Query psy7574
Match_columns 142
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 21:56:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_A Leucine-rich immune mol 47.9 90 0.0031 23.8 13.2 49 55-107 415-463 (487)
2 3vem_A Helicase protein MOM1; 33.9 1.3E+02 0.0046 21.7 9.8 57 65-123 36-93 (115)
3 1qp6_A Protein (alpha2D); de n 30.7 32 0.0011 20.9 2.2 24 96-119 4-27 (35)
4 2q2f_A Selenoprotein S; anti-p 22.7 95 0.0032 21.9 3.7 17 20-36 50-66 (89)
5 3swk_A Vimentin; cytoskeleton, 21.1 1.8E+02 0.0061 18.9 6.6 34 73-106 43-76 (86)
6 3dob_A Heat shock 70 kDa prote 14.7 72 0.0025 22.0 1.6 21 46-66 118-138 (152)
7 1ezj_A Nucleocapsid phosphopro 14.5 2.6E+02 0.009 20.4 4.7 32 14-45 66-99 (115)
8 2bhw_A Chlorophyll A-B binding 14.0 46 0.0016 25.3 0.5 10 112-121 62-71 (232)
9 2ygk_A NURA; hydrolase, DNA re 13.4 1.5E+02 0.0053 23.1 3.3 18 93-110 26-43 (339)
10 3bhp_A UPF0291 protein YNZC; N 13.0 2.4E+02 0.0081 18.2 3.6 28 3-32 24-51 (60)
No 1
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.88 E-value=90 Score=23.76 Aligned_cols=49 Identities=18% Similarity=0.077 Sum_probs=25.1
Q ss_pred hhhhhHHhHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHhhHHHHHHHHHHHh
Q psy7574 55 MTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWE 107 (142)
Q Consensus 55 mtkqdekyreekqnkmmklrqdmeeslksreqmrqheklqnqelekkvesywe 107 (142)
.-++-+.-..+.++.+.+.++||+..-..-+++ +-.|..+++.++.+=.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 415 IVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL----AEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHH----HHHhhhhhhhhhhhhh
Confidence 333333344445556666667766653332333 3356666666665533
No 2
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=33.87 E-value=1.3e+02 Score=21.70 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=40.9
Q ss_pred HHHHHHHHhhHHHHHhHHhHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhHhhhhchHHH
Q psy7574 65 EKQNKMMKLRQDMEESLKSREQMRQHEKLQ-NQELEKKVESYWEQSSRHEVEMKHGREEK 123 (142)
Q Consensus 65 ekqnkmmklrqdmeeslksreqmrqheklq-nqelekkvesyweqssrhevemkhgreek 123 (142)
--+|.|-+||-.++...|.-|+.+++-+.. ++|+++.-..|=.. -|++|+-+-+..|
T Consensus 36 PL~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~--lqe~ese~~~kkK 93 (115)
T 3vem_A 36 PFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRK--FHEVEAEHNTRTT 93 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 357889999999999999999999888764 45555544555433 4677776665544
No 3
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=30.72 E-value=32 Score=20.88 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhhhhc
Q psy7574 96 QELEKKVESYWEQSSRHEVEMKHG 119 (142)
Q Consensus 96 qelekkvesyweqssrhevemkhg 119 (142)
.|||||....|....|-|+|--|.
T Consensus 4 eelekkfkelwkgprrgeieelhk 27 (35)
T 1qp6_A 4 EELEKKFKELWKGPRRGEIEELHK 27 (35)
T ss_dssp HHHHHHHHHHHSSSCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccchHHHHHH
Confidence 589999999999999999886653
No 4
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=22.72 E-value=95 Score=21.88 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhHhhH
Q psy7574 20 KALEQQMQEELDKKKEL 36 (142)
Q Consensus 20 kaleqqmqeeldkkkel 36 (142)
.|-...|||+||.+.++
T Consensus 50 ~aaRlRMQEeldAqAe~ 66 (89)
T 2q2f_A 50 AAARLKMQEELNAQVEK 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456899999987764
No 5
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.05 E-value=1.8e+02 Score=18.87 Aligned_cols=34 Identities=35% Similarity=0.421 Sum_probs=17.2
Q ss_pred hhHHHHHhHHhHHHHHHHHHHhhHHHHHHHHHHH
Q psy7574 73 LRQDMEESLKSREQMRQHEKLQNQELEKKVESYW 106 (142)
Q Consensus 73 lrqdmeeslksreqmrqheklqnqelekkvesyw 106 (142)
+|+++|..+..--..-.---|..-+||.+|+|-=
T Consensus 43 ~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 43 QREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444433322222233455567888888753
No 6
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=14.72 E-value=72 Score=22.04 Aligned_cols=21 Identities=38% Similarity=0.762 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhhhHHhHHHH
Q psy7574 46 RVTQGEIDRMTKQDEKYREEK 66 (142)
Q Consensus 46 rvtqgeidrmtkqdekyreek 66 (142)
+++..||++|.+..++|.++-
T Consensus 118 ~Ls~~ei~~~~~~a~~~~~~D 138 (152)
T 3dob_A 118 RLTQSDIDRMVHEAKQFEKED 138 (152)
T ss_dssp --CHHHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhh
Confidence 578889999999988888764
No 7
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=14.52 E-value=2.6e+02 Score=20.37 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhHHH--HHHHHHh
Q psy7574 14 QKVEYRKALEQQMQEELDKKKELKY--RQYQEEQ 45 (142)
Q Consensus 14 qkveyrkaleqqmqeeldkkkelky--rqyqeeq 45 (142)
.||+-.+.+-.|+|+|+..-+++-- -.||.||
T Consensus 66 ~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ 99 (115)
T 1ezj_A 66 RKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4677777788899999988887632 2455554
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=14.00 E-value=46 Score=25.31 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=8.6
Q ss_pred hhHhhhhchH
Q psy7574 112 HEVEMKHGRE 121 (142)
Q Consensus 112 hevemkhgre 121 (142)
.|+|+||||-
T Consensus 62 ReaELkHGR~ 71 (232)
T 2bhw_A 62 RELEVIHSRW 71 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhccch
Confidence 5889999994
No 9
>2ygk_A NURA; hydrolase, DNA repair, replication; HET: MSE; 2.50A {Sulfolobus solfataricus}
Probab=13.38 E-value=1.5e+02 Score=23.06 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=13.7
Q ss_pred HhhHHHHHHHHHHHhhhh
Q psy7574 93 LQNQELEKKVESYWEQSS 110 (142)
Q Consensus 93 lqnqelekkvesyweqss 110 (142)
--++++++.|.++|..-+
T Consensus 26 ~~~~~~~~~v~~~W~~~~ 43 (339)
T 2ygk_A 26 YLKQEIQDKVNEYWNEYV 43 (339)
T ss_dssp HHHHHHHHHHHHHEEECC
T ss_pred HHHHHHHHHHhhhceECC
Confidence 346677889999997654
No 10
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=13.01 E-value=2.4e+02 Score=18.19 Aligned_cols=28 Identities=39% Similarity=0.520 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7574 3 EAESKEQALQRQKVEYRKALEQQMQEELDK 32 (142)
Q Consensus 3 eaeskeqalqrqkveyrkaleqqmqeeldk 32 (142)
++|.+||+.-|+ +|-+++..++...|+.
T Consensus 24 ~eEk~EQ~~LR~--eYl~~fR~~~r~~L~~ 51 (60)
T 3bhp_A 24 EEEKAEQQKLRQ--EYLKGFRSSMKNTLKS 51 (60)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 456667766554 6777777777766653
Done!