Query psy7574
Match_columns 142
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 21:56:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7574.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7574hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 23.9 9.4 0.00069 26.2 0.5 11 112-122 49-59 (218)
2 d1dkza1 a.8.4.1 (A:507-603) Dn 17.5 96 0.007 18.1 6.9 36 47-82 1-38 (97)
3 d1u1ha1 c.1.22.2 (A:2-395) 5-m 14.7 69 0.005 23.4 3.6 31 95-125 13-43 (394)
4 d1zeea1 a.266.1.2 (A:6-392) Hy 13.1 61 0.0045 25.6 3.0 45 94-142 17-61 (387)
5 d1bf5a1 a.47.1.1 (A:136-316) S 6.4 3.6E+02 0.027 17.9 5.7 20 19-43 25-44 (181)
6 d1u00a1 a.8.4.1 (A:504-615) Ch 6.4 2.7E+02 0.02 16.4 6.9 35 48-82 2-38 (112)
7 d2f7sa1 c.37.1.8 (A:5-190) Rab 5.9 73 0.0054 18.8 0.5 31 105-135 155-185 (186)
8 d1lrza1 a.2.7.4 (A:245-309) Me 4.7 3.4E+02 0.025 15.6 4.0 31 66-96 15-45 (65)
9 d1to9a_ a.132.1.3 (A:) Transcr 4.6 1.8E+02 0.013 18.0 1.9 27 96-122 4-32 (225)
10 d1ilea3 c.26.1.1 (A:1-197,A:38 4.5 1.8E+02 0.013 19.3 2.0 16 96-111 11-26 (452)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=23.86 E-value=9.4 Score=26.23 Aligned_cols=11 Identities=36% Similarity=0.411 Sum_probs=8.9
Q ss_pred hhHhhhhchHH
Q psy7574 112 HEVEMKHGREE 122 (142)
Q Consensus 112 hevemkhgree 122 (142)
.|.|+||||--
T Consensus 49 ReaELKHGR~A 59 (218)
T d1rwta_ 49 RELEVIHCRWA 59 (218)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhceeh
Confidence 48999999953
No 2
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Probab=17.54 E-value=96 Score=18.11 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=24.2
Q ss_pred hhhhhhhhhhhhhHHhHHHHHH--HHHHhhHHHHHhHH
Q psy7574 47 VTQGEIDRMTKQDEKYREEKQN--KMMKLRQDMEESLK 82 (142)
Q Consensus 47 vtqgeidrmtkqdekyreekqn--kmmklrqdmeeslk 82 (142)
+|..||+||-+--++|.++-.. .+...|...+.-+-
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~ 38 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLH 38 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999876433 34445555554443
No 3
>d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.66 E-value=69 Score=23.37 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHhhhhhhhHhhhhchHHHHH
Q psy7574 95 NQELEKKVESYWEQSSRHEVEMKHGREEKQK 125 (142)
Q Consensus 95 nqelekkvesyweqssrhevemkhgreekqk 125 (142)
|.||.+.+|+||......+-=.+-+++....
T Consensus 13 ~RELK~A~E~yw~G~is~~eL~~~~~~~~~~ 43 (394)
T d1u1ha1 13 KRELKFALESFWDGKSTAEDLQKVSADLRSS 43 (394)
T ss_dssp TCHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 5589999999998654433333333333333
No 4
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=13.10 E-value=61 Score=25.63 Aligned_cols=45 Identities=33% Similarity=0.440 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhHhhhhchHHHHHHHHHHHHHHHHHhhhhC
Q psy7574 94 QNQELEKKVESYWEQSSRHEVEMKHGREEKQKLITQRQEQCAQSLQEIN 142 (142)
Q Consensus 94 qnqelekkvesyweqssrhevemkhgreekqklitqrqeqcaqslqein 142 (142)
-|.+|| +-||.|+.|..|+- -|...|+.|..+-.+-...-|.|=|
T Consensus 17 ~n~~le---~~y~~~~~~~~~~~-~g~~~k~~l~~~g~~~i~~ll~egn 61 (387)
T d1zeea1 17 LNSQLE---QLYYQQTDRANVQE-VGTELKHTLESEGRELVKALLDEGN 61 (387)
T ss_dssp HHHHHH---HHHHHSSSSSCCSS-SCHHHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHH---HHHHcCCCcccccc-chHHHHHHHHHHHHHHHHHHHhcCC
Confidence 366676 46999999999975 5788899888887776666666543
No 5
>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.41 E-value=3.6e+02 Score=17.86 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhHhhHHHHHHHH
Q psy7574 19 RKALEQQMQEELDKKKELKYRQYQE 43 (142)
Q Consensus 19 rkaleqqmqeeldkkkelkyrqyqe 43 (142)
.|.|| ++|++.| ++|..+|.
T Consensus 25 ik~Le-d~Qd~fd----f~yktlq~ 44 (181)
T d1bf5a1 25 IKSLE-DLQDEYD----FKCKTLQN 44 (181)
T ss_dssp HHHHH-HHHHHHH----HHHHHHHH
T ss_pred HHHHH-HHHHHHH----HHHHHHHh
Confidence 34455 6777776 35666653
No 6
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=6.40 E-value=2.7e+02 Score=16.36 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=22.7
Q ss_pred hhhhhhhhhhhhHHhHHHHHH--HHHHhhHHHHHhHH
Q psy7574 48 TQGEIDRMTKQDEKYREEKQN--KMMKLRQDMEESLK 82 (142)
Q Consensus 48 tqgeidrmtkqdekyreekqn--kmmklrqdmeeslk 82 (142)
+.-||+||-+--++|.++-.. .+...|.+.+..+-
T Consensus 2 S~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~ 38 (112)
T d1u00a1 2 TDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLE 38 (112)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999998888876433 23444555544443
No 7
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.90 E-value=73 Score=18.79 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=18.8
Q ss_pred HHhhhhhhhHhhhhchHHHHHHHHHHHHHHH
Q psy7574 105 YWEQSSRHEVEMKHGREEKQKLITQRQEQCA 135 (142)
Q Consensus 105 yweqssrhevemkhgreekqklitqrqeqca 135 (142)
|++-|+..-.-++..-+.--.+|.+|++||-
T Consensus 155 ~~e~Sak~~~~i~e~f~~l~~~i~~k~~~~~ 185 (186)
T d2f7sa1 155 YFETSAATGQNVEKAVETLLDLIMKRMEQCV 185 (186)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 5555555443344444455567788999984
No 8
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=4.71 E-value=3.4e+02 Score=15.60 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=22.5
Q ss_pred HHHHHHHhhHHHHHhHHhHHHHHHHHHHhhH
Q psy7574 66 KQNKMMKLRQDMEESLKSREQMRQHEKLQNQ 96 (142)
Q Consensus 66 kqnkmmklrqdmeeslksreqmrqheklqnq 96 (142)
-.++|.++..|+++.-.|.-.-+++.-|..|
T Consensus 15 L~~~i~k~~~~leknP~skK~~nk~~el~~Q 45 (65)
T d1lrza1 15 LNKDLNKALKDIEKRPENKKAHNKRDNLQQQ 45 (65)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 3467889999999988887776666555433
No 9
>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}
Probab=4.55 E-value=1.8e+02 Score=17.96 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhhhhH--hhhhchHH
Q psy7574 96 QELEKKVESYWEQSSRHEV--EMKHGREE 122 (142)
Q Consensus 96 qelekkvesyweqssrhev--emkhgree 122 (142)
++|-+.+.++|+..-.|.. .|..|.-.
T Consensus 4 ~~L~~~~~~~w~~~~~HPFv~~l~~GtL~ 32 (225)
T d1to9a_ 4 EECRSAAAEWWEGSFVHPFVQGIGDGTLP 32 (225)
T ss_dssp HHHHHHTHHHHHHHHTCHHHHHHHTTCSC
T ss_pred HHHHHHhHHHHHHHHCCHHHHHHhcCCCC
Confidence 5788899999999999974 56667633
No 10
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=4.47 E-value=1.8e+02 Score=19.32 Aligned_cols=16 Identities=25% Similarity=0.680 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhh
Q psy7574 96 QELEKKVESYWEQSSR 111 (142)
Q Consensus 96 qelekkvesyweqssr 111 (142)
.++|+++-+||+.+.-
T Consensus 11 ~~~e~~~~~~w~~~~~ 26 (452)
T d1ilea3 11 PKLEEEVLAFWKREKI 26 (452)
T ss_dssp HHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHCCC
Confidence 4789999999996543
Done!