RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7574
(142 letters)
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 32.1 bits (74), Expect = 0.074
Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQE-EQRVTQGE--IDRMTKQD 59
EA+ + +A++++ + K +++ E +K+ + + Q+ E+R+ Q E +DR +
Sbjct: 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELL 105
Query: 60 EKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 100
EK EE + K +L Q +E K E++ + + Q QELE+
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 27.8 bits (63), Expect = 2.0
Identities = 17/83 (20%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 51 EIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSS 110
EI ++ + EK E++N++ Q +E+ L +E+ + ++ E+++E ++
Sbjct: 65 EIHKLRNEFEKELRERRNEL----QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELE 120
Query: 111 RHEVEMKHGREEKQKLITQRQEQ 133
+ + E++ EE ++LI ++ ++
Sbjct: 121 QKQQELEKKEEELEELIEEQLQE 143
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 32.1 bits (73), Expect = 0.076
Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 2 LEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEK 61
+ E E+ L+ Q+ K LEQ+M+E ++++ K +E Q + + +
Sbjct: 529 QKNEHLEKLLKEQEKLK-KELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRE 587
Query: 62 YREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKK 101
+E+K +K + +KS E + + ++ + + +K
Sbjct: 588 LKEKKIHK--------AKEIKSIEDLVKLKETKQKIPQKP 619
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 32.0 bits (73), Expect = 0.084
Identities = 22/160 (13%), Positives = 53/160 (33%), Gaps = 23/160 (14%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQR----VTQGEIDRMT 56
L + Q L + + E A Q++ L +E + QEE + + + +
Sbjct: 2 ALAGNNVLQELLQSRRELLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQ 61
Query: 57 KQDEKYRE-----EKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSR 111
++ + +Q + +L + + + Q + E+ + S
Sbjct: 62 QELAINDQLSQALNQQTE--RLNALASDDRQLANLLLQLLQSSRTIREQIA---VLRGSL 116
Query: 112 HEVEM---------KHGREEKQKLITQRQEQCAQSLQEIN 142
+ + G+ ++Q +TQ ++ IN
Sbjct: 117 LLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAEKAYIN 156
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 32.1 bits (73), Expect = 0.092
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 43 EEQRVTQGEIDRMTKQDEKYREE--KQNKMMKLRQDMEESLKSREQMRQHEKLQNQ---- 96
++ R+++ +IDRM + EKY+ E + ++ + +E S + Q EK++ +
Sbjct: 508 DKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDS 567
Query: 97 ---ELEKKVESYWEQSSRHEVEMKHGREEKQK 125
+EK ++ E ++++ K E KQK
Sbjct: 568 DKATIEKAIDEALEWLEKNQLAEKEEFEHKQK 599
>gnl|CDD|206172 pfam14002, YniB, YniB-like protein. The YniB-like protein family
includes the E. coli YniB protein, which is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are approximately 180
amino acids in length. This family of proteins are
integral membrane proteins.
Length = 166
Score = 29.2 bits (66), Expect = 0.49
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 11 LQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVT 48
+ RQ R+ +E Q+ E K E + R+ Q E+++
Sbjct: 97 MSRQVKFIREGIEDQLILEKAKGVEGRTRE-QLEEKIV 133
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 29.4 bits (67), Expect = 0.69
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 83 SREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHG 119
+RE++++ E+L N+ + + E R+E E K+G
Sbjct: 634 TREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYG 670
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 0.79
Identities = 21/99 (21%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
EAE+ + ++ K E + E+ QEE DK E ++ Q+ + + E D + K+ +
Sbjct: 538 EAEALLKEAEKLKEELEEKKEKL-QEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQL 596
Query: 63 REEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKK 101
++ + ++ E+ K + +EK + ++ ++K
Sbjct: 597 QKGGYASVK--AHELIEARKRLNK--ANEKKEKKKKKQK 631
Score = 28.3 bits (64), Expect = 1.4
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 5 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYRE 64
E +++ L+ + E ++A+++ +E + KEL+ Q V E+ K+ K E
Sbjct: 562 EEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANE 621
Query: 65 EKQNKMMKLRQDMEE 79
+K+ K K ++ EE
Sbjct: 622 KKEKKKKKQKEKQEE 636
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 29.3 bits (65), Expect = 0.82
Identities = 17/89 (19%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 12 QRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMM 71
+R ++E A + ++ ++ +KK ++ + +E +R+ + ++R+ + E+ E+ +
Sbjct: 436 ERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIER--ERLERERLERER 493
Query: 72 KLRQDMEESLKSREQMRQHEKLQNQELEK 100
R +E R + + ++L+ LEK
Sbjct: 494 LERDRLERDRLDRLERERVDRLERDRLEK 522
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.8 bits (65), Expect = 0.96
Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 34 KELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSRE-QMRQHEK 92
KE+ + EE+R + + ++ EK EE + +++ R+++ L+ + ++ EK
Sbjct: 304 KEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEK 363
Query: 93 LQNQELEKKV 102
+ K
Sbjct: 364 RLEKLKSNKS 373
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.7 bits (65), Expect = 1.0
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 38 YRQYQEEQRVTQGEIDRMTKQDEKYRE----------EKQNKMMKLRQDMEESLKSREQ- 86
R+ E+++ E +E +E E + ++ KLR ++E LK R
Sbjct: 18 LRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE 77
Query: 87 -MRQHEKLQNQE--LEKKVESYWEQSSRHEVEMKHGREEKQKLITQRQEQCAQSLQE 140
R +L +E L++K+ES ++ E + K K+K + +++E+ + + E
Sbjct: 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKE-LSNKEKNLDEKEEELEELIAE 133
Score = 27.6 bits (62), Expect = 2.2
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 3 EAES-KEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGE--IDRMTKQD 59
EAE+ K++AL K E K + +E +++ EL+ + E+R+ Q E +DR +
Sbjct: 44 EAETLKKEALLEAKEEVHKLRAELERELKERRNELQ----RLERRLLQREETLDRKMESL 99
Query: 60 EKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 100
+K E + K +L + + E++ + Q +ELE+
Sbjct: 100 DKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER 140
>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase
component YidC; Provisional.
Length = 357
Score = 28.4 bits (64), Expect = 1.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 42 QEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDME 78
QEE + + +ID KY++ K++K MK R+ E
Sbjct: 162 QEELQGKKAKID------AKYKDYKKDKQMKQRKQQE 192
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 28.8 bits (64), Expect = 1.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 23 EQQMQEEL-DKKKELKYRQYQEEQRVTQGEIDRMTKQ--DEKYREEKQNKMMKLRQDMEE 79
EQ M L + + R ++ +++ +I+ + ++ E+ EE + K+ KLR E
Sbjct: 387 EQNMNAALLSDELGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEM 446
Query: 80 SLKSREQMRQHEKL 93
SL HE L
Sbjct: 447 SLSIDGGGVAHESL 460
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 28.6 bits (63), Expect = 1.4
Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
EA+ K + L++ + E +K + + +E +KKK + ++ +EE ++ E + ++D+K
Sbjct: 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Query: 63 REEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREE 122
EE + ++ E K E+ ++ E+L+ +E E+K ++ E+ + E E K EE
Sbjct: 1677 AEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA--EELKKAEEENKIKAEE 1734
Query: 123 KQK 125
+K
Sbjct: 1735 AKK 1737
Score = 26.6 bits (58), Expect = 5.4
Identities = 27/139 (19%), Positives = 64/139 (46%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
E K + +++ E +KA E + + KKE + + EE + + E + ++ +K
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724
Query: 63 REEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREE 122
EE + K + +++ EE K E+ ++ E+ + + K E + + + EE
Sbjct: 1725 EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
Query: 123 KQKLITQRQEQCAQSLQEI 141
+ +R+ + + +++I
Sbjct: 1785 LDEEDEKRRMEVDKKIKDI 1803
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 28.7 bits (65), Expect = 1.4
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 32 KKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHE 91
K +Y ++ EID ++ EK+ +K+ + KL ++ E++K E ++ +
Sbjct: 145 PKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQ 204
Query: 92 KLQNQELEKKV 102
E V
Sbjct: 205 SKNFDPKEGPV 215
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 28.3 bits (63), Expect = 1.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 49 QGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKV 102
+ E++RM ++ EK+ +E + K R ++ ++ + Q EK Q +EL KV
Sbjct: 541 KDEVERMVQEAEKFAKEDKEK----RDAVDTKNQADSVVYQTEK-QLKELGDKV 589
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta;
Validated.
Length = 327
Score = 28.1 bits (63), Expect = 1.7
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 15 KVEYRKALEQQMQEELDKKKEL-----KYRQYQEEQRVTQGEIDR 54
++ R+AL MQEE+++ ++ + +YQ +VTQG +++
Sbjct: 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQ 47
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 28.1 bits (63), Expect = 1.8
Identities = 21/99 (21%), Positives = 50/99 (50%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
+ + +E+ +++ E + E + E+ KK E + +EE + E++ + ++ EK
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455
Query: 63 REEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKK 101
E + ++R + + + R + R+ E+L+ + EKK
Sbjct: 456 ESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 28.1 bits (63), Expect = 1.8
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
EAE + + L + E + LE+ E + ++E+ + Q+E EI R+ +Q +
Sbjct: 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEI--EELQKELYALANEISRLEQQKQIL 307
Query: 63 REEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREE 122
RE N +L + +E L+ E + ELE+K+E E+ E E++ E
Sbjct: 308 RERLANLERQLEE-LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
Query: 123 KQKLITQRQEQCAQSLQE 140
++L ++ +E Q
Sbjct: 367 LEELESRLEELEEQLETL 384
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 27.9 bits (62), Expect = 2.1
Identities = 22/107 (20%), Positives = 47/107 (43%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
+ E+ L+R+K + KA E+++++ +KE K + ++ + K+ K
Sbjct: 10 KKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKR 69
Query: 63 REEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQS 109
E +N + D K R + ++ +EK ++WE+S
Sbjct: 70 DVEDENPEDFIDPDTPFGQKKRLSSQMAKQYSPSAVEKSWYAWWEKS 116
Score = 27.2 bits (60), Expect = 3.8
Identities = 10/44 (22%), Positives = 30/44 (68%)
Query: 43 EEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQ 86
E++ +T+ E++R K++EK +E++ K+ +++ + L++++
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQA 52
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 27.7 bits (62), Expect = 2.2
Identities = 16/103 (15%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDE 60
+ A+ + L ++ E + E++++ L +K+E + +EE + R+ ++
Sbjct: 165 IASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEE------LLARLESKEA 218
Query: 61 KYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVE 103
++ + + + ++++ + E++RQ + Q + E+K++
Sbjct: 219 ALEKQLRLEFEREKEELRKKY--EEKLRQELERQAEAHEQKLK 259
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 27.5 bits (61), Expect = 2.3
Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 11 LQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKM 70
+ R + R+ L Q+++EE +K+KE E+ + +R + +E +N +
Sbjct: 147 VTRSDYDVRE-LRQKIREEREKEKE-------EQPMKPAFKPERWMGGPDS--DEDENPL 196
Query: 71 MKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREEKQKLITQR 130
+ DM ++Q + + L + VE +++ +E ++ +
Sbjct: 197 DEEAPDMTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDS 256
Query: 131 QE 132
+
Sbjct: 257 DD 258
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 27.3 bits (61), Expect = 2.8
Identities = 15/89 (16%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 20 KALEQQMQEELDKKKELKY------RQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKL 73
K E+ M++ +K K LKY + + ++ + ++ + E+ E+ ++ +
Sbjct: 273 KTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLK-RKLKSKFERDNEKLDAEVKEK 331
Query: 74 RQDMEESLKSREQM-RQHEKLQNQELEKK 101
+++ ++ K ++Q+ R E+++ E++
Sbjct: 332 KKEKKKEEKKKKQIERLEERIEKLEVQAT 360
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 27.4 bits (61), Expect = 3.2
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 48 TQGEIDRMTKQDEKYREE--KQNKMMKLRQDMEESLKSREQ-MRQHEKLQNQELEKKVES 104
+ EI+RM ++ EKY EE ++ ++++L+ + L S E ++++ +L ++EL+++ E
Sbjct: 503 SSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQ 562
Query: 105 YWEQ 108
EQ
Sbjct: 563 KVEQ 566
>gnl|CDD|237199 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 27.3 bits (61), Expect = 3.2
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 39 RQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQM 87
QY ++ R+T+ E+ KQDE + K K++Q E + + M
Sbjct: 470 YQYNKDLRMTKQEVKEEYKQDEGDPQIKA----KIKQKQRE-MAMQRMM 513
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 26.9 bits (60), Expect = 4.7
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 11 LQRQKVEY-RKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNK 69
L+R++ R A Q+ + EL+++ E + Q EI RE+ +
Sbjct: 316 LRRRRRARLRLAELQEARAELERRVEERTADLTRANARLQAEIAE--------REQAEAA 367
Query: 70 MMKLRQDM 77
+ + + ++
Sbjct: 368 LRRAQDEL 375
>gnl|CDD|236365 PRK09041, motB, flagellar motor protein MotB; Validated.
Length = 317
Score = 26.4 bits (59), Expect = 5.0
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 48 TQGEIDRMTKQDEKYREEK----QNKMMKLRQDMEESLKSREQMRQ 89
GE+++ E + EK Q ++ KL+Q+++++++S ++RQ
Sbjct: 93 QDGEVNKQPNIAELAQGEKERREQERLEKLKQELDQAIESNPKLRQ 138
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 26.6 bits (59), Expect = 5.4
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 52 IDRMTKQDEK-YREEKQNKMMKLRQDMEESLKSREQMRQ 89
+D T ++ K YRE+K N + R +EESLK E MR+
Sbjct: 358 VDHQTPEEIKEYREKKMNSPWRDRP-IEESLKLFEDMRR 395
>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein.
Length = 193
Score = 26.4 bits (59), Expect = 5.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 36 LKYRQY--QEEQRVTQGEIDRMTKQDEKYREEK---QNKMMKLRQD 76
L +QY + + Q EI + EKY+++ Q +MMKL ++
Sbjct: 21 LTLKQYKSMAKMQELQPEIKEIQ---EKYKDDPQKLQQEMMKLYKE 63
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 26.4 bits (59), Expect = 5.8
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 51 EIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSS 110
EI+RM K E+Y E K R++ E+ E+ LEK ++ ++
Sbjct: 505 EIERMVKDAEEYAAED-----KKRKERIEAKNEAEEYV-------YSLEKSLKEEGDKLP 552
Query: 111 RHEVEM---------KHGREEKQKLITQRQEQCAQSLQEI 141
+ + + E ++ I + E+ + +Q I
Sbjct: 553 EADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPI 592
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 26.3 bits (58), Expect = 6.2
Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 11 LQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKM 70
Q+Q+ ++A EQ+ ++E + +EL+ +Q E++R+ Q E +R+ Q++K + E+ K
Sbjct: 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ 126
Query: 71 MKLRQDMEESLKSR-----------EQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHG 119
L+Q E ++ E R + E K ++ E + + E K
Sbjct: 127 AALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK 186
Query: 120 REEKQK 125
E +
Sbjct: 187 AEAEAA 192
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 26.3 bits (58), Expect = 6.3
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 20 KALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEE 79
KAL Q+MQ EL +K + +EE+ + G + + + + +NK R +
Sbjct: 8 KALAQKMQAELAEKVA----KLKEEKGIVPGLVVILVGDNPASQVYVRNKE---RSALAA 60
Query: 80 SLKSREQMRQHEKLQNQELEKKVESYWEQSSRH 112
KS E +R E + +EL +E Y + + H
Sbjct: 61 GFKS-EVVRLPETISQEELLDLIERYNQDPTWH 92
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 26.5 bits (58), Expect = 7.1
Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 13 RQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEI---DRMTKQDEKYREEKQNK 69
Q++ L ++ Q+ D+ +L Q ++ R GE D M +QD + +
Sbjct: 622 EQQMNKLGELMRKQQQLRDETFKLDQDQRRDRMRGQDGEQNFGDDMPQQDGQPNGQPNLH 681
Query: 70 MMKLRQDMEESLKSREQMRQHEKLQNQELEKKVE 103
+ EE+ + Q + K + +L + ++
Sbjct: 682 DRLRKLQQEEAKRGLGQSQGGLKGELGQLGQGLQ 715
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 26.2 bits (57), Expect = 7.6
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 24 QQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTK----------QDEKYREEKQNKMMKL 73
Q+ EE K +E + QY + EID M + Q ++Y E+ Q+ +
Sbjct: 630 QRAAEE--KAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVN 687
Query: 74 RQDMEESLKSREQMRQHEKLQNQ 96
+D + + ++ E RQ + Q Q
Sbjct: 688 AEDADAAAEA-ELARQFAQTQQQ 709
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 26.2 bits (58), Expect = 7.6
Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 4 AESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYR 63
+S+ + Q ++ K E Q+ ++ +KK + + ++ +R T I+R T++ +
Sbjct: 57 VDSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSG 116
Query: 64 EEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKV-ESYWEQSSRHEVEMKHGREE 122
EE M R + + E + L QE++ + + R +E++ +
Sbjct: 117 EEIAEMM---RDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLINELLRAGLELEILDMK 173
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 26.1 bits (58), Expect = 8.8
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 13 RQKVE--YRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNK 69
R++ E KA E++ QEE +KKE K ++ +E ++ +++ ++++ EEK+ K
Sbjct: 265 REEEEEKILKAAEEERQEEAQEKKEEKKKEEREA------KLAKLSPEEQRKLEEKERK 317
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.305 0.119 0.302
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,778,233
Number of extensions: 614878
Number of successful extensions: 2567
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1863
Number of HSP's successfully gapped: 821
Length of query: 142
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 55
Effective length of database: 7,078,804
Effective search space: 389334220
Effective search space used: 389334220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 54 (24.5 bits)