BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7574
         (142 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R311|CTGE5_MOUSE Cutaneous T-cell lymphoma-associated antigen 5 homolog OS=Mus
           musculus GN=Ctage5 PE=1 SV=1
          Length = 779

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 5   ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYRE 64
           ESK+ +LQ +K E+     Q++Q++L    EL    YQE +     ++ R    +E YR 
Sbjct: 336 ESKQASLQSEKTEFESE-SQKLQQKLKVITEL----YQENEM----KLHRKLTVEENYRL 386

Query: 65  EKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHE 113
           EK+ K+ K+ + +  + +  E  RQ  K   +ELE+ + SY  Q   HE
Sbjct: 387 EKEEKLSKVDEKISHATEELETCRQRAKDLEEELERTIHSYQGQVISHE 435


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.119    0.302 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,693,092
Number of Sequences: 539616
Number of extensions: 1840643
Number of successful extensions: 43665
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 2998
Number of HSP's that attempted gapping in prelim test: 18259
Number of HSP's gapped (non-prelim): 17142
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)