Your job contains 1 sequence.
>psy7576
TGEDKEEEEPVETRIDVLRPVPTCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGR
IEVAADQLQGQTEVVQDLEAARVVQGEDLDHHLEALVALLLKLNAEALFGDASDISTDDD
DDGKLQVVEEEGDGEGERRERDEDARSDASRRGSDREDDEDKENRTETGEDKEEEEPVET
RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLKV
ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG
TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI
KKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGDDDDDEGAISLSAIKNKYNAKKNP
AGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQDSDDEDEKSAASRSGSGKSGSDS
D
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7576
(481 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0019637 - symbol:Atu "Another transcription unit" ... 763 2.8e-80 2
ZFIN|ZDB-GENE-040426-2435 - symbol:leo1 "Leo1, Paf1/RNA p... 718 1.4e-74 2
UNIPROTKB|E1BV70 - symbol:LOC769405 "Uncharacterized prot... 702 5.3e-73 2
UNIPROTKB|Q8WVC0 - symbol:LEO1 "RNA polymerase-associated... 697 6.7e-73 2
UNIPROTKB|F1RZB7 - symbol:LEO1 "Uncharacterized protein" ... 697 6.7e-73 2
UNIPROTKB|Q5R4D6 - symbol:LEO1 "RNA polymerase-associated... 697 6.7e-73 2
MGI|MGI:2685031 - symbol:Leo1 "Leo1, Paf1/RNA polymerase ... 696 8.6e-73 2
RGD|1549772 - symbol:Leo1 "Leo1, Paf1/RNA polymerase II c... 696 8.6e-73 2
UNIPROTKB|Q641X2 - symbol:Leo1 "RNA polymerase-associated... 696 8.6e-73 2
UNIPROTKB|Q52KV5 - symbol:leo1 "RNA polymerase-associated... 696 2.0e-71 2
UNIPROTKB|A4FUW5 - symbol:LEO1 "LEO1 protein" species:991... 665 1.6e-69 2
WB|WBGene00007110 - symbol:B0035.11 species:6239 "Caenorh... 426 2.8e-42 2
TAIR|locus:2159466 - symbol:VIP4 "VERNALIZATION INDEPENDE... 234 2.6e-18 2
DICTYBASE|DDB_G0286051 - symbol:leo1 "RNA polymerase II c... 229 7.6e-18 2
SGD|S000005649 - symbol:LEO1 "Component of the Paf1 compl... 187 5.7e-12 1
CGD|CAL0002849 - symbol:orf19.7116 species:5476 "Candida ... 179 1.6e-11 1
POMBASE|SPBC13E7.08c - symbol:SPBC13E7.08c "RNA polymeras... 170 4.4e-10 1
>FB|FBgn0019637 [details] [associations]
symbol:Atu "Another transcription unit" species:7227
"Drosophila melanogaster" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
EMBL:AE014297 GO:GO:0035206 EMBL:U75467 EMBL:AY075403
RefSeq:NP_524240.1 UniGene:Dm.2485 MINT:MINT-1741247 STRING:Q94546
PaxDb:Q94546 EnsemblMetazoa:FBtr0078704 GeneID:40684
KEGG:dme:Dmel_CG1433 CTD:40684 FlyBase:FBgn0019637 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 HOGENOM:HOG000263903 InParanoid:Q94546
KO:K15177 OMA:NTIRWRE OrthoDB:EOG4J3V06 PhylomeDB:Q94546
GenomeRNAi:40684 NextBio:820046 Bgee:Q94546 GermOnline:CG1433
InterPro:IPR007149 Pfam:PF04004 Uniprot:Q94546
Length = 725
Score = 763 (273.6 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 160/280 (57%), Positives = 189/280 (67%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RIDVEIP+IS DLG+E HF+KLPNFLSV T PF GR R+KLKV
Sbjct: 379 RIDVEIPRISADLGKEQHFIKLPNFLSVVTHPFDPETYEDEIDEEETMDEEGRQRIKLKV 438
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
NTIRWR+ N GD+V+ESNAR V+WSDGS+SLHLG+EIFD Y+QPL GDHNHL++RQG
Sbjct: 439 SNTIRWREYMNNKGDMVRESNARFVRWSDGSMSLHLGNEIFDAYRQPLLGDHNHLFVRQG 498
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQ+VFRTKL+FRPHSTESFTH+KMT+SLADRS+KT+GIKIL QVG DP +R ++
Sbjct: 499 TGLQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSKTSGIKILTQVGKDPTTDRPTQL 558
Query: 361 KKEEEKLRQSLXXXXXXXXXXXX-GASSRLSAG----YLXXXXXXXXXAISLSAIKNKYN 415
++EE KLRQ++ GA L G Y AISLSAIKN+Y
Sbjct: 559 REEEAKLRQAMRNQHKSLPKKKKPGAGEPLIGGGTSSYQHDEGSDDENAISLSAIKNRY- 617
Query: 416 AKKNPAGASGAAPSRNIYSSDED-ASDLELR-TKKHDKPK 453
KK + IYSSDED SD E R +KK DK K
Sbjct: 618 -KKGSGAGQAEVKASTIYSSDEDEGSDFEARRSKKVDKAK 656
Score = 62 (26.9 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 5 KEEE-EPV-ETRIDVLRPVPTCQADLEPLGADQHRLEL 40
KE+E EP+ ETRIDV +P ADL G +QH ++L
Sbjct: 368 KEDEPEPLPETRIDV--EIPRISADL---GKEQHFIKL 400
>ZFIN|ZDB-GENE-040426-2435 [details] [associations]
symbol:leo1 "Leo1, Paf1/RNA polymerase II complex
component, homolog (S. cerevisiae)" species:7955 "Danio rerio"
[GO:0003674 "molecular_function" evidence=ND] [GO:0050936
"xanthophore differentiation" evidence=IMP] [GO:0014032 "neural
crest cell development" evidence=IMP] [GO:0007507 "heart
development" evidence=IMP] [GO:0048701 "embryonic cranial skeleton
morphogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0030318 "melanocyte differentiation"
evidence=IMP] [GO:0021782 "glial cell development" evidence=IMP]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IDA] [GO:0021529 "spinal cord oligodendrocyte cell
differentiation" evidence=IMP] ZFIN:ZDB-GENE-040426-2435
GO:GO:0007507 GO:GO:0045944 GO:GO:0006351 GO:GO:0014032
GO:GO:0048701 GO:GO:0030318 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0016593 GO:GO:0050936
GO:GO:0021782 EMBL:CR848839 EMBL:BC066443 IPI:IPI00508736
RefSeq:NP_996950.1 UniGene:Dr.79820 IntAct:Q6NYV9 STRING:Q6NYV9
PRIDE:Q6NYV9 Ensembl:ENSDART00000077694 GeneID:404599
KEGG:dre:404599 CTD:123169 HOGENOM:HOG000253934 HOVERGEN:HBG081913
InParanoid:Q6NYV9 OMA:RHEIDEE OrthoDB:EOG4HQDJC NextBio:20817668
Bgee:Q6NYV9 GO:GO:0021529 Uniprot:Q6NYV9
Length = 696
Score = 718 (257.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 155/280 (55%), Positives = 186/280 (66%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK+S DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 335 RIEVEIPKVSTDLGSDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 394
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ VKESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 395 ENTIRWRSRRDEEGNEVKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 454
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP++ R E I
Sbjct: 455 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRNEMI 514
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ L+AGYL +ISL+AIK+KY
Sbjct: 515 KKEEERLRASIRRESQQRRMREKQHQRGLNAGYLEPDRYDEDEEGEESISLAAIKSKYK- 573
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G G R IYSSD D E + ++ K KR+
Sbjct: 574 -----GGGGLREERARIYSSDSDEGSDEDKAQRLMKAKRL 608
Score = 53 (23.7 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 4 DKEEEEPV-ETRIDVLRPVPTCQADLEPLGADQHRLEL 40
D+ EEEP ETRI+V +P DL G+D + ++L
Sbjct: 324 DQPEEEPAPETRIEV--EIPKVSTDL---GSDLYFVKL 356
>UNIPROTKB|E1BV70 [details] [associations]
symbol:LOC769405 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001711 "endodermal cell fate commitment"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0010390 "histone
monoubiquitination" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0033523 "histone H2B ubiquitination" evidence=IEA] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] GO:GO:0005730 GO:GO:0045944
GO:GO:0006378 GeneTree:ENSGT00550000074952 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0045638 OMA:NNGTMDL
EMBL:AADN02045369 EMBL:AADN02045370 IPI:IPI00586576
RefSeq:XP_001232678.2 Ensembl:ENSGALT00000007481 GeneID:769405
KEGG:gga:769405 Uniprot:E1BV70
Length = 657
Score = 702 (252.2 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 152/280 (54%), Positives = 185/280 (66%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 348 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 407
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ ++ESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 408 ENTIRWRMRRDEEGNEIRESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 467
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP++ R E I
Sbjct: 468 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRTEMI 527
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL AISL+AIKN+Y
Sbjct: 528 KKEEERLRASIRRESQQRRMREKQHQRGLSANYLEPDRYEEEDEGDDAISLAAIKNRYKG 587
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G R IYSSD D E +T++ K K++
Sbjct: 588 --------GIREERARIYSSDSDEGSDEDKTQRLLKAKKL 619
Score = 54 (24.1 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
++++EEEP+ ETRI+V +P DL
Sbjct: 336 QEQQEEEPIPETRIEV--EIPKVNTDL 360
>UNIPROTKB|Q8WVC0 [details] [associations]
symbol:LEO1 "RNA polymerase-associated protein LEO1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IDA] [GO:0033523 "histone H2B ubiquitination"
evidence=IDA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IDA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IDA] [GO:0019827 "stem cell maintenance"
evidence=IDA] [GO:0001711 "endodermal cell fate commitment"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0031442 "positive regulation of mRNA 3'-end processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] GO:GO:0005730 GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 eggNOG:NOG130430
KO:K15177 InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968
GO:GO:0033523 GO:GO:0010390 GO:GO:0031442 GO:GO:0016593
GO:GO:0001711 GO:GO:0045638 CTD:123169 HOGENOM:HOG000253934
HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC EMBL:AY302186 EMBL:AK055762
EMBL:BC018147 IPI:IPI00103090 IPI:IPI00154162 RefSeq:NP_620147.1
UniGene:Hs.567662 ProteinModelPortal:Q8WVC0 DIP:DIP-37885N
IntAct:Q8WVC0 STRING:Q8WVC0 PhosphoSite:Q8WVC0 DMDM:74751545
PaxDb:Q8WVC0 PeptideAtlas:Q8WVC0 PRIDE:Q8WVC0
Ensembl:ENST00000299601 Ensembl:ENST00000315141 GeneID:123169
KEGG:hsa:123169 UCSC:uc002abo.3 UCSC:uc010bfd.3
GeneCards:GC15M052230 HGNC:HGNC:30401 HPA:HPA040741 HPA:HPA040941
MIM:610507 neXtProt:NX_Q8WVC0 PharmGKB:PA142671558
InParanoid:Q8WVC0 OMA:NNGTMDL PhylomeDB:Q8WVC0 ChiTaRS:LEO1
GenomeRNAi:123169 NextBio:81081 ArrayExpress:Q8WVC0 Bgee:Q8WVC0
CleanEx:HS_LEO1 Genevestigator:Q8WVC0 GermOnline:ENSG00000166477
Uniprot:Q8WVC0
Length = 666
Score = 697 (250.4 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 151/280 (53%), Positives = 183/280 (65%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 357 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 416
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 417 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 476
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP+ R E I
Sbjct: 477 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 536
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL +ISL+AIKN+Y
Sbjct: 537 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKG 596
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G R IYSSD D E + ++ K K++
Sbjct: 597 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 628
Score = 58 (25.5 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
+D++EEEP+ ETRI+V +P DL
Sbjct: 345 QDQQEEEPIPETRIEV--EIPKVNTDL 369
>UNIPROTKB|F1RZB7 [details] [associations]
symbol:LEO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0033523 "histone H2B ubiquitination" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0031442 "positive
regulation of mRNA 3'-end processing" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001711 "endodermal cell
fate commitment" evidence=IEA] GO:GO:0005730 GO:GO:0045944
GO:GO:0006378 GO:GO:0019827 GeneTree:ENSGT00550000074952 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0033523
GO:GO:0010390 GO:GO:0031442 GO:GO:0016593 GO:GO:0001711
GO:GO:0045638 CTD:123169 OMA:NNGTMDL EMBL:CU855739
RefSeq:XP_003121552.1 UniGene:Ssc.7240 Ensembl:ENSSSCT00000005108
GeneID:100518760 KEGG:ssc:100518760 Uniprot:F1RZB7
Length = 666
Score = 697 (250.4 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 151/280 (53%), Positives = 183/280 (65%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 357 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 416
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 417 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 476
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP+ R E I
Sbjct: 477 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 536
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL +ISL+AIKN+Y
Sbjct: 537 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKG 596
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G R IYSSD D E + ++ K K++
Sbjct: 597 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 628
Score = 58 (25.5 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
+D++EEEP+ ETRI+V +P DL
Sbjct: 345 QDQQEEEPIPETRIEV--EIPKVNTDL 369
>UNIPROTKB|Q5R4D6 [details] [associations]
symbol:LEO1 "RNA polymerase-associated protein LEO1"
species:9601 "Pongo abelii" [GO:0001711 "endodermal cell fate
commitment" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0016593 "Cdc73/Paf1 complex" evidence=ISS]
[GO:0019827 "stem cell maintenance" evidence=ISS] [GO:0031442
"positive regulation of mRNA 3'-end processing" evidence=ISS]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=ISS] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0031442
GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOVERGEN:HBG081913 EMBL:CR861315 RefSeq:NP_001127657.1
UniGene:Pab.18485 GeneID:100174739 KEGG:pon:100174739
InParanoid:Q5R4D6 Uniprot:Q5R4D6
Length = 666
Score = 697 (250.4 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 151/280 (53%), Positives = 183/280 (65%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 357 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDGEGRTRLKLKV 416
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 417 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 476
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP+ R E I
Sbjct: 477 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 536
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL +ISL+AIKN+Y
Sbjct: 537 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKG 596
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G R IYSSD D E + ++ K K++
Sbjct: 597 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 628
Score = 58 (25.5 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
+D++EEEP+ ETRI+V +P DL
Sbjct: 345 QDQQEEEPIPETRIEV--EIPKVNTDL 369
>MGI|MGI:2685031 [details] [associations]
symbol:Leo1 "Leo1, Paf1/RNA polymerase II complex component,
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0001711
"endodermal cell fate commitment" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0010390 "histone monoubiquitination" evidence=ISO] [GO:0016055
"Wnt receptor signaling pathway" evidence=IEA] [GO:0016593
"Cdc73/Paf1 complex" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO;IMP] [GO:0031442 "positive regulation of
mRNA 3'-end processing" evidence=ISO] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=ISO] [GO:0033523 "histone H2B ubiquitination"
evidence=ISO] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
MGI:MGI:2685031 GO:GO:0005730 GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0033523 GO:GO:0010390
GO:GO:0031442 GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOGENOM:HOG000253934 HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC
OMA:NNGTMDL EMBL:AC115880 EMBL:BC082540 EMBL:BC083358
IPI:IPI00474486 IPI:IPI00776281 RefSeq:NP_001034611.1
UniGene:Mm.41508 ProteinModelPortal:Q5XJE5 IntAct:Q5XJE5
STRING:Q5XJE5 PhosphoSite:Q5XJE5 PaxDb:Q5XJE5 PRIDE:Q5XJE5
Ensembl:ENSMUST00000048937 GeneID:235497 KEGG:mmu:235497
UCSC:uc009qsh.1 InParanoid:Q5XJE5 NextBio:382712 Bgee:Q5XJE5
Genevestigator:Q5XJE5 GermOnline:ENSMUSG00000042487 Uniprot:Q5XJE5
Length = 667
Score = 696 (250.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 150/280 (53%), Positives = 183/280 (65%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 358 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 417
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 418 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 477
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP+ R E I
Sbjct: 478 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 537
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL ++SL+AIKN+Y
Sbjct: 538 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESVSLAAIKNRYKG 597
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G R IYSSD D E + ++ K K++
Sbjct: 598 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 629
Score = 58 (25.5 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
+D++EEEP+ ETRI+V +P DL
Sbjct: 346 QDQQEEEPIPETRIEV--EIPKVNTDL 370
>RGD|1549772 [details] [associations]
symbol:Leo1 "Leo1, Paf1/RNA polymerase II complex component,
homolog (S. cerevisiae)" species:10116 "Rattus norvegicus"
[GO:0001711 "endodermal cell fate commitment" evidence=IEA;ISO;ISS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA;ISO;ISS] [GO:0010390 "histone monoubiquitination"
evidence=IEA;ISO] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA;ISO;ISS] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO;ISS] [GO:0031442 "positive regulation of mRNA
3'-end processing" evidence=IEA;ISO;ISS] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA;ISO;ISS] [GO:0033523 "histone H2B
ubiquitination" evidence=IEA;ISO] [GO:0045638 "negative regulation
of myeloid cell differentiation" evidence=IEA;ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA;ISO;ISS] RGD:1549772 GO:GO:0005730
GO:GO:0016055 GO:GO:0045944 GO:GO:0006378 GO:GO:0006351
GO:GO:0019827 eggNOG:NOG130430 GeneTree:ENSGT00550000074952
KO:K15177 InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968
GO:GO:0033523 GO:GO:0010390 GO:GO:0031442 GO:GO:0016593
GO:GO:0001711 GO:GO:0045638 CTD:123169 HOGENOM:HOG000253934
HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC OMA:NNGTMDL EMBL:BC082098
IPI:IPI00471640 RefSeq:NP_001005548.1 UniGene:Rn.43195
STRING:Q641X2 PhosphoSite:Q641X2 PRIDE:Q641X2
Ensembl:ENSRNOT00000013512 GeneID:300837 KEGG:rno:300837
UCSC:RGD:1549772 InParanoid:Q641X2 NextBio:647616
ArrayExpress:Q641X2 Genevestigator:Q641X2
GermOnline:ENSRNOG00000010116 Uniprot:Q641X2
Length = 678
Score = 696 (250.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 150/280 (53%), Positives = 183/280 (65%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 369 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 428
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 429 ENTIRWRMRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 488
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP+ R E I
Sbjct: 489 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 548
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL ++SL+AIKN+Y
Sbjct: 549 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESVSLAAIKNRYKG 608
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G R IYSSD D E + ++ K K++
Sbjct: 609 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 640
Score = 58 (25.5 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
+D++EEEP+ ETRI+V +P DL
Sbjct: 357 QDQQEEEPIPETRIEV--EIPKVNTDL 381
>UNIPROTKB|Q641X2 [details] [associations]
symbol:Leo1 "RNA polymerase-associated protein LEO1"
species:10116 "Rattus norvegicus" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0033523 "histone H2B ubiquitination"
evidence=IEA] RGD:1549772 GO:GO:0005730 GO:GO:0016055 GO:GO:0045944
GO:GO:0006378 GO:GO:0006351 GO:GO:0019827 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0033523 GO:GO:0010390
GO:GO:0031442 GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOGENOM:HOG000253934 HOVERGEN:HBG081913 OrthoDB:EOG4HQDJC
OMA:NNGTMDL EMBL:BC082098 IPI:IPI00471640 RefSeq:NP_001005548.1
UniGene:Rn.43195 STRING:Q641X2 PhosphoSite:Q641X2 PRIDE:Q641X2
Ensembl:ENSRNOT00000013512 GeneID:300837 KEGG:rno:300837
UCSC:RGD:1549772 InParanoid:Q641X2 NextBio:647616
ArrayExpress:Q641X2 Genevestigator:Q641X2
GermOnline:ENSRNOG00000010116 Uniprot:Q641X2
Length = 678
Score = 696 (250.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 150/280 (53%), Positives = 183/280 (65%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 369 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 428
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 429 ENTIRWRMRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 488
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP+ R E I
Sbjct: 489 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 548
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL ++SL+AIKN+Y
Sbjct: 549 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESVSLAAIKNRYKG 608
Query: 417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
G R IYSSD D E + ++ K K++
Sbjct: 609 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 640
Score = 58 (25.5 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
+D++EEEP+ ETRI+V +P DL
Sbjct: 357 QDQQEEEPIPETRIEV--EIPKVNTDL 381
>UNIPROTKB|Q52KV5 [details] [associations]
symbol:leo1 "RNA polymerase-associated protein LEO1"
species:8355 "Xenopus laevis" [GO:0016593 "Cdc73/Paf1 complex"
evidence=ISS] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] GO:GO:0045944 GO:GO:0006351
KO:K15177 InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968
GO:GO:0016593 CTD:123169 HOVERGEN:HBG081913 EMBL:BC094174
RefSeq:NP_001085280.1 UniGene:Xl.52848 GeneID:443607
KEGG:xla:443607 Xenbase:XB-GENE-5828312 Uniprot:Q52KV5
Length = 703
Score = 696 (250.1 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 147/272 (54%), Positives = 181/272 (66%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 388 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 447
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ V++SNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 448 ENTIRWRTRKDEEGNDVRDSNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 507
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP++ R E I
Sbjct: 508 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRSEMI 567
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
KKEEE+LR S+ LSA YL +ISL+AIKN+Y
Sbjct: 568 KKEEERLRASIRRESQQRRMREKQHQRGLSANYLEPDRYDDEEEGDESISLAAIKNRYKG 627
Query: 417 KKNPAGASGAAPSRNIYSSDEDASDLELRTKK 448
+ ++ S SDED + L+ KK
Sbjct: 628 GREERARIYSSDSDE--GSDEDKAQRLLKAKK 657
Score = 45 (20.9 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 3 EDKEEEEPVETRIDVLRPVPTCQADL 28
+D+ EE ETRI+V +P DL
Sbjct: 377 QDQPEETAPETRIEV--EIPKVNTDL 400
>UNIPROTKB|A4FUW5 [details] [associations]
symbol:LEO1 "LEO1 protein" species:9913 "Bos taurus"
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045638 "negative
regulation of myeloid cell differentiation" evidence=IEA]
[GO:0033523 "histone H2B ubiquitination" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0031442 "positive
regulation of mRNA 3'-end processing" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0016593 "Cdc73/Paf1
complex" evidence=IEA] [GO:0010390 "histone monoubiquitination"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0001711 "endodermal cell
fate commitment" evidence=IEA] GO:GO:0005730 GO:GO:0045944
GO:GO:0006378 GO:GO:0019827 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 GO:GO:0032968 GO:GO:0033523 GO:GO:0010390
GO:GO:0031442 GO:GO:0016593 GO:GO:0001711 GO:GO:0045638 CTD:123169
HOGENOM:HOG000253934 HOVERGEN:HBG081913 OMA:NNGTMDL
EMBL:DAAA02029002 EMBL:BC120399 IPI:IPI00688485
RefSeq:NP_001076073.1 UniGene:Bt.18876 STRING:A4FUW5
Ensembl:ENSBTAT00000018400 GeneID:507524 KEGG:bta:507524
NextBio:20868102 Uniprot:A4FUW5
Length = 584
Score = 665 (239.2 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 132/214 (61%), Positives = 156/214 (72%)
Query: 181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
RI+VEIPK++ DLG +++FVKLPNFLSVE RPF GR RLKLKV
Sbjct: 359 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 418
Query: 241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
ENTIRWR +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct: 419 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 478
Query: 301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT I+IL G DP+ R E I
Sbjct: 479 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 538
Query: 361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYL 394
KKEEE+LR S+ LSA YL
Sbjct: 539 KKEEERLRASIRRESQQRRMREKQHQRGLSASYL 572
Score = 58 (25.5 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 3 EDKEEEEPV-ETRIDVLRPVPTCQADL 28
+D++EEEP+ ETRI+V +P DL
Sbjct: 347 QDQQEEEPIPETRIEV--EIPKVNTDL 371
>WB|WBGene00007110 [details] [associations]
symbol:B0035.11 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0040018 GO:GO:0040035 eggNOG:NOG130430
GeneTree:ENSGT00550000074952 KO:K15177 InterPro:IPR007149
Pfam:PF04004 EMBL:Z73102 OMA:RAHIRRT PIR:T18651 RefSeq:NP_502135.1
ProteinModelPortal:Q17431 STRING:Q17431 PaxDb:Q17431
EnsemblMetazoa:B0035.11.1 EnsemblMetazoa:B0035.11.2 GeneID:178052
KEGG:cel:CELE_B0035.11 UCSC:B0035.11 CTD:178052 WormBase:B0035.11
HOGENOM:HOG000017965 InParanoid:Q17431 NextBio:899518
Uniprot:Q17431
Length = 430
Score = 426 (155.0 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 83/173 (47%), Positives = 117/173 (67%)
Query: 198 HFVKLPNFLSVETRPFX-XXXXXXXXXXXXXXXXXGRARLKLKVENTIRWRDTFNKDGDL 256
HFV++PNFLSV T PF GR RLKL+VENT+RWR +++G
Sbjct: 167 HFVRMPNFLSVATHPFDPQHYEEDEDDEQAKLDDEGRTRLKLRVENTLRWRVRKDENGKE 226
Query: 257 VKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDH-NHLYIRQGTGLQGQAVFRTKLSF 315
++ESNA++VKW DG++SL+LG+EIF+V PL ++ HLY++Q T + QAV +++F
Sbjct: 227 IRESNAKIVKWDDGTMSLYLGNEIFEVSLVPLNSNNLPHLYVKQPTLMSAQAVLTHRMTF 286
Query: 316 RPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLR 368
RPHST+S THRK+TL++ADRS K +K++ VG +P+ R E +KEEE LR
Sbjct: 287 RPHSTDSQTHRKVTLNMADRSRKNAQVKVMDDVGQNPEITRRENARKEEESLR 339
Score = 38 (18.4 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 433 YSSDEDASDLELRTKKHDKP 452
YS DED + KK + P
Sbjct: 363 YSDDEDMPTSSRKGKKKEAP 382
>TAIR|locus:2159466 [details] [associations]
symbol:VIP4 "VERNALIZATION INDEPENDENCE 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IMP] [GO:0010048 "vernalization response"
evidence=RCA;IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0008284
"positive regulation of cell proliferation" evidence=RCA]
GO:GO:0005829 EMBL:CP002688 EMBL:AB006696 GO:GO:0009910
GO:GO:0010048 KO:K15177 InterPro:IPR007149 Pfam:PF04004 OMA:RHEIDEE
EMBL:BT002058 EMBL:BT008386 IPI:IPI00543146 RefSeq:NP_851237.1
UniGene:At.29120 IntAct:Q9FNQ0 STRING:Q9FNQ0 PRIDE:Q9FNQ0
EnsemblPlants:AT5G61150.1 GeneID:836236 KEGG:ath:AT5G61150
TAIR:At5g61150 InParanoid:Q9FNQ0 PhylomeDB:Q9FNQ0
ProtClustDB:CLSN2680583 ArrayExpress:Q9FNQ0 Genevestigator:Q9FNQ0
Uniprot:Q9FNQ0
Length = 625
Score = 234 (87.4 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 54/176 (30%), Positives = 89/176 (50%)
Query: 196 EMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKVENTIRWRDTFNKDGD 255
+M+ +K+ N + ++ +PF + R++L N +R R ++DG
Sbjct: 260 KMNMIKVSNIMGIDPKPFDAKTFVEEDTFMTDEPGA-KNRIRLD-NNIVRHRFVKSRDGK 317
Query: 256 LVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTG-LQGQAVFRTKLS 314
ESNAR V+WSDGSL L +G+E+ ++ +Q + D NHL+I+ G LQ Q K+
Sbjct: 318 TYSESNARFVRWSDGSLQLLIGNEVLNITEQDAKEDQNHLFIKHEKGILQSQGRILKKMR 377
Query: 315 FRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQS 370
F P S S +HR +T + R K +K DP+ + ++ K E + L+ S
Sbjct: 378 FTPSSLTSNSHRLLTAIVESRQKKAFKVKNC-VTDIDPEREKEKREKAESQNLKAS 432
Score = 42 (19.8 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 4 DKEEEEPVETRIDVLRPVPTCQAD-----LEPLGADQHRLELTEVGQEHLKPIGVLQDHL 58
D EEE +E+ + R P +D +EP G + +E+ G+ + G
Sbjct: 17 DNSEEEEIESEHECNRRQPNYASDEAEGGVEPEGEGEAEVEVH--GEAEAESDG----EQ 70
Query: 59 GRIEVAADQLQGQTE 73
G +E+ + +G+ E
Sbjct: 71 GDVELDPGESEGERE 85
>DICTYBASE|DDB_G0286051 [details] [associations]
symbol:leo1 "RNA polymerase II complex component"
species:44689 "Dictyostelium discoideum" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] dictyBase:DDB_G0286051 GO:GO:0005634
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0006351
EMBL:AAFI02000085 eggNOG:NOG130430 KO:K15177 InterPro:IPR007149
Pfam:PF04004 OMA:RHEIDEE RefSeq:XP_637916.1 STRING:Q54MB8
EnsemblProtists:DDB0267056 GeneID:8625427 KEGG:ddi:DDB_G0286051
Uniprot:Q54MB8
Length = 487
Score = 229 (85.7 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 58/197 (29%), Positives = 100/197 (50%)
Query: 200 VKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKVENTIRWRDTFNKDGDLVKE 259
+KL N L ++ +PF G + K VE+ IRWR + +G KE
Sbjct: 185 LKLLNILGIQPKPFDPITFEDEEAMN------GDEKSKFNVESVIRWRWGLDLNGRPAKE 238
Query: 260 SNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHS 319
SN RLV WSDGS L++G+E+ ++ +QPLQ + ++Y Q ++ + ++LS RP +
Sbjct: 239 SNTRLVTWSDGSSHLYIGNEVLEIKEQPLQNEQFYVYSSQDGFIECEGKIDSRLSIRPTN 298
Query: 320 TESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLXXXXXXXX 379
+S H++++ ++A R+ K + IK + DP+ + ++ K+ + LR+
Sbjct: 299 IKSKVHQRLSENVAKRTVKVSKIKSI-HTTLDPEKEKEKREKELLDALREKKKQKDDSYR 357
Query: 380 --XXXXGASSRLSAGYL 394
G S L+A YL
Sbjct: 358 PNRGRGGKSGSLTASYL 374
Score = 41 (19.5 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 2 GEDKEEEEP 10
GE++EEEEP
Sbjct: 151 GEEEEEEEP 159
>SGD|S000005649 [details] [associations]
symbol:LEO1 "Component of the Paf1 complex" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IPI] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI] [GO:0001076 "RNA polymerase
II transcription factor binding transcription factor activity"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IMP] [GO:0080182 "histone H3-K4
trimethylation" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IGI] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IDA] [GO:2001173 "regulation of histone H2B
conserved C-terminal lysine ubiquitination" evidence=IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] SGD:S000005649 EMBL:BK006948 GO:GO:0003723
GO:GO:0006368 EMBL:X90518 EMBL:X94335 GO:GO:0001076
eggNOG:NOG130430 GeneTree:ENSGT00550000074952 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0032968 GO:GO:0080182
GO:GO:0016593 GO:GO:2001209 GO:GO:2001173 GO:GO:0090262 EMBL:X77135
EMBL:Z75031 EMBL:M94916 PIR:S45363 RefSeq:NP_014766.1
ProteinModelPortal:P38439 DIP:DIP-4143N IntAct:P38439
MINT:MINT-494366 STRING:P38439 PaxDb:P38439 PeptideAtlas:P38439
EnsemblFungi:YOR123C GeneID:854290 KEGG:sce:YOR123C CYGD:YOR123c
HOGENOM:HOG000000787 OMA:MVGVEKR OrthoDB:EOG4N07Q6 NextBio:976275
Genevestigator:P38439 GermOnline:YOR123C Uniprot:P38439
Length = 464
Score = 187 (70.9 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 55/183 (30%), Positives = 90/183 (49%)
Query: 196 EMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARL--KLKVENTIRWRDTFNKD 253
E+ + ++PNFL+++ PF +L +L ENT+RWR + +KD
Sbjct: 167 EIFYARIPNFLTIDPIPFDPPSFEAKVNERASNSASREDQLDDRLIDENTVRWRYSRDKD 226
Query: 254 GDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQP-----LQGDHNHLYIRQGTGLQGQAV 308
+ KESN ++V+WSDG+ SL +G E D+ L H+ + Q +G +
Sbjct: 227 QHVFKESNTQIVQWSDGTYSLKVGEECTDILVNDTSNTFLTVSHDQQELIQC--YEGGEI 284
Query: 309 FRTKLSFRPHSTESFTHRKMTLSLA---DRSNKTTGIKILGQVGYDPDANRYEKIKKEEE 365
+T L F P ST S H+K++ ++ R +K G I V DP+ + E +K+ +
Sbjct: 285 KKT-LMFIPTSTNSKIHQKLSKAVIRRNQRQSKGPGTYI---VSMDPEVEKKELERKQSQ 340
Query: 366 KLR 368
LR
Sbjct: 341 ILR 343
>CGD|CAL0002849 [details] [associations]
symbol:orf19.7116 species:5476 "Candida albicans" [GO:0003723
"RNA binding" evidence=IEA] [GO:0001076 "RNA polymerase II
transcription factor binding transcription factor activity"
evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0090262 "regulation of transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0080182 "histone
H3-K4 trimethylation" evidence=IEA] [GO:2001209 "positive
regulation of transcription elongation from RNA polymerase I
promoter" evidence=IEA] [GO:2001173 "regulation of histone H2B
conserved C-terminal lysine ubiquitination" evidence=IEA]
CGD:CAL0002849 EMBL:AACQ01000024 eggNOG:NOG130430 KO:K15177
InterPro:IPR007149 Pfam:PF04004 RefSeq:XP_720406.1
RefSeq:XP_888641.1 STRING:Q5AFF1 GeneID:3638011 GeneID:3704108
KEGG:cal:CaO19.7116 KEGG:cal:CaO19_7116 Uniprot:Q5AFF1
Length = 317
Score = 179 (68.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 56/203 (27%), Positives = 99/203 (48%)
Query: 182 IDVEIPK--ISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXX----------XXXXX 229
+D+ +P+ + + +++ +K P+FL++E PF
Sbjct: 19 VDLSLPRHAVVSVMEKDVRLLKTPDFLNIEAHPFDPSSFKEQIESNNKVRRERGLTAKEI 78
Query: 230 XXGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQ 289
+ KL ENTIRWR + ++VK+SNA V+WSDGS+SL +G+E++DV + P+
Sbjct: 79 HNEQMTEKLLNENTIRWRYHNAGNDEIVKQSNAHFVEWSDGSVSLKVGNEVYDVRELPMF 138
Query: 290 GDHNHLYIRQGTG-LQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQV 348
DH + Q LQ ++ ++ P S+ +HRK+ + N T KIL +
Sbjct: 139 -DHLLVKSHQAAEVLQADSILSKSINLLPASS---SHRKILVK-----NITKKEKILNTI 189
Query: 349 GYDPDANRYEKIKKEEEKLRQSL 371
D + EK + +E +R+++
Sbjct: 190 ---TDVDPLEKQRLADEDVRKAM 209
>POMBASE|SPBC13E7.08c [details] [associations]
symbol:SPBC13E7.08c "RNA polymerase II associated Paf1
complex (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=ISO] [GO:0016593 "Cdc73/Paf1
complex" evidence=ISO] PomBase:SPBC13E7.08c EMBL:CU329671
GO:GO:0003723 GO:GO:0006368 eggNOG:NOG130430 KO:K15177
InterPro:IPR007149 Pfam:PF04004 GO:GO:0016593 OrthoDB:EOG4N07Q6
RefSeq:NP_596263.1 STRING:Q9P6R2 PRIDE:Q9P6R2
EnsemblFungi:SPBC13E7.08c.1 GeneID:2539726 KEGG:spo:SPBC13E7.08c
OMA:IRWRYHN NextBio:20800877 Uniprot:Q9P6R2
Length = 429
Score = 170 (64.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 53/199 (26%), Positives = 93/199 (46%)
Query: 182 IDVEIP--KISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGR---ARL 236
++V +P K ++ +PNFLSVE P+ R+
Sbjct: 71 LEVAVPNFKSPASASNDVFHAHIPNFLSVEQTPYDPEQYAAEAEADAALLEHDAHWGQRI 130
Query: 237 KLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFD----VYKQP--LQG 290
K KV+NT+RWR G +SNA++V+WSDGS SL +G++I+D + QP +
Sbjct: 131 KHKVDNTVRWR--LGPSGSY--QSNAQIVQWSDGSYSLRIGNDIYDTQNKLISQPTFVTA 186
Query: 291 DHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKM-TLSLADRSNKTTGIKILGQVG 349
H ++ L+ Q F++ +F P + + T K+ ++ L + ++ + +
Sbjct: 187 SHEAQHL-----LRVQTSFKSSFTFLPSAINTATRSKLPSMRLTTVQVPSRSVQEI-IIE 240
Query: 350 YDPDANRYEKIKKEEEKLR 368
DP+ + + K EEE+ R
Sbjct: 241 KDPELLKRQAEKYEEERSR 259
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 481 334 0.00091 116 3 11 23 0.45 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 603 (64 KB)
Total size of DFA: 207 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 25.07u 0.09s 25.16t Elapsed: 00:00:18
Total cpu time: 25.07u 0.09s 25.16t Elapsed: 00:00:20
Start: Thu Aug 15 12:36:06 2013 End: Thu Aug 15 12:36:26 2013