +I W+ +++
Sbjct: 146 LSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGL 195
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 29.3 bits (66), Expect = 0.085
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 101 SAYTLVAISIDRYMAIMWPLR 121
S L AIS+DRY +I +
Sbjct: 3 SIVHLCAISLDRYWSITQAIE 23
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.10
Identities = 34/227 (14%), Positives = 66/227 (29%), Gaps = 82/227 (36%)
Query: 51 VKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYI------SFLSSWPTQVSAYT 104
+L+ K L S + + FD + L F+ Y+ + + +
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTL 116
Query: 105 LVAISIDR--YMAIMWPLRPRM-----------SKGHAKFVIVTIWLTAMVTAVPVFVTT 151
+ + + A + RP +G+A+ V +F
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-------------AIF--G 161
Query: 152 GQTIPNDTF------YE--------FCE------------------FYICGED---W-ED 175
GQ +D F Y+ + + G + W E+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 176 PEMK--TAY--SILVAMLQYGVPLVVLV-FTYTSIAIVVWGKQPPGE 217
P Y SI ++ PL+ ++ + + + G PGE
Sbjct: 222 PSNTPDKDYLLSIPISC-----PLIGVIQLAHYVVTAKLLGF-TPGE 262
Score = 29.2 bits (65), Expect = 1.4
Identities = 26/152 (17%), Positives = 42/152 (27%), Gaps = 52/152 (34%)
Query: 50 FVKLLQKSLSKDGSS-TK---SKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTL 105
L+K+ + G ++ S+RK F + FL P V++
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSN---------------RFL---P--VAS--- 425
Query: 106 VAISIDRYMAIMWP-----LRPRMSKGHAKFVIVTIWLTAMVTAVPVFVT-TG---QTIP 156
P L P + V + A +PV+ T G + +
Sbjct: 426 -------------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 157 NDTFYEFCEFYICGE--DWEDPEMKTAYSILV 186
+ I WE A IL
Sbjct: 473 GSISERIVDC-IIRLPVKWETTTQFKATHILD 503
>2idb_A 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: 1PE; 2.90A {Escherichia coli} SCOP: b.45.1.3
d.333.1.1
Length = 505
Score = 32.1 bits (73), Expect = 0.15
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 146 PVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEM--KTAYSILVAMLQYGVPLVVLVFTYT 203
PVF T T D Y G ++P + + V +LQ P +V +
Sbjct: 302 PVFTVTHITQREDAIYHST---YTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPP 358
Query: 204 S-----IAIVVWGKQPPGEAENQR 222
+A+V KQ G A+
Sbjct: 359 EGCSYRLAVVTIKKQYAGHAKRVM 382
>2k1o_A Putative; repressor, transcriptional regulator, D binding,
ribbon-helix-helix, HP0564, JHP0511, unknown funct
regulation; NMR {Helicobacter pylori}
Length = 66
Score = 27.1 bits (59), Expect = 1.2
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 22 FAVYFYSGQQDNRTTKQEMKQNSRGVAFFVK--LLQKSLSKDGSSTKS 67
F+V FY ++++ ++ + V FVK +L+ + K G++ S
Sbjct: 16 FSVTFYLSKEEHDVLRRLADEEVESVNSFVKRHILKTIIYKKGTNQDS 63
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 27.6 bits (60), Expect = 1.7
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 211 GKQPPGEAENQRDRRMAKSKRKKIPKCQILCYK 243
G PG E Q R + + P C ++ K
Sbjct: 4 GSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRK 36
>3op0_A Signal transduction protein CBL-C; structural genomics, structural
genomics consortium, SGC, SI transduction protein,
SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Length = 323
Score = 28.2 bits (62), Expect = 2.8
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 50 FVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAIS 109
F LL + +T +++ D + F+ + WPT + + L+A++
Sbjct: 168 FESLLGTCHPVEPGATALALRTTIDLTCSGHVSIFEFDVFTRLFQPWPTLLKNWQLLAVN 227
Query: 110 IDRYMAIM 117
YMA +
Sbjct: 228 HPGYMAFL 235
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 27.5 bits (61), Expect = 3.9
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 8/47 (17%)
Query: 7 CLENVSWIIKRK--------VAYFAVYFYSGQQDNRTTKQEMKQNSR 45
C + V WI+ + +A F Q ++ N R
Sbjct: 210 CTDTVDWIVFKDTVSISESQLAVFCEVLTMQQSGYVMLMDYLQNNFR 256
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 27.5 bits (61), Expect = 4.4
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 7 CLENVSWIIKRK--------VAYFAVYFYSGQQDNRTTKQEMKQNSR 45
C E V WI+ R+ + F F + QQD+ + + ++ N R
Sbjct: 210 CSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFR 256
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 26.8 bits (59), Expect = 5.2
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 184 ILVAMLQYGVPLVVLVFTYTSIAIVVWGKQ-PPGEAENQRDRRMAKSKRKKIPKCQILCY 242
+ VA + + + A++V+G Q P G+ + +++ + + CY
Sbjct: 132 VPVAPICTDKINAANYASVKTPALIVYGDQDPMGQTSFEHLKQLPNHRVLIMKGAGHPCY 191
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 6.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 13/30 (43%)
Query: 37 KQEMKQNSRGVAFFVKLLQKSLSK--DGSS 64
KQ +K+ LQ SL D S+
Sbjct: 19 KQALKK-----------LQASLKLYADDSA 37
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
cholerae o1 biovar el tor}
Length = 243
Score = 26.8 bits (60), Expect = 6.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 10/32 (31%)
Query: 165 EFYICGEDWEDPE--MKTAYSILVAMLQYGVP 194
+FY+CG P M+ L+A+ GV
Sbjct: 203 DFYLCG-----PIGFMQYVVKQLLAL---GVD 226
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.415
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,627,415
Number of extensions: 200669
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 30
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.8 bits)