RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7574
(142 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 41.2 bits (97), Expect = 4e-05
Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 17/146 (11%)
Query: 3 EAESKEQALQRQKVEY---RKALEQQMQEELDK---------KKELKYRQYQEEQRVTQG 50
+ + K ++ LE E +K E + + Q
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE 991
Query: 51 EIDRMTKQDEKYREEK---QNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWE 107
EI ++ K+ + + EK + K + + E+ + ++ K + +EL +++ +
Sbjct: 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD--Q 1049
Query: 108 QSSRHEVEMKHGREEKQKLITQRQEQ 133
E K EE ++L ++
Sbjct: 1050 AKEITETMEKKLVEETKQLELDLNDE 1075
Score = 37.4 bits (87), Expect = 8e-04
Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 7/142 (4%)
Query: 5 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQR---VTQGEIDRMTKQDE- 60
L R K + + + + + L Y + Q RM + E
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 61 ---KYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMK 117
K + KL +E + ++ + + + L +K+ + S +++
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 118 HGREEKQKLITQRQEQCAQSLQ 139
E + + + + L
Sbjct: 967 SDVERLRMSEEEAKNATNRVLS 988
Score = 37.0 bits (86), Expect = 0.001
Identities = 16/145 (11%), Positives = 51/145 (35%), Gaps = 6/145 (4%)
Query: 3 EAESKEQALQRQKVEYR---KALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQD 59
+ ++ + L++++ E+ + K L + + E +++
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL-EKMNNLEITYSTETEKLRSDV 969
Query: 60 EKYR--EEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMK 117
E+ R EE+ ++E + + + + + +E+ + Y ++ + E+K
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 118 HGREEKQKLITQRQEQCAQSLQEIN 142
+ + + +EI
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEIT 1054
Score = 35.5 bits (82), Expect = 0.004
Identities = 10/130 (7%), Positives = 38/130 (29%), Gaps = 6/130 (4%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
Q R + R + ++ + + + + E + + E + +
Sbjct: 865 HKSIIIQKHVRGWLA-RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERY---- 919
Query: 63 REEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREE 122
++ + ++ + + + + + LE + E+ ++ EE
Sbjct: 920 -KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Query: 123 KQKLITQRQE 132
+ +
Sbjct: 979 AKNATNRVLS 988
Score = 34.3 bits (79), Expect = 0.008
Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 18/158 (11%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKK-------ELKYRQYQEEQRVTQ---- 49
L + L+ + EL K K K E ++ Q
Sbjct: 877 WLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 50 -----GEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVES 104
E + ++ + KLR D+E S E+ + + L++++
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN-RVLSLQEEIAK 995
Query: 105 YWEQSSRHEVEMKHGREEKQKLITQRQEQCAQSLQEIN 142
++ + + E K E K EQ L+E N
Sbjct: 996 LRKELHQTQTEKKTIEEWADKY-KHETEQLVSELKEQN 1032
Score = 27.4 bits (61), Expect = 1.8
Identities = 12/114 (10%), Positives = 38/114 (33%)
Query: 27 QEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQ 86
+ + Q + + + M ++ + +K + R +LK+
Sbjct: 833 KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892
Query: 87 MRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREEKQKLITQRQEQCAQSLQE 140
++ + + E K +S ++ G E K + ++ ++ + +
Sbjct: 893 LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Score = 25.8 bits (57), Expect = 6.5
Identities = 8/58 (13%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDE 60
E + + L+ +K E L +++ ++ + E ++ EE + + +++ + +
Sbjct: 1027 ELKEQNTLLKTEKEE----LNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 39.6 bits (93), Expect = 1e-04
Identities = 8/125 (6%), Positives = 30/125 (24%), Gaps = 1/125 (0%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
+ Q R + + + Q + + + + +
Sbjct: 883 KIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQS 942
Query: 63 REEKQNKMMKLRQDMEESLKS-REQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGRE 121
+ + + +L + + E+ Q ++ E+Y ++ +
Sbjct: 943 NSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 1002
Query: 122 EKQKL 126
Sbjct: 1003 LHHHH 1007
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.4 bits (92), Expect = 1e-04
Identities = 24/134 (17%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDE 60
+ E ++ Q + + E E+ KK+EL+ ++ E R+ + E Q E
Sbjct: 890 LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949
Query: 61 KYREEKQNKMMKLR-QDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHG 119
K + ++Q ++ + ++ E + + + + + +++E + +Q+++ E K
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 120 REEKQKLITQRQEQ 133
E L T E+
Sbjct: 1010 EERVSDLTTNLAEE 1023
Score = 36.7 bits (85), Expect = 0.001
Identities = 26/135 (19%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
Query: 2 LEAESKEQALQRQKVEYRK-ALEQQMQEELDKKKEL--KYRQYQEEQRVTQGEIDRMTKQ 58
LE + +E+ RQK++ K + ++++ D + + + +E+++ + +
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV-SDLTT 1018
Query: 59 DEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKH 118
+ EEK + KL+ E + E + E+ QELEK +SS ++
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Query: 119 GREEKQKLITQRQEQ 133
+ + +L Q ++
Sbjct: 1079 LQAQIAELKAQLAKK 1093
Score = 35.6 bits (82), Expect = 0.003
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 5 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYRE 64
E +E+ Q+ + E +K +Q + E ++E RQ + ++VT + + D E
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 65 EKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEV---EMKHGRE 121
++ NK+ K R+ +EE + E+ + + L K + S EV + + R+
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Query: 122 EKQKLITQRQEQCAQSLQEI 141
E +K+ + + + + ++I
Sbjct: 1057 ELEKIKRKLEGESSDLHEQI 1076
Score = 33.7 bits (77), Expect = 0.014
Identities = 18/125 (14%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 9 QALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQN 68
+ Q E + L++++Q E + E + + + + + E + EE+++
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 69 -KMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREEKQKLI 127
++ ++ M++ + E+ + E+ Q+L+ + + + + E ++ ++ KL
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 128 TQRQE 132
+R+
Sbjct: 1004 KERKL 1008
Score = 33.3 bits (76), Expect = 0.018
Identities = 22/139 (15%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDE 60
+L+ +E+ +Q + E ++ E+Q + E + K+ + E++ E + +
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 61 KYREEKQNKMMKLRQDMEES-------LKSREQMRQHEKLQNQELEKKVESYWEQSSRHE 113
EE + ++ +Q++EE ++ E+ Q + + +++++++ EQ E
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 114 VEMKHGREEKQKLITQRQE 132
+ + EK + ++
Sbjct: 969 AARQKLQLEKVTADGKIKK 987
Score = 33.3 bits (76), Expect = 0.023
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Query: 2 LEAESKEQALQRQKVEYRKALEQQMQEELDKKK---ELKYRQYQEEQRVTQGEIDRMTKQ 58
L + ++E R E++ ++EL+K K E + E+ Q +I + Q
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 59 DEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKH 118
K EE Q + +L + + + +++R+ E +L++ +ES ++ E + +
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELES-HISDLQEDLESEKAARNKAEKQKRD 1148
Query: 119 GREEKQKLITQRQEQCAQSLQEI 141
EE + L T+ ++ + +
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQ 1171
Score = 32.9 bits (75), Expect = 0.027
Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 9/144 (6%)
Query: 2 LEAESKEQALQRQKVEYRKALEQQMQEELDKKKEL---KYRQYQEEQRVTQGEIDRMTKQ 58
L+ E + +K+E + + +L K+++L + + + +TK
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 59 DEKYR------EEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRH 112
K+ E + K K RQ++E+ + E Q EL+ ++ Q ++
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 113 EVEMKHGREEKQKLITQRQEQCAQ 136
E E++ + +Q+ +
Sbjct: 1094 EEELQAALARLEDETSQKNNALKK 1117
Score = 31.7 bits (72), Expect = 0.065
Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKKEL--KYRQYQEEQRVTQGEIDRMTKQ 58
E + + Q++ K LEQ+ + ++K L K + E + R+ +
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921
Query: 59 DEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKH 118
++ EE ++M ++ EE + + ++ + Q +LE+++E + ++E
Sbjct: 922 -KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 119 GREEKQKLITQRQEQ 133
+ +K+
Sbjct: 981 ADGKIKKMEDDILIM 995
Score = 31.3 bits (71), Expect = 0.10
Identities = 26/145 (17%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQ---QMQEELDKKKELKYRQYQEEQRVTQGEIDRMTK 57
+L E + L +++ + + + EE +K K L + + E ++ E++ K
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS--ELEVRLK 1049
Query: 58 QDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMK 117
++EK R+E + KL + + + +++ +L KK E +R E E
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Query: 118 HGREEKQKLITQRQEQCAQSLQEIN 142
+ K I + + + +++
Sbjct: 1110 Q-KNNALKKIRELESHISDLQEDLE 1133
Score = 30.6 bits (69), Expect = 0.17
Identities = 19/137 (13%), Positives = 54/137 (39%), Gaps = 8/137 (5%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKY 62
+ E Q L++ K + ++ + + ++ + + + + E+ + E
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA--ELKAQLAKKEEELQAALARLEDE 1107
Query: 63 REEKQNKMMKLR------QDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEM 116
+K N + K+R D++E L+S + R + Q ++L +++E+ +
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Query: 117 KHGREEKQKLITQRQEQ 133
+E + ++
Sbjct: 1168 ATQQELRGSDYKDDDDK 1184
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.005
Identities = 10/87 (11%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 60 EKYREEKQNKMMKLRQDMEESLKSREQMRQHEKL----QNQELEKKV-ESYWEQSSRHEV 114
+ ++ +K+ + + L+ E + ++L + + + W + +V
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 115 EMKHGREEKQKLITQRQEQCAQSLQEI 141
+ + K L+ ++ ++ S+ I
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSI 431
Score = 32.1 bits (72), Expect = 0.048
Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 43/163 (26%)
Query: 11 LQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDE---------- 60
L +Q+ +K +E E L + + EQR +Q +
Sbjct: 72 LSKQEEMVQKFVE----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 61 KY---REEKQNKMMKLRQDMEESLKSREQMRQH------------EKLQNQELEKKVES- 104
KY R + +KLRQ + E L+ + + + + +++ K++
Sbjct: 128 KYNVSRLQ---PYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 105 -YW---EQSSRHEVEMKHGREEKQKLITQ-RQEQCAQSLQEIN 142
+W + + E + E QKL+ Q ++S N
Sbjct: 184 IFWLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDHSSN 222
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 31.3 bits (72), Expect = 0.075
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 46 RVTQGEIDRMTKQDEKYREE--KQNKMMKLRQDME 78
R+++ +I+RM ++ EKY+ E KQ + + +E
Sbjct: 509 RLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 543
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 31.4 bits (71), Expect = 0.076
Identities = 12/117 (10%), Positives = 45/117 (38%)
Query: 24 QQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKS 83
+++E++K +++R + + QGEID++ E + + + ++ +E+ K
Sbjct: 117 TSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKL 176
Query: 84 REQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREEKQKLITQRQEQCAQSLQE 140
++ + + + + E+ ++ + + + ++
Sbjct: 177 LKEKMKKLENEISSGGAGGAGGSLEKKLKEMSDEYNNLDLLRKYLFDKSNFSRYFTG 233
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 0.35
Identities = 11/96 (11%), Positives = 41/96 (42%)
Query: 5 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYRE 64
Q K Q+ +EE+ + + ++ + E + + E+ + +K +
Sbjct: 317 PFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQ 376
Query: 65 EKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 100
+++ K+ ++ +++ + + +Q + +L + +
Sbjct: 377 DEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQ 412
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 29.1 bits (66), Expect = 0.35
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 46 RVTQGEIDRMTKQDEKYREE 65
R+TQ +IDRM + +++ +E
Sbjct: 118 RLTQSDIDRMVHEAKQFEKE 137
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 28.7 bits (65), Expect = 0.38
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 46 RVTQGEIDRMTKQDEKYREE 65
R+TQ EIDRM ++ EK+ E
Sbjct: 118 RLTQEEIDRMVEEAEKFASE 137
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 29.2 bits (66), Expect = 0.38
Identities = 7/41 (17%), Positives = 25/41 (60%)
Query: 6 SKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQR 46
K + R+ EY++ +++++ E+ + +++ Y++Y ++
Sbjct: 143 IKYPEIARKVKEYKERMKREVLEKAQRLEQIGYKEYLNQKE 183
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 0.52
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 39 RQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQEL 98
R+++EEQR R+ + D + +Q K ++D+EE + + + + K+ N+
Sbjct: 88 RKWREEQR------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
Query: 99 EKK 101
+K
Sbjct: 142 DKA 144
Score = 28.2 bits (62), Expect = 0.77
Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 50 GEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQS 109
+ DR+T++ E R+ ++ + +L++ S ++ R+ K ++LE+ + EQ
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK---KDLEEWNQRQSEQV 131
Query: 110 SRHEVEMKHGREEKQKLITQRQE 132
++++ R + Q
Sbjct: 132 EKNKINN---RIADKAFYQQPDA 151
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 28.3 bits (64), Expect = 0.54
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 46 RVTQGEIDRMTKQDEKYREE 65
R++ +I+RM +K+ +
Sbjct: 118 RLSPEDIERMINDADKFAAD 137
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 28.5 bits (64), Expect = 0.76
Identities = 17/111 (15%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 30 LDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQ 89
DK+ L+ R + + Q + K+ +K + + + + + + SL+++ ++ +
Sbjct: 775 NDKQASLESRDFGDSIESVQSFM-NAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIK 833
Query: 90 HEKLQNQELEKKVESYWEQSSRHEVEMKHGREEKQKLITQRQEQCAQSLQE 140
E E + + + + E ++ +RQ++ A LQ+
Sbjct: 834 REPFVAPAGLTPNEI--DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 882
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 27.6 bits (62), Expect = 1.0
Identities = 4/38 (10%), Positives = 16/38 (42%)
Query: 6 SKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQE 43
+ L+ + V ++ L + + + + L + ++
Sbjct: 137 AANPQLRARIVAFQDRLADVVAAKDAELQRLAGKLTRD 174
>2ksd_A Aerobic respiration control sensor protein ARCB; methods
development, histidine kinase receptor, membrane domain,
two-helical hairpin; NMR {Escherichia coli}
Length = 115
Score = 27.2 bits (60), Expect = 1.0
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 74 RQDMEESLKSREQMRQHEKLQNQELEKKVE 103
RQ + ++ E+MR+ + N +L+ +
Sbjct: 84 RQRLSRLVQKLEEMRERDLSLNVQLKDNIA 113
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 27.8 bits (62), Expect = 1.2
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 5 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 53
E + ++ + +++ + L E++ + E+ V GE
Sbjct: 267 EIAGKRREQDVKWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHS 315
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.6 bits (61), Expect = 1.9
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 25/142 (17%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQR---VTQGEIDRMTKQD 59
EAE L +R A+ + E R + + R VT Q
Sbjct: 1845 EAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQV 1904
Query: 60 EKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHG 119
EK++++ + + + L +KL+ + E +V+ +++
Sbjct: 1905 VLLINEKRDQLEEEQLHLNIGL---------KKLR--DTEAQVK-----------DLQVS 1942
Query: 120 REEKQKLITQRQEQCAQSLQEI 141
+K + + + EQ Q L+++
Sbjct: 1943 LAQKNRELDVKNEQANQKLKQM 1964
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 27.3 bits (61), Expect = 2.2
Identities = 5/60 (8%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 46 RVTQGEIDRMTKQDEKYREE--KQNKMMKLRQDMEE---SLKSREQMRQHEKLQNQELEK 100
+ +++ + +++ + + + + +EE +L+ + + + E K
Sbjct: 523 GLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTK 582
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.1 bits (59), Expect = 2.2
Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 1/140 (0%)
Query: 3 EAESKEQALQRQKVEYRKALEQQMQEELDKKKE-LKYRQYQEEQRVTQGEIDRMTKQDEK 61
+ L+RQK+ + E+ +E L+ + + + + + + E
Sbjct: 680 LEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEG 739
Query: 62 YREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGRE 121
+ + K L + E L+ +++R+ E + + + S +Q + E +
Sbjct: 740 SVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMT 799
Query: 122 EKQKLITQRQEQCAQSLQEI 141
E T R A ++
Sbjct: 800 EALGPGTIRDLAVAGPEMQV 819
Score = 26.3 bits (57), Expect = 5.2
Identities = 22/145 (15%), Positives = 57/145 (39%), Gaps = 5/145 (3%)
Query: 1 MLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQD- 59
++ +S E QR + +++++ ++ + ++ + Q ++ +G ++R D
Sbjct: 637 SVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQ 696
Query: 60 ---EKYREE-KQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVE 115
EK R+E + + M + + + K+ + R E Q+ E E
Sbjct: 697 SEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETE 756
Query: 116 MKHGREEKQKLITQRQEQCAQSLQE 140
+ R +K + + + L+
Sbjct: 757 AELERVKKVREMELIYARAQLELEV 781
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 26.7 bits (58), Expect = 3.5
Identities = 17/103 (16%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 2 LEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEK 61
L + + + R+ LE +++EL+K + E T+ ++D K +
Sbjct: 28 LSKAMSQDGASQFQEVIRQELELSVKKELEK---ILTTASSHEFEHTKKDLDGFRKLFHR 84
Query: 62 YREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVES 104
+ +EK + + + ++ +EK++ + L + S
Sbjct: 85 FLQEKGP---SVDWGKIQRPP-EDSIQPYEKIKARGLPDNISS 123
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 26.4 bits (58), Expect = 4.3
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 7 KEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 53
+ ++QKV +++ + E ++ + EQ+V G +
Sbjct: 287 TAKRRKQQKVWMWNLIQESVLEHFRTHPTVREQIPLLEQKVLIGALS 333
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 26.4 bits (59), Expect = 4.5
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 80 SLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGRE 121
+ M E+ + +E+E KV+ +W++ EV +E
Sbjct: 14 LVPRGSHM--QEQYRPEEIESKVQLHWDEKRTFEVTEDESKE 53
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 25.9 bits (57), Expect = 5.1
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 5 ESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 53
++ Q+ RK E+++ L ++ Q V +
Sbjct: 267 RLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLS 315
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 25.6 bits (56), Expect = 6.5
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 7 KEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEID 53
+ +Q + + + + + ++ + + E+RV GE+
Sbjct: 292 DARRRDQQVDWTWQLVRDAVLDRVWSNPTVRKVRSELERRVRAGELT 338
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 25.7 bits (56), Expect = 6.9
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 51 EIDRMTKQD---EKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKKVESYWE 107
E++ + + KY ++ + K K +++ + ++ Q L K V SY +
Sbjct: 101 ELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNK 160
Query: 108 QSSRHEVEMKHGREEKQKLITQR 130
+ +++M+ QK I +R
Sbjct: 161 ILTEEDLQMRRLATALQKEIGER 183
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 25.7 bits (56), Expect = 7.5
Identities = 17/103 (16%), Positives = 31/103 (30%)
Query: 16 VEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQ 75
V + + E ++ +ELK Y+ +G+ +N MM+L +
Sbjct: 485 VRWYLDHKDFKPEFVETAEELKTLIYRPYYNYEKGKGASTCPVVNPEYISPKNFMMRLIK 544
Query: 76 DMEESLKSREQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKH 118
+E K +E E S + H
Sbjct: 545 CTDEYGGGVGTYYNTSKALLDTGFWLMEMLEEDSLKLAARDLH 587
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 7.8
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 91 EKLQNQELEKKVESYWEQSS 110
EK ++L+ ++ Y + S+
Sbjct: 18 EKQALKKLQASLKLYADDSA 37
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 25.6 bits (55), Expect = 7.8
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 4/118 (3%)
Query: 24 QQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKS 83
+ +Q+E D K + Q + T G KQ++ ++ + R+++ +
Sbjct: 29 EDLQDEYD----FKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIE 84
Query: 84 REQMRQHEKLQNQELEKKVESYWEQSSRHEVEMKHGREEKQKLITQRQEQCAQSLQEI 141
+ + + E +QS+ ++ Q T E Q Q++
Sbjct: 85 LLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQL 142
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 25.4 bits (55), Expect = 8.6
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 8 EQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQ 67
E++ + R ++++ EL + + L+ + E+ + ++ E
Sbjct: 896 EKSARALIDAARNEADEKLSAELSRLEALRAVN----PNIRDDELTAIESNRQQVMESLD 951
Query: 68 NKMMKL 73
+L
Sbjct: 952 QAGWRL 957
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 25.3 bits (55), Expect = 9.7
Identities = 6/35 (17%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 91 EKLQNQELEKKVESYWEQSSRHEVEMKHGREEKQK 125
+L + +E+K + W ++ E ++ + +++K
Sbjct: 2 AELNFKAIEEKWQKRWLEAKIFEPNIRD-KPKEKK 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.119 0.302
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,910,161
Number of extensions: 101399
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 307
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 52 (24.4 bits)