RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7568
         (154 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 56.5 bits (135), Expect = 8e-11
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 3   KYFMIKMMVLVVIVYTVCWLPLNIVQIIADWFPNLQQLKWFPVLYFLVHWLAMSHPCYNP 62
           +  + +M++++VI + +CWLP   V              + P+   +  + A +   YNP
Sbjct: 247 EKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD---FGPIFMTIPAFFAKTSAVYNP 303

Query: 63  VIYCWMNGRFRVSFYGVFR 81
           VIY  MN +FR        
Sbjct: 304 VIYIMMNKQFRNCMVTTLC 322


>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443
          {Bacteroides vulgatus [TaxId: 821]}
          Length = 127

 Score = 24.0 bits (52), Expect = 7.2
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 14 VIVYTVCWLPLNIVQIIADWFPNLQQLKW 42
          V+   V  LP+   ++I   F   +    
Sbjct: 4  VVTRDVNKLPVAAREMIGKHFSQTKVAYI 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.140    0.470 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 627,305
Number of extensions: 27497
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (22.8 bits)