Query psy7574
Match_columns 142
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 21:56:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13868 Trichoplein: Tumour s 95.5 0.87 1.9E-05 35.2 17.8 112 11-123 65-176 (350)
2 PF10669 Phage_Gp23: Protein g 62.0 51 0.0011 25.4 7.0 61 19-81 41-101 (121)
3 KOG1029|consensus 52.0 1.6E+02 0.0035 29.4 10.0 93 6-110 531-625 (1118)
4 PF09731 Mitofilin: Mitochondr 34.2 2.8E+02 0.0062 23.3 15.8 26 57-82 307-332 (582)
5 PF04799 Fzo_mitofusin: fzo-li 33.2 2.4E+02 0.0053 22.2 7.6 56 5-60 70-137 (171)
6 PF07129 DUF1381: Protein of u 24.2 32 0.00068 22.7 0.4 12 2-13 31-42 (44)
7 KOG0100|consensus 21.2 1.2E+02 0.0025 28.6 3.6 23 44-66 537-559 (663)
8 PF12923 RRP7: Ribosomal RNA-p 21.2 1.9E+02 0.0041 20.7 4.0 28 63-90 98-125 (131)
9 PF06936 Selenoprotein_S: Sele 21.0 2.6E+02 0.0057 21.9 5.1 17 19-35 85-101 (190)
10 PF00504 Chloroa_b-bind: Chlor 18.2 50 0.0011 23.3 0.5 11 111-121 29-39 (156)
No 1
>PF13868 Trichoplein: Tumour suppressor, Mitostatin
Probab=95.48 E-value=0.87 Score=35.23 Aligned_cols=112 Identities=24% Similarity=0.415 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhhHHHHHhHHhHHHHHHH
Q psy7574 11 LQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQH 90 (142)
Q Consensus 11 lqrqkveyrkaleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyreekqnkmmklrqdmeeslksreqmrqh 90 (142)
.......++.+|..||.+ ....+...+.....|...-...+-++...+..-...+..+...++++|..++..+..++..
T Consensus 65 ~~~~~~~~~~~L~~Qi~e-~~~~r~~e~e~~~~E~~~~~~~~~~~~~Ee~~~~~~k~~k~~~~~~e~~~~~~~~~~~k~~ 143 (350)
T PF13868_consen 65 RKEKRQEQRQALQEQIEE-RERRRQEEKEEKEREAEQLKEQIKQIQEEEEAEEEEKREKQKELRQELDEFNEERKERKAR 143 (350)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999944 4555556666777777776777777777888888899999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhhhhhhhHhhhhchHHH
Q psy7574 91 EKLQNQELEKKVESYWEQSSRHEVEMKHGREEK 123 (142)
Q Consensus 91 eklqnqelekkvesyweqssrhevemkhgreek 123 (142)
++....+.+.++..|...-..-+-..+.-+.++
T Consensus 144 e~~~e~eed~~i~~~~~~k~~~e~~~~~~~~~~ 176 (350)
T PF13868_consen 144 EKEREKEEDEKILEYAREKDEREEEREEEKREK 176 (350)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987776655554433333
No 2
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=61.98 E-value=51 Score=25.40 Aligned_cols=61 Identities=34% Similarity=0.399 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhhHHHHHhH
Q psy7574 19 RKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESL 81 (142)
Q Consensus 19 rkaleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyreekqnkmmklrqdmeesl 81 (142)
|+.+.-.|.||-.|+.+-.-..-.|..+-.+.-|-.|.++..- -.+||.||+-.|.--.||
T Consensus 41 ~r~~r~~MKEER~K~E~~~q~r~rES~~Er~K~~~s~~~~q~L--m~rQN~mm~~qqqsidsl 101 (121)
T PF10669_consen 41 SRQVRIRMKEERSKKEEKRQKRNRESKRERQKFIWSMNKQQSL--MNRQNNMMKQQQQSIDSL 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHhhhhHHHHH--HHHHhHHHHHHHHhHHHH
Confidence 5667778888776665433222233333344455556665443 578999999887665555
No 3
>KOG1029|consensus
Probab=52.04 E-value=1.6e+02 Score=29.40 Aligned_cols=93 Identities=26% Similarity=0.307 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhhhHHhHHHHHHHHHHhhHHHH-HhHHhH
Q psy7574 6 SKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDME-ESLKSR 84 (142)
Q Consensus 6 skeqalqrqkveyrkaleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyreekqnkmmklrqdme-eslksr 84 (142)
|--.|+-+.|-..|++|+.++ ++|.|.++-|| .+||-...|-++|++.--.+..+.++-|+ +-.+-+
T Consensus 531 s~L~aa~~~ke~irq~ikdql-delskE~esk~-----------~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~k 598 (1118)
T KOG1029|consen 531 SELEAARRKKELIRQAIKDQL-DELSKETESKL-----------NEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLK 598 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHhhHHHHHHHHHHHhhhh
Q psy7574 85 EQMRQ-HEKLQNQELEKKVESYWEQSS 110 (142)
Q Consensus 85 eqmrq-heklqnqelekkvesyweqss 110 (142)
++-+. -+...+.+++..+.|-|.+.+
T Consensus 599 e~et~~lel~~~ke~e~~~asa~~~~~ 625 (1118)
T KOG1029|consen 599 EAETKALELIGEKEAESAPASAADAGA 625 (1118)
T ss_pred HHHHHHHHHHhhhhhccchhhcccCCC
No 4
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=34.24 E-value=2.8e+02 Score=23.32 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=19.1
Q ss_pred hhhHHhHHHHHHHHHHhhHHHHHhHH
Q psy7574 57 KQDEKYREEKQNKMMKLRQDMEESLK 82 (142)
Q Consensus 57 kqdekyreekqnkmmklrqdmeeslk 82 (142)
++.+.|+.+-......|++.+++.|+
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~ 332 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELR 332 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777788887777664
No 5
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.22 E-value=2.4e+02 Score=22.25 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHH------------HHHHHHHHHhhhHhhHHHHHHHHHhhhhhhhhhhhhhhhH
Q psy7574 5 ESKEQALQRQKVEYRK------------ALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDE 60 (142)
Q Consensus 5 eskeqalqrqkveyrk------------aleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqde 60 (142)
..||+++.+|-|+|-- ...+|+|.||+.--.---.+-..-.+--..||+++++.-+
T Consensus 70 ~AKER~fK~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~ 137 (171)
T PF04799_consen 70 KAKERAFKRQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQ 137 (171)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999888742 2467888888754332223333333334556666655443
No 6
>PF07129 DUF1381: Protein of unknown function (DUF1381); InterPro: IPR009812 This entry is represented by Bacteriophage 92, Orf59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=24.25 E-value=32 Score=22.67 Aligned_cols=12 Identities=67% Similarity=0.908 Sum_probs=9.9
Q ss_pred chhhhHHHHHHH
Q psy7574 2 LEAESKEQALQR 13 (142)
Q Consensus 2 leaeskeqalqr 13 (142)
.||||||+|+..
T Consensus 31 VeAeskeeA~~k 42 (44)
T PF07129_consen 31 VEAESKEEALKK 42 (44)
T ss_pred EEecchHHHHhh
Confidence 689999999753
No 7
>KOG0100|consensus
Probab=21.22 E-value=1.2e+02 Score=28.63 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.4
Q ss_pred HhhhhhhhhhhhhhhhHHhHHHH
Q psy7574 44 EQRVTQGEIDRMTKQDEKYREEK 66 (142)
Q Consensus 44 eqrvtqgeidrmtkqdekyreek 66 (142)
.-|+|+.+|+||.+..|++.+|-
T Consensus 537 ~~rLt~EdIerMv~eAekFAeeD 559 (663)
T KOG0100|consen 537 KGRLTPEDIERMVNEAEKFAEED 559 (663)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhh
Confidence 35899999999999999999874
No 8
>PF12923 RRP7: Ribosomal RNA-processing protein 7 (RRP7); InterPro: IPR024326 Ribosomal RNA-processing protein 7 (RRP7) is an essential protein in yeast that is involved in pre-rRNA processing and ribosome assembly []. It is speculated to be required for correct assembly of rpS27 into the pre-ribosomal particle [, ]. This entry includes RRP7 and homologous sequences from other organisms.
Probab=21.20 E-value=1.9e+02 Score=20.74 Aligned_cols=28 Identities=43% Similarity=0.639 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhHHHHHhHHhHHHHHHH
Q psy7574 63 REEKQNKMMKLRQDMEESLKSREQMRQH 90 (142)
Q Consensus 63 reekqnkmmklrqdmeeslksreqmrqh 90 (142)
||.|.|.+..||.-.|+--+.-++|+.-
T Consensus 98 RE~kk~~l~eLrkkFeeDK~ki~~mk~~ 125 (131)
T PF12923_consen 98 REKKKNELAELRKKFEEDKKKIEQMKAA 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6778888888888888888777777653
No 9
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=20.98 E-value=2.6e+02 Score=21.95 Aligned_cols=17 Identities=53% Similarity=0.648 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhHhh
Q psy7574 19 RKALEQQMQEELDKKKE 35 (142)
Q Consensus 19 rkaleqqmqeeldkkke 35 (142)
..|..+.||||+|++-+
T Consensus 85 ~eaAR~RmQEE~dakA~ 101 (190)
T PF06936_consen 85 MEAARRRMQEELDAKAE 101 (190)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556778999888754
No 10
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=18.16 E-value=50 Score=23.26 Aligned_cols=11 Identities=55% Similarity=0.833 Sum_probs=8.8
Q ss_pred hhhHhhhhchH
Q psy7574 111 RHEVEMKHGRE 121 (142)
Q Consensus 111 rhevemkhgre 121 (142)
..+.|+||||-
T Consensus 29 ~R~aEl~hGR~ 39 (156)
T PF00504_consen 29 YREAELKHGRV 39 (156)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHhhhh
Confidence 35789999995
Done!