RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7568
         (154 letters)



>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 58.1 bits (141), Expect = 6e-11
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 6   MIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIY 65
             KM+++VV+V+ +CWLP +IV ++ D    L   +  P    +  WLA  + C NP+IY
Sbjct: 193 AAKMLLVVVVVFVLCWLPYHIVLLL-DSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251


>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
           Provisional.
          Length = 417

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 12/108 (11%)

Query: 7   IKMMVLVVIVYTVCWLPLNIVQIIADWFP----------NLQQLKWFPVLYFLVHWLAMS 56
           I ++ +++I   +CW+PLNIV + A  +           ++           L   ++++
Sbjct: 312 IIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLT 371

Query: 57  HPCYNPVIYCWMNGRFRVSFYGVFRKVPILKHTVKKYDKSNLMSQAVL 104
           H C NP+IY  +   FR+    +FR   I  +    + KS++ S  + 
Sbjct: 372 HCCINPLIYTLIGENFRMHLLMIFRN--IFTNAKFSFRKSSISSSIIF 417


>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
           protein; Provisional.
          Length = 335

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 5/71 (7%)

Query: 7   IKMMVLVVIVYTVCWLPLNIVQI-----IADWFPNLQQLKWFPVLYFLVHWLAMSHPCYN 61
           IK+++++VI++ + WLP N+        I  +    + +K+      +   +++SH C N
Sbjct: 243 IKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCIN 302

Query: 62  PVIYCWMNGRF 72
           P+IY +++  F
Sbjct: 303 PLIYAFVSEFF 313


>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
          Length = 323

 Score = 34.5 bits (79), Expect = 0.012
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 7   IKMMVLVVIVYTVCWLPLNIVQIIADWFP----NLQQLKWFPVLYFL--VHWLAMSHPCY 60
           IK+++ VV    V W+P NIV  I         ++    +  ++Y +     ++  H C 
Sbjct: 228 IKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCV 287

Query: 61  NPVIYCWMNGRFRVSFYGVFRKV 83
           NP+IY ++   F+  F  +F + 
Sbjct: 288 NPIIYAFVGKNFKKVFKNMFCRT 310


>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
          Length = 2084

 Score = 29.3 bits (65), Expect = 0.98
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 81  RKVPILKHTVKKYDKSNL-MSQAVLSDHMSCRHNIRS 116
            K  I +H VK   K N+     V     +   NI +
Sbjct: 501 EKEEINEHEVKGLPKENINYILKVHMRFENNHFNIHN 537


>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
          permease components [Defense mechanisms].
          Length = 567

 Score = 28.9 bits (65), Expect = 1.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 2  DKYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLV 50
           K  ++ +++L++       LPL I +II     +L +L    +L  L+
Sbjct: 13 YKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL 61


>gnl|CDD|216892 pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil,
           thiamine, allantoin. 
          Length = 438

 Score = 27.3 bits (61), Expect = 3.7
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 11  VLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCWMNG 70
           +   I      L L  +     W   +       ++ F + WL         +++  ++ 
Sbjct: 103 IQAWIGSEALLLMLGKIFGHWLWIGAIPGTGLTELVTFFIFWLVH-----LYIVWLGVS- 156

Query: 71  RFRVSF 76
             RV F
Sbjct: 157 AIRVFF 162


>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
          Length = 338

 Score = 26.8 bits (59), Expect = 4.7
 Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 5   FMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWF---PVLYFLVHWLAMSHPCYN 61
           F I++++L  +   +  + + I +I   +  N           +L  ++  +   H   N
Sbjct: 237 FFIRILILSFLCIQIPNIAILICEIAFLYIANNSCF-GLAQREILQIIIRLMPEIHCFSN 295

Query: 62  PVIYCWMNGRFRVSFYGVFR 81
           P++Y +  G FR+ F   F+
Sbjct: 296 PLVYAFTGGDFRLRFTACFQ 315


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.140    0.470 

Gapped
Lambda     K      H
   0.267   0.0698    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,710,533
Number of extensions: 670112
Number of successful extensions: 768
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 25
Length of query: 154
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 65
Effective length of database: 6,990,096
Effective search space: 454356240
Effective search space used: 454356240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.0 bits)