RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7567
         (245 letters)



>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 239

 Score = 26.3 bits (57), Expect = 3.5
 Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 2/141 (1%)

Query: 45  RGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYT 104
           RG ++ ++   K L  D    K+     + + G+ L K       +  ++   ++   Y 
Sbjct: 12  RGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYN 71

Query: 105 LVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFC 164
              ++ D  +              A  +     L   V    +     + +      +  
Sbjct: 72  PDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDV--LAPAAIEEVITKKNADNI 129

Query: 165 EFYICGEDWEDPEMKTAYSIL 185
           +  I  E    P    A  IL
Sbjct: 130 KAKIVAEVANGPVTPEADEIL 150


>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
           isozyme IV [TaxId: 10090]}
          Length = 258

 Score = 25.6 bits (55), Expect = 5.7
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 7   CLENVSWIIKRKVAYFAVY----FYSGQQDNRTTKQEMKQNSRGV 47
           C E V W + ++           F      +   K  MK N R +
Sbjct: 201 CDETVIWTVYKQPIKIHKNQFLEFSKNLYYDEDQKLNMKDNVRPL 245


>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 361

 Score = 25.6 bits (56), Expect = 5.8
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 17/70 (24%)

Query: 130 KFVIVTIWLT---AMVTA--------------VPVFVTTGQTIPNDTFYEFCEFYICGED 172
                TI+L     ++++              V V VTT   +  D        Y+    
Sbjct: 85  PLTSCTIFLGYTSNLISSGIRETIRYLVQHNMVDVLVTTAGGVEEDLIKCLAPTYLGEFS 144

Query: 173 WEDPEMKTAY 182
               E++   
Sbjct: 145 LRGKELRENG 154


>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           isozyme IV [TaxId: 9606]}
          Length = 262

 Score = 25.2 bits (54), Expect = 7.0
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 7   CLENVSWIIKRKVAYFAVY----FYSGQQDNRTTKQEMKQNSRGV 47
           C E V W + R+           F      ++     MK N R +
Sbjct: 207 CDEKVVWTVFREPIQLHREQILAFSQKLYYDKEQTVSMKDNVRPL 251


>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f
           complex {Mastigocladus laminosus [TaxId: 83541]}
          Length = 27

 Score = 22.6 bits (48), Expect = 8.5
 Identities = 10/17 (58%), Positives = 16/17 (94%), Gaps = 1/17 (5%)

Query: 196 VVLVFTYTSIAIVVWGK 212
           +++VFT+ SIA+VVWG+
Sbjct: 9   LLVVFTW-SIAMVVWGR 24


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,721
Number of extensions: 38723
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 8
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.4 bits)