Query psy7576
Match_columns 481
No_of_seqs 145 out of 194
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 21:59:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7576.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7576hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1koaa1 b.1.1.4 (A:6265-6361) 34.7 17 0.0012 26.4 3.8 31 242-276 31-61 (97)
2 d1f3ua_ b.65.1.1 (A:) TFIIF be 18.2 12 0.00088 30.3 0.0 13 195-207 15-27 (118)
3 d1g1ca_ b.1.1.4 (A:) Titin {Hu 15.7 1.4E+02 0.01 21.1 5.7 30 242-276 34-65 (98)
4 d2a7ya1 b.34.6.3 (A:1-80) Hypo 14.3 36 0.0027 26.3 1.9 15 262-276 36-51 (80)
5 d1x5ia1 b.1.2.1 (A:8-120) Neog 13.6 1.8E+02 0.013 20.9 5.9 48 243-294 37-87 (113)
6 d1x9ya2 d.17.1.4 (A:41-211) St 12.9 1.2E+02 0.0089 25.9 5.1 76 258-346 33-120 (171)
7 d1wiua_ b.1.1.4 (A:) Twitchin 12.5 87 0.0063 22.1 3.6 30 242-275 32-61 (93)
8 d1fhga_ b.1.1.4 (A:) Telokin { 10.8 1.2E+02 0.0091 21.5 4.1 31 243-277 39-70 (102)
9 d1hnga1 b.1.1.1 (A:2-99) CD2, 10.0 2.9E+02 0.021 19.8 6.0 25 242-277 27-51 (98)
10 d3ec9a1 d.17.4.10 (A:10-139) U 9.9 1E+02 0.0074 22.4 3.3 24 250-273 90-113 (130)
No 1
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=34.71 E-value=17 Score=26.39 Aligned_cols=31 Identities=16% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEeccCCCCCceecccccEEEecCCceeeee
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHL 276 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL~I 276 (481)
-+|.|.+ +|..+.+++-..+....+..+|.|
T Consensus 31 p~v~W~~----~~~~l~~~~~~~~~~~~~~~~L~I 61 (97)
T d1koaa1 31 PVVTWHK----DDRELKQSVKYMKRYNGNDYGLTI 61 (97)
T ss_dssp CEEEEEE----TTEECCSBTTBBCCCSTTEEEEEE
T ss_pred CEEEEEE----eeeccceeeEEEEEecCCeeEEEe
Confidence 4799987 356666666555666666666665
No 2
>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.17 E-value=12 Score=30.31 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=11.3
Q ss_pred CceEEeecCCccc
Q psy7576 195 REMHFVKLPNFLS 207 (481)
Q Consensus 195 ~~l~~lKmPNFLs 207 (481)
..+|++|+|.||.
T Consensus 15 ~~VWLvKvPkyls 27 (118)
T d1f3ua_ 15 TGVWLVKVPKYLS 27 (118)
T ss_dssp CEEEEEEEEHHHH
T ss_pred ceEEEEECCHHHH
Confidence 4699999999994
No 3
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}
Probab=15.73 E-value=1.4e+02 Score=21.12 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=17.4
Q ss_pred eEEEEEeccCCCCCceecccccEEE--ecCCceeeee
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVK--WSDGSLSLHL 276 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVR--WSDGSlSL~I 276 (481)
-+|.|.. +|..+.. |.++.. =.+|..+|.|
T Consensus 34 p~v~W~k----~~~~i~~-~~~~~~~~~~~~~~~L~I 65 (98)
T d1g1ca_ 34 PECEWYK----NGVKIER-SDRIYWYWPEDNVCELVI 65 (98)
T ss_dssp CEEEEEE----TTEECCC-CSSEEEEEEETTEEEEEE
T ss_pred CeEEEEe----CceEEee-eeeeEEEeccceEEEEEe
Confidence 3789975 3455544 444333 3467777766
No 4
>d2a7ya1 b.34.6.3 (A:1-80) Hypothetical protein Rv2302/MT2359 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.25 E-value=36 Score=26.34 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=12.0
Q ss_pred ccEEEe-cCCceeeee
Q psy7576 262 ARLVKW-SDGSLSLHL 276 (481)
Q Consensus 262 ARIVRW-SDGSlSL~I 276 (481)
--+||| .||-.+|..
T Consensus 36 PY~VRw~ddGHe~lv~ 51 (80)
T d2a7ya1 36 PYVVRWLVNGHETTVY 51 (80)
T ss_dssp CEEEEETTTTEEEEEC
T ss_pred CEEEEeCCCCcEEEEe
Confidence 358999 799888864
No 5
>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.55 E-value=1.8e+02 Score=20.93 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=22.9
Q ss_pred EEEEEeccCCCCCceecccccEEEecCCc---eeeeeccceeeeecccCCCCCce
Q psy7576 243 TIRWRDTFNKDGDLVKESNARLVKWSDGS---LSLHLGSEIFDVYKQPLQGDHNH 294 (481)
Q Consensus 243 TIRWR~~~d~~G~~vkESNARIVRWSDGS---lSL~IGsE~FDI~~~pL~~d~nh 294 (481)
+|+|....+.+|.+ . --+|+|..+. .++.++.....+....|.....|
T Consensus 37 ~v~W~~p~~~~g~i-~---~Y~i~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 87 (113)
T d1x5ia1 37 VVSWTPPENQNIVV-R---GYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHY 87 (113)
T ss_dssp EEEEECCSCTTBCC-C---EEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEE
T ss_pred EEEEEccccCCccE-E---EEEEEeeeccccceeeeeeCCccEEEEeccccCcEE
Confidence 56666544434432 1 1466676552 34444444433344455554454
No 6
>d1x9ya2 d.17.1.4 (A:41-211) Staphopain B, prodomain {Staphylococcus aureus [TaxId: 1280]}
Probab=12.88 E-value=1.2e+02 Score=25.89 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=45.9
Q ss_pred ecccccEEEecCCceeeeeccceeeeecccCCCCCceEEEecCceeeccceecceEEeeeCCCChH-H-----------H
Q psy7576 258 KESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESF-T-----------H 325 (481)
Q Consensus 258 kESNARIVRWSDGSlSL~IGsE~FDI~~~pL~~d~nhLyvrq~~~LQgqav~~~kLtfrPtSt~S~-T-----------H 325 (481)
++||+. -|+|+| +|.|-|+.-.-..|.||.|- +|+ .+-|.=.+|+-|...+-. + -
T Consensus 33 k~~~~~-----~~~Y~L---GepFKIYKfN~~~DgnYYyP----VLk-~g~i~YvvTiSPK~~~d~n~sk~~~nYsv~vS 99 (171)
T d1x9ya2 33 KQSNAK-----TGKYEL---GEAFKIYKFNGEEDNSYYYP----VIK-DGKIVYTLTLSPKNKDDLNKSKEDMNYSVKIS 99 (171)
T ss_dssp HHTTCC-----CCCEEE---CCCBCCEETTSCBCSSEEEE----EEE-TTEEEEEEEEEECSGGGGGSCTTTSCEEEEEE
T ss_pred HHhcCC-----CCceec---CCceEEEeeccccCCcEeee----Eec-CCcEEEEEEeCCCCCCchhhhhhcccceEeec
Confidence 466664 488888 69999998666667788764 243 334455688888443211 1 1
Q ss_pred HHHHHHHHhhcccccceEEee
Q psy7576 326 RKMTLSLADRSNKTTGIKILG 346 (481)
Q Consensus 326 rkLT~sVA~R~~Kt~kVKil~ 346 (481)
--|+..|.+-..|.++|-|++
T Consensus 100 ~Fisk~Lnqykdkn~~iTIlT 120 (171)
T d1x9ya2 100 NFIAKDLDQIKDKNSNITVLT 120 (171)
T ss_dssp CTTHHHHHHTSSSSCEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEE
Confidence 234555555545555666665
No 7
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=12.49 E-value=87 Score=22.07 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=16.7
Q ss_pred eEEEEEeccCCCCCceecccccEEEecCCceeee
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLH 275 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL~ 275 (481)
-+|.|.+. |..+..+.-..+..+++..+|.
T Consensus 32 p~v~W~~~----~~~i~~~~~~~~~~~~~~~~L~ 61 (93)
T d1wiua_ 32 PTATWTVG----DSGAALAPELLVDAKSSTTSIF 61 (93)
T ss_dssp CEEEEECS----SSSCBCSTTSEEEEETTEEEEE
T ss_pred CeEEEEee----eeeceeeeeeeecccccceeec
Confidence 37899873 3444444444455555555554
No 8
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}
Probab=10.77 E-value=1.2e+02 Score=21.53 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=16.2
Q ss_pred EEEEEeccCCCCCceecccccEEEe-cCCceeeeec
Q psy7576 243 TIRWRDTFNKDGDLVKESNARLVKW-SDGSLSLHLG 277 (481)
Q Consensus 243 TIRWR~~~d~~G~~vkESNARIVRW-SDGSlSL~IG 277 (481)
+|.|.++ |..+..+.-..+.. .+|..+|.|-
T Consensus 39 ~v~W~k~----~~~i~~~~~~~~~~~~~~~~~L~I~ 70 (102)
T d1fhga_ 39 EVMWFKD----DNPVKESRHFQIDYDEEGNCSLTIS 70 (102)
T ss_dssp EEEEEET----TEECCCSSSEEEEECTTCEEEEEES
T ss_pred eEEEEee----eccccceeeEeEEEecCceeeeEec
Confidence 7899873 44444333222333 3456666654
No 9
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.96 E-value=2.9e+02 Score=19.76 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=14.8
Q ss_pred eEEEEEeccCCCCCceecccccEEEecCCceeeeec
Q psy7576 242 NTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLG 277 (481)
Q Consensus 242 NTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL~IG 277 (481)
..|+|.+.. ..|+.|..|..+..-+
T Consensus 27 ~~I~W~~~~-----------~~i~~~~~~~~~~~~~ 51 (98)
T d1hnga1 27 DEVRWERGS-----------TLVAEFKRKMKPFLKS 51 (98)
T ss_dssp EEEEEEETT-----------EEEEEEETTSCCEESS
T ss_pred heeeeeccc-----------cceeEEccCCccccCC
Confidence 468998732 2466666666554443
No 10
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}
Probab=9.89 E-value=1e+02 Score=22.43 Aligned_cols=24 Identities=13% Similarity=0.279 Sum_probs=19.2
Q ss_pred cCCCCCceecccccEEEecCCcee
Q psy7576 250 FNKDGDLVKESNARLVKWSDGSLS 273 (481)
Q Consensus 250 ~d~~G~~vkESNARIVRWSDGSlS 273 (481)
...+|+.+.-..+.+.+|.||-++
T Consensus 90 ~~~tG~~~~~~~~~~~~~~dGkI~ 113 (130)
T d3ec9a1 90 YRRTGKSFECRVAHVWRVDAGKIV 113 (130)
T ss_dssp ETTTCCEEEEEEEEEEEEETTEEE
T ss_pred EeCCCCEEEEEEEEEEEEECCEEE
Confidence 345788888888999999999665
Done!