BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7568
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 16 VYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVS 75
+ +CWLP +I ++ P+L K+ +Y + WLAMS YNP+IYC +N RFR+
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 76 FYGVFRKVPILKHTVKKYDKSNLMSQAVLSDHMS 109
F FR P + + Y+ + S L S
Sbjct: 316 FKHAFRCCPFI--SAGDYEGLEMKSTRYLQTQGS 347
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 44.3 bits (103), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 7 IKMMVLVVIVYTVCWLP---LNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPV 63
+K + +++ +T+CWLP +NIV +I D NL + + +Y L++W+ + +NP+
Sbjct: 421 LKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NLIRKE----VYILLNWIGYVNSGFNPL 473
Query: 64 IYCWMNGRFRVSF 76
IYC + FR++F
Sbjct: 474 IYC-RSPDFRIAF 485
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 7 IKMMVLVVIVYTVCWLP---LNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPV 63
+K + +++ +T+CWLP +NIV +I D NL + + +Y L++W+ + +NP+
Sbjct: 408 LKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NLIRKE----VYILLNWIGYVNSGFNPL 460
Query: 64 IYCWMNGRFRVSF 76
IYC + FR++F
Sbjct: 461 IYC-RSPDFRIAF 472
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 43.9 bits (102), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 7 IKMMVLVVIVYTVCWLP---LNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPV 63
+K + +++ +T+CWLP +NIV +I D NL + + +Y L++W+ + +NP+
Sbjct: 407 LKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NLIRKE----VYILLNWIGYVNSGFNPL 459
Query: 64 IYCWMNGRFRVSF 76
IYC + FR++F
Sbjct: 460 IYC-RSPDFRIAF 471
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 43.1 bits (100), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYC 66
+K + +++ +T+CWLP IV I+ NL + + +Y L++W+ + +NP+IYC
Sbjct: 408 LKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIYC 463
Query: 67 WMNGRFRVSF 76
+ FR++F
Sbjct: 464 -RSPDFRIAF 472
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 42.7 bits (99), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M+ +V+ + VCWLP + ++ + Q P LY WL + NPVIY
Sbjct: 401 QMVAIVLGAFIVCWLPFFLTHVLNT---HCQTCHVSPELYSATTWLGYVNSALNPVIYTT 457
Query: 68 MNGRFRVSFYGVF 80
N FR +F +
Sbjct: 458 FNIEFRKAFLKIL 470
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 1 MDKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCY 60
+ ++ +K + +++ +T+CWLP IV I+ NL + + +Y L++W+ + +
Sbjct: 267 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGF 322
Query: 61 NPVIYCWMNGRFRVSF 76
NP+IYC + FR++F
Sbjct: 323 NPLIYC-RSPDFRIAF 337
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Query: 7 IKMMVLVVIVYTVCWLP---LNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPV 63
+K + +++ +T+CWLP +NIV +I D NL + + +Y L++W+ + +NP+
Sbjct: 376 LKTLGIIMGTFTLCWLPFFIVNIVHVIQD---NLIRKE----VYILLNWIGYVNSGFNPL 428
Query: 64 IYCWMNGRFRVSF 76
IYC + FR++F
Sbjct: 429 IYC-RSPDFRIAF 440
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 1 MDKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCY 60
+ ++ +K + +++ +T+CWLP IV I+ NL + + +Y L++W+ + +
Sbjct: 266 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGF 321
Query: 61 NPVIYCWMNGRFRVSF 76
NP+IYC + FR++F
Sbjct: 322 NPLIYC-RSPDFRIAF 336
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 1 MDKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCY 60
+ ++ +K + +++ +T+CWLP IV I+ NL + + +Y L++W+ + +
Sbjct: 243 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGF 298
Query: 61 NPVIYCWMNGRFRVSF 76
NP+IYC + FR++F
Sbjct: 299 NPLIYC-RSPDFRIAF 313
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M++++VI + +CWLP V A + Q + P+ + + A + YNPVIY
Sbjct: 253 RMVIIMVIAFLICWLPYAGV---AFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIM 309
Query: 68 MNGRFR 73
MN +FR
Sbjct: 310 MNKQFR 315
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M++++VI + +CWLP V A + Q + P+ + + A + YNPVIY
Sbjct: 252 RMVIIMVIAFLICWLPYAGV---AFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIM 308
Query: 68 MNGRFR 73
MN +FR
Sbjct: 309 MNKQFR 314
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYC 66
+K + +++ +T+CWLP IV I+ NL + + +Y L++W+ + +NP+IYC
Sbjct: 216 LKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKE----VYILLNWIGYVNSGFNPLIYC 271
Query: 67 WMNGRFRVSF 76
+ FR++F
Sbjct: 272 -RSPDFRIAF 280
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 39.7 bits (91), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + ++V ++ +CWLPL+I+ + P+ + L +L L+ ++ NP IY +
Sbjct: 395 KSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW--LMYLAIVLSHTNSVVNPFIYAY 452
Query: 68 MNGRFRVSFYGVFR 81
FR +F + R
Sbjct: 453 RIREFRQTFRKIIR 466
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M++++VI + +CWLP V A + Q + P+ + + A + YNPVIY
Sbjct: 253 RMVIIMVIAFLICWLPYAGV---AFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIM 309
Query: 68 MNGRFR 73
MN +FR
Sbjct: 310 MNKQFR 315
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M++++VI + +CWLP V A + Q + P+ + + A + YNPVIY
Sbjct: 252 RMVIIMVIAFLICWLPYAGV---AFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIM 308
Query: 68 MNGRFR 73
MN +FR
Sbjct: 309 MNKQFR 314
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M++++VI + +CWLP V A + Q + P+ + + A + YNPVIY
Sbjct: 253 RMVIIMVIAFLICWLPYAGV---AFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIM 309
Query: 68 MNGRFR 73
MN +FR
Sbjct: 310 MNKQFR 315
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M+++ VI + +CWLP V A + Q + P+ + + A + YNPVIY
Sbjct: 253 RMVIIYVIAFLICWLPYAGV---AFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIM 309
Query: 68 MNGRFR 73
MN +FR
Sbjct: 310 MNKQFR 315
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 13 VVIVYTVCWLPLNIVQIIADWFPNLQQ----LKWFPVLYFLVHWLAMSHPCYNPVIYCWM 68
VVI + VCWLP ++ +++ + + Q ++ Y L + LA + NP++Y +
Sbjct: 414 VVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473
Query: 69 NGRFRVSF 76
+ FR F
Sbjct: 474 SANFRQVF 481
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVH-W------LAMSHPC 59
+K V++++ + CWLP I I D F L+ +K VH W LA H C
Sbjct: 412 LKTTVILILAFFACWLPYYI-GISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCC 470
Query: 60 YNPVIYCWMNGRFRVS 75
NP++Y ++ +F+ S
Sbjct: 471 LNPILYAFLGAKFKTS 486
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVH-W------LAMSHPC 59
+K V++++ + CWLP I I D F L+ +K VH W LA H C
Sbjct: 412 LKTTVILILAFFACWLPYYI-GISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCC 470
Query: 60 YNPVIYCWMNGRFRVS 75
NP++Y ++ +F+ S
Sbjct: 471 LNPILYAFLGAKFKTS 486
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 1 MDKYFMIKMMVLVVIVYTVCWLPLNIVQII----ADWFPNLQQLKWFPVLYFLVHWLAMS 56
M ++ +K + +++ V+T+CWLP +V I+ D P+ W L+ +WL +
Sbjct: 225 MREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD-----W---LFVAFNWLGYA 276
Query: 57 HPCYNPVIYCWMNGRFRVSF 76
+ NP+IYC + FR +F
Sbjct: 277 NSAMNPIIYC-RSPDFRKAF 295
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 1 MDKYFMIKMMVLVVIVYTVCWLPLNIVQII----ADWFPNLQQLKWFPVLYFLVHWLAMS 56
M ++ +K + +++ V+T+CWLP +V I+ D P+ W L+ +WL +
Sbjct: 223 MREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPD-----W---LFVAFNWLGYA 274
Query: 57 HPCYNPVIYCWMNGRFRVSF 76
+ NP+IYC + FR +F
Sbjct: 275 NSAMNPIIYC-RSPDFRKAF 293
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 37.4 bits (85), Expect = 0.004, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVH-W------LAMSHPC 59
+K V++++ + CWLP I I D F L+ +K VH W LA H C
Sbjct: 409 LKPTVILILAFFACWLPYYI-GISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCC 467
Query: 60 YNPVIYCWMNGRFRVS 75
NP++Y ++ +F+ S
Sbjct: 468 LNPILYAFLGAKFKTS 483
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + ++V ++ +CWLPL+I+ + P+ + L +L L+ ++ NP IY +
Sbjct: 354 KSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW--LMYLAIVLSHTNSVVNPFIYAY 411
Query: 68 MNGRFRVSFYGVFRK 82
FR +F + R
Sbjct: 412 RIREFRQTFRKIIRS 426
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQ--------------QLKWFPVLY 47
K+ ++++ VV+++ +CWLP N+V ++AD Q L +L
Sbjct: 208 QKHRAMRVIFAVVLIFLLCWLPYNLV-LLADTLMRTQVIQESCERRNNIGRALDATEILG 266
Query: 48 FLVHWLAMSHPCYNPVIYCWMNGRFRVSF 76
FL H C NP+IY ++ FR F
Sbjct: 267 FL-------HSCLNPIIYAFIGQNFRHGF 288
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + ++V ++ +CWLPL+I+ + P+ + L +L L+ ++ NP IY +
Sbjct: 233 KSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW--LMYLAIVLSHTNSVVNPFIYAY 290
Query: 68 MNGRFRVSFYGVFRK 82
FR +F + R
Sbjct: 291 RIREFRQTFRKIIRS 305
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + ++V ++ +CWLPL+I+ + P+ + L +L L+ ++ NP IY +
Sbjct: 233 KSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW--LMYLAIVLSHTNSVVNPFIYAY 290
Query: 68 MNGRFRVSFYGVFRK 82
FR +F + R
Sbjct: 291 RIREFRQTFRKIIRS 305
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K ++ ++ +CWLPL+I+ + P+ + L +L LA ++ NP IY +
Sbjct: 233 KSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLW--LMYLAIVLAHTNSVVNPFIYAY 290
Query: 68 MNGRFRVSFYGVFRK 82
FR +F + R
Sbjct: 291 RIREFRQTFRKIIRS 305
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 31.2 bits (69), Expect = 0.25, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 13 VVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYF-LVHWLAMSHPCYNPVIYCWMNGR 71
+++ + + W P NI+ ++ + + P Y+ L +WL + NPV Y N
Sbjct: 379 ILLAFIITWTPYNIMVLVNTFCDSC-----IPKTYWNLGYWLCYINSTVNPVCYALCNKT 433
Query: 72 FRVSF 76
FR +F
Sbjct: 434 FRTTF 438
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 6 MIKMMVLVVIVYTVCWLPLNIVQIIADWF----PNLQQLKWFPVLYFLVHWLAMSHPCYN 61
+ +M+++VV V+ VCW P++I II Q + W +F + L ++ C N
Sbjct: 381 ITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSW----HFCIA-LGYTNSCLN 435
Query: 62 PVIYCWMNGRFRVSF 76
PV+Y +++ F+ F
Sbjct: 436 PVLYAFLDENFKRCF 450
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQII----ADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPV 63
+ ++ +++ + + W P N++ +I A PN ++ + +WL + NP
Sbjct: 388 RTILAILLAFIITWAPYNVMVLINTFCAPCIPN--------TVWTIGYWLCYINSTINPA 439
Query: 64 IYCWMNGRFRVSF 76
Y N F+ +F
Sbjct: 440 CYALCNATFKKTF 452
>pdb|1FDF|A Chain A, Helix 7 Bovine Rhodopsin
Length = 25
Score = 26.6 bits (57), Expect = 6.4, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 52 WLAMSHPCYNPVIYCWMNGRFR 73
+ A + YNPVIY MN +FR
Sbjct: 3 FFAKTSAVYNPVIYIMMNKQFR 24
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 20 CWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSF 76
CW P+ + + +L F L + C NP++Y +++ F+ F
Sbjct: 349 CWTPVQVFVLAQGLGVQPSSETAVAILRFCTA-LGYVNSCLNPILYAFLDENFKACF 404
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 19 VCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSF 76
VCW P++I ++ YF + L ++ NP++Y +++ F+ F
Sbjct: 407 VCWTPIHIFILVEALGSTSHSTAALSSYYFCIA-LGYTNSSLNPILYAFLDENFKRCF 463
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.332 0.143 0.493
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,173,986
Number of Sequences: 62578
Number of extensions: 150717
Number of successful extensions: 324
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 37
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.7 bits)