RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7569
         (71 letters)



>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
          C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 66

 Score = 23.9 bits (52), Expect = 1.0
 Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 43 KKIMKPEQSDQLDDFLSKMENPNFWIQAP 71
          K++ +       +    K+ +P F  +AP
Sbjct: 11 KRLKELLA--LAERSQRKLASPGFREKAP 37


>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 140

 Score = 22.5 bits (48), Expect = 6.1
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 35  HLGYDWS-GKKIMKPEQSDQLDDFLSKMENP 64
           H   +W+   +     +  QLD ++SK ++P
Sbjct: 105 HPKEEWADVTETNDALKMKQLDTYISKYQDP 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,974
Number of extensions: 11268
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 4
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)