Query psy7576
Match_columns 481
No_of_seqs 145 out of 194
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 21:58:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2edj_A Roundabout homolog 2; K 21.4 2.5E+02 0.0084 20.8 6.3 29 242-274 38-66 (100)
2 1ej5_A WAsp, wiskott-aldrich s 21.1 29 0.00098 29.9 0.9 14 428-441 92-105 (107)
3 2kdg_A Myotilin; immonoglobuli 18.2 2.9E+02 0.0098 20.2 6.0 32 242-277 35-67 (100)
4 1f3u_A Transcription initiatio 18.2 26 0.00088 30.4 0.0 14 194-207 14-27 (118)
5 2eo9_A Roundabout homolog 1; b 17.8 1.2E+02 0.004 23.5 3.8 29 242-274 38-66 (118)
6 2bk8_A Connectin, M1, titin he 16.0 2.8E+02 0.0095 20.4 5.5 33 241-277 31-63 (97)
7 4fa8_A Secreted protein BARF1; 15.7 2E+02 0.0068 25.2 5.2 32 242-276 136-169 (203)
8 2lvc_A Obscurin-like protein 1 13.5 1.3E+02 0.0045 23.2 3.1 31 242-276 35-65 (91)
9 2xk0_A Polycomb protein PCL; t 13.1 79 0.0027 25.6 1.6 11 264-274 23-33 (69)
10 3knb_B Obscurin-like protein 1 12.9 2.4E+02 0.0081 22.2 4.5 30 242-276 43-73 (107)
No 1
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.44 E-value=2.5e+02 Score=20.77 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=18.4
Q ss_pred eEEEEEeccCCCCCceecccccEEEecCCceee
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVKWSDGSLSL 274 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL 274 (481)
-+|.|.+. |..+...+.++.-..+|+|+|
T Consensus 38 p~v~W~~~----~~~~~~~~~~~~~~~~~~L~i 66 (100)
T 2edj_A 38 PVISWLKE----GFTFPGRDPRATIQEQGTLQI 66 (100)
T ss_dssp CEEEEEES----SSEESSSCSSCEECTTCCEEE
T ss_pred CEEEEEEC----CEECCCCCCCEEEcCCCEEEE
Confidence 46899873 445555666776667775443
No 2
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=21.14 E-value=29 Score=29.95 Aligned_cols=14 Identities=50% Similarity=0.518 Sum_probs=11.1
Q ss_pred CCCCccCCCCCccc
Q psy7576 428 PSRNIYSSDEDASD 441 (481)
Q Consensus 428 ~~~~iYS~ded~sD 441 (481)
+...|||||||++|
T Consensus 92 r~~~i~s~~e~~~~ 105 (107)
T 1ej5_A 92 RSRAIHSSDEGEDQ 105 (107)
T ss_dssp GSSCCCCCCSSCCS
T ss_pred HhhcccCCCccccc
Confidence 34579999999775
No 3
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=18.17 E-value=2.9e+02 Score=20.23 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEEeccCCCCCceeccc-ccEEEecCCceeeeec
Q psy7576 242 NTIRWRDTFNKDGDLVKESN-ARLVKWSDGSLSLHLG 277 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESN-ARIVRWSDGSlSL~IG 277 (481)
-+|.|.+. |..+..++ .+++...+|..+|.|-
T Consensus 35 p~v~W~~~----g~~~~~~~~~~~~~~~~~~~~L~i~ 67 (100)
T 2kdg_A 35 PDVSWYLN----GRTVQSDDLHKMIVSEKGLHSLIFE 67 (100)
T ss_dssp CEEEEEET----TEEECCCSSSCEEEETTTEEEEEES
T ss_pred CEEEEEEC----CEECcCCCcEEEEEcCCCeEEEEEC
Confidence 47899873 44444433 4667777887777653
No 4
>1f3u_A Transcription initiation factor IIF, beta subunit; general transcription initiation and elongation factor, RNA polymerase II; 1.70A {Homo sapiens} SCOP: b.65.1.1
Probab=18.16 E-value=26 Score=30.35 Aligned_cols=14 Identities=36% Similarity=0.721 Sum_probs=12.3
Q ss_pred CCceEEeecCCccc
Q psy7576 194 GREMHFVKLPNFLS 207 (481)
Q Consensus 194 ~~~l~~lKmPNFLs 207 (481)
...+|++|+|.||.
T Consensus 14 ~~~VWLvKvPk~L~ 27 (118)
T 1f3u_A 14 NTGVWLVKVPKYLS 27 (118)
T ss_dssp TCEEEEEEEEHHHH
T ss_pred CceEEEEECCHHHH
Confidence 46799999999996
No 5
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.80 E-value=1.2e+02 Score=23.51 Aligned_cols=29 Identities=38% Similarity=0.732 Sum_probs=19.5
Q ss_pred eEEEEEeccCCCCCceecccccEEEecCCceee
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVKWSDGSLSL 274 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL 274 (481)
-+|.|.+ +|..+...+.++.-..+|+|+|
T Consensus 38 p~i~W~k----~g~~~~~~~~~~~~~~~~~L~i 66 (118)
T 2eo9_A 38 PTILWRK----DGVLVSTQDSRIKQLENGVLQI 66 (118)
T ss_dssp CEEEEEE----SSSBCCTTSTTEEEEETTEEEE
T ss_pred CEEEEEE----CCEECcCCCCeEEEccCCEEEE
Confidence 3789987 3455555677777777875544
No 6
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=16.03 E-value=2.8e+02 Score=20.40 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=18.9
Q ss_pred ceEEEEEeccCCCCCceecccccEEEecCCceeeeec
Q psy7576 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLG 277 (481)
Q Consensus 241 ENTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL~IG 277 (481)
..+|.|.+. |..+..+....+...+|..+|.|=
T Consensus 31 ~~~v~W~~~----~~~~~~~~~~~~~~~~~~~~L~i~ 63 (97)
T 2bk8_A 31 STQVTWYFG----VRQLENSEKYEITYEDGVAILYVK 63 (97)
T ss_dssp TCEEEEEET----TEECCSSSSEEEEEETTEEEEEEC
T ss_pred CCEEEEEEC----CEECcCCCCEEEEEcCCeEEEEEe
Confidence 347889874 334444444445567776666653
No 7
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=15.73 E-value=2e+02 Score=25.22 Aligned_cols=32 Identities=28% Similarity=0.456 Sum_probs=18.0
Q ss_pred eEEEEEeccCCCCCce--ecccccEEEecCCceeeee
Q psy7576 242 NTIRWRDTFNKDGDLV--KESNARLVKWSDGSLSLHL 276 (481)
Q Consensus 242 NTIRWR~~~d~~G~~v--kESNARIVRWSDGSlSL~I 276 (481)
-+|.|.+. +|.+. ..+|.||.--.||++++.+
T Consensus 136 P~v~W~~~---~~~~~~~~~~~~r~~~~~~g~l~il~ 169 (203)
T 4fa8_A 136 PHVQWLMP---EGVEPAPTAANGGVMKEKDGSLSVAV 169 (203)
T ss_dssp CEEEECCC---------------CCEECTTSCEEEEE
T ss_pred CEEEEEEC---CeeecCcccccceEEEeCCCCEEEEE
Confidence 38999874 33322 2568899999999988754
No 8
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=13.49 E-value=1.3e+02 Score=23.24 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=17.6
Q ss_pred eEEEEEeccCCCCCceecccccEEEecCCceeeee
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHL 276 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL~I 276 (481)
-+|.|.+ +|..+..++-..+.-+++..+|.|
T Consensus 35 ~~v~W~k----~g~~i~~~~~~~i~~~~~~~~L~I 65 (91)
T 2lvc_A 35 APVRWYK----DGQEVEESDFVVLENEGPHRRLVL 65 (91)
T ss_dssp SCCEEEE----TTSCCCCCSSCEEEEETTEEEEEE
T ss_pred cEEEEEE----CCEEeeeeeeeeEEecCCeEEEEe
Confidence 3688986 456655554434444444556665
No 9
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=13.10 E-value=79 Score=25.64 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=8.5
Q ss_pred EEEecCCceee
Q psy7576 264 LVKWSDGSLSL 274 (481)
Q Consensus 264 IVRWSDGSlSL 274 (481)
++||+||-+-|
T Consensus 23 L~rw~DG~fYL 33 (69)
T 2xk0_A 23 FIKCNDGRFYL 33 (69)
T ss_dssp EEECTTSCEEE
T ss_pred EEEecCCCEEE
Confidence 68999996543
No 10
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=12.91 E-value=2.4e+02 Score=22.17 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=16.0
Q ss_pred eEEEEEeccCCCCCceecccccEEEecC-Cceeeee
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVKWSD-GSLSLHL 276 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVRWSD-GSlSL~I 276 (481)
-+|.|.+ +|..+ .++.|+.-..| +..+|.|
T Consensus 43 p~v~W~k----~g~~l-~~~~~~~~~~~~~~~~L~I 73 (107)
T 3knb_B 43 PVVVWEK----GGQQL-AASERLSFPADGAEHGLLL 73 (107)
T ss_dssp CEEEEEE----TTEEC-CCCSSEECCEETTEEEEEE
T ss_pred CEEEEEE----Ccccc-cceeeEEEeecCceEEEEE
Confidence 3799986 34444 34445443334 3445554
Done!