BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7579
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/159 (50%), Positives = 112/159 (70%)
Query: 19 KNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVA 78
K T+ +L++LR M+ + +V E IQAYI+ S DAH SEY+A D RRAFVSGF GSAG A
Sbjct: 4 KVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTA 63
Query: 79 IVTTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPAL 138
I+T + A +WTDGRY LQA++++D+NWTLMK GL T ++++WLV LP GS+VGVDP +
Sbjct: 64 IITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLI 123
Query: 139 ITFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVP 177
I +K + G ++P+K NLVD +W ++P P
Sbjct: 124 IPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERP 162
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%)
Query: 179 GLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 238
GL T ++++WLV LP GS+VGVDP +I +K + G ++P+K NLVD +W
Sbjct: 96 GLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIW 155
Query: 239 ENKPGVPNGTVTPLGLKYTGKTIDKKLEQVREKMNEKKATVLVLTALDEVA 289
++P P + LGL YTG + K+ +R KM E+ V+TALDE+A
Sbjct: 156 TDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIA 206
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 67 FVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQELDNNWTLMKAG 111
+ SGFTGS + +++ + LL TD RY +QA QE D +K G
Sbjct: 34 YFSGFTGSFSIILISENTRLLITDSRYTVQAKQETDFEVREVKGG 78
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 62 DQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEW 121
+ R +++ FTG+AGV +++ +A TD RY QAS++ + AGL + E
Sbjct: 27 EHSRRYMANFTGTAGVVLISKKRAQFITDFRYVEQASKQAVGYEIVQHAGL--IIDEVAK 84
Query: 122 LVKNLPAGSKVGVDPALITFQEFKNYE 148
VK L K+G + +T+ + ++
Sbjct: 85 QVKELGI-QKLGFEQDTLTYSSYSAHK 110
>pdb|3QOC|A Chain A, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
pdb|3QOC|B Chain B, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
pdb|3QOC|C Chain C, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
pdb|3QOC|D Chain D, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
Length = 135
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 67 FVSGFTGSAGVAIVTTD-KALLWTDGRYHLQASQELDNNWTLM-KAGLPTTLSE 118
++SGFTGS I+ D A + TDGRY Q ++++ + +L + P LS+
Sbjct: 39 YLSGFTGSNAALIINKDLSARISTDGRYITQIAEQVPDIESLXARNCAPALLSD 92
>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
Length = 132
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 67 FVSGFTGSAGVAIVTTDKALLWTDGRYHLQA 97
+++GF+G+A ++T + +L TD RY L A
Sbjct: 37 YLTGFSGTAATVLITAKRRVLITDSRYTLLA 67
>pdb|2JKC|A Chain A, Crystal Structure Of E346d Of Tryptophan 7-Halogenase
(Prna)
Length = 538
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 20 NTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAI 79
++TGI A+ + H P+ ++ DA +E + D R FV A
Sbjct: 346 DSTGIYFIYAALYQLVKHFPDT--SFDPRLSDAFNAEIVHMFDDCRDFVQ-----AHYFT 398
Query: 80 VTTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTT 115
+ D W R+ L+ S + KAGLP T
Sbjct: 399 TSRDDTPFWLANRHDLRLSDAIKEKVQRYKAGLPLT 434
>pdb|2APG|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests A
Mechanism For Regioselective Chlorination
pdb|2AQJ|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests A
Mechanism For Regioselective Chlorination
pdb|2AR8|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna)suggests A
Mechanism For Regioselective Chlorination
pdb|2ARD|A Chain A, The Structure Of Tryptophan 7-Halogenase (Prna) Suggests A
Mechanism For Regioselective Chlorination
Length = 538
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 21 TTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIV 80
+TGI A+ + H P+ ++ DA +E + D R FV A
Sbjct: 347 STGIYFIYAALYQLVKHFPDT--SFDPRLSDAFNAEIVHMFDDCRDFVQ-----AHYFTT 399
Query: 81 TTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTT 115
+ D W R+ L+ S + KAGLP T
Sbjct: 400 SRDDTPFWLANRHDLRLSDAIKEKVQRYKAGLPLT 434
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 70 GFTGSAGVAIVTTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKN 125
G G VAI TD+ ++ G ++ Q + D N ++ G + + W++KN
Sbjct: 241 GQAGPVAVAIDATDELQFYSGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKN 296
>pdb|4AXN|A Chain A, Hallmarks Of Processive And Non-Processive Glycoside
Hydrolases Revealed From Computational And
Crystallographic Studies Of The Serratia Marcescens
Chitinases
pdb|4AXN|B Chain B, Hallmarks Of Processive And Non-Processive Glycoside
Hydrolases Revealed From Computational And
Crystallographic Studies Of The Serratia Marcescens
Chitinases
Length = 328
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 148 ETEFENGGLTMLPIKTNLVDLVWENKPGVPNGLPTTLSEKEW 189
+ +F N LT +P + N+V + + G+P P LS+ E+
Sbjct: 44 QGQFANMNLTDIPTEYNVVAVAFMKGQGIPTFKPYNLSDTEF 85
>pdb|4FIX|A Chain A, Crystal Structure Of Glft2
pdb|4FIX|B Chain B, Crystal Structure Of Glft2
pdb|4FIY|A Chain A, Crystal Structure Of Glft2 Complexed With Udp
pdb|4FIY|B Chain B, Crystal Structure Of Glft2 Complexed With Udp
Length = 657
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 75 AGVAIVTTDKA----LLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGS 130
GV D+A LLW R Q + + + + LPT S+++W LPA +
Sbjct: 592 CGVVYRQRDRAKMFALLWQSLRRQRQLLKRFEEMRRIYRDALPTLSSKQKWETALLPAAN 651
Query: 131 K 131
+
Sbjct: 652 Q 652
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 83 DKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKN--LPAGSKVGVD 135
+K LW GRY L+ S + +W LP L ++ VK+ P G ++ ++
Sbjct: 568 EKTFLW--GRYSLEMSAVIYKDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIE 620
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 70 GFTGSAGVAIVTTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKN 125
G G A VA+ +++ G Y Q L N ++ G T W+VKN
Sbjct: 218 GAEGPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKN 273
>pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 165 LVDLVWENKPGVPNGLPTTLSEKEWLVKNLPAGSKVGV 202
+++ VW P +P+G+ + LS +E + ++L + VG+
Sbjct: 187 IMEQVWNAGPWIPDGVVSALSLRERIREHLSSEESVGL 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,366,753
Number of Sequences: 62578
Number of extensions: 419342
Number of successful extensions: 695
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 27
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)