RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7578
(280 letters)
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 66.0 bits (161), Expect = 8e-15
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
A+M+W++ R+K+ + NP+M S++SK+LG W + EK + +A RL A + ++
Sbjct: 8 NAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEH 67
Query: 138 S---KAPAQKTKS 147
P +KTK+
Sbjct: 68 PDYKYRPRRKTKT 80
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 63.3 bits (154), Expect = 1e-13
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
A+ML+ K++R ++ + + + +++ LG WH + E+ + A + + Q
Sbjct: 8 NAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLY 67
Query: 138 SKAPAQKTKSTYTPHGR 154
P + Y +
Sbjct: 68 ---PGWSARDNYGKKKK 81
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 62.5 bits (152), Expect = 2e-13
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
A+++W++ R+K+ NP M S++SK+LG W + EK+ + ++A +L A + +K
Sbjct: 10 NAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY 69
Query: 138 ---SKAPAQKTKS 147
P +K K
Sbjct: 70 PNYKYRPRRKAKM 82
>d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 61.1 bits (148), Expect = 6e-13
Identities = 13/74 (17%), Positives = 30/74 (40%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
T Y + + R K K +PEM ++K L + + +P +K + + R ++ + +
Sbjct: 16 TPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNL 75
Query: 138 SKAPAQKTKSTYTP 151
++
Sbjct: 76 ARFREDHPDLIQNA 89
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 60.2 bits (146), Expect = 7e-13
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
A+M+WAK R+K++++ P+M S +SK LG W + EK + + RL+ ++ +K
Sbjct: 8 NAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKY 67
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 79
Score = 60.6 bits (147), Expect = 7e-13
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
+A+ L+ + R K+ +P + V+KKLGE+W+ ++K ++++A +L KY + +
Sbjct: 8 SAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 67
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 59.9 bits (145), Expect = 1e-12
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 78 TAYMLWAKQIRQKLIKSNPE--MDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQ 135
++Y + + R++ K +P+ ++FS+ SKK E W T+ EK ++ A A+Y +
Sbjct: 7 SSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYER 66
Query: 136 KM 137
+M
Sbjct: 67 EM 68
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 57.7 bits (139), Expect = 1e-11
Identities = 13/61 (21%), Positives = 35/61 (57%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
+A +++++ R++L + PE+ S++++ L +W+ + +K +K + L A+ +K
Sbjct: 26 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKS 85
Query: 138 S 138
Sbjct: 86 G 86
>d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]}
Length = 73
Score = 56.7 bits (137), Expect = 2e-11
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
+AYMLW R+ + + NP + ++V+K+ GELW + +K W+ +A + Y + +
Sbjct: 9 SAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAV 66
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 57.2 bits (138), Expect = 2e-11
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
+AYM +A + R + NP++ F QV KKLGE W + EK ++ +A +Y +
Sbjct: 26 SAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEK 85
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 56.1 bits (135), Expect = 5e-11
Identities = 7/62 (11%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 78 TAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKYTQKM 137
Y +++++ + + ++G W + ++K +K+ A+ +Y +
Sbjct: 14 NGYQKFSQELLSNG--ELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHL 71
Query: 138 SK 139
Sbjct: 72 DL 73
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 52.6 bits (126), Expect = 1e-09
Identities = 8/66 (12%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 74 KARFTAYMLWAKQIRQKLIKSNPEMDFSQVSKKLGELWHTVPFNEKYGWKRQADRLAAKY 133
K +Y L+ ++ + ++ ++ + W + EK + ++ D+ Y
Sbjct: 19 KPPPNSYSLYCAELMANM----KDVPSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDY 74
Query: 134 TQKMSK 139
++ +
Sbjct: 75 EVELLR 80
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta
subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 325
Score = 30.0 bits (67), Expect = 0.33
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 233 GMSLLLDSFLCALGPLLCLTQQIPEENGCSPETLS 267
G+SLL + + + P+ C+ +++ + PE +S
Sbjct: 291 GLSLLGEEQIKPVSPVFCMPEEVLQRVNVQPELVS 325
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 103
Score = 26.8 bits (59), Expect = 1.2
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 37 EEFGEADSSLDAESIGSGDLADNLLIDE 64
E+ + S E G DLA L +
Sbjct: 2 EKILDLLMSFVKEDEGKLDLASFPLRNT 29
>d1gyca2 b.6.1.3 (A:131-300) Laccase {Trametes versicolor, laccase 2
[TaxId: 5325]}
Length = 170
Score = 26.6 bits (58), Expect = 2.9
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 154 RVGRPPLNKQTVEAVIETKPSPPAAPRVPLVKPTLP 189
G A++ + +P A P +P
Sbjct: 134 NFGTVGFAGGINSAILRYQGAPVAEPTTTQTTSVIP 169
>d2lisa_ a.19.1.1 (A:) Lysin {Red abalone (Haliotis rufescens)
[TaxId: 6454]}
Length = 131
Score = 25.5 bits (56), Expect = 4.0
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 79 AYMLWAKQIRQKLIKSNPEMDFSQVSKKLGE---LWHTVPFNEKYGWKRQADRLAAKYTQ 135
YMLW + L ++ D++++ ++G + + F + + KY
Sbjct: 61 NYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDK-------NMIPKYLP 113
Query: 136 KMSK 139
M +
Sbjct: 114 YMEE 117
>d3lyna_ a.19.1.1 (A:) Lysin {Green abalone (Haliotis fulgens)
[TaxId: 6456]}
Length = 122
Score = 25.5 bits (56), Expect = 4.3
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 79 AYMLWAKQIRQKLIKSNPEMDFSQVSKKLGE---LWHTVPFNEKYGWKRQADRLAAKYTQ 135
YMLW K+ + L + D++++ ++G + F ++ Y+
Sbjct: 54 NYMLWVKRKIKALGRPAAVGDYTRLGAEIGRRVDMVFFYNFLSGR-------KMIPPYSA 106
Query: 136 KMSK 139
M+K
Sbjct: 107 YMAK 110
>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 25.2 bits (54), Expect = 4.9
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 154 RVGR-----PPLNKQTVEAVIETKPSPPAAPRVPLVKPT 187
R+G PP+ ++T++ V P PP P V+ T
Sbjct: 1 RIGDGSPSHPPILERTLDDV----PGPPMGILFPEVRTT 35
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia
coli [TaxId: 562]}
Length = 147
Score = 25.7 bits (56), Expect = 5.0
Identities = 8/50 (16%), Positives = 15/50 (30%)
Query: 143 QKTKSTYTPHGRVGRPPLNKQTVEAVIETKPSPPAAPRVPLVKPTLPADL 192
+ ++ PH G P VE K S + ++ +
Sbjct: 58 ARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSRRDILISLRTSFADFA 107
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
cardiophyllum) [TaxId: 160510]}
Length = 360
Score = 26.1 bits (56), Expect = 5.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 62 IDEDDLSQESIEKARFTAYMLWAKQIRQKLIKSNPE 97
+ DD S+ ++E L K + + ++ E
Sbjct: 305 TEMDDASEANMELLVQVGENLLKKPVSEDNPETYEE 340
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 25.5 bits (55), Expect = 7.9
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 151 PHGRVGRPPLNKQTVEAVIETKPSPPAAPRVPLV 184
P G K ++A + + + P++ P++
Sbjct: 2 PSGSDPAFSQPKSVLDAGLTCQGASPSSVSKPIL 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.380
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 993,087
Number of extensions: 44262
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 27
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)