RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7569
(71 letters)
>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme,
oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces
clavuligerus} SCOP: b.82.2.2 PDB: 1drt_A* 1ds0_A 1dry_A*
1gvg_A*
Length = 324
Score = 27.1 bits (59), Expect = 0.42
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 14 KSEDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLDDFLSKMENPNFWIQ 69
+D P+ D P LGYD P + + ++ +
Sbjct: 208 GVDDPGAIAQVKPLYGDADDPFLGYDRELLAPEDPADKEAVAALSKALDEVTEAVY 263
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase
subunit beta; winged-helix motif, transcription
activation, DNA-binding; 4.33A {Escherichia coli} PDB:
1tlh_B
Length = 99
Score = 24.7 bits (54), Expect = 2.2
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 43 KKIMKPEQSDQLDDFLSKMENPN 65
+K+ P +S+ L S P
Sbjct: 65 RKLRHPSRSEVLRSGSSGSGTPE 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 4.6
Identities = 4/28 (14%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 45 IMKPEQSDQLDDFLSKMENPNF-WIQAP 71
+ +Q + + F+ ++ N+ ++ +P
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Score = 24.0 bits (51), Expect = 4.9
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 41 SGKKIMKPEQSDQLDDFLSKMENPNFWI 68
SGK + + KM+ FW+
Sbjct: 161 SGKTWVALDVCLS-YKVQCKMDFKIFWL 187
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome,
macromolecular mimicry, translation; 1.81A {Escherichia
coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 24.2 bits (53), Expect = 5.1
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 7/29 (24%)
Query: 39 DWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
D+ KK ++L++ +++E P+ W
Sbjct: 26 DYDAKK-------ERLEEVNAELEQPDVW 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 23.9 bits (51), Expect = 5.9
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 13/47 (27%)
Query: 16 EDIRNTVGNIPMNWYDDLPHLGYDWSGKKIMKPEQSDQLD-----DF 57
D+R G+I D + L W E + Q DF
Sbjct: 466 SDLRVLSGSISERIVDCIIRLPVKW--------ETTTQFKATHILDF 504
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 23.4 bits (51), Expect = 7.6
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 39 DWSGKKIMKPEQSDQLDDFLSKMENPNFW 67
D K+ +L + ++E+P+ W
Sbjct: 18 DIPQKE-------TRLKELERRLEDPSLW 39
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 23.7 bits (52), Expect = 7.6
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 6 LMKSGQLVKSEDIRNTVG 23
++G LVK ED +
Sbjct: 325 FREAGHLVKEEDYTIALA 342
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 23.5 bits (51), Expect = 7.9
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 44 KIMKPEQSDQLDDFLSKME 62
K ++ DQ DF +++
Sbjct: 58 KQLQHSGPDQQRDFQREIQ 76
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 23.1 bits (50), Expect = 9.4
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 33 LPHLGYDWSGKKIMK------PEQ-SDQLDDFLSKMENPN 65
LP G W +I + P+ S + + L M +P+
Sbjct: 230 LPRNGDQW--HEIRQGRLPRIPQVLSQEFTELLKVMIHPD 267
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae,
orthobunyavirus, aedes triseriatu hydrolase; 2.20A
{Bunyavirus la crosse} PDB: 2xi7_A*
Length = 184
Score = 23.4 bits (50), Expect = 9.5
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 13 VKSEDIRNTVGNIPMN----WYDDLPHLGYD 39
+ S+ + I ++ + DL L Y+
Sbjct: 141 INSDRFKELYPTIVVDINFNQFFDLKQLLYE 171
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 23.0 bits (50), Expect = 9.9
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 33 LPHLGYDWS--GKKIMKPE----QSDQLDDFLSKMENPN 65
LPH G W + + PE S +L L M P+
Sbjct: 254 LPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPD 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.432
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,119,895
Number of extensions: 51221
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 16
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)