Query psy7569
Match_columns 71
No_of_seqs 102 out of 139
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:46:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewl_A Uncharacterized conserv 51.3 9.6 0.00033 22.1 2.2 27 36-62 114-140 (142)
2 3eur_A Uncharacterized protein 48.2 6.2 0.00021 23.2 1.0 25 36-60 118-142 (142)
3 2v2f_A Penicillin binding prot 46.8 6.6 0.00023 18.5 0.8 11 38-48 10-20 (26)
4 4fo5_A Thioredoxin-like protei 37.5 16 0.00056 21.3 1.7 25 36-60 118-142 (143)
5 1cee_B Wiskott-aldrich syndrom 37.3 21 0.0007 20.2 2.0 29 32-61 17-45 (59)
6 1ik9_C DNA ligase IV; DNA END 34.9 31 0.0011 18.0 2.4 27 37-63 10-36 (37)
7 3fk8_A Disulphide isomerase; A 34.6 17 0.00057 21.1 1.4 26 36-61 96-131 (133)
8 2lrn_A Thiol:disulfide interch 29.6 27 0.00094 20.5 1.8 26 36-61 114-139 (152)
9 3v67_A Sensor protein CPXA; PA 28.6 54 0.0019 21.2 3.2 28 38-65 61-92 (138)
10 2qme_I CRIB domain of the seri 28.2 13 0.00046 19.2 0.1 12 32-43 10-22 (36)
11 3hcz_A Possible thiol-disulfid 28.1 36 0.0012 19.4 2.1 26 36-61 116-141 (148)
12 3arc_J Photosystem II reaction 25.3 17 0.00059 20.0 0.2 9 20-28 3-11 (40)
13 2kuc_A Putative disulphide-iso 25.2 39 0.0013 19.2 1.8 30 36-65 91-123 (130)
14 3fkf_A Thiol-disulfide oxidore 24.4 37 0.0013 19.3 1.7 26 36-61 119-144 (148)
15 2odb_B Serine/threonine-protei 21.7 19 0.00064 18.4 -0.1 11 33-43 11-22 (35)
16 1ej5_A WAsp, wiskott-aldrich s 21.6 86 0.003 19.8 3.1 30 31-61 4-33 (107)
17 2kqa_A Cerato-platanin; elicit 21.2 31 0.0011 23.0 0.9 14 19-37 40-53 (129)
18 2ov2_I Serine/threonine-protei 21.0 20 0.00067 18.3 -0.1 10 33-42 11-21 (35)
No 1
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=51.25 E-value=9.6 Score=22.10 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.6
Q ss_pred ccccCCCCeeccCCCccHHHHHHHhCC
Q psy7569 36 LGYDWSGKKIMKPEQSDQLDDFLSKME 62 (71)
Q Consensus 36 IGYDidGkkI~K~~~~d~lD~fL~~~d 62 (71)
+=+|.+|+.+.+....++|.++|+++-
T Consensus 114 ~lid~~G~i~~~~~~~~~l~~~l~~~~ 140 (142)
T 3ewl_A 114 YLLDGRKRVILKDTSMEQLIDYLATQA 140 (142)
T ss_dssp EEECTTCBEEECSCCHHHHHHHHHC--
T ss_pred EEECCCCCEEecCCCHHHHHHHHHHHc
Confidence 446889999998888999999998753
No 2
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=48.21 E-value=6.2 Score=23.21 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.5
Q ss_pred ccccCCCCeeccCCCccHHHHHHHh
Q psy7569 36 LGYDWSGKKIMKPEQSDQLDDFLSK 60 (71)
Q Consensus 36 IGYDidGkkI~K~~~~d~lD~fL~~ 60 (71)
+=+|.+|+.+.+....++|++||+.
T Consensus 118 ~lid~~G~i~~~~~~~~~l~~~l~e 142 (142)
T 3eur_A 118 YLLDKNKTVLLKDATLQKVEQYLAE 142 (142)
T ss_dssp EEECTTCBEEEEEECHHHHHHHHHC
T ss_pred EEECCCCcEEecCCCHHHHHHHHhC
Confidence 3468899999988888999999863
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=46.79 E-value=6.6 Score=18.54 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=9.1
Q ss_pred ccCCCCeeccC
Q psy7569 38 YDWSGKKIMKP 48 (71)
Q Consensus 38 YDidGkkI~K~ 48 (71)
||.+|+.|..-
T Consensus 10 YD~~g~~i~~l 20 (26)
T 2v2f_A 10 YDNKNQLIADL 20 (26)
T ss_pred EeCCCCEeeec
Confidence 89999988754
No 4
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=37.51 E-value=16 Score=21.33 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.3
Q ss_pred ccccCCCCeeccCCCccHHHHHHHh
Q psy7569 36 LGYDWSGKKIMKPEQSDQLDDFLSK 60 (71)
Q Consensus 36 IGYDidGkkI~K~~~~d~lD~fL~~ 60 (71)
+=.|.+|+-+.+-....+|+++|+.
T Consensus 118 ~lid~~G~i~~~~~~~~~l~~~l~~ 142 (143)
T 4fo5_A 118 FLINDEGVIIAANVTPEKLTEILKA 142 (143)
T ss_dssp EEECTTSBEEEESCCHHHHHHHHTC
T ss_pred EEECCCCEEEEccCCHHHHHHHHHh
Confidence 4478899999998889999999875
No 5
>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}
Probab=37.33 E-value=21 Score=20.22 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=16.8
Q ss_pred CCCcccccCCCCeeccCCCccHHHHHHHhC
Q psy7569 32 DLPHLGYDWSGKKIMKPEQSDQLDDFLSKM 61 (71)
Q Consensus 32 d~~HIGYDidGkkI~K~~~~d~lD~fL~~~ 61 (71)
---|||||-+..-.. ..-..+..+||..+
T Consensus 17 Hv~HvG~d~~~gf~~-~g~pp~W~~ll~~s 45 (59)
T 1cee_B 17 HVSHVGWDPQNGFDV-NNLDPDLRSLFSRA 45 (59)
T ss_dssp EEEEECCCTTTCCCC-SSCCHHHHHHHTTT
T ss_pred CcceeccCCCCCccc-CCCCHHHHHHHHHc
Confidence 345899997544221 12246777777653
No 6
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=34.93 E-value=31 Score=18.00 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.2
Q ss_pred cccCCCCeeccCCCccHHHHHHHhCCC
Q psy7569 37 GYDWSGKKIMKPEQSDQLDDFLSKMEN 63 (71)
Q Consensus 37 GYDidGkkI~K~~~~d~lD~fL~~~dd 63 (71)
-||.-|---.++...++|-..|.+|..
T Consensus 10 n~D~yGDSY~rd~t~~eLk~il~~m~~ 36 (37)
T 1ik9_C 10 EYDCYGDSYFIDTDLNQLKEVFSGIKN 36 (37)
T ss_dssp SBCTTSCBSSSCCCHHHHHHHHHTCC-
T ss_pred hcccccccccCcCCHHHHHHHHHHccc
Confidence 488889999999999999999999854
No 7
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=34.62 E-value=17 Score=21.09 Aligned_cols=26 Identities=19% Similarity=0.278 Sum_probs=18.7
Q ss_pred ccccCCCCeeccC----------CCccHHHHHHHhC
Q psy7569 36 LGYDWSGKKIMKP----------EQSDQLDDFLSKM 61 (71)
Q Consensus 36 IGYDidGkkI~K~----------~~~d~lD~fL~~~ 61 (71)
+=||.+|+.+.+. ....+|.+||+++
T Consensus 96 ~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 96 VVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp EEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EEECCCCCEEEEecCCcccccccCCHHHHHHHHHHh
Confidence 4478889988653 3467888888764
No 8
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=29.59 E-value=27 Score=20.53 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=19.9
Q ss_pred ccccCCCCeeccCCCccHHHHHHHhC
Q psy7569 36 LGYDWSGKKIMKPEQSDQLDDFLSKM 61 (71)
Q Consensus 36 IGYDidGkkI~K~~~~d~lD~fL~~~ 61 (71)
+=+|.+|+.+.+-..+.+|.++|++.
T Consensus 114 ~lid~~G~i~~~~~~~~~l~~~l~~l 139 (152)
T 2lrn_A 114 ILVDPEGKIVAKELRGDDLYNTVEKF 139 (152)
T ss_dssp EEECTTSEEEEECCCTTHHHHHHHHH
T ss_pred EEECCCCeEEEeeCCHHHHHHHHHHH
Confidence 34788999988876777888877754
No 9
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=28.64 E-value=54 Score=21.23 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=23.0
Q ss_pred ccCCCCeeccCCCc----cHHHHHHHhCCCCC
Q psy7569 38 YDWSGKKIMKPEQS----DQLDDFLSKMENPN 65 (71)
Q Consensus 38 YDidGkkI~K~~~~----d~lD~fL~~~ddp~ 65 (71)
=|.+|+-|...... -+|-+|+-.+|+++
T Consensus 61 ~d~eG~Il~~~~~~~~~~ralrnFi~~sd~~~ 92 (138)
T 3v67_A 61 SDYNGNVLTTDKRSNFQLRAMQNFVTSIEDYN 92 (138)
T ss_dssp ECTTSCEECCCCSCHHHHHHHHHHHHHCSCTT
T ss_pred EcCCCCEecCCcccchhHHHHHHHHHhccCcc
Confidence 37889999987654 47999999999986
No 10
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=28.16 E-value=13 Score=19.16 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=8.3
Q ss_pred CCCcccccC-CCC
Q psy7569 32 DLPHLGYDW-SGK 43 (71)
Q Consensus 32 d~~HIGYDi-dGk 43 (71)
---|||||- .|.
T Consensus 10 H~~Hvg~d~~tG~ 22 (36)
T 2qme_I 10 HTIHVGFDAVTGE 22 (36)
T ss_dssp EEEEECCBTTTTB
T ss_pred CeeEcccCCCCCc
Confidence 345999996 454
No 11
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=28.15 E-value=36 Score=19.37 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=20.7
Q ss_pred ccccCCCCeeccCCCccHHHHHHHhC
Q psy7569 36 LGYDWSGKKIMKPEQSDQLDDFLSKM 61 (71)
Q Consensus 36 IGYDidGkkI~K~~~~d~lD~fL~~~ 61 (71)
+=+|.+|+.+.+.....+++++|+.+
T Consensus 116 ~lid~~G~i~~~~~g~~~~~~~l~~l 141 (148)
T 3hcz_A 116 YVLDKNKVIIAKRIGYENLDDFLVQY 141 (148)
T ss_dssp EEECTTCBEEEESCCGGGHHHHHHHH
T ss_pred EEECCCCcEEEecCCHHHHHHHHHHH
Confidence 34788999998887778888888754
No 12
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=25.29 E-value=17 Score=20.04 Aligned_cols=9 Identities=33% Similarity=0.564 Sum_probs=7.0
Q ss_pred Ccccccccc
Q psy7569 20 NTVGNIPMN 28 (71)
Q Consensus 20 NtiGnVPl~ 28 (71)
++.|+|||.
T Consensus 3 ~~tGRiPLW 11 (40)
T 3arc_J 3 SEGGRIPLW 11 (40)
T ss_dssp CCTTSSCHH
T ss_pred CCcCcccEE
Confidence 567999984
No 13
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.21 E-value=39 Score=19.21 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=20.6
Q ss_pred ccccCCCCeeccC---CCccHHHHHHHhCCCCC
Q psy7569 36 LGYDWSGKKIMKP---EQSDQLDDFLSKMENPN 65 (71)
Q Consensus 36 IGYDidGkkI~K~---~~~d~lD~fL~~~ddp~ 65 (71)
+=||.+|+.+.+- ...++|.+||++.-.|+
T Consensus 91 ~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~ 123 (130)
T 2kuc_A 91 LFINSSGEVVYRLVGAEDAPELLKKVKLGVESE 123 (130)
T ss_dssp EEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred EEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 3477889887653 35678888888765544
No 14
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=24.44 E-value=37 Score=19.30 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.6
Q ss_pred ccccCCCCeeccCCCccHHHHHHHhC
Q psy7569 36 LGYDWSGKKIMKPEQSDQLDDFLSKM 61 (71)
Q Consensus 36 IGYDidGkkI~K~~~~d~lD~fL~~~ 61 (71)
+=+|.+|+.+.+....++|.++|++.
T Consensus 119 ~lid~~G~i~~~~~~~~~l~~~l~~l 144 (148)
T 3fkf_A 119 ILLSPTGKILARDIQGEALTGKLKEL 144 (148)
T ss_dssp EEECTTSBEEEESCCHHHHHHHHHHH
T ss_pred EEECCCCeEEEecCCHHHHHHHHHHH
Confidence 44789999998888778888888753
No 15
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=21.73 E-value=19 Score=18.42 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=8.1
Q ss_pred CCcccccCC-CC
Q psy7569 33 LPHLGYDWS-GK 43 (71)
Q Consensus 33 ~~HIGYDid-Gk 43 (71)
--|||||.+ |.
T Consensus 11 ~~Hvg~d~~tG~ 22 (35)
T 2odb_B 11 RVHTSFDPKEGK 22 (35)
T ss_dssp EEEEEEETTTTE
T ss_pred eeeeeECCCCCc
Confidence 348999976 54
No 16
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=21.59 E-value=86 Score=19.82 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=17.2
Q ss_pred cCCCcccccCCCCeeccCCCccHHHHHHHhC
Q psy7569 31 DDLPHLGYDWSGKKIMKPEQSDQLDDFLSKM 61 (71)
Q Consensus 31 dd~~HIGYDidGkkI~K~~~~d~lD~fL~~~ 61 (71)
.--.|||||-+.. ..-..-..++.+||.++
T Consensus 4 ~Hv~HVG~D~~tG-F~~~glppeWk~LL~~a 33 (107)
T 1ej5_A 4 KHVSHVGWDPQNG-FDVNNLDPDLRSLFSRA 33 (107)
T ss_dssp CCCCCCCCBTTTB-CCTTTCCHHHHHHHHHT
T ss_pred CcceecccCCCCC-cCCCCCCHHHHHHHHHc
Confidence 3457999998654 22112245666676643
No 17
>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}
Probab=21.21 E-value=31 Score=22.95 Aligned_cols=14 Identities=36% Similarity=0.930 Sum_probs=12.0
Q ss_pred cCcccccccccccCCCccc
Q psy7569 19 RNTVGNIPMNWYDDLPHLG 37 (71)
Q Consensus 19 ~NtiGnVPl~WYdd~~HIG 37 (71)
-+|.|.+| .|||||
T Consensus 40 y~t~g~lp-----~FP~IG 53 (129)
T 2kqa_A 40 YPTLGEVP-----GFPNVG 53 (129)
T ss_dssp CSBSSSSS-----CSSSEE
T ss_pred CcccccCC-----CCCeec
Confidence 47999999 699998
No 18
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=21.01 E-value=20 Score=18.32 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=7.3
Q ss_pred CCcccccCC-C
Q psy7569 33 LPHLGYDWS-G 42 (71)
Q Consensus 33 ~~HIGYDid-G 42 (71)
.-|||||.+ |
T Consensus 11 ~~Hvg~d~~tg 21 (35)
T 2ov2_I 11 RVHTGFDQHEQ 21 (35)
T ss_dssp EEEEEEETTTT
T ss_pred eeeeeeCCCCC
Confidence 348999964 5
Done!