Query psy7578
Match_columns 280
No_of_seqs 295 out of 1206
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 22:01:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gzk_A Sex-determining region 99.9 1.7E-23 5.9E-28 176.8 4.7 123 13-140 29-156 (159)
2 2eqz_A High mobility group pro 99.9 3E-22 1E-26 154.0 10.9 74 67-140 10-85 (86)
3 1hry_A Human SRY; DNA, DNA-bin 99.9 2.2E-22 7.6E-27 150.7 9.1 76 69-144 1-76 (76)
4 1j46_A SRY, sex-determining re 99.9 6.3E-22 2.1E-26 151.8 11.6 79 70-148 2-80 (85)
5 1gt0_D Transcription factor SO 99.9 6E-22 2.1E-26 149.8 10.8 77 71-147 1-77 (80)
6 3u2b_C Transcription factor SO 99.9 4.2E-22 1.4E-26 150.0 9.9 77 71-147 1-77 (79)
7 2co9_A Thymus high mobility gr 99.9 5.1E-22 1.8E-26 157.6 10.8 75 66-140 11-85 (102)
8 3f27_D Transcription factor SO 99.9 4.6E-22 1.6E-26 151.3 9.9 79 69-147 3-81 (83)
9 2e6o_A HMG box-containing prot 99.9 5.2E-22 1.8E-26 153.0 10.3 75 67-141 12-86 (87)
10 1hme_A High mobility group pro 99.9 5.6E-22 1.9E-26 148.8 9.7 73 68-140 2-74 (77)
11 2yrq_A High mobility group pro 99.9 4.4E-23 1.5E-27 176.9 4.0 122 14-140 43-169 (173)
12 4euw_A Transcription factor SO 99.9 7.3E-22 2.5E-26 157.9 10.3 83 65-147 22-104 (106)
13 1wz6_A HMG-box transcription f 99.9 3.3E-22 1.1E-26 152.1 7.8 79 68-146 3-81 (82)
14 1k99_A Upstream binding factor 99.9 5.2E-22 1.8E-26 157.0 9.1 75 66-140 4-78 (99)
15 1wgf_A Upstream binding factor 99.9 2.3E-22 7.8E-27 156.1 6.1 76 65-140 13-88 (90)
16 2cs1_A PMS1 protein homolog 1; 99.9 1.3E-21 4.4E-26 152.3 10.3 76 68-143 3-78 (92)
17 2crj_A SWI/SNF-related matrix- 99.9 1.1E-21 3.9E-26 152.6 9.8 74 68-141 3-76 (92)
18 1i11_A Transcription factor SO 99.9 1.2E-21 4E-26 148.8 8.1 78 70-147 2-79 (81)
19 1aab_A High mobility group pro 99.8 1.3E-21 4.4E-26 149.2 7.1 73 68-140 3-77 (83)
20 1ckt_A High mobility group 1 p 99.8 3.5E-21 1.2E-25 142.2 9.0 69 72-140 1-71 (71)
21 2lef_A LEF-1 HMG, protein (lym 99.8 6.7E-21 2.3E-25 146.2 10.8 76 71-146 1-76 (86)
22 4a3n_A Transcription factor SO 99.8 2.9E-21 9.8E-26 142.3 7.2 70 71-140 1-70 (71)
23 1wxl_A Single-strand recogniti 99.8 5.7E-21 2E-25 142.4 8.5 69 70-140 1-69 (73)
24 3nm9_A HMG-D, high mobility gr 99.8 6.1E-21 2.1E-25 142.3 8.4 68 71-140 2-69 (73)
25 1cg7_A Protein (NON histone pr 99.8 1.6E-21 5.6E-26 152.1 3.9 76 65-140 13-88 (93)
26 2lhj_A High mobility group pro 99.8 1.4E-21 4.8E-26 153.5 2.6 76 65-140 15-92 (97)
27 1l8y_A Upstream binding factor 99.8 5.3E-20 1.8E-24 144.3 9.3 69 71-140 3-71 (91)
28 3fgh_A Transcription factor A, 99.8 5.8E-20 2E-24 134.7 8.1 66 71-140 1-66 (67)
29 2yrq_A High mobility group pro 99.8 4.8E-19 1.6E-23 151.7 12.5 76 67-142 10-87 (173)
30 1v64_A Nucleolar transcription 99.8 3E-19 1E-23 143.5 8.3 71 66-140 10-81 (108)
31 2d7l_A WD repeat and HMG-box D 99.8 2E-19 6.7E-24 137.9 6.7 62 69-130 2-64 (81)
32 2cto_A Novel protein; high mob 99.8 1.7E-19 5.7E-24 141.9 5.4 70 68-139 6-78 (93)
33 1v63_A Nucleolar transcription 99.8 1.3E-18 4.4E-23 138.1 9.1 71 68-140 4-74 (101)
34 2yuk_A Myeloid/lymphoid or mix 99.8 5.8E-20 2E-24 143.9 1.1 68 66-137 16-85 (90)
35 3tq6_A Transcription factor A, 99.8 6.5E-21 2.2E-25 169.6 -6.5 123 14-140 35-178 (214)
36 3tmm_A Transcription factor A, 99.8 5.5E-21 1.9E-25 172.5 -7.1 123 14-140 67-210 (238)
37 2gzk_A Sex-determining region 99.7 2.2E-17 7.4E-22 139.3 11.0 76 70-145 2-77 (159)
38 3tmm_A Transcription factor A, 99.7 6.3E-18 2.2E-22 152.5 7.4 75 66-140 35-109 (238)
39 3tq6_A Transcription factor A, 99.7 1.1E-17 3.9E-22 148.7 7.3 72 69-140 6-77 (214)
40 2qgu_A Probable signal peptide 69.4 8.4 0.00029 33.3 6.1 47 95-141 69-117 (211)
41 2d7l_A WD repeat and HMG-box D 66.8 0.29 9.9E-06 36.5 -3.4 32 15-46 33-66 (81)
42 1l8y_A Upstream binding factor 58.2 0.31 1.1E-05 37.6 -4.7 38 8-45 23-62 (91)
43 2lhj_A High mobility group pro 39.2 5 0.00017 30.2 -0.6 30 14-43 50-81 (97)
44 1mzw_B U4/U6 snRNP 60KDA prote 32.2 7.1 0.00024 24.2 -0.6 19 202-220 1-19 (31)
45 2yua_A Williams-beuren syndrom 31.4 70 0.0024 23.8 4.8 41 84-124 35-80 (99)
46 1hdj_A Human HSP40, HDJ-1; mol 25.8 1.3E+02 0.0043 21.0 5.2 37 85-121 22-62 (77)
47 2o37_A Protein SIS1; HSP40, J- 24.3 1E+02 0.0035 22.5 4.6 41 84-124 26-68 (92)
48 2och_A Hypothetical protein DN 22.4 94 0.0032 21.5 3.9 38 84-121 26-65 (73)
49 2dk4_A PRE-mRNA-splicing facto 20.8 22 0.00076 26.4 0.2 25 196-220 25-49 (76)
50 2dn9_A DNAJ homolog subfamily 20.5 93 0.0032 21.8 3.5 37 84-120 25-66 (79)
No 1
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.88 E-value=1.7e-23 Score=176.82 Aligned_cols=123 Identities=17% Similarity=0.295 Sum_probs=103.2
Q ss_pred cccccccch--hhhhhhhccCCCCCCccccccCCcc---cccccCCCCcccccccccccccCCCCCCCCCChHHHHHHHH
Q psy7578 13 EVNISDISD--SELYNSAQAVGSGADEEFGEADSSL---DAESIGSGDLADNLLIDEDDLSQESIEKARFTAYMLWAKQI 87 (280)
Q Consensus 13 ~v~~se~sk--se~~~t~s~~~~g~~e~~~~a~s~~---~~~s~g~~k~~kk~~~k~~~~~d~~~PKRP~sAY~LF~ke~ 87 (280)
.++|+|||+ ++.|++++..++...++.+..+... +...+...... +.+..+|+++||||+||||+||+++
T Consensus 29 ~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~~-----~kk~~kdp~~pKrp~say~lf~~~~ 103 (159)
T 2gzk_A 29 RMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKGE-----TKKKFKDPNAPKRPPSAFFLFCSEY 103 (159)
T ss_dssp SCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCCC-----CGGGSCCTTCCCCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccccccc-----ccccccccccccccccccchhhHhh
Confidence 367899999 9999999998888888877655432 22233222111 1224578999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 88 RQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 88 R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
|.+|+.+||+++++||+++||++|++|+++||++|.++|++++++|+++|.+|
T Consensus 104 r~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y 156 (159)
T 2gzk_A 104 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 156 (159)
T ss_dssp HHHHHHHCSCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887
No 2
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=153.95 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=71.2
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 67 LSQESIEKARFTAYMLWAKQIRQKLIKSNPEMD--FSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 67 ~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls--~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
.+|+++||||+||||+|++++|.+++.+||+++ |.||+++||++|++|+++||++|+++|++++++|+++|..|
T Consensus 10 ~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 85 (86)
T 2eqz_A 10 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDY 85 (86)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999999987 69999999999999999999999999999999999999876
No 3
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.87 E-value=2.2e-22 Score=150.67 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=70.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy7578 69 QESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQK 144 (280)
Q Consensus 69 d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p 144 (280)
|+++||||+||||+|++++|.+++.+||++++.||+++||++|++|+++||++|.++|++++++|.+++.+|...|
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P 76 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP 76 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCCCC-
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCc
Confidence 5889999999999999999999999999999999999999999999999999999999999999999999986543
No 4
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.87 E-value=6.3e-22 Score=151.84 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=76.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q psy7578 70 ESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKTKST 148 (280)
Q Consensus 70 ~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~Kk~ 148 (280)
+++||||+||||+|++++|.+|+.+||++++.||+++||++|++|+++||++|.++|++++++|.+++.+|...|+++.
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~prr~~ 80 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRPRRKA 80 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCCC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988888753
No 5
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.87 E-value=6e-22 Score=149.85 Aligned_cols=77 Identities=27% Similarity=0.463 Sum_probs=74.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCc
Q psy7578 71 SIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKTKS 147 (280)
Q Consensus 71 ~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~Kk 147 (280)
++||||+||||+|++++|.+++.+||++++.||+++||++|++||++||++|.++|++++++|.++|.+|...|+++
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~r~ 77 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRK 77 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCcccccCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998888874
No 6
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=4.2e-22 Score=150.02 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=74.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCc
Q psy7578 71 SIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKTKS 147 (280)
Q Consensus 71 ~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~Kk 147 (280)
++||||+||||||++++|.+++.+||++++.||+++||++|++|+++||++|.++|++++++|.+++.+|...|+++
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yky~Prk~ 77 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYKYRPRKK 77 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999998888874
No 7
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=5.1e-22 Score=157.56 Aligned_cols=75 Identities=17% Similarity=0.376 Sum_probs=73.0
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 66 DLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 66 ~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+.+|+++||||+||||||++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|.++|.+|
T Consensus 11 ~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y 85 (102)
T 2co9_A 11 KKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAY 85 (102)
T ss_dssp SCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.87 E-value=4.6e-22 Score=151.26 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=72.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCc
Q psy7578 69 QESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKTKS 147 (280)
Q Consensus 69 d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~Kk 147 (280)
.+++||||+||||||++++|.+++.+||++++.||+++||++|++|+++||++|.++|++++++|.+++.+|...|+++
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yky~P~~k 81 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRR 81 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCeeCCccC
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999998888874
No 9
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=5.2e-22 Score=153.03 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=72.1
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCC
Q psy7578 67 LSQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAP 141 (280)
Q Consensus 67 ~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~ 141 (280)
.+|+++||||+||||||++++|.+++.+||++++.||+++||++|++|+++||++|+++|++++++|.+++.+|.
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999988773
No 10
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.87 E-value=5.6e-22 Score=148.81 Aligned_cols=73 Identities=25% Similarity=0.536 Sum_probs=71.7
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 68 SQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 68 ~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+|+++||||+||||+|++++|.+++.+||++++.||+++||++|++||++||++|.++|++++++|.++|..|
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 74 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 74 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999988
No 11
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.4e-23 Score=176.90 Aligned_cols=122 Identities=24% Similarity=0.437 Sum_probs=103.0
Q ss_pred ccccccch--hhhhhhhccCCCCCCccccccCCcc---cccccCCCCcccccccccccccCCCCCCCCCChHHHHHHHHH
Q psy7578 14 VNISDISD--SELYNSAQAVGSGADEEFGEADSSL---DAESIGSGDLADNLLIDEDDLSQESIEKARFTAYMLWAKQIR 88 (280)
Q Consensus 14 v~~se~sk--se~~~t~s~~~~g~~e~~~~a~s~~---~~~s~g~~k~~kk~~~k~~~~~d~~~PKRP~sAY~LF~ke~R 88 (280)
++|+||++ ++.|++++..++....+.+..+... +...+...... +++..+|+++||||+||||+|++++|
T Consensus 43 ~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~~~-----~kk~~kdp~~pKrP~saf~lf~~~~r 117 (173)
T 2yrq_A 43 VNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE-----TKKKFKDPNAPKRPPSAFFLFCSEYR 117 (173)
T ss_dssp CCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCCCCCC-----SSCSCCCSSSCCCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh-----hcccccCCccccCcccHHHHHHHHHH
Confidence 57899999 9999999998888888877665432 33333222211 12234689999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 89 QKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 89 ~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
.+++.+||++++.||+++||++|++|+++||++|.++|++++++|+++|..|
T Consensus 118 ~~~~~~~p~~~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y 169 (173)
T 2yrq_A 118 PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAY 169 (173)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987
No 12
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.86 E-value=7.3e-22 Score=157.95 Aligned_cols=83 Identities=25% Similarity=0.445 Sum_probs=71.4
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy7578 65 DDLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQK 144 (280)
Q Consensus 65 ~~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p 144 (280)
...+++++||||+||||||++++|++++.+||++++.||+++||++|++|+++||++|+++|++++++|++++..|...|
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky~P 101 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQP 101 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC--
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCcCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCc
Q psy7578 145 TKS 147 (280)
Q Consensus 145 ~Kk 147 (280)
++|
T Consensus 102 rrk 104 (106)
T 4euw_A 102 RRR 104 (106)
T ss_dssp ---
T ss_pred CCC
Confidence 874
No 13
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.86 E-value=3.3e-22 Score=152.09 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=75.8
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy7578 68 SQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKTK 146 (280)
Q Consensus 68 ~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~K 146 (280)
.++++||||+||||+|++++|.+++.+||++++.||+++||++|++|+++||++|+++|++++++|.+++.+|...|++
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~p~~ 81 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSGPSS 81 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999777765
No 14
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.86 E-value=5.2e-22 Score=156.99 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=72.8
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 66 DLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 66 ~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+.+|+++||||+||||+|++++|.+|+.+||++++.||+++||++|++||++||++|.++|++++++|+++|++|
T Consensus 4 k~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y 78 (99)
T 1k99_A 4 LKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARF 78 (99)
T ss_dssp CCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999987
No 15
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.86 E-value=2.3e-22 Score=156.10 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=71.9
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 65 DDLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 65 ~~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+..+|+++||||+||||+|++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|+++|..+
T Consensus 13 k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~~ 88 (90)
T 1wgf_A 13 GGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSGPS 88 (90)
T ss_dssp CCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCSSC
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999888654
No 16
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=152.32 Aligned_cols=76 Identities=25% Similarity=0.421 Sum_probs=72.9
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy7578 68 SQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQ 143 (280)
Q Consensus 68 ~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~ 143 (280)
.++++||||+||||+|++++|.+++.+||++++.||+++||++|++|+++||++|+++|++++++|+++|.+|...
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~ 78 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQ 78 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999998543
No 17
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.86 E-value=1.1e-21 Score=152.61 Aligned_cols=74 Identities=23% Similarity=0.416 Sum_probs=72.2
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCC
Q psy7578 68 SQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAP 141 (280)
Q Consensus 68 ~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~ 141 (280)
+|+++||||+||||+|++++|.+|+.+||++++.||+++||++|++|+++||++|.++|++++++|.++|.+|.
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~ 76 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQ 76 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999984
No 18
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=1.2e-21 Score=148.76 Aligned_cols=78 Identities=27% Similarity=0.436 Sum_probs=69.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCCCc
Q psy7578 70 ESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKTKS 147 (280)
Q Consensus 70 ~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~Kk 147 (280)
+++||||+||||||++++|.+++.+||++++.||+++||++|++|+++||++|.++|++++++|.+++.+|...|+++
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky~pr~~ 79 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPK 79 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-------
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCeeccCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999998888764
No 19
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.85 E-value=1.3e-21 Score=149.16 Aligned_cols=73 Identities=25% Similarity=0.447 Sum_probs=70.9
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 68 SQESIEKARFTAYMLWAKQIRQKLIKSNPEMD--FSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 68 ~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls--~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+|+++||||+||||+|++++|.+++.+||+++ +.||+++||++|++|+++||++|.++|++++++|+++|..|
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 77 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 77 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999987 59999999999999999999999999999999999999998
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.84 E-value=3.5e-21 Score=142.18 Aligned_cols=69 Identities=25% Similarity=0.439 Sum_probs=66.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 72 IEKARFTAYMLWAKQIRQKLIKSNPEMDF--SQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 72 ~PKRP~sAY~LF~ke~R~kik~e~P~ls~--~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+||||+||||+|++++|.+++.+||++++ .||+++||++|++|+++||++|.++|++++++|+++|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 59999999999999999999999999974 9999999999999999999999999999999999999875
No 21
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.84 E-value=6.7e-21 Score=146.22 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=72.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy7578 71 SIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKTK 146 (280)
Q Consensus 71 ~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~K 146 (280)
.+||||+||||+|++++|.+++.+||++++.||+++||++|++|+++||++|.++|++++++|.+++.+|...|..
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~~p~~ 76 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY 76 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCSCSST
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccCCCCC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999766654
No 22
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.84 E-value=2.9e-21 Score=142.30 Aligned_cols=70 Identities=29% Similarity=0.555 Sum_probs=63.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 71 SIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 71 ~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
++||||+||||+|++++|.+++.+||++++.||+++||++|++|+++||++|.++|++++++|.+++.+|
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Y 70 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNY 70 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCc
Confidence 4799999999999999999999999999999999999999999999999999999999999999988776
No 23
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.84 E-value=5.7e-21 Score=142.41 Aligned_cols=69 Identities=28% Similarity=0.632 Sum_probs=67.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 70 ESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 70 ~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
|++||||+||||+|++++|.+++.+||++++.||+++||++|++| +||++|+++|++++++|.++|..|
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y 69 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNY 69 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGG
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999 899999999999999999999988
No 24
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.84 E-value=6.1e-21 Score=142.26 Aligned_cols=68 Identities=26% Similarity=0.582 Sum_probs=66.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 71 SIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 71 ~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
++||||+||||+||+++|.+|+.+||++++.||+++||++|++|++ |++|+++|++++++|+++|.+|
T Consensus 2 ~~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y 69 (73)
T 3nm9_A 2 DKPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEF 69 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998 9999999999999999999987
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.83 E-value=1.6e-21 Score=152.15 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=73.0
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 65 DDLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 65 ~~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+..+|+++||||+||||+|++++|.+++.+||++++.||+++||++|++|+++||++|.++|++++++|.++|..|
T Consensus 13 k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 13 RKKKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999999999999999999999999999887
No 26
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.82 E-value=1.4e-21 Score=153.46 Aligned_cols=76 Identities=24% Similarity=0.486 Sum_probs=73.1
Q ss_pred ccccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 65 DDLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMD--FSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 65 ~~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls--~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
...+|+++||||+||||+|++++|.+++.+||+++ +.||+++||++|++|+++||++|+++|++++++|.++|..|
T Consensus 15 k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~y 92 (97)
T 2lhj_A 15 KAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYEREKAEY 92 (97)
T ss_dssp CTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35579999999999999999999999999999999 99999999999999999999999999999999999999887
No 27
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.81 E-value=5.3e-20 Score=144.34 Aligned_cols=69 Identities=16% Similarity=0.331 Sum_probs=67.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 71 SIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 71 ~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+.||||+||||+|+++.|..++.++|+ +++||+|.||++|++|+++||++|+++|++++++|+++|+.|
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y 71 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEM 71 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999 999999999999999999999999999999999999999998
No 28
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=134.65 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 71 SIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 71 ~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
++||||+|||++|++++|.+++.+|| .||+++||++|++||++||++|.++|++++++|+++|++|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999987776 7999999999999999999999999999999999999887
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=151.74 Aligned_cols=76 Identities=24% Similarity=0.431 Sum_probs=72.8
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCC
Q psy7578 67 LSQESIEKARFTAYMLWAKQIRQKLIKSNPE--MDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPA 142 (280)
Q Consensus 67 ~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~--ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~ 142 (280)
..|+++||||+||||+|++++|.+|+.+||+ +++.||+++||++|++|+++||++|.++|+.++++|+++|..|..
T Consensus 10 k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~ 87 (173)
T 2yrq_A 10 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP 87 (173)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4689999999999999999999999999999 689999999999999999999999999999999999999999943
No 30
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.78 E-value=3e-19 Score=143.47 Aligned_cols=71 Identities=11% Similarity=0.233 Sum_probs=67.6
Q ss_pred cccCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 66 DLSQESIE-KARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 66 ~~~d~~~P-KRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
+.+|+++| |||+||||+||+++|.+++ ++++.||+++||++|++|+++||++|+++|++++++|+++|..|
T Consensus 10 k~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 10 KDKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp SCCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999 9999999999999999986 89999999999999999999999999999999999999999987
No 31
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2e-19 Score=137.88 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=59.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHcCCChhhHHHHHHHHHHHH
Q psy7578 69 QESIEKARFTAYMLWAKQIRQKLIKSNPEMD-FSQVSKKLGELWHTVPFNEKYGWKRQADRLA 130 (280)
Q Consensus 69 d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls-~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~k 130 (280)
++++||||+||||+|++++|.+|+.+||+++ +.||+|+||++|++|+++||++|+++|+++.
T Consensus 2 ~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 2 SSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999998 9999999999999999999999999999873
No 32
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=141.93 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=66.6
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHcCCChhhHHHHHHHHHHHHHHHHHHHhh
Q psy7578 68 SQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKL---GELWHTVPFNEKYGWKRQADRLAAKYTQKMSK 139 (280)
Q Consensus 68 ~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~L---ge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~ 139 (280)
.+.++||||+||||+|++++|++|+.+ ++++.||+++| |++|++|+++||++|+++|++++++|+++++.
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~~ 78 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGP 78 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccccc
Confidence 468899999999999999999999988 89999999999 99999999999999999999999999998854
No 33
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.76 E-value=1.3e-18 Score=138.12 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=64.6
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 68 SQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 68 ~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
...++||||+||||+||++++. ..+++++++.||+|+||++|++|+++||++|+++|++++++|+++|+.|
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 74 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLW 74 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999975 3456678999999999999999999999999999999999999999987
No 34
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.76 E-value=5.8e-20 Score=143.87 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=64.3
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHH
Q psy7578 66 DLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMD--FSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137 (280)
Q Consensus 66 ~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls--~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~em 137 (280)
..+|+++||||+|||||||+++|.+|+.+||+++ ++||+ ++|++|+++||++|+++|++++++|+.+.
T Consensus 16 ~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~~ 85 (90)
T 2yuk_A 16 WEKEEALGEMATVAPVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRINK 85 (90)
T ss_dssp HHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 3468999999999999999999999999999999 99999 99999999999999999999999998753
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.75 E-value=6.5e-21 Score=169.57 Aligned_cols=123 Identities=13% Similarity=0.187 Sum_probs=95.3
Q ss_pred ccccccch--hhhhhhhccCCCCCCccccccCCcc---cccccC----CC------------CcccccccccccccCCCC
Q psy7578 14 VNISDISD--SELYNSAQAVGSGADEEFGEADSSL---DAESIG----SG------------DLADNLLIDEDDLSQESI 72 (280)
Q Consensus 14 v~~se~sk--se~~~t~s~~~~g~~e~~~~a~s~~---~~~s~g----~~------------k~~kk~~~k~~~~~d~~~ 72 (280)
..|+||++ ++.|++++..++..+++.+..+... ++..+. .. ..+++...+.+..+|+++
T Consensus 35 ~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~tp~q~~~~~~~~~~~~~krk~~kkkk~~kdp~~ 114 (214)
T 3tq6_A 35 AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGK 114 (214)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHhhhcchhhhhhhccccC
Confidence 45899999 9999999999888888877655432 111110 00 001111112234568999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 73 EKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 73 PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
||||+||||+||+++|.+++.++| .||+++||++|++|+++||++|+++|++++++|+++|++|
T Consensus 115 PKrP~say~lF~~e~r~~~k~~~p----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y 178 (214)
T 3tq6_A 115 PKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 178 (214)
T ss_dssp CCCCCCHHHHHHHHHTTTSSCSSH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhHHHHHHhhccCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876665 4999999999999999999999999999999999999987
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.75 E-value=5.5e-21 Score=172.53 Aligned_cols=123 Identities=13% Similarity=0.191 Sum_probs=96.0
Q ss_pred ccccccch--hhhhhhhccCCCCCCccccccCCcc---cccccC----CC------------CcccccccccccccCCCC
Q psy7578 14 VNISDISD--SELYNSAQAVGSGADEEFGEADSSL---DAESIG----SG------------DLADNLLIDEDDLSQESI 72 (280)
Q Consensus 14 v~~se~sk--se~~~t~s~~~~g~~e~~~~a~s~~---~~~s~g----~~------------k~~kk~~~k~~~~~d~~~ 72 (280)
..|+||++ +++|++++..++..+++.++.+... ++..+. .. ..+++...+.+..+|+++
T Consensus 67 ~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~~p~~~~~~~~~~~~k~~krk~~~kkk~~kdp~~ 146 (238)
T 3tmm_A 67 AKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGK 146 (238)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhcccchhhhcccCC
Confidence 45799999 9999999999998888877655432 111111 00 001111112234578999
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 73 EKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 73 PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
||||+||||+||+++|.+++.+||+ ||+++||++|++|+++||++|+++|++++++|+++|+.|
T Consensus 147 PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y 210 (238)
T 3tmm_A 147 PKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 210 (238)
T ss_dssp CCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998766654 999999999999999999999999999999999999987
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.72 E-value=2.2e-17 Score=139.32 Aligned_cols=76 Identities=28% Similarity=0.486 Sum_probs=72.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy7578 70 ESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKAPAQKT 145 (280)
Q Consensus 70 ~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~~~~p~ 145 (280)
+++||||+||||+|+++.|.+|+.+||++++.||+++||++|++|+++||++|.++|+.++++|.+++..|...+.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~~k~ 77 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRKG 77 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSCCCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccccccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999865543
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.72 E-value=6.3e-18 Score=152.49 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=72.5
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 66 DLSQESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 66 ~~~d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
...++++||||+||||+|++++|.+|+.+||++++.||+++||++|++|+++||++|+++|++++++|+++|..|
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y 109 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRF 109 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999999987
No 39
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=148.66 Aligned_cols=72 Identities=15% Similarity=0.307 Sum_probs=70.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHhhC
Q psy7578 69 QESIEKARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKMSKA 140 (280)
Q Consensus 69 d~~~PKRP~sAY~LF~ke~R~kik~e~P~ls~~eIsK~Lge~Wk~LseeEK~~Y~~kA~~~kekY~~ema~~ 140 (280)
.+++||||+||||+|++++|.+++.+||++++.||+++||++|++|+++||++|+++|+.++++|+++|..|
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y 77 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRF 77 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhh
Confidence 467899999999999999999999999999999999999999999999999999999999999999999987
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=69.35 E-value=8.4 Score=33.28 Aligned_cols=47 Identities=15% Similarity=0.376 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHH-HHHHHcCCChhhHHHHHHHHHH-HHHHHHHHHhhCC
Q psy7578 95 NPEMDFSQVSKK-LGELWHTVPFNEKYGWKRQADR-LAAKYTQKMSKAP 141 (280)
Q Consensus 95 ~P~ls~~eIsK~-Lge~Wk~LseeEK~~Y~~kA~~-~kekY~~ema~~~ 141 (280)
.|-.++..+++. ||.-|+.+++++|+.|.+..+. +...|-..+..|.
T Consensus 69 ~p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~ 117 (211)
T 2qgu_A 69 VPRADFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVR 117 (211)
T ss_dssp GGGBCHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hhhcCHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 378899998865 5899999999999999988877 5667888898884
No 41
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.83 E-value=0.29 Score=36.54 Aligned_cols=32 Identities=6% Similarity=-0.001 Sum_probs=27.4
Q ss_pred cccccch--hhhhhhhccCCCCCCccccccCCcc
Q psy7578 15 NISDISD--SELYNSAQAVGSGADEEFGEADSSL 46 (280)
Q Consensus 15 ~~se~sk--se~~~t~s~~~~g~~e~~~~a~s~~ 46 (280)
||+||++ +++|++++..++...++.++.+...
T Consensus 33 ~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~~~ 66 (81)
T 2d7l_A 33 DEADIIKEGMIRFRVLSTEERKVWANKAKGETAS 66 (81)
T ss_dssp SHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSSSS
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 4889999 9999999999999888888877543
No 42
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=58.21 E-value=0.31 Score=37.59 Aligned_cols=38 Identities=5% Similarity=-0.086 Sum_probs=31.2
Q ss_pred ccccccccccccch--hhhhhhhccCCCCCCccccccCCc
Q psy7578 8 IMLKEEVNISDISD--SELYNSAQAVGSGADEEFGEADSS 45 (280)
Q Consensus 8 ~~~~~~v~~se~sk--se~~~t~s~~~~g~~e~~~~a~s~ 45 (280)
++...+-+|+||++ +++|++++..++...++.+..+..
T Consensus 23 ~k~~~p~~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~ 62 (91)
T 1l8y_A 23 YLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQK 62 (91)
T ss_dssp HHHHTTSTHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 34444558899999 999999999999999998877765
No 43
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=39.22 E-value=5 Score=30.16 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=24.7
Q ss_pred ccccccch--hhhhhhhccCCCCCCccccccC
Q psy7578 14 VNISDISD--SELYNSAQAVGSGADEEFGEAD 43 (280)
Q Consensus 14 v~~se~sk--se~~~t~s~~~~g~~e~~~~a~ 43 (280)
++|+||++ ++.|++++..++...++.++.+
T Consensus 50 ~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~ 81 (97)
T 2lhj_A 50 KDVAAIGKMIGAAWNALSDEEKKPYERMSDED 81 (97)
T ss_dssp TCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34899999 9999999998888888776543
No 44
>1mzw_B U4/U6 snRNP 60KDA protein; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
Probab=32.24 E-value=7.1 Score=24.25 Aligned_cols=19 Identities=42% Similarity=0.803 Sum_probs=16.8
Q ss_pred hHHHHHHHhhhhHHHhhhh
Q psy7578 202 DIAAHLRLLGDNLTIIGER 220 (280)
Q Consensus 202 d~aahl~ll~~~l~~~g~~ 220 (280)
||-+.|+.|||..+++||.
T Consensus 1 eV~~~LR~lgePi~lFGE~ 19 (31)
T 1mzw_B 1 EVKASLRALGEPITLFGEG 19 (31)
T ss_dssp CHHHHHHHTTCCSEETTCC
T ss_pred CHHHHHHHcCCCeeecCCC
Confidence 5778899999999999985
No 45
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.36 E-value=70 Score=23.76 Aligned_cols=41 Identities=2% Similarity=-0.018 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCC-----HHHHHHHHHHHHcCCChhhHHHHHH
Q psy7578 84 AKQIRQKLIKSNPEMD-----FSQVSKKLGELWHTVPFNEKYGWKR 124 (280)
Q Consensus 84 ~ke~R~kik~e~P~ls-----~~eIsK~Lge~Wk~LseeEK~~Y~~ 124 (280)
.+.+|...+.-||+.. ..+..+.|.+-|..|++.++..-.+
T Consensus 35 k~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD 80 (99)
T 2yua_A 35 KAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYD 80 (99)
T ss_dssp HHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4556777777889876 3578899999999999887644333
No 46
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=25.79 E-value=1.3e+02 Score=21.02 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCC----HHHHHHHHHHHHcCCChhhHHH
Q psy7578 85 KQIRQKLIKSNPEMD----FSQVSKKLGELWHTVPFNEKYG 121 (280)
Q Consensus 85 ke~R~kik~e~P~ls----~~eIsK~Lge~Wk~LseeEK~~ 121 (280)
+.+|...+.-||+.. ..+..+.|.+-|..|++.++..
T Consensus 22 ~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 22 RAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp HHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 455666667788764 4678889999999998886643
No 47
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=24.30 E-value=1e+02 Score=22.48 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCC--HHHHHHHHHHHHcCCChhhHHHHHH
Q psy7578 84 AKQIRQKLIKSNPEMD--FSQVSKKLGELWHTVPFNEKYGWKR 124 (280)
Q Consensus 84 ~ke~R~kik~e~P~ls--~~eIsK~Lge~Wk~LseeEK~~Y~~ 124 (280)
.+.+|...+.-||+.. ..+..+.|.+-|..|++.++..-.+
T Consensus 26 k~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD 68 (92)
T 2o37_A 26 KKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68 (92)
T ss_dssp HHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 3556667777889864 4578889999999999887654443
No 48
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=22.44 E-value=94 Score=21.52 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCH--HHHHHHHHHHHcCCChhhHHH
Q psy7578 84 AKQIRQKLIKSNPEMDF--SQVSKKLGELWHTVPFNEKYG 121 (280)
Q Consensus 84 ~ke~R~kik~e~P~ls~--~eIsK~Lge~Wk~LseeEK~~ 121 (280)
.+.+|...+.-||+... .+..+.|.+-|..|++.++..
T Consensus 26 k~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 26 KKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp HHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence 34566666777888653 477888999999998776643
No 49
>2dk4_A PRE-mRNA-splicing factor 18; SFM domain, HPRP18, structural NPPSFA, national project on protein structural and function analyses; NMR {Homo sapiens} SCOP: a.140.6.1
Probab=20.84 E-value=22 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.3
Q ss_pred CCCChhhHHHHHHHhhhhHHHhhhh
Q psy7578 196 TGTQPLDIAAHLRLLGDNLTIIGER 220 (280)
Q Consensus 196 p~~~~id~aahl~ll~~~l~~~g~~ 220 (280)
..+...+|-+.|+.|||..+++||.
T Consensus 25 v~~~d~eV~~~LR~lgEPi~LFGE~ 49 (76)
T 2dk4_A 25 MTLSRQEVIRRLRERGEPIRLFGET 49 (76)
T ss_dssp CCSCHHHHHHHHHHHTCCSSCTTCC
T ss_pred CCCCHHHHHHHHHHcCCCeeecCCC
Confidence 3478889999999999999999984
No 50
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.52 E-value=93 Score=21.80 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCCCH-----HHHHHHHHHHHcCCChhhHH
Q psy7578 84 AKQIRQKLIKSNPEMDF-----SQVSKKLGELWHTVPFNEKY 120 (280)
Q Consensus 84 ~ke~R~kik~e~P~ls~-----~eIsK~Lge~Wk~LseeEK~ 120 (280)
.+.+|...+.-||+... .+..+.|.+-|..|++.++.
T Consensus 25 k~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R 66 (79)
T 2dn9_A 25 KKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66 (79)
T ss_dssp HHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
Confidence 34566666777888553 46777888888888776554
Done!