Query psy7576
Match_columns 481
No_of_seqs 145 out of 194
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 21:58:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2428|consensus 100.0 2.5E-75 5.5E-80 597.0 20.6 324 99-456 75-409 (443)
2 PF04004 Leo1: Leo1-like prote 100.0 1.2E-54 2.6E-59 400.2 13.7 165 197-361 1-171 (171)
3 COG5402 Uncharacterized conser 44.0 23 0.00049 34.8 3.2 36 259-294 126-162 (194)
4 KOG2002|consensus 35.0 1.2E+02 0.0026 36.6 7.6 25 43-67 450-474 (1018)
5 PF08940 DUF1918: Domain of un 29.4 39 0.00085 27.7 1.9 15 262-276 36-51 (58)
6 PF14160 FAM110_C: Centrosome- 28.0 12 0.00026 34.0 -1.4 15 253-267 89-103 (111)
7 PRK14741 spoVM stage V sporula 24.7 33 0.00071 24.0 0.6 12 196-207 2-13 (26)
8 TIGR03054 photo_alph_chp1 puta 24.4 47 0.001 31.0 1.8 14 262-275 97-110 (135)
9 PF05132 RNA_pol_Rpc4: RNA pol 24.3 1.9E+02 0.004 26.1 5.5 24 262-285 70-93 (131)
10 KOG4487|consensus 23.8 97 0.0021 28.1 3.5 52 264-316 43-103 (110)
No 1
>KOG2428|consensus
Probab=100.00 E-value=2.5e-75 Score=596.99 Aligned_cols=324 Identities=52% Similarity=0.824 Sum_probs=275.8
Q ss_pred HhhccchhhhcCCCCCCCCCCCcCcccccccccCCCccccccchhhhhhhhccCCCCCCccccccccCCCCCCCCCCCCC
Q psy7576 99 LLLKLNAEALFGDASDISTDDDDDGKLQVVEEEGDGEGERRERDEDARSDASRRGSDREDDEDKENRTETGEDKEEEEPV 178 (481)
Q Consensus 99 ~~~~~~~~~lfgd~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~e~~p 178 (481)
.+.++++.+||||.+|++++.+.+....... ......+++..+..++++++
T Consensus 75 ~k~s~~e~Dl~gd~dD~~~~~d~~~~~~e~~-----------------------------~~~~s~~~~~e~~~e~e~~~ 125 (443)
T KOG2428|consen 75 EKKSPGEMDLFGDEDDLSDDSDGDGKPPESD-----------------------------GLVDSEAEEQEEAQEKEPPV 125 (443)
T ss_pred cccCcccccccccccccccccccCCCCCCCC-----------------------------CcccccccchhhccccccCC
Confidence 3456777999999999996655543222100 00111122333577889999
Q ss_pred cceeeeecC-CcccCCCC-ceEEeecCCcccccCCCCCcCcCccccccccccchhhhhhhhcccceEEEEEeccCCCCCc
Q psy7576 179 ETRIDVEIP-KISCDLGR-EMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDL 256 (481)
Q Consensus 179 ~t~idVeLP-ri~~~~~~-~l~~lKmPNFLsIep~PFDPeTye~e~~eee~lDeegr~r~kl~vENTIRWR~~~d~~G~~ 256 (481)
+++++|++| +++++++. .+||+||||||+|+|+||||+||+++++++..+|+++|++++|+++||||||+.++.+|+.
T Consensus 126 e~v~evevp~~~n~~~~~~~~~fvkiPNFLsVep~PfDPetyede~~~~~~~Dee~r~r~klkveNTVRWR~~~d~~g~~ 205 (443)
T KOG2428|consen 126 ETVLEVEVPIFVNPDLGKNPSFFVKIPNFLSVEPKPFDPETYEDEFEDEALLDEEGRQRLKLKVENTVRWRERRDKDGNK 205 (443)
T ss_pred CcceEeecccccCCccCCCccceeecCcccccCCcCCChhhhhhhhhhhhhcccchhhhhhhhhcceeeEeeeecCCCCc
Confidence 999999999 78888765 5699999999999999999999999998888999999999999999999999999999999
Q ss_pred eecccccEEEecCCceeeeeccceeeeecccCCCCCceEEEecCceeeccceecceEEeeeCCCChHHHHHHHHHHHhhc
Q psy7576 257 VKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRS 336 (481)
Q Consensus 257 vkESNARIVRWSDGSlSL~IGsE~FDI~~~pL~~d~nhLyvrq~~~LQgqav~~~kLtfrPtSt~S~THrkLT~sVA~R~ 336 (481)
++|||||||||||||||||||||+|||+.+||.++++|||++|+++||+|++|+++||||||||+|+||++||+.||.|.
T Consensus 206 ~kESNAriVrWSDGS~SL~lGNEvfDv~~~pl~~~~nhl~vrq~t~l~~Q~~ik~kltFrP~S~~S~tHrklt~~~a~r~ 285 (443)
T KOG2428|consen 206 IKESNARIVRWSDGSMSLHLGNEVFDVYKQPLSGNQNHLFVRQGTGLQGQAVIKKKLTFRPHSTDSATHRKLTLNRADRS 285 (443)
T ss_pred ceeccceEEEecCCceeEeechhHHHhhhcccccCcceeEEecccccchhheeeceeEeeccccchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEEeeccCCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccCCC-----CCCCCCCCCCCCCCccccccHH
Q psy7576 337 NKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLRKETKTK---RTREKGAS-----SRLSAGYLEGDDDDDEGAISLS 408 (481)
Q Consensus 337 ~Kt~kVKil~~v~~DPE~eKke~eK~EeEkLRa~~Rre~k~~---r~r~~g~~-----~~l~~~yledd~~dDe~~~sl~ 408 (481)
+|+++|+|++.|+.|||.+|.+++|+|+++|||.+|++++.+ +.+..+.. ..-+..|.++++.+.++.++++
T Consensus 286 ~k~skvk~~~~vg~DPE~~k~~~~KkEee~LRa~~R~~~~~~~~~~~r~~~~~~e~~~~~~n~~~~~~~~~e~e~~~~~~ 365 (443)
T KOG2428|consen 286 QKTSKVKILTIVGKDPEHEKREREKKEEERLRASRRREQRALMNPKQREKRYAEEDSDSAYNSPTTYDEEEEGEDEIRLA 365 (443)
T ss_pred cccccceeeeeccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccccCCCCccccccccchhhhhh
Confidence 999999999999999999999999999999999999998877 33332222 1124556666777788899999
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCccCCCCC-ccchhhhccCCCCccccc
Q psy7576 409 AIKNKYNAKKNPAGASGAAPSRNIYSSDED-ASDLELRTKKHDKPKRVL 456 (481)
Q Consensus 409 aiK~~~k~~~~~~~~~~~~~~~~iYS~ded-~sD~~~r~~~~~~~~k~~ 456 (481)
+||+.|+.. ++.....+-||++|+| ++|++.++.++..+.+.+
T Consensus 366 a~k~~~~~~-----~~~~~~~~d~~~~d~de~sd~e~e~~~~~~kee~~ 409 (443)
T KOG2428|consen 366 ALKNRYKEA-----GQSEEETADIEESDEDESSDEEAEKEKREEKEEKL 409 (443)
T ss_pred hhhhhhccc-----cccccccccccccccccccchhHHHHHHHHhhhcc
Confidence 999999873 3567789999999999 788888888876544444
No 2
>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ]. The Paf1 complex probably functions during the elongation phase of transcription [].
Probab=100.00 E-value=1.2e-54 Score=400.20 Aligned_cols=165 Identities=56% Similarity=0.903 Sum_probs=151.4
Q ss_pred eEEeecCCcccccCCCCCcCcCcccc-ccccccchhhhhhhhcccceEEEEEeccCCCCCceecccccEEEecCCceeee
Q psy7576 197 MHFVKLPNFLSVETRPFDPETYEDEI-EDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLH 275 (481)
Q Consensus 197 l~~lKmPNFLsIep~PFDPeTye~e~-~eee~lDeegr~r~kl~vENTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL~ 275 (481)
||++||||||+|+|+||||+||+++. +++..+|++++.++++.++|||||||..+++|+.++||||||||||||||||+
T Consensus 1 l~~~k~Pnfl~iep~pFdp~t~~~~~~~~~~~~d~~~~~~~~~~~~ntIRWR~~~~~~g~~~~eSNAriVrWsDGS~sL~ 80 (171)
T PF04004_consen 1 LYLLKMPNFLSIEPRPFDPETFEEDEEEEDELKDEEGRERLKLKVENTIRWRYSPDETGEKVKESNARIVRWSDGSLSLH 80 (171)
T ss_pred CceecCCCcceeCCccCCchhcCCcccccccccchhhhhhhccccccEEEEeecCCCCCCEeeecccEEEEEcCCceEEE
Confidence 69999999999999999999998874 33466888899999999999999999999999999999999999999999999
Q ss_pred eccceeee-ecccCCC-CCceEEEecC--ceeeccceecceEEeeeCCCChHHHHHHHHHHHhhcccccc-eEEeeccCC
Q psy7576 276 LGSEIFDV-YKQPLQG-DHNHLYIRQG--TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTG-IKILGQVGY 350 (481)
Q Consensus 276 IGsE~FDI-~~~pL~~-d~nhLyvrq~--~~LQgqav~~~kLtfrPtSt~S~THrkLT~sVA~R~~Kt~k-VKil~~v~~ 350 (481)
||+|+||| ...|+.. +++|||++++ .+||++++|+++|+|||+|++|.||++|+++|+.|+.|+.+ +++++.++.
T Consensus 81 iG~E~fdi~~~~~~~~~~~~~L~~~~~~~~~l~~~~~i~~~l~~rP~s~~s~thr~l~~~~~~r~~k~~~~~~~~~~~~~ 160 (171)
T PF04004_consen 81 IGNEVFDIQKKYPLVQDDHNYLFVRHGSSGVLQGQGHITKKLTFRPASTDSATHRRLTQAVASRSSKKQQKVKMLIVTTE 160 (171)
T ss_pred eccEEEEeccccccccCCcceEEEEcCCcceEEEEEEecccEEEecCCccCHHHHHHHHHHHhhhcccccccccceeccC
Confidence 99999999 8888854 7899999998 78999999999999999999999999999999999977664 566666789
Q ss_pred CChHHHHHHHH
Q psy7576 351 DPDANRYEKIK 361 (481)
Q Consensus 351 DPE~eKke~eK 361 (481)
|||++|+++||
T Consensus 161 DPE~~k~~~ek 171 (171)
T PF04004_consen 161 DPELEKKEAEK 171 (171)
T ss_pred CHHHHHHHhcC
Confidence 99999999875
No 3
>COG5402 Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=23 Score=34.81 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=23.7
Q ss_pred cccccEEEec-CCceeeeeccceeeeecccCCCCCce
Q psy7576 259 ESNARLVKWS-DGSLSLHLGSEIFDVYKQPLQGDHNH 294 (481)
Q Consensus 259 ESNARIVRWS-DGSlSL~IGsE~FDI~~~pL~~d~nh 294 (481)
-=|.+-|-|| |||++++|+-.+-.=.=.|+.+..|+
T Consensus 126 Al~s~~Vlrs~Dg~~~I~vsp~a~pgnWl~~~g~g~f 162 (194)
T COG5402 126 ALNSRTVLRSADGSWVITVSPDAQPGNWLPVRGEGNF 162 (194)
T ss_pred heeceeeeeecCCcEEEEECCCCCCCceeEecCCccE
Confidence 3488999999 99999999855433322333333344
No 4
>KOG2002|consensus
Probab=35.04 E-value=1.2e+02 Score=36.58 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=17.7
Q ss_pred hcccccccceecccccCChHhhhhh
Q psy7576 43 VGQEHLKPIGVLQDHLGRIEVAADQ 67 (481)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (481)
++-|.|.-||+|+-|+|.|+.|.+-
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHH
Confidence 4456666777777788888777665
No 5
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=29.38 E-value=39 Score=27.68 Aligned_cols=15 Identities=47% Similarity=0.840 Sum_probs=11.3
Q ss_pred ccEEEecC-Cceeeee
Q psy7576 262 ARLVKWSD-GSLSLHL 276 (481)
Q Consensus 262 ARIVRWSD-GSlSL~I 276 (481)
--.|||+| |-.+|..
T Consensus 36 PY~VRw~D~Ghe~lv~ 51 (58)
T PF08940_consen 36 PYLVRWDDTGHESLVF 51 (58)
T ss_dssp -EEEEETTTTEEEEE-
T ss_pred CEEEEecCCCcEEEEe
Confidence 35899999 9888863
No 6
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=27.97 E-value=12 Score=33.96 Aligned_cols=15 Identities=47% Similarity=0.831 Sum_probs=12.7
Q ss_pred CCCceecccccEEEe
Q psy7576 253 DGDLVKESNARLVKW 267 (481)
Q Consensus 253 ~G~~vkESNARIVRW 267 (481)
.|--|.|=|||||+|
T Consensus 89 ~~~SIIERNARIIKW 103 (111)
T PF14160_consen 89 YGVSIIERNARIIKW 103 (111)
T ss_pred CCCceeeehhHHHHH
Confidence 455688999999999
No 7
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=24.72 E-value=33 Score=23.98 Aligned_cols=12 Identities=42% Similarity=0.791 Sum_probs=10.0
Q ss_pred ceEEeecCCccc
Q psy7576 196 EMHFVKLPNFLS 207 (481)
Q Consensus 196 ~l~~lKmPNFLs 207 (481)
..|.+|+|.||+
T Consensus 2 kfytiklpkflg 13 (26)
T PRK14741 2 KFYTIKLPKFLG 13 (26)
T ss_pred ceEEEeccHHHH
Confidence 368999999986
No 8
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=24.42 E-value=47 Score=31.05 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=12.5
Q ss_pred ccEEEecCCceeee
Q psy7576 262 ARLVKWSDGSLSLH 275 (481)
Q Consensus 262 ARIVRWSDGSlSL~ 275 (481)
=+++||+||-+||.
T Consensus 97 f~L~r~~dGrltL~ 110 (135)
T TIGR03054 97 FRLTRYDNGRLTLT 110 (135)
T ss_pred EEEEEEeCCcEEEE
Confidence 48999999999985
No 9
>PF05132 RNA_pol_Rpc4: RNA polymerase III RPC4; InterPro: IPR007811 This family comprises a specific subunit for Pol III, the tRNA specific polymerase.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006383 transcription from RNA polymerase III promoter, 0005666 DNA-directed RNA polymerase III complex
Probab=24.31 E-value=1.9e+02 Score=26.14 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.3
Q ss_pred ccEEEecCCceeeeeccceeeeec
Q psy7576 262 ARLVKWSDGSLSLHLGSEIFDVYK 285 (481)
Q Consensus 262 ARIVRWSDGSlSL~IGsE~FDI~~ 285 (481)
-+|+-.-.|.++|.||+-.|||..
T Consensus 70 GkL~V~kSGkv~l~iG~~~~dV~~ 93 (131)
T PF05132_consen 70 GKLRVHKSGKVTLKIGGVVFDVSP 93 (131)
T ss_pred EEEEEEeCCcEEEEECCEEEEecC
Confidence 356777799999999999999964
No 10
>KOG4487|consensus
Probab=23.77 E-value=97 Score=28.13 Aligned_cols=52 Identities=25% Similarity=0.276 Sum_probs=30.5
Q ss_pred EEEecCCc-eeeeeccceeeeec----ccCC----CCCceEEEecCceeeccceecceEEee
Q psy7576 264 LVKWSDGS-LSLHLGSEIFDVYK----QPLQ----GDHNHLYIRQGTGLQGQAVFRTKLSFR 316 (481)
Q Consensus 264 IVRWSDGS-lSL~IGsE~FDI~~----~pL~----~d~nhLyvrq~~~LQgqav~~~kLtfr 316 (481)
=+.|+||+ +.+.+|+--++=.. .||- -+.+| |-.-..-++-.+||+.++-|.
T Consensus 43 r~c~~D~~q~~~~~G~~~l~G~v~k~~rpLlvv~Kld~~h-~~~k~~~~evv~Vir~KviFK 103 (110)
T KOG4487|consen 43 RFCEQDGEQTLIRFGSLQLDGEVGKKQRPLLVVTKLDVMH-FNSKDNKVEVVDVIRYKVIFK 103 (110)
T ss_pred ceeccCCCeEEEEEeeEEEeeeeeeecceeEEEEeehhhh-hcCCCceEEeeeeEeEEEEec
Confidence 36899999 88889987765432 2321 01122 111122356677888888774
Done!