RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7568
(154 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 104 bits (262), Expect = 8e-28
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 5/116 (4%)
Query: 6 MIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIY 65
++KMM++VV + +CWLP +I ++ P+L K+ +Y + WLAMS YNP+IY
Sbjct: 246 VVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIY 305
Query: 66 CWMNGRFRVSFYGVFRKVPILKHTVKKYDKSNLMSQAVLSDHMSCRHNIRSIRCNT 121
C +N RFR+ F FR P + Y+ + S L S + R T
Sbjct: 306 CCLNDRFRLGFKHAFRCCP--FISAGDYEGLEMKSTRYLQTQGSVY---KVSRLET 356
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 86.8 bits (215), Expect = 5e-21
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYC 66
+++++VV V+ CW P+ + + + + L + C NP++Y
Sbjct: 336 TRLVLVVVAVFVGCWTPVQVFVLA-QGLGVQPSSETAVAILRFCTALGYVNSCLNPILYA 394
Query: 67 WMNGRFRVSF 76
+++ F+ F
Sbjct: 395 FLDENFKACF 404
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 71.6 bits (176), Expect = 9e-16
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M++++VI + +CWLP V + P+ + + A + YNPVIY
Sbjct: 253 RMVIIMVIAFLICWLPYAGVAFYIFTHQ---GSDFGPIFMTIPAFFAKTSAVYNPVIYIM 309
Query: 68 MNGRFRVSFYGVFR 81
MN +FR
Sbjct: 310 MNKQFRNCMVTTLC 323
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 67.7 bits (165), Expect = 3e-14
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 7 IKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYC 66
+M+++VV V+ VCW P++I II + + + V + L ++ C NPV+Y
Sbjct: 382 TRMVLVVVAVFIVCWTPIHIYVII-KALITIPETTFQTVSWHFCIALGYTNSCLNPVLYA 440
Query: 67 WMNGRFRVSFYGVFRK 82
+++ F+ F
Sbjct: 441 FLDENFKRCFREFCIP 456
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 67.3 bits (164), Expect = 4e-14
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 3/104 (2%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K+ +++V + + W P +V ++A + P P L A + +NP+IY
Sbjct: 261 KISIVIVSQFLLSWSPYAVVALLAQFGP---LEWVTPYAAQLPVMFAKASAIHNPMIYSV 317
Query: 68 MNGRFRVSFYGVFRKVPILKHTVKKYDKSNLMSQAVLSDHMSCR 111
+ +FR + F V K + + ++ + S
Sbjct: 318 SHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSD 361
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 52.8 bits (126), Expect = 5e-09
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 6 MIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIY 65
K + ++V ++ +CWLPL+I+ + P+ + L +L L+ ++ NP IY
Sbjct: 393 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW--LMYLAIVLSHTNSVVNPFIY 450
Query: 66 CWMNGRFRVSF 76
+ FR +F
Sbjct: 451 AYRIREFRQTF 461
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 51.8 bits (124), Expect = 9e-09
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIA------DWFPNLQQLKWFPVLYFLVHWLAMSHPCYN 61
K V++++ + CWLP I I + + LA H C N
Sbjct: 413 KTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLN 472
Query: 62 PVIYCWMNGRFRVSFYGVFRK 82
P++Y ++ +F+ S
Sbjct: 473 PILYAFLGAKFKTSAQHALTS 493
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 48.3 bits (114), Expect = 2e-07
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 6 MIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIY 65
++K +++V+ V+ CW PL I+ ++ F YFL LA+ + NP+IY
Sbjct: 419 LLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFL--VLAVLNSGTNPIIY 476
Query: 66 CWMNGRFRVSF 76
N R +F
Sbjct: 477 TLTNKEMRRAF 487
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 48.1 bits (114), Expect = 2e-07
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 4 YFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPV 63
K + ++V ++ +CWLPL+I+ + P+ + L +L L+ ++ NP
Sbjct: 350 VHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW--LMYLAIVLSHTNSVVNPF 407
Query: 64 IYCWMNGRFRVSFYGVFRK 82
IY + FR +F + R
Sbjct: 408 IYAYRIREFRQTFRKIIRS 426
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 45.9 bits (108), Expect = 1e-06
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+M+ +V+ + VCWLP + ++ P LY WL + NPVIY
Sbjct: 401 QMVAIVLGAFIVCWLPFFLTHVLNTHCQTCH---VSPELYSATTWLGYVNSALNPVIYTT 457
Query: 68 MNGRFRVSF 76
N FR +F
Sbjct: 458 FNIEFRKAF 466
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 44.7 bits (105), Expect = 3e-06
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
+ ++ +++ + + W P N++ +I + + + Y WL + NP Y
Sbjct: 388 RTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGY----WLCYINSTINPACYAL 443
Query: 68 MNGRFRVSF 76
N F+ +F
Sbjct: 444 CNATFKKTF 452
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 44.7 bits (105), Expect = 3e-06
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + ++ + +CW+P I ++ + N L+ WL + NP+IY
Sbjct: 373 KQLGFIMAAFILCWIPYFIFFMVIAFCKNCCN----EHLHMFTIWLGYINSTLNPLIYPL 428
Query: 68 MNGRFRVSF 76
N F+ +F
Sbjct: 429 CNENFKKTF 437
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 43.9 bits (103), Expect = 6e-06
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + +++ +T+CWLP IV I+ NL + +Y L++W+ + +NP+IYC
Sbjct: 408 KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIR----KEVYILLNWIGYVNSGFNPLIYCR 463
Query: 68 MNGRFRVSF 76
+ FR++F
Sbjct: 464 -SPDFRIAF 471
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 42.0 bits (99), Expect = 2e-05
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + +++ V+T+CWLP +V I+ + +L L+ +WL ++ NP+IYC
Sbjct: 232 KTLGIIMGVFTLCWLPFFLVNIVNVFNRDL----VPDWLFVAFNWLGYANSAMNPIIYCR 287
Query: 68 MNGRFRVSF 76
+ FR +F
Sbjct: 288 -SPDFRKAF 295
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 41.1 bits (96), Expect = 6e-05
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 8 KMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNPVIYCW 67
K + +++ +T+CWLP IV I+ NL +Y L++W+ + +NP+IYC
Sbjct: 422 KTLGIIMGTFTLCWLPFFIVNIVHVIQDNL----IRKEVYILLNWIGYVNSGFNPLIYCR 477
Query: 68 MNGRFRVSF 76
+ FR++F
Sbjct: 478 -SPDFRIAF 485
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 6.3
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 97 NLMSQAVLSDHMSCRHNIRSIRCNTKRAEGDLDELECHRFISSKSARSSHLLSV 150
M AV D + R N I N R + + R+ L+ +
Sbjct: 1791 MTMQVAVPRDELG-RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.140 0.470
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,433,821
Number of extensions: 129724
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 21
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.8 bits)