Query psy7568
Match_columns 154
No_of_seqs 112 out of 1973
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 21:44:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 1.6E-21 3.4E-26 148.6 7.2 87 2-88 255-341 (423)
2 PHA03234 DNA packaging protein 99.8 1.7E-20 3.6E-25 144.3 8.7 82 2-83 231-317 (338)
3 PHA03235 DNA packaging protein 99.8 1.9E-19 4.2E-24 141.4 8.8 85 3-87 239-328 (409)
4 PHA02834 chemokine receptor-li 99.8 1.2E-18 2.6E-23 133.3 6.3 83 2-84 223-311 (323)
5 KOG4220|consensus 99.7 1.4E-18 3.1E-23 132.9 3.8 83 2-88 411-493 (503)
6 PHA02638 CC chemokine receptor 99.7 2.6E-17 5.7E-22 129.8 8.5 81 2-83 307-398 (417)
7 PHA03087 G protein-coupled che 99.6 1.4E-15 2.9E-20 116.6 8.4 82 2-83 238-324 (335)
8 PF00001 7tm_1: 7 transmembran 99.2 5.5E-11 1.2E-15 86.2 6.3 62 2-65 196-257 (257)
9 PF10324 7TM_GPCR_Srw: Serpent 98.8 2.3E-08 5.1E-13 76.2 7.9 81 2-82 236-317 (318)
10 KOG2087|consensus 98.6 6.2E-10 1.4E-14 84.7 -5.1 82 5-89 232-313 (363)
11 PF10320 7TM_GPCR_Srsx: Serpen 97.9 1.3E-05 2.9E-10 59.6 4.0 77 2-80 181-257 (257)
12 PF10321 7TM_GPCR_Srt: Serpent 96.9 0.0017 3.6E-08 49.9 4.7 70 3-82 238-307 (313)
13 PF10323 7TM_GPCR_Srv: Serpent 96.8 0.0098 2.1E-07 44.9 7.9 77 2-82 207-283 (283)
14 PF11970 Git3_C: G protein-cou 96.6 0.012 2.6E-07 35.6 6.0 64 4-70 8-72 (76)
15 PF05296 TAS2R: Mammalian tast 96.1 0.038 8.3E-07 42.2 7.8 73 4-83 230-302 (303)
16 PF05462 Dicty_CAR: Slime mold 96.0 0.031 6.6E-07 42.8 6.5 68 10-83 204-271 (303)
17 PF02101 Ocular_alb: Ocular al 94.6 0.25 5.4E-06 38.8 7.7 25 8-32 244-268 (405)
18 PF10317 7TM_GPCR_Srd: Serpent 92.8 0.47 1E-05 35.9 6.4 70 4-78 223-292 (292)
19 PF10318 7TM_GPCR_Srh: Serpent 91.9 0.81 1.8E-05 34.6 6.7 71 6-82 232-302 (302)
20 PF03402 V1R: Vomeronasal orga 91.4 0.13 2.8E-06 38.6 1.9 69 2-76 195-263 (265)
21 KOG2575|consensus 90.2 0.35 7.6E-06 38.4 3.3 25 4-28 255-279 (510)
22 PF10328 7TM_GPCR_Srx: Serpent 89.0 0.99 2.1E-05 33.7 5.0 69 3-80 205-273 (274)
23 PF10327 7TM_GPCR_Sri: Serpent 88.9 0.88 1.9E-05 34.8 4.7 67 4-75 236-302 (303)
24 PF03125 Sre: C. elegans Sre G 84.8 13 0.00029 29.1 9.3 40 44-83 283-322 (365)
25 KOG4564|consensus 80.4 3.7 8.1E-05 33.4 4.7 71 4-83 350-420 (473)
26 PF10326 7TM_GPCR_Str: Serpent 74.6 0.57 1.2E-05 35.5 -1.3 61 11-77 247-307 (307)
27 PF03155 Alg6_Alg8: ALG6, ALG8 69.0 6.8 0.00015 32.0 3.6 24 4-27 221-244 (469)
28 KOG4193|consensus 66.4 83 0.0018 26.8 9.7 37 46-82 545-581 (610)
29 PF05393 Hum_adeno_E3A: Human 65.2 8.6 0.00019 23.8 2.7 14 9-22 43-56 (94)
30 PF10292 7TM_GPCR_Srab: Serpen 61.0 56 0.0012 25.1 7.2 79 2-81 227-305 (324)
31 PF02118 Srg: Srg family chemo 58.1 47 0.001 24.4 6.2 34 43-76 242-275 (275)
32 PF10319 7TM_GPCR_Srj: Serpent 56.5 32 0.00069 26.6 5.0 56 15-75 254-309 (310)
33 KOG1726|consensus 55.7 38 0.00083 24.9 5.1 16 11-26 48-63 (225)
34 PF11119 DUF2633: Protein of u 49.1 50 0.0011 18.9 3.9 16 1-16 1-16 (59)
35 PF00375 SDF: Sodium:dicarboxy 46.9 1.2E+02 0.0026 24.0 7.2 74 8-81 170-247 (390)
36 KOG3827|consensus 43.6 12 0.00026 29.6 1.0 61 5-68 61-122 (400)
37 COG1687 AzlD Predicted branche 43.0 40 0.00087 21.6 3.1 22 6-27 6-27 (106)
38 PF07136 DUF1385: Protein of u 42.2 1.4E+02 0.0031 22.2 7.6 47 9-55 48-94 (236)
39 PF10601 zf-LITAF-like: LITAF- 41.0 32 0.0007 20.1 2.4 9 19-27 44-52 (73)
40 PHA02849 putative transmembran 40.6 78 0.0017 19.2 3.9 25 8-32 16-40 (82)
41 PF04505 Dispanin: Interferon- 40.5 18 0.00039 22.0 1.3 20 14-33 23-42 (82)
42 PF09889 DUF2116: Uncharacteri 40.3 38 0.00083 19.3 2.5 16 6-21 38-53 (59)
43 TIGR01912 TatC-Arch Twin argin 39.8 68 0.0015 23.7 4.5 29 3-31 10-38 (237)
44 COG3821 Predicted membrane pro 38.1 27 0.00058 25.3 2.0 16 11-26 7-22 (234)
45 KOG3500|consensus 35.4 89 0.0019 19.1 3.6 27 4-32 31-57 (84)
46 PF10624 TraS: Plasmid conjuga 35.4 18 0.00038 24.4 0.7 18 6-23 4-21 (164)
47 PHA02657 hypothetical protein; 33.7 98 0.0021 19.1 3.7 24 9-32 27-50 (95)
48 PF11337 DUF3139: Protein of u 33.4 52 0.0011 20.0 2.6 15 1-15 1-15 (85)
49 PF04789 DUF621: Protein of un 33.3 1.3E+02 0.0028 23.1 5.0 69 8-79 227-295 (305)
50 PF10445 DUF2456: Protein of u 33.0 89 0.0019 19.7 3.5 25 4-28 27-51 (94)
51 smart00714 LITAF Possible memb 32.4 67 0.0015 18.4 2.8 9 18-26 37-45 (67)
52 PF02532 PsbI: Photosystem II 32.2 76 0.0016 16.1 2.7 14 7-20 4-17 (36)
53 PF10828 DUF2570: Protein of u 31.5 61 0.0013 20.8 2.7 28 1-28 1-28 (110)
54 PF06072 Herpes_US9: Alphaherp 31.3 1.1E+02 0.0023 17.5 3.7 24 3-26 28-52 (60)
55 PF04093 MreD: rod shape-deter 30.4 1.7E+02 0.0037 19.5 5.4 23 52-74 137-159 (160)
56 PF15086 UPF0542: Uncharacteri 30.2 96 0.0021 18.5 3.1 20 14-33 23-42 (74)
57 COG1823 Predicted Na+/dicarbox 30.0 2.3E+02 0.0049 22.9 6.0 27 7-33 222-248 (458)
58 PRK13735 conjugal transfer mat 29.6 1.9E+02 0.004 26.2 6.1 27 5-31 323-349 (942)
59 PF03839 Sec62: Translocation 29.4 1.3E+02 0.0027 22.2 4.4 20 6-25 112-131 (224)
60 TIGR00934 2a38euk potassium up 27.6 3E+02 0.0065 24.4 6.8 60 3-62 444-510 (800)
61 PF11014 DUF2852: Protein of u 27.2 1.2E+02 0.0026 19.8 3.5 23 10-33 12-34 (115)
62 COG2383 Uncharacterized conser 26.8 93 0.002 19.9 2.8 17 4-20 37-53 (109)
63 COG5058 LAG1 Protein transport 26.5 2.4E+02 0.0052 22.2 5.5 63 7-70 234-296 (395)
64 PF08802 CytB6-F_Fe-S: Cytochr 25.7 1.1E+02 0.0024 15.9 3.3 29 1-29 6-34 (39)
65 PF08525 OapA_N: Opacity-assoc 25.6 65 0.0014 15.5 1.6 19 5-24 11-29 (30)
66 PF05391 Lsm_interact: Lsm int 24.5 41 0.0009 14.9 0.7 10 68-77 11-20 (21)
67 KOG4686|consensus 23.6 93 0.002 24.5 2.9 22 7-28 266-287 (459)
68 PF14126 DUF4293: Domain of un 23.6 1.2E+02 0.0026 20.6 3.2 27 1-27 1-27 (149)
69 KOG2576|consensus 23.5 74 0.0016 25.8 2.4 23 4-26 221-243 (500)
70 PF15108 TMEM37: Voltage-depen 23.5 2.4E+02 0.0052 19.7 4.5 20 40-59 154-173 (184)
71 PF06210 DUF1003: Protein of u 22.3 96 0.0021 20.0 2.4 55 9-71 5-60 (108)
72 PF01679 Pmp3: Proteolipid mem 22.3 60 0.0013 17.9 1.3 22 8-29 25-46 (51)
73 TIGR00869 sec62 protein transl 21.9 1.2E+02 0.0027 22.4 3.2 20 6-25 120-139 (232)
74 PF14752 RBP_receptor: Retinol 21.7 3E+02 0.0065 23.7 5.7 46 11-82 169-214 (617)
No 1
>KOG4219|consensus
Probab=99.85 E-value=1.6e-21 Score=148.65 Aligned_cols=87 Identities=40% Similarity=0.914 Sum_probs=78.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhh
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFR 81 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 81 (154)
+++|+.+|+++||+.|.+||+|||+..++....++....+....++....||+.+|+|+||+||++.|++||.++++.++
T Consensus 255 ak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr 334 (423)
T KOG4219|consen 255 AKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFR 334 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhh
Confidence 47899999999999999999999999999988776667778888999999999999999999999999999999999999
Q ss_pred ccCCccc
Q psy7568 82 KVPILKH 88 (154)
Q Consensus 82 ~~~~~~~ 88 (154)
|++....
T Consensus 335 ~cp~v~~ 341 (423)
T KOG4219|consen 335 WCPFVKG 341 (423)
T ss_pred eeeeecc
Confidence 8864433
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.83 E-value=1.7e-20 Score=144.27 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHH
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFP-----NLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSF 76 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~-----~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~ 76 (154)
+++|+++|+++++++|++||+||+++.++..+.. ++........++.++.+|+++|||+||+||++.+++||+++
T Consensus 231 ~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~ 310 (338)
T PHA03234 231 KHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRF 310 (338)
T ss_pred hhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHH
Confidence 5789999999999999999999999987765421 12112234456788999999999999999999999999999
Q ss_pred HHhhhcc
Q psy7568 77 YGVFRKV 83 (154)
Q Consensus 77 ~~~~~~~ 83 (154)
+++++..
T Consensus 311 ~~~~~~~ 317 (338)
T PHA03234 311 TACFQDF 317 (338)
T ss_pred HHHHHHH
Confidence 9988754
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.80 E-value=1.9e-19 Score=141.42 Aligned_cols=85 Identities=13% Similarity=0.297 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHH
Q psy7568 3 KYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFP-----NLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFY 77 (154)
Q Consensus 3 ~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~-----~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~ 77 (154)
++|+++++++++++|++||+||+++.++..+.. .+........+..++.+|+++|||+||+||++++++||++++
T Consensus 239 ~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~ 318 (409)
T PHA03235 239 RSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFR 318 (409)
T ss_pred chhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHH
Confidence 568888999999999999999999988765421 111122344577888999999999999999999999999999
Q ss_pred HhhhccCCcc
Q psy7568 78 GVFRKVPILK 87 (154)
Q Consensus 78 ~~~~~~~~~~ 87 (154)
+.+++....+
T Consensus 319 ~~l~~~l~~~ 328 (409)
T PHA03235 319 QCFRGELFSR 328 (409)
T ss_pred HHHhhhhhhh
Confidence 9997654444
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.75 E-value=1.2e-18 Score=133.25 Aligned_cols=83 Identities=27% Similarity=0.470 Sum_probs=66.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------ccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHH
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPN------LQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVS 75 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~------~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~ 75 (154)
+++|++||+++++++|++||+||++..++..+.+. +........+..++.+++++|||+||+||++++++||++
T Consensus 223 ~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~ 302 (323)
T PHA02834 223 NKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKV 302 (323)
T ss_pred ccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHH
Confidence 46789999999999999999999999887665321 000111223456788999999999999999999999999
Q ss_pred HHHhhhccC
Q psy7568 76 FYGVFRKVP 84 (154)
Q Consensus 76 ~~~~~~~~~ 84 (154)
+++++++..
T Consensus 303 ~~~~~~~~~ 311 (323)
T PHA02834 303 FKNMFCRTN 311 (323)
T ss_pred HHHHHHhhh
Confidence 999997643
No 5
>KOG4220|consensus
Probab=99.73 E-value=1.4e-18 Score=132.89 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=74.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhh
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFR 81 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 81 (154)
+|+|+++++..|+++|++||+||+|+.++..|.++| .+..++.+..||.|+||-+||++|++-|..||+.|++++.
T Consensus 411 rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~C----iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~ 486 (503)
T KOG4220|consen 411 RERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNC----IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLL 486 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccc----cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhe
Confidence 689999999999999999999999999999997654 4556888999999999999999999999999999999997
Q ss_pred ccCCccc
Q psy7568 82 KVPILKH 88 (154)
Q Consensus 82 ~~~~~~~ 88 (154)
|.++.++
T Consensus 487 Cr~~~~~ 493 (503)
T KOG4220|consen 487 CRWKKRR 493 (503)
T ss_pred eeecccc
Confidence 6654444
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.71 E-value=2.6e-17 Score=129.76 Aligned_cols=81 Identities=27% Similarity=0.578 Sum_probs=67.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------CccccchHHHHHHHHHHHhhhcCccchhhHhhcCH
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFP-----------NLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNG 70 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~-----------~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~ 70 (154)
+++|+++++++++++|++||+||+++.++..+.. .|.. .....+..++.+++++|||+||+||++.++
T Consensus 307 ~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~-~~l~~~~~vt~~la~~~sclNPiIY~f~~~ 385 (417)
T PHA02638 307 KKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGF-IKLGYAMMLAEAISLTHCCINPLIYTLIGE 385 (417)
T ss_pred ccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhCH
Confidence 4689999999999999999999999998876531 1111 134456778899999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q psy7568 71 RFRVSFYGVFRKV 83 (154)
Q Consensus 71 ~fR~~~~~~~~~~ 83 (154)
+||+++++++++.
T Consensus 386 ~FR~~l~~~~~~~ 398 (417)
T PHA02638 386 NFRMHLLMIFRNI 398 (417)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.62 E-value=1.4e-15 Score=116.64 Aligned_cols=82 Identities=21% Similarity=0.512 Sum_probs=67.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHH
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWF-----PNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSF 76 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~-----~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~ 76 (154)
+++|++|++++++++|++||+||++..++..+. ..+........+..++.+++.+|+|+||+||++++++||+++
T Consensus 238 ~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~ 317 (335)
T PHA03087 238 KNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHK 317 (335)
T ss_pred hcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHH
Confidence 568999999999999999999999988776532 111222344566778899999999999999999999999999
Q ss_pred HHhhhcc
Q psy7568 77 YGVFRKV 83 (154)
Q Consensus 77 ~~~~~~~ 83 (154)
++.++..
T Consensus 318 ~~~~~~~ 324 (335)
T PHA03087 318 KKSLKLM 324 (335)
T ss_pred HHHHHHH
Confidence 9999754
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.18 E-value=5.5e-11 Score=86.22 Aligned_cols=62 Identities=27% Similarity=0.748 Sum_probs=54.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhH
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIY 65 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY 65 (154)
+++|+++++++++++|++||+|+.+..++..+.+.. .. ....+..++.+++++|+++||+||
T Consensus 196 ~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 196 RERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSS-SL-ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTS-TC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCceeHHHHHHHHcCcc-ch-hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 468999999999999999999999999998886543 22 678899999999999999999999
No 9
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.80 E-value=2.3e-08 Score=76.21 Aligned_cols=81 Identities=16% Similarity=0.317 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhh
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPN-LQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVF 80 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~-~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~ 80 (154)
++.+.+++++.+++.|+++=+|+.+..++..+..+ .........+..+...|..+|+..|++||.+++.+||+.+++++
T Consensus 236 ~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f 315 (318)
T PF10324_consen 236 KSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLF 315 (318)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHh
Confidence 45678999999999999999999999999876332 22345566778888999999999999999999999999999999
Q ss_pred hc
Q psy7568 81 RK 82 (154)
Q Consensus 81 ~~ 82 (154)
+|
T Consensus 316 ~~ 317 (318)
T PF10324_consen 316 GC 317 (318)
T ss_pred cc
Confidence 75
No 10
>KOG2087|consensus
Probab=98.63 E-value=6.2e-10 Score=84.67 Aligned_cols=82 Identities=21% Similarity=0.457 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhccC
Q psy7568 5 FMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRKVP 84 (154)
Q Consensus 5 k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~ 84 (154)
++++-+..+++.-.+||.|.+++.+...++.+....... -.+..+.--+|||+||++|+++++.||+.++.+..+..
T Consensus 232 ~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~s---k~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~ 308 (363)
T KOG2087|consen 232 SVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYS---KWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVG 308 (363)
T ss_pred hhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhc---eeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcc
Confidence 456666788899999999999999998875433222211 12334556689999999999999999999999997665
Q ss_pred Ccccc
Q psy7568 85 ILKHT 89 (154)
Q Consensus 85 ~~~~~ 89 (154)
.++.+
T Consensus 309 ~~k~~ 313 (363)
T KOG2087|consen 309 LCKNR 313 (363)
T ss_pred hhhhH
Confidence 44443
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.91 E-value=1.3e-05 Score=59.61 Aligned_cols=77 Identities=14% Similarity=0.301 Sum_probs=61.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhh
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVF 80 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~ 80 (154)
+++|+.|.+.+.+++|++.|.=-.+...+...... .......+.....+++.+|.+.|-++|.+.|++||+++++++
T Consensus 181 ~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~--~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 181 RSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGL--DGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred hHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 35899999999999999999987777655543222 223344566677899999999999999999999999999864
No 12
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=96.90 E-value=0.0017 Score=49.86 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhc
Q psy7568 3 KYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRK 82 (154)
Q Consensus 3 ~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 82 (154)
++++.-...++.+..++.++=|....++ ..+.++..+.+..=-+++..+|+||-.+|+..|++++++++.
T Consensus 238 ~~qI~iQs~iIC~f~~i~a~iyv~m~f~----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~ 307 (313)
T PF10321_consen 238 QRQIFIQSVIICFFHAIAAVIYVYMQFF----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGP 307 (313)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHeeeee----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcc
Confidence 3455555555555555555444332221 234567777788888899999999999999999999999974
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.76 E-value=0.0098 Score=44.92 Aligned_cols=77 Identities=12% Similarity=0.002 Sum_probs=48.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhh
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFR 81 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 81 (154)
+|.+.+.+..+.++++++... |++.........+ ......+..+...+.-+.|.+||+.--++|+++|+++++.++
T Consensus 207 rE~~L~~~~~i~~~a~~~~~~-~~~~~~~~~~~~~---~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~ 282 (283)
T PF10323_consen 207 REIRLAIQVFILFCAFFVILV-YYIFSNYFAQNFN---TDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLK 282 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcC
Confidence 355666666555555444333 3333333333221 111333444666777889999999999999999999999886
Q ss_pred c
Q psy7568 82 K 82 (154)
Q Consensus 82 ~ 82 (154)
|
T Consensus 283 ~ 283 (283)
T PF10323_consen 283 C 283 (283)
T ss_pred C
Confidence 5
No 14
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.61 E-value=0.012 Score=35.59 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCH
Q psy7568 4 YFMIKMMVLVVIVYTVCWL-PLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNG 70 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~-Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~ 70 (154)
+|.++.+++==++|+++|+ |+.+-.+-.... .......++..++..+..+|+.+|=++|++.-+
T Consensus 8 ~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~---~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er 72 (76)
T PF11970_consen 8 RRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYE---IGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence 4556666666789999999 998877766632 133455678888899999999999999988653
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=96.12 E-value=0.038 Score=42.18 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhcc
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRKV 83 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 83 (154)
.||+|+++..++.|++ |++..++..+... ......+..+...+.++.+...|+|-.+-|+++|+++++++++.
T Consensus 230 ~~a~k~~~sfl~ly~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~ 302 (303)
T PF05296_consen 230 IRAIKTMISFLILYII----YFLSLILSFLSFF---FPENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL 302 (303)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 4566666655555555 4444444322110 11123345677788999999999999999999999999999764
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=95.95 E-value=0.031 Score=42.78 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhcc
Q psy7568 10 MVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRKV 83 (154)
Q Consensus 10 ~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 83 (154)
+..=.++|++||.|-.+..+...++.. +.++..+-..++.+...+|.++|++.++-+++.+...+++.
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~~------~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~ 271 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGKN------PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQ 271 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 446678999999999999998877421 23444455677888889999999999999999888777543
No 17
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=94.63 E-value=0.25 Score=38.81 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 8 KMMVLVVIVYTVCWLPLNIVQIIAD 32 (154)
Q Consensus 8 ~~~~~vv~~F~~cw~Py~v~~l~~~ 32 (154)
+-++.|+++|.+||+|-.|--++..
T Consensus 244 ~kFf~I~lVF~iCWlpNIINg~LL~ 268 (405)
T PF02101_consen 244 IKFFKIMLVFYICWLPNIINGSLLF 268 (405)
T ss_pred HHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 3457889999999999988765443
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=92.77 E-value=0.47 Score=35.91 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYG 78 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~ 78 (154)
++.++.+.+=.+.=+++..|-....++..+.. .......++...++.+-+.+||+++.++-+.||++++|
T Consensus 223 ~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~-----~~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 223 RQLVKGLTIQALLPLFFYIPGVIIYFLSQFTG-----YEHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 34445555555555666666555555554421 23445556666677778899999999999999999874
No 19
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=91.86 E-value=0.81 Score=34.59 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhc
Q psy7568 6 MIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRK 82 (154)
Q Consensus 6 ~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 82 (154)
...+.+-+.+-+++.-.|.....+...++. ....+..+..++...++.+.-++..+.++.+|+.+.++++|
T Consensus 232 l~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~------~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 232 LIALIIQVLIPFIFLFIPLIYFIISIIFGY------YNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccc------cccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 344555666677777889888776665532 11335567778888999999999999999999999999975
No 20
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=91.41 E-value=0.13 Score=38.63 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=52.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHH
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSF 76 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~ 76 (154)
.|.||++++++.|..|++.+.--.++.+......+ ..++..+..+++..-+.+-|++-...++++.+..
T Consensus 195 pE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~------~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 195 PETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN------SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred hhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC------CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 47899999999999999999998887654443222 2234456678888889999999998888776643
No 21
>KOG2575|consensus
Probab=90.21 E-value=0.35 Score=38.40 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIVQ 28 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~~ 28 (154)
.+++++.++|++.|++||.|+....
T Consensus 255 ~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 255 ARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678899999999999999997543
No 22
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=89.03 E-value=0.99 Score=33.70 Aligned_cols=69 Identities=9% Similarity=0.185 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhh
Q psy7568 3 KYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVF 80 (154)
Q Consensus 3 ~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~ 80 (154)
|.+..+..+.--++|++.|.=|.+..-+. .......+.....| .+.-++|++|+.++|+++|+..++..
T Consensus 205 e~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~-------~~~~~~F~~~t~~w--~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 205 EIRFFIQSFIQDLLYLIDLIFYFFIPPLS-------SNRWWQFFCTTFSW--VLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHH--HHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 45566666677777777777776653331 11222322222223 33456899999999999999988753
No 23
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=88.94 E-value=0.88 Score=34.76 Aligned_cols=67 Identities=13% Similarity=0.156 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVS 75 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~ 75 (154)
|++++-+++=.++-.+|.+|-.+..++..+. ......+..+......++|.+|=++-.+.++.||+-
T Consensus 236 k~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~-----~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 236 KEAVRSLIAQFATSSICILPPFIFVVVVIFE-----FEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhheec-----CCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 5677777777778888889998877766652 233445667777888899999999999999999984
No 24
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=84.80 E-value=13 Score=29.10 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhcc
Q psy7568 44 PVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRKV 83 (154)
Q Consensus 44 ~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 83 (154)
..+..+......+++.+=|.+-.+..+..|+.+++.+...
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~ 322 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKI 322 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhh
Confidence 4566677788888888888888899999999999998643
No 25
>KOG4564|consensus
Probab=80.42 E-value=3.7 Score=33.45 Aligned_cols=71 Identities=13% Similarity=0.377 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhcc
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRKV 83 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 83 (154)
+|++|-.++.+=+|-+-.+. ..+.++ ......+...+-..|..+...+=-+||+|.|.+.|.++++...+.
T Consensus 350 ~K~vKaTLvLIPLfGI~~il-------f~~~P~--~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~ 420 (473)
T KOG4564|consen 350 RKLVKATLVLIPLFGIHYIL-------FAFRPD--EDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRW 420 (473)
T ss_pred HHHHHHHHHHHHHcCCeeEE-------EEecCc--hHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhc
Confidence 56666666665555544221 112221 112233334444678888888888999999999999999988643
No 26
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=74.59 E-value=0.57 Score=35.51 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHH
Q psy7568 11 VLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFY 77 (154)
Q Consensus 11 ~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~ 77 (154)
+-.++=+++..+|..+..+.-.++-+. .....+...+..+.+++||++-.+.-++||++++
T Consensus 247 ~Qt~iP~i~~~~P~~~~~~~p~~~i~~------~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 247 IQTIIPFIFMYIPVFIVFILPFFGIDL------GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred HHhhhhheeeecchhheeeeeccCCCC------CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 345566778889998887776654221 2233455677888999999999999999999874
No 27
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=69.01 E-value=6.8 Score=32.02 Aligned_cols=24 Identities=17% Similarity=0.366 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIV 27 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~ 27 (154)
+|+++..++|+++|+++|.|+...
T Consensus 221 ~~~~~lg~~Vi~~f~~~~~PF~~~ 244 (469)
T PF03155_consen 221 KRLIKLGIVVIATFALSFGPFLYS 244 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999999744
No 28
>KOG4193|consensus
Probab=66.38 E-value=83 Score=26.84 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhc
Q psy7568 46 LYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRK 82 (154)
Q Consensus 46 ~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 82 (154)
+.+++-++-.+....=-+.|+++.+++|++.++.+++
T Consensus 545 ~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~ 581 (610)
T KOG4193|consen 545 FAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCC 581 (610)
T ss_pred HHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcc
Confidence 3444444444456666788999999999999999984
No 29
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=65.23 E-value=8.6 Score=23.80 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy7568 9 MMVLVVIVYTVCWL 22 (154)
Q Consensus 9 ~~~~vv~~F~~cw~ 22 (154)
|++++|+.+++||.
T Consensus 43 iFil~VilwfvCC~ 56 (94)
T PF05393_consen 43 IFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555553
No 30
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=61.02 E-value=56 Score=25.10 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=51.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhh
Q psy7568 2 DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFR 81 (154)
Q Consensus 2 ~~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 81 (154)
++.|+++++..++.+..+.-+-|.+..++.....+.........+..+ ......++.+=|++.....+..|++.++-+.
T Consensus 227 ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~-~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l~ 305 (324)
T PF10292_consen 227 ENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALAEL-NHIFPLYSIISPLILYRKIKKIRKKRKKRLE 305 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888777777776665543221111222222222 3455667788888888888888888776664
No 31
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=58.06 E-value=47 Score=24.43 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHH
Q psy7568 43 FPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSF 76 (154)
Q Consensus 43 ~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~ 76 (154)
......+.....=.-+...|++--+++++.|+++
T Consensus 242 ~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~v 275 (275)
T PF02118_consen 242 SSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQV 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheECHhhhccC
Confidence 3334444444444456677999999999999863
No 32
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=56.50 E-value=32 Score=26.60 Aligned_cols=56 Identities=13% Similarity=0.038 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHH
Q psy7568 15 IVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVS 75 (154)
Q Consensus 15 ~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~ 75 (154)
+=-++|+.|=.+.+....++ .....++.++.....-.=+++||+.-.+.-+.||+.
T Consensus 254 IPi~vsf~Pc~~~wy~pif~-----i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 254 IPICVSFSPCVLSWYGPIFG-----IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred hHHHHhhccHHHHHhHHHHc-----CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 33578888888877665653 233455666666555667899999999999999975
No 33
>KOG1726|consensus
Probab=55.74 E-value=38 Score=24.88 Aligned_cols=16 Identities=13% Similarity=0.499 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7568 11 VLVVIVYTVCWLPLNI 26 (154)
Q Consensus 11 ~~vv~~F~~cw~Py~v 26 (154)
+=.++-|+++|+|++.
T Consensus 48 ~e~~~d~~lsw~P~Y~ 63 (225)
T KOG1726|consen 48 FETLTDFLLSWFPFYS 63 (225)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 3345556778888664
No 34
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=49.14 E-value=50 Score=18.86 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=8.5
Q ss_pred CcchhHHHHHHHHHHH
Q psy7568 1 MDKYFMIKMMVLVVIV 16 (154)
Q Consensus 1 ~~~~k~~~~~~~vv~~ 16 (154)
|+++|..+|.-.|+++
T Consensus 1 ~r~k~~~~mtriVLLI 16 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLI 16 (59)
T ss_pred CCCcccchHHHHHHHH
Confidence 4566666665544433
No 35
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=46.89 E-value=1.2e+02 Score=23.99 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCccccch---HHHHHHHHHHHhhhcCccchhhHh-hcCHHHHHHHHHhhh
Q psy7568 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKW---FPVLYFLVHWLAMSHPCYNPVIYC-WMNGRFRVSFYGVFR 81 (154)
Q Consensus 8 ~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~---~~~~~~~~~~L~~~ns~~NPiiY~-~~~~~fR~~~~~~~~ 81 (154)
..++.-++-++++..|+.+..++.....+...... ..++..+.......-..+.|+++. +...+..+-++++..
T Consensus 170 ~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~ 247 (390)
T PF00375_consen 170 NEVIMKIINWIMKLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLP 247 (390)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHH
Confidence 44566778889999999999888775432222221 222222222222223568999999 555577777777664
No 36
>KOG3827|consensus
Probab=43.58 E-value=12 Score=29.65 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CccccchHHHHHHHHHHHhhhcCccchhhHhhc
Q psy7568 5 FMIKMMVLVVIVYTVCWLPLNIVQIIADWFP-NLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWM 68 (154)
Q Consensus 5 k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~~-~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~ 68 (154)
|--.|+++-.+.|++.|+=|-+++-+.++.. +..... .-...+.|...+++...-|+|++-
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~---~~~~~tpCV~nV~sf~sAFLFSiE 122 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDP---PGENHTPCVMNVHSFTSAFLFSIE 122 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCC---CCcCCCcceeeccchhhhheeeee
Confidence 3346788889999999999998876655532 111111 111233455566666666665543
No 37
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=43.01 E-value=40 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7568 6 MIKMMVLVVIVYTVCWLPLNIV 27 (154)
Q Consensus 6 ~~~~~~~vv~~F~~cw~Py~v~ 27 (154)
++..+..++++|+.-|+||.+.
T Consensus 6 ~l~i~v~~v~t~~~RilPF~if 27 (106)
T COG1687 6 ILTIIVIAVGTFLTRILPFLIF 27 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4556778899999999999874
No 38
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=42.16 E-value=1.4e+02 Score=22.15 Aligned_cols=47 Identities=13% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhh
Q psy7568 9 MMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAM 55 (154)
Q Consensus 9 ~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 55 (154)
.+.+...+.++-++|+.+..++..+..+....+....+..+..+++|
T Consensus 48 ~~s~~~~i~lF~~lP~~l~~~~~~~~~~~~~~~l~eG~ir~~if~~Y 94 (236)
T PF07136_consen 48 ILSLALAIGLFVVLPTFLAGLLKRFISSSFLFNLIEGLIRLAIFLGY 94 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 33455566677889999999887664433334555556666655544
No 39
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=40.95 E-value=32 Score=20.14 Aligned_cols=9 Identities=22% Similarity=0.633 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q psy7568 19 VCWLPLNIV 27 (154)
Q Consensus 19 ~cw~Py~v~ 27 (154)
+||+||.+-
T Consensus 44 ~~~iP~~~~ 52 (73)
T PF10601_consen 44 CCCIPFCCD 52 (73)
T ss_pred HhhHhhccc
Confidence 466676553
No 40
>PHA02849 putative transmembrane protein; Provisional
Probab=40.63 E-value=78 Score=19.16 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 8 KMMVLVVIVYTVCWLPLNIVQIIAD 32 (154)
Q Consensus 8 ~~~~~vv~~F~~cw~Py~v~~l~~~ 32 (154)
..+++.+.++++|.+-|.++.+...
T Consensus 16 ~v~vi~v~v~vI~i~~flLlyLvkw 40 (82)
T PHA02849 16 AVTVILVFVLVISFLAFMLLYLIKW 40 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888887777666654
No 41
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=40.53 E-value=18 Score=21.98 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7568 14 VIVYTVCWLPLNIVQIIADW 33 (154)
Q Consensus 14 v~~F~~cw~Py~v~~l~~~~ 33 (154)
++..++|+.|.-++.++...
T Consensus 23 I~s~l~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 23 IFSTLCCCWPLGIVAIVYSS 42 (82)
T ss_pred HHHHHHHHhhHHHHHheech
Confidence 34444666699988888764
No 42
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=40.35 E-value=38 Score=19.32 Aligned_cols=16 Identities=13% Similarity=0.465 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7568 6 MIKMMVLVVIVYTVCW 21 (154)
Q Consensus 6 ~~~~~~~vv~~F~~cw 21 (154)
.-.++..++++|++-|
T Consensus 38 ~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 38 TQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555544443
No 43
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=39.80 E-value=68 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 3 KYFMIKMMVLVVIVYTVCWLPLNIVQIIA 31 (154)
Q Consensus 3 ~~k~~~~~~~vv~~F~~cw~Py~v~~l~~ 31 (154)
|+|..+.++++++.+++||.|+..-.+++
T Consensus 10 R~Rli~~~i~~~~~~~~~~~~~~~~~i~~ 38 (237)
T TIGR01912 10 RLILLLVALAIVTGSVLGWLTIFTPFIIA 38 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999996665544443
No 44
>COG3821 Predicted membrane protein [Function unknown]
Probab=38.12 E-value=27 Score=25.30 Aligned_cols=16 Identities=31% Similarity=0.858 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7568 11 VLVVIVYTVCWLPLNI 26 (154)
Q Consensus 11 ~~vv~~F~~cw~Py~v 26 (154)
++.+++|++||+-|.-
T Consensus 7 ~lA~~~F~~~W~~yt~ 22 (234)
T COG3821 7 LLALAVFLLCWLLYTP 22 (234)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 4567889999987754
No 45
>KOG3500|consensus
Probab=35.40 E-value=89 Score=19.10 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIVQIIAD 32 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~~l~~~ 32 (154)
+-+++..+++.+ ++||+=..+..+...
T Consensus 31 ~~li~~~lvlTA--VCCwlfWli~ylaQl 57 (84)
T KOG3500|consen 31 RGLIRCMLVLTA--VCCWLFWLIVYLAQL 57 (84)
T ss_pred cChhHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 334555444444 888887777666554
No 46
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=35.38 E-value=18 Score=24.36 Aligned_cols=18 Identities=22% Similarity=0.711 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy7568 6 MIKMMVLVVIVYTVCWLP 23 (154)
Q Consensus 6 ~~~~~~~vv~~F~~cw~P 23 (154)
.+++.++.++-|+.|++-
T Consensus 4 l~~i~lv~viQfIaCyLA 21 (164)
T PF10624_consen 4 LAHIALVTVIQFIACYLA 21 (164)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555666666666553
No 47
>PHA02657 hypothetical protein; Provisional
Probab=33.71 E-value=98 Score=19.09 Aligned_cols=24 Identities=17% Similarity=0.544 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 9 MMVLVVIVYTVCWLPLNIVQIIAD 32 (154)
Q Consensus 9 ~~~~vv~~F~~cw~Py~v~~l~~~ 32 (154)
++++.+.+|++|.+-|.++.+..+
T Consensus 27 imVitvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 27 ILVFTIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888877777666544
No 48
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=33.37 E-value=52 Score=19.96 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=8.1
Q ss_pred CcchhHHHHHHHHHH
Q psy7568 1 MDKYFMIKMMVLVVI 15 (154)
Q Consensus 1 ~~~~k~~~~~~~vv~ 15 (154)
|++.|++..++.+++
T Consensus 1 MKK~kii~iii~li~ 15 (85)
T PF11337_consen 1 MKKKKIILIIIILIV 15 (85)
T ss_pred CCchHHHHHHHHHHH
Confidence 666566655444443
No 49
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=33.29 E-value=1.3e+02 Score=23.14 Aligned_cols=69 Identities=3% Similarity=0.090 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHh
Q psy7568 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGV 79 (154)
Q Consensus 8 ~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~ 79 (154)
+.+.-.+.+|++...+-.+..+-.... ........+-.+...+--+-.++-|....+.+++.||-+-.-
T Consensus 227 ~ILKQAifIFvlFQ~ss~VFl~~qt~~---~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~k 295 (305)
T PF04789_consen 227 TILKQAIFIFVLFQASSCVFLLCQTFK---FNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSSK 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeee---ecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHhh
Confidence 344556677777777775544443331 122223345566667777789999999999999988866543
No 50
>PF10445 DUF2456: Protein of unknown function (DUF2456); InterPro: IPR018852 This entry represents a family of uncharacterised proteins.
Probab=32.97 E-value=89 Score=19.68 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNIVQ 28 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v~~ 28 (154)
.++.|-++.-++.|++.|-|..-+.
T Consensus 27 ~~~~rgli~av~~f~~~WP~tigIl 51 (94)
T PF10445_consen 27 QQAIRGLILAVLIFLLLWPITIGIL 51 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 4678888999999999998876543
No 51
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=32.44 E-value=67 Score=18.41 Aligned_cols=9 Identities=33% Similarity=0.718 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q psy7568 18 TVCWLPLNI 26 (154)
Q Consensus 18 ~~cw~Py~v 26 (154)
.++|+||.+
T Consensus 37 ~~~~iP~~~ 45 (67)
T smart00714 37 FCCCLPCCL 45 (67)
T ss_pred HHHHHHHhc
Confidence 355566643
No 52
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=32.24 E-value=76 Score=16.08 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q psy7568 7 IKMMVLVVIVYTVC 20 (154)
Q Consensus 7 ~~~~~~vv~~F~~c 20 (154)
.|+++..++.|+++
T Consensus 4 LK~~Vy~vV~ffv~ 17 (36)
T PF02532_consen 4 LKIFVYTVVIFFVS 17 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEeehhhHHHHHH
Confidence 45555566665554
No 53
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=31.50 E-value=61 Score=20.79 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=17.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 1 MDKYFMIKMMVLVVIVYTVCWLPLNIVQ 28 (154)
Q Consensus 1 ~~~~k~~~~~~~vv~~F~~cw~Py~v~~ 28 (154)
|.+...+-..+++++.+...|.=++-+-
T Consensus 1 ~~~~~~~~l~~lvl~L~~~l~~qs~~i~ 28 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGGWLWYQSQRID 28 (110)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777766665554433
No 54
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=31.30 E-value=1.1e+02 Score=17.53 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHH-HHHHHHHHH
Q psy7568 3 KYFMIKMMVLVVIVY-TVCWLPLNI 26 (154)
Q Consensus 3 ~~k~~~~~~~vv~~F-~~cw~Py~v 26 (154)
++|...+.+.++++| ++|-+-..+
T Consensus 28 RrRrc~~~v~~v~~~~~~c~~S~~l 52 (60)
T PF06072_consen 28 RRRRCRLAVAIVFAVVALCVLSGGL 52 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666566666666 566554433
No 55
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=30.35 E-value=1.7e+02 Score=19.54 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=16.2
Q ss_pred HHhhhcCccchhhHhhcCHHHHH
Q psy7568 52 WLAMSHPCYNPVIYCWMNGRFRV 74 (154)
Q Consensus 52 ~L~~~ns~~NPiiY~~~~~~fR~ 74 (154)
+-...|..++.++|-....=+||
T Consensus 137 p~~~~~~~~~~il~~~~~~l~~k 159 (160)
T PF04093_consen 137 PTLLLNALIAIILYPPVFKLLRK 159 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44466888888888877766654
No 56
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=30.16 E-value=96 Score=18.51 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7568 14 VIVYTVCWLPLNIVQIIADW 33 (154)
Q Consensus 14 v~~F~~cw~Py~v~~l~~~~ 33 (154)
+..+++|-+|++++..+..|
T Consensus 23 l~~vll~LtPlfiisa~lSw 42 (74)
T PF15086_consen 23 LTTVLLILTPLFIISAVLSW 42 (74)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 34556777777777655554
No 57
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=30.05 E-value=2.3e+02 Score=22.92 Aligned_cols=27 Identities=7% Similarity=0.349 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 7 IKMMVLVVIVYTVCWLPLNIVQIIADW 33 (154)
Q Consensus 7 ~~~~~~vv~~F~~cw~Py~v~~l~~~~ 33 (154)
...++.-++.+++-.+||-+..++...
T Consensus 222 ~~~ivM~lV~~VirLTPYgV~AlMtkv 248 (458)
T COG1823 222 LQSIVMKLVRLVIRLTPYGVLALMTKV 248 (458)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344556678889999999999887753
No 58
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=29.57 E-value=1.9e+02 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 5 FMIKMMVLVVIVYTVCWLPLNIVQIIA 31 (154)
Q Consensus 5 k~~~~~~~vv~~F~~cw~Py~v~~l~~ 31 (154)
+.+-++-.++.+.++|-+|..++.++.
T Consensus 323 ~~LP~m~svl~~i~yglFPlV~llall 349 (942)
T PRK13735 323 RTLPMMQTILMGIAIGIFPLLVLAAVF 349 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677777778888877765443
No 59
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=29.42 E-value=1.3e+02 Score=22.22 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7568 6 MIKMMVLVVIVYTVCWLPLN 25 (154)
Q Consensus 6 ~~~~~~~vv~~F~~cw~Py~ 25 (154)
.+..++++++++++|.+|..
T Consensus 112 ~l~~~~~~~~v~a~~lFPlW 131 (224)
T PF03839_consen 112 YLIGALLLVGVIAICLFPLW 131 (224)
T ss_pred HHHHHHHHHHHHHHHhhhcC
Confidence 34557788888899999844
No 60
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=27.63 E-value=3e+02 Score=24.44 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cC----ccccchHHHHHHHH-HHHhhhcCccch
Q psy7568 3 KYFMIKMMVLVVIVYTVCWLPLNIVQIIADWF--PN----LQQLKWFPVLYFLV-HWLAMSHPCYNP 62 (154)
Q Consensus 3 ~~k~~~~~~~vv~~F~~cw~Py~v~~l~~~~~--~~----~~~~~~~~~~~~~~-~~L~~~ns~~NP 62 (154)
|.|+++.++.||+.|++-|-=.-++.++.++. +. .........++.++ ..-+|.|+-..+
T Consensus 444 EYRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~~~~~~l~~~gin~~W~aiFhAVSAFnNAGFsL 510 (800)
T TIGR00934 444 EYRALKCLCSIVLVYFLGFNILGFVLLLPWINHVKTYSEVVRSKGVSPTWWGFFTAMSAFANLGLTL 510 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHhhcCccHHHHHHHHHHHHHhcCCCCc
Confidence 56899999999999998887665555544432 10 01112223344444 456666665544
No 61
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=27.18 E-value=1.2e+02 Score=19.83 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 10 MVLVVIVYTVCWLPLNIVQIIADW 33 (154)
Q Consensus 10 ~~~vv~~F~~cw~Py~v~~l~~~~ 33 (154)
+.+||+-|++.| |.-+..+.+.+
T Consensus 12 Ia~mVlGFi~fW-PlGla~Lay~i 34 (115)
T PF11014_consen 12 IAAMVLGFIVFW-PLGLALLAYMI 34 (115)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456666676644 66666555554
No 62
>COG2383 Uncharacterized conserved protein [Function unknown]
Probab=26.76 E-value=93 Score=19.88 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVC 20 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~c 20 (154)
+|+.|+++.++.+|++.
T Consensus 37 kk~ikvvl~liGvyils 53 (109)
T COG2383 37 KKAIKVVLLLIGVYILS 53 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999998764
No 63
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=26.50 E-value=2.4e+02 Score=22.24 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCH
Q psy7568 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNG 70 (154)
Q Consensus 7 ~~~~~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~ 70 (154)
..|+.=.+++-++-|+-|+...+..-..- .--......+..+..+|-|+|+.+-+.|++++--
T Consensus 234 ~elv~HHIVTllLI~lSY~fhftr~GlAI-~itmDvSD~~Ls~sK~lnYl~~~l~~~iF~iFv~ 296 (395)
T COG5058 234 KELVFHHIVTLLLIWLSYVFHFTRMGLAI-YITMDVSDFFLSLSKTLNYLNSVLATFIFGIFVF 296 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceE-EEEEeccHHHHHHHHHHHHhhchhHHHHHHHHHH
Confidence 45666678888899999988765543210 1123456788899999999999988888876543
No 64
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=25.74 E-value=1.1e+02 Score=15.88 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=20.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 1 MDKYFMIKMMVLVVIVYTVCWLPLNIVQI 29 (154)
Q Consensus 1 ~~~~k~~~~~~~vv~~F~~cw~Py~v~~l 29 (154)
|.||+....++.-++...+-++.|-++.+
T Consensus 6 m~RR~lmN~ll~Gava~~a~~~lyP~~~f 34 (39)
T PF08802_consen 6 MSRRQLMNLLLGGAVAVPAGGMLYPYVKF 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHHHHHHHhhhheeE
Confidence 45777777777777777777777766543
No 65
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=25.59 E-value=65 Score=15.52 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy7568 5 FMIKMMVLVVIVYTVCWLPL 24 (154)
Q Consensus 5 k~~~~~~~vv~~F~~cw~Py 24 (154)
|...++++++++. +.|.|+
T Consensus 11 r~~l~~l~~v~l~-ll~~Ps 29 (30)
T PF08525_consen 11 RRALIALSAVVLV-LLLWPS 29 (30)
T ss_pred HHHHHHHHHHHHH-HHhccC
Confidence 3344433333333 555564
No 66
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=24.46 E-value=41 Score=14.91 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=6.3
Q ss_pred cCHHHHHHHH
Q psy7568 68 MNGRFRVSFY 77 (154)
Q Consensus 68 ~~~~fR~~~~ 77 (154)
.|.+||+-|.
T Consensus 11 SNddFrkmfl 20 (21)
T PF05391_consen 11 SNDDFRKMFL 20 (21)
T ss_pred chHHHHHHHc
Confidence 4667777653
No 67
>KOG4686|consensus
Probab=23.63 E-value=93 Score=24.49 Aligned_cols=22 Identities=23% Similarity=0.744 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7568 7 IKMMVLVVIVYTVCWLPLNIVQ 28 (154)
Q Consensus 7 ~~~~~~vv~~F~~cw~Py~v~~ 28 (154)
..++.+|.+.|.+.|.||.-+.
T Consensus 266 fw~~~iicv~yyva~fPFi~lg 287 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLG 287 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 5788999999999999998653
No 68
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=23.61 E-value=1.2e+02 Score=20.64 Aligned_cols=27 Identities=4% Similarity=0.294 Sum_probs=22.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHH
Q psy7568 1 MDKYFMIKMMVLVVIVYTVCWLPLNIV 27 (154)
Q Consensus 1 ~~~~k~~~~~~~vv~~F~~cw~Py~v~ 27 (154)
+||.+..-.+++.++..++.++|..-.
T Consensus 1 IQRIQTlyLlla~i~~~~~l~~Pi~~~ 27 (149)
T PF14126_consen 1 IQRIQTLYLLLAAILMGVLLFFPIWSF 27 (149)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 578889999999999998889997754
No 69
>KOG2576|consensus
Probab=23.52 E-value=74 Score=25.78 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy7568 4 YFMIKMMVLVVIVYTVCWLPLNI 26 (154)
Q Consensus 4 ~k~~~~~~~vv~~F~~cw~Py~v 26 (154)
-++++..++++..|.+|..|+.-
T Consensus 221 ~~vikL~~vv~~~F~~s~gPf~~ 243 (500)
T KOG2576|consen 221 LNVIKLGIVVLIPFAASFGPFIY 243 (500)
T ss_pred hhHHHHHHHHHHHHHHHhccHHH
Confidence 46789999999999999999743
No 70
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=23.49 E-value=2.4e+02 Score=19.70 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHHhhhcCc
Q psy7568 40 LKWFPVLYFLVHWLAMSHPC 59 (154)
Q Consensus 40 ~~~~~~~~~~~~~L~~~ns~ 59 (154)
.....|.-..+.+|.|+|..
T Consensus 154 FTL~fWCeFtAsFLfFLN~i 173 (184)
T PF15108_consen 154 FTLMFWCEFTASFLFFLNGI 173 (184)
T ss_pred hHHHHHHHHHHHHHHHHhhh
Confidence 34455555555566666653
No 71
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.33 E-value=96 Score=19.97 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHH
Q psy7568 9 MMVLVVIVYTVCWLPLNIVQIIA-DWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGR 71 (154)
Q Consensus 9 ~~~~vv~~F~~cw~Py~v~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~ 71 (154)
.++++.++|++.|+=.++..... .|+ ++.+..+...+++.....=|+|-.--|++
T Consensus 5 ~Fi~~~~~~~~~Wi~~N~~~~~~~~fD--------pyPFilLnl~lS~~Aa~~ap~IlmsQNRq 60 (108)
T PF06210_consen 5 TFIIIFTVFLAVWILLNILAPPRPAFD--------PYPFILLNLVLSLEAAYQAPLILMSQNRQ 60 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCC--------CccHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 45677788888888777655543 221 11244455667777777888887665543
No 72
>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane
Probab=22.30 E-value=60 Score=17.86 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7568 8 KMMVLVVIVYTVCWLPLNIVQI 29 (154)
Q Consensus 8 ~~~~~vv~~F~~cw~Py~v~~l 29 (154)
+-+.+-++..++.|+|-.+..+
T Consensus 25 ~~~~inl~Ltl~g~iPg~ihA~ 46 (51)
T PF01679_consen 25 KDFWINLLLTLLGWIPGVIHAL 46 (51)
T ss_pred hhhHHHHHHHHHHHHHHHHHee
Confidence 3345555556666777655443
No 73
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=21.90 E-value=1.2e+02 Score=22.39 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy7568 6 MIKMMVLVVIVYTVCWLPLN 25 (154)
Q Consensus 6 ~~~~~~~vv~~F~~cw~Py~ 25 (154)
.+..++++++++++|.+|..
T Consensus 120 ~l~~~~~~~~ila~~lFPlW 139 (232)
T TIGR00869 120 YLIVILVVSIILALVLFPLW 139 (232)
T ss_pred HHHHHHHHHHHHHHhhcccC
Confidence 45567788899999999844
No 74
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=21.69 E-value=3e+02 Score=23.66 Aligned_cols=46 Identities=11% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHHhhhcCccchhhHhhcCHHHHHHHHHhhhc
Q psy7568 11 VLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNGRFRVSFYGVFRK 82 (154)
Q Consensus 11 ~~vv~~F~~cw~Py~v~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 82 (154)
.++..+|+.+|.|+.++.-+....+.... .+.....++.+++++++
T Consensus 169 ~llCL~fL~~~f~~~lvk~~~~~~~~~~~--------------------------~l~~~~~~~yvk~LL~~ 214 (617)
T PF14752_consen 169 QLLCLAFLSLWFPYLLVKSFRNRTGKGSE--------------------------DLQSSYYEEYVKSLLRR 214 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------------------ccccccHHHHHHHHhcC
Confidence 45777889999999887655443211000 55567778888888864
Done!