Query psy7579
Match_columns 289
No_of_seqs 251 out of 1652
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:02:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2413|consensus 100.0 2.8E-47 6E-52 373.4 14.1 193 23-289 10-202 (606)
2 PF01321 Creatinase_N: Creatin 99.7 5.3E-17 1.2E-21 131.7 9.9 125 24-169 1-130 (132)
3 PRK09795 aminopeptidase; Provi 99.7 7.6E-17 1.7E-21 154.2 11.3 124 23-171 2-127 (361)
4 TIGR02993 ectoine_eutD ectoine 99.2 1.5E-10 3.2E-15 112.2 11.2 135 18-171 8-158 (391)
5 PRK14575 putative peptidase; P 98.8 1.8E-08 3.8E-13 98.4 10.7 131 22-171 10-178 (406)
6 COG0006 PepP Xaa-Pro aminopept 98.6 6.1E-07 1.3E-11 86.6 12.9 132 19-170 8-153 (384)
7 PRK14576 putative endopeptidas 98.5 9.2E-07 2E-11 86.3 10.7 128 25-171 13-177 (405)
8 KOG2413|consensus 95.3 0.013 2.8E-07 59.4 3.2 74 20-110 173-256 (606)
9 PF05195 AMP_N: Aminopeptidase 93.2 0.049 1.1E-06 45.3 1.8 69 17-92 2-77 (134)
10 PRK10879 proline aminopeptidas 91.0 0.62 1.3E-05 46.2 6.8 68 18-92 3-79 (438)
11 COG0708 XthA Exonuclease III [ 87.7 1.2 2.6E-05 41.4 5.7 71 1-86 1-75 (261)
12 PF14826 FACT-Spt16_Nlob: FACT 85.6 1.2 2.6E-05 38.4 4.2 143 19-162 4-160 (163)
13 PRK13911 exodeoxyribonuclease 78.1 7.3 0.00016 35.7 6.7 67 1-84 1-72 (250)
14 PRK15173 peptidase; Provisiona 73.0 5.5 0.00012 37.8 4.7 41 129-171 55-95 (323)
15 PRK11756 exonuclease III; Prov 72.7 11 0.00023 34.3 6.3 67 1-83 1-71 (268)
16 TIGR00195 exoDNase_III exodeox 67.6 16 0.00035 32.8 6.3 69 1-84 1-72 (254)
17 TIGR00633 xth exodeoxyribonucl 59.9 20 0.00043 31.8 5.4 37 1-52 1-38 (255)
18 PF01321 Creatinase_N: Creatin 58.7 5.9 0.00013 31.2 1.6 40 183-222 78-117 (132)
19 PRK13607 proline dipeptidase; 44.5 65 0.0014 32.1 6.7 59 27-90 18-85 (443)
20 KOG2414|consensus 40.3 40 0.00086 33.6 4.2 70 17-93 63-141 (488)
21 PF15513 DUF4651: Domain of un 32.6 2E+02 0.0043 21.0 5.8 46 23-89 6-51 (62)
22 PRK10416 signal recognition pa 30.5 71 0.0015 30.4 4.2 44 242-289 230-273 (318)
23 PRK11835 hypothetical protein; 26.6 30 0.00065 28.0 0.8 13 63-75 14-26 (114)
24 PRK03094 hypothetical protein; 26.4 58 0.0013 24.9 2.3 31 21-51 6-45 (80)
25 PF09413 DUF2007: Domain of un 25.5 1.3E+02 0.0028 21.2 4.0 52 24-101 11-62 (67)
26 PF13989 YejG: YejG-like prote 24.8 34 0.00073 27.4 0.8 12 63-74 11-22 (106)
27 PF09805 Nop25: Nucleolar prot 24.0 14 0.00031 30.9 -1.6 11 63-73 19-29 (137)
28 PRK04966 hypothetical protein; 21.2 1.7E+02 0.0037 21.9 3.9 29 258-287 32-60 (72)
No 1
>KOG2413|consensus
Probab=100.00 E-value=2.8e-47 Score=373.36 Aligned_cols=193 Identities=51% Similarity=0.896 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCccHHHHhhhcC
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQELD 102 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA~~ql~ 102 (289)
.++.++|+.|++.+ |+|||||+.|+|+|||++++|+|++|+|||+||+|+++||..+|+|||||||+.||.+|++
T Consensus 10 ~~~~~~~~~~~~~~-----i~aYi~Ps~DaH~sEy~~~~D~R~~flsGFsGsag~Avit~~~a~lwtD~RY~~QA~~qld 84 (606)
T KOG2413|consen 10 FELMRLRELMKSPP-----IDAYILPSTDAHQSEYIADRDERRAFLSGFSGSAGTAVITEEEAALWTDGRYFQQAEQQLD 84 (606)
T ss_pred HHHHHHHHHhcCCC-----ceEEEccCCchhhhhhhcchhhhhhhhcccCCCcceEEEecCcceEEEccHHHHHHHhhhc
Confidence 47889999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhhcCCCCCCCCCCC
Q psy7579 103 NNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVPNGLPT 182 (289)
Q Consensus 103 ~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw~~~p~~~~~~~~ 182 (289)
++|++|+.+.+ ++++.+||.+.++.+++||+||.++|+..|+++.+.+..++.++++
T Consensus 85 ~~W~l~k~~~~-~~~v~~wl~~~l~~~~~vG~Dp~Lis~~~~~~~~~~l~s~~~~Lv~---------------------- 141 (606)
T KOG2413|consen 85 SNWTLMKMGED-VPTVEEWLAKVLPEGSRVGIDPTLISFDAWKQLEKSLTSKGLELVP---------------------- 141 (606)
T ss_pred ccceeeeccCC-CccHHHHHHHhCCCccccccCcceechhHHHhHHHHHhhCCCeEee----------------------
Confidence 99999998866 6889999999999999999999999999999999988766666665
Q ss_pred cchhhHHHHhhCCCCCccccCchhhhhHhhhchhhhhhcCCccccCCCCChhhhhccCCCCCCCCCceeccccccCCCHH
Q psy7579 183 TLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVPNGTVTPLGLKYTGKTID 262 (289)
Q Consensus 183 ~~s~~~w~~~~~~~~~~v~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~nlvd~~w~~rp~~~~~~i~~~~~~~~G~~~~ 262 (289)
+..||||.+|.+||+.|.++|+.++.+|+|.+++
T Consensus 142 ----------------------------------------------i~~nLVD~iW~~rP~~~~~~v~~l~~~~~G~~~~ 175 (606)
T KOG2413|consen 142 ----------------------------------------------IPGNLVDEIWGDRPERPGNPVIVLDLEFAGLSVD 175 (606)
T ss_pred ----------------------------------------------ccccchhhhhccCCccCCCceEEeeccccCcchh
Confidence 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy7579 263 KKLEQVREKMNEKKATVLVLTALDEVA 289 (289)
Q Consensus 263 ~Ki~~ir~~l~~~~~~~~~~t~ld~ia 289 (289)
+|+..+|+.|++++|+++|+|+|||||
T Consensus 176 ~Kv~~LR~~l~~~~~~a~Vvs~LdeIa 202 (606)
T KOG2413|consen 176 DKVDNLRKKLKEKKCDAFVVTALDEIA 202 (606)
T ss_pred HHHHHHHHHHhhcCCcEEehhhHHHHH
Confidence 999999999999999999999999997
No 2
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=99.71 E-value=5.3e-17 Score=131.66 Aligned_cols=125 Identities=25% Similarity=0.405 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccc---cccCeEEE-EeCCCcEEEEc-CccHHHHh
Q psy7579 24 ILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGF---TGSAGVAI-VTTDKALLWTD-GRYHLQAS 98 (289)
Q Consensus 24 RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGF---tGS~G~ll-Vt~d~a~L~tD-~RY~~QA~ 98 (289)
|++++|+.|+++| +||++|+++ .|++|+||| +++.++++ |+.++++||+| ++|..+++
T Consensus 1 Rl~rl~~~m~~~g-----id~lll~~~------------~ni~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~ 63 (132)
T PF01321_consen 1 RLERLRAAMAEAG-----IDALLLTSP------------ENIRYLTGFRWQPGERPVLLVITADGAVLFVPKGEYERAAE 63 (132)
T ss_dssp HHHHHHHHHHHTT------SEEEEESH------------HHHHHHHS--ST-TSSEEEEEEESSSEEEEEEGGGHHHHHH
T ss_pred CHHHHHHHHHHCC-----CCEEEEcCh------------hhceEecCCCcCCCcceEEEEecccCcEEEeccccHHHHHH
Confidence 8999999999999 999999999 799999999 88888877 89999999999 78877777
Q ss_pred hhcCCCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhh
Q psy7579 99 QELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 169 (289)
Q Consensus 99 ~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dli 169 (289)
.... ..++..... ..+.+.++|++.+.+.++||+|+..+|+..|+.|++.++ +.++++.+..+..+|
T Consensus 64 ~~~~-~~~v~~~~~-~~~~~~~~l~~~~~~~~~igve~~~~~~~~~~~l~~~~~--~~~~v~~~~~i~~~R 130 (132)
T PF01321_consen 64 ESAP-DDEVVEYED-PYEAIAEALKKLGPEGKRIGVEPDSLSAAEYQRLQEALP--GAEFVDASPLIEELR 130 (132)
T ss_dssp HHTT-SSEEEEEST-HHHHHHHHHHHHTTTTSEEEEETTTSBHHHHHHHHHHST--TSEEEEEHHHHHHHH
T ss_pred hhcC-CceEEEEec-ccchHHHHHHHhCCCCCEEEEcCCcChHHHHHHHHHhCC--CCEEEEcHHHHHHcC
Confidence 7622 234443311 135688999998877799999999999999999999985 468999888776665
No 3
>PRK09795 aminopeptidase; Provisional
Probab=99.70 E-value=7.6e-17 Score=154.19 Aligned_cols=124 Identities=15% Similarity=0.258 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCccHHHHhhhcC
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQELD 102 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA~~ql~ 102 (289)
+||++||+.|++++ +||+||+++ .|++|||||+|++|+++|+.++++||||+||.+||++++.
T Consensus 2 ~Rl~~l~~~m~~~~-----lDa~lI~~~------------~n~~YLTGf~g~~g~llIt~~~~~l~td~ry~~qa~~~~~ 64 (361)
T PRK09795 2 TLLASLRDWLKAQQ-----LDAVLLSSR------------QNKQPHLGISTGSGYVVISRESAHILVDSRYYADVEARAQ 64 (361)
T ss_pred cHHHHHHHHHHHCC-----CCEEEECCc------------cccccccCccCCCeEEEEECCCCEEEcCcchHHHHHhhCC
Confidence 58999999999999 999999999 6999999999999999999999999999999999998876
Q ss_pred CCeEEEecCCCCCcCHHHHHHhhCCC--CCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhhc
Q psy7579 103 NNWTLMKAGLPTTLSEKEWLVKNLPA--GSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVWE 171 (289)
Q Consensus 103 ~~~~l~~~g~~~~~~~~~~L~~~l~~--~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw~ 171 (289)
. +++.... +.+.+.++|.+.++. .++||||+..+++..|+.|.+.+. .++++. .+..+|+.
T Consensus 65 ~-~~v~~~~--~~~~~~~~L~~~L~~~~~~~Ig~e~~~~s~~~~~~L~~~l~---~~~~~~--~~~~lR~i 127 (361)
T PRK09795 65 G-YQLHLLD--ATNTLTTIVNQIIADEQLQTLGFEGQQVSWETAHRWQSELN---AKLVSA--TPDVLRQI 127 (361)
T ss_pred C-ceEEEec--CCccHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhcC---cccccc--cHHHHhcC
Confidence 3 3333221 123566778777653 368999999999999999987652 344443 37778873
No 4
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=99.17 E-value=1.5e-10 Score=112.22 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=95.9
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccC----eEEEEeCC-CcEEEEcCc
Q psy7579 18 AKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSA----GVAIVTTD-KALLWTDGR 92 (289)
Q Consensus 18 ~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~----G~llVt~d-~a~L~tD~R 92 (289)
..++..|++++|+.|+++| +|++||+++ .|++|||||++.. .+++|+.+ +++|+++.+
T Consensus 8 ~~E~~~Rl~rl~~~m~~~~-----lDalli~~~------------~ni~YltG~~~~~~~~~~~l~v~~~~~~~l~~~~~ 70 (391)
T TIGR02993 8 RAEYQARLDKTRAAMEARG-----IDLLIVTDP------------SNMAWLTGYDGWSFYVHQCVLLPPEGEPIWYGRGQ 70 (391)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCEEEEcCc------------ccceeeccCCCCceEEEEEEEEcCCCceEEEehhh
Confidence 3679999999999999999 999999999 7999999999864 35666755 567878766
Q ss_pred cHHHHhhhcC---CCeEEEec--CCCCCcCHHHHHHhhCC----CCCeEEEcCCc--ccHHHHHHHHHHhhcCCceEeec
Q psy7579 93 YHLQASQELD---NNWTLMKA--GLPTTLSEKEWLVKNLP----AGSKVGVDPAL--ITFQEFKNYETEFENGGLTMLPI 161 (289)
Q Consensus 93 Y~~QA~~ql~---~~~~l~~~--g~~~~~~~~~~L~~~l~----~~~~VG~D~~~--is~~~~~~L~~~l~~~~~~lv~~ 161 (289)
+..+|+.+.. ..+..+.. .....+++.+++.+.+. ...+||+|... +|+..|+.|.+.++ ++++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~e~~~~~~~~~~~~~l~~~l~--~~~~~d~ 148 (391)
T TIGR02993 71 DANGAKRTAFMDHDNIVGYPDHYVQSTERHPMDYLSEILQDRGWDSLTIGVEMDNYYFSAAAFASLQKHLP--NARFVDA 148 (391)
T ss_pred hhhhHhheeeccccceeecccccccCCCCCHHHHHHHHHHhcCCCCCcEEEecCCCccCHHHHHHHHHhCC--CCEEEeh
Confidence 6666665431 11111110 00001344555554432 23479999875 79999999998885 4789999
Q ss_pred cccchhhhhc
Q psy7579 162 KTNLVDLVWE 171 (289)
Q Consensus 162 ~~~L~dliw~ 171 (289)
+..+..+|..
T Consensus 149 ~~~~~~lR~i 158 (391)
T TIGR02993 149 TALVNWQRAV 158 (391)
T ss_pred HHHHHHHHcc
Confidence 9999999984
No 5
>PRK14575 putative peptidase; Provisional
Probab=98.84 E-value=1.8e-08 Score=98.37 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccC---------eEEEEeCCC--cE-EEE
Q psy7579 22 TGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSA---------GVAIVTTDK--AL-LWT 89 (289)
Q Consensus 22 ~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~---------G~llVt~d~--a~-L~t 89 (289)
+.-+.++|+.|+++| +|+++|+++ .|++|||||.+.. +.++|+.+. +. |++
T Consensus 10 ~~~~~rlr~~m~~~g-----lD~lvl~~p------------~n~~ylTG~~~~~~~~~r~~~~~~lvv~~~~~~p~~~i~ 72 (406)
T PRK14575 10 NTVSRKLRTIMERDN-----IDAVIVTTC------------DNFYHVTGILSFFMYTFRNTGTAIAVVFRDVKIPSLIIM 72 (406)
T ss_pred HHHHHHHHHHHHHcC-----CCEEeecCc------------chheeecccccccceecccCCceEEEEEcCCCCCceEEe
Confidence 345789999999999 999999999 6999999999743 236788773 34 888
Q ss_pred cCccHHHHhhhcC----CCeEEEecCC-CCC-----------------cC----HHHHHHhhCCCCCeEEEcCCcccHHH
Q psy7579 90 DGRYHLQASQELD----NNWTLMKAGL-PTT-----------------LS----EKEWLVKNLPAGSKVGVDPALITFQE 143 (289)
Q Consensus 90 D~RY~~QA~~ql~----~~~~l~~~g~-~~~-----------------~~----~~~~L~~~l~~~~~VG~D~~~is~~~ 143 (289)
+..+...++.+.. ..+..+.... +-. .+ +.+.|.+....+++||+|...++...
T Consensus 73 p~~E~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~igve~~~~~~~~ 152 (406)
T PRK14575 73 NEFEAASLTLDMPNAELKTFPVWVDVDDPFNMRDSANNNKERPIGPPIESVCNILKDALNDARVLNKKIAIDLNIMSNGG 152 (406)
T ss_pred chhhhhhhcccccccccccCCceEeeeccccccchhhhhhcCCCCCCHHHHHHHHHHHHHhcCCcCCEEEEccCCCCHHH
Confidence 8888888775421 1122222100 000 11 11333332224579999999999999
Q ss_pred HHHHHHHhhcCCceEeeccccchhhhhc
Q psy7579 144 FKNYETEFENGGLTMLPIKTNLVDLVWE 171 (289)
Q Consensus 144 ~~~L~~~l~~~~~~lv~~~~~L~dliw~ 171 (289)
++.|+..++ ++++++.+..+..+|..
T Consensus 153 ~~~l~~~lp--~~~~~d~~~~l~~lR~i 178 (406)
T PRK14575 153 KRVIDAVMP--NVDFVDSSSIFNELRVI 178 (406)
T ss_pred HHHHHHhCC--CCeEEEcHHHHHHHHhc
Confidence 999998875 47899999999999983
No 6
>COG0006 PepP Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=98.59 E-value=6.1e-07 Score=86.62 Aligned_cols=132 Identities=18% Similarity=0.291 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccc--cC--eEEEEeCC-CcEEEEcCcc
Q psy7579 19 KNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTG--SA--GVAIVTTD-KALLWTDGRY 93 (289)
Q Consensus 19 ~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtG--S~--G~llVt~d-~a~L~tD~RY 93 (289)
.++..|+.+++..|.+++ +|++++++. .|++|+|||+. .. ..++++.+ +++|+++++|
T Consensus 8 ~~~~~rl~~~~~~~~~~~-----~~~~~~~~~------------~n~~yltg~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (384)
T COG0006 8 EEYRARLARLRELMEEAG-----LDALLLTSP------------SNFYYLTGFDAFGFERLQALLVPAEGEPVLFVRGRD 70 (384)
T ss_pred HHHHHHHHHHHHHHHHcC-----CcEEEecCC------------CceEEEeCCCCCcccceEEEEEcCCCceEEEEcchh
Confidence 356789999999999999 999999999 79999999994 33 34555555 4899999999
Q ss_pred HHHHhhhcCC---CeEEEecCCCCCcCHHHHHHhhCC----CCCeEEEcCCc--ccHHHHHHHHHHhhcCCceEeecccc
Q psy7579 94 HLQASQELDN---NWTLMKAGLPTTLSEKEWLVKNLP----AGSKVGVDPAL--ITFQEFKNYETEFENGGLTMLPIKTN 164 (289)
Q Consensus 94 ~~QA~~ql~~---~~~l~~~g~~~~~~~~~~L~~~l~----~~~~VG~D~~~--is~~~~~~L~~~l~~~~~~lv~~~~~ 164 (289)
..+|...... .+..+..+..... +.+.+...+. ...++|++... +++..++.+...+.. .++++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 147 (384)
T COG0006 71 EEAAKETSWIKLENVEVYEDDEDPAA-PLDLLGALLEELGLAGKRIGIESASIFLTLAAFERLQAALPR--AELVDASDL 147 (384)
T ss_pred HHHHHhhcccccCceEEEecCCcccc-HHHHHHHHHHhccccccceEEEeccCccCHHHHHHHHhhCCC--CEEeccHHH
Confidence 9999988751 3545543211111 3333333222 24689999986 899999999988864 389998888
Q ss_pred chhhhh
Q psy7579 165 LVDLVW 170 (289)
Q Consensus 165 L~dliw 170 (289)
+..+|-
T Consensus 148 i~~lR~ 153 (384)
T COG0006 148 VDRLRL 153 (384)
T ss_pred HHHHHh
Confidence 888886
No 7
>PRK14576 putative endopeptidase; Provisional
Probab=98.47 E-value=9.2e-07 Score=86.31 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeecccccc-------CeEE--EEeCCC---cEEEEcCc
Q psy7579 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGS-------AGVA--IVTTDK---ALLWTDGR 92 (289)
Q Consensus 25 L~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS-------~G~l--lVt~d~---a~L~tD~R 92 (289)
-+++|+.|+++| +|+++++++ .|++|+|||.+. .|++ +++.++ .+++++..
T Consensus 13 ~~r~r~~M~~~g-----ldalll~~p------------~ni~YlTG~~~~~~~~~r~~~~~v~v~~~d~~~p~~~i~~~~ 75 (405)
T PRK14576 13 SRKARVVMEREG-----IDALVVTVC------------DNFYYLTGFASFFMYTFRHTGAAVAIMFRDANIPSQIIMNEF 75 (405)
T ss_pred HHHHHHHHHHcC-----CCEEEeccc------------cceeeeccccccceeeeccCCeEEEEecCCCCCCcEEEechh
Confidence 357999999999 999999999 699999999965 1333 233452 36788777
Q ss_pred cHHHHhhhcC----CCeEEEec-CCCCC----------------cCHHHHHHhhC----CCCCeEEEcCCcccHHHHHHH
Q psy7579 93 YHLQASQELD----NNWTLMKA-GLPTT----------------LSEKEWLVKNL----PAGSKVGVDPALITFQEFKNY 147 (289)
Q Consensus 93 Y~~QA~~ql~----~~~~l~~~-g~~~~----------------~~~~~~L~~~l----~~~~~VG~D~~~is~~~~~~L 147 (289)
+...++.... ..+..+.. ..+.. ..+.+.+++.+ ..+++||+|...++...+..|
T Consensus 76 e~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~rigve~~~~~~~~~~~l 155 (405)
T PRK14576 76 EAASTHFDMPNSVLKTFPVWVDVDDPRNPHHHYKKRDRPIGPPVEAVFSLVKNALEDAGVLDKTIAIELQAMSNGGKGVL 155 (405)
T ss_pred hhhhhhccccccccccCCceEeecCCcccchhhhccccCCCCcHHHHHHHHHHHHHHhCCCCCEEEEccCCCCHHHHHHH
Confidence 6666642210 01112211 00100 00112233333 235799999988999999999
Q ss_pred HHHhhcCCceEeeccccchhhhhc
Q psy7579 148 ETEFENGGLTMLPIKTNLVDLVWE 171 (289)
Q Consensus 148 ~~~l~~~~~~lv~~~~~L~dliw~ 171 (289)
...++ +.++++.+..+..+|..
T Consensus 156 ~~~~~--~~~~vd~~~~l~~lR~i 177 (405)
T PRK14576 156 DKVAP--GLKLVDSTALFNEIRMI 177 (405)
T ss_pred HhhCC--CCeEEEcHHHHHHHHcC
Confidence 88774 57899998899999983
No 8
>KOG2413|consensus
Probab=95.33 E-value=0.013 Score=59.44 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccC--------eEEEEeCCCcEEEEcC
Q psy7579 20 NTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSA--------GVAIVTTDKALLWTDG 91 (289)
Q Consensus 20 ~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~--------G~llVt~d~a~L~tD~ 91 (289)
....++..||+.|++.+ .+|++|+..| .+.|+-+.+||+ .+++|+.+++.||+|+
T Consensus 173 ~~~~Kv~~LR~~l~~~~-----~~a~Vvs~Ld------------eIaWllNLRGsDipynPv~~sY~~it~dei~lfvd~ 235 (606)
T KOG2413|consen 173 SVDDKVDNLRKKLKEKK-----CDAFVVTALD------------EIAWLLNLRGSDIPYNPVFYSYAIITMDEIFLFVDN 235 (606)
T ss_pred chhHHHHHHHHHHhhcC-----CcEEehhhHH------------HHHHHHhcccCcCCCCchhhhhhhhhhhhhheeecC
Confidence 34678999999999999 9999999995 899999999996 7899999999999999
Q ss_pred -ccHHHHhhhcC-CCeEEEec
Q psy7579 92 -RYHLQASQELD-NNWTLMKA 110 (289)
Q Consensus 92 -RY~~QA~~ql~-~~~~l~~~ 110 (289)
+......+.+. .++++..+
T Consensus 236 ~k~~~~~~~~~~~~~v~i~pY 256 (606)
T KOG2413|consen 236 SKLSDESKKHLREDGVEIRPY 256 (606)
T ss_pred cccCchhHHHHhhCceeeeeH
Confidence 33444444443 35666554
No 9
>PF05195 AMP_N: Aminopeptidase P, N-terminal domain; InterPro: IPR007865 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This N-terminal domain is associated with N-terminal region of aminopeptidase P (X-Pro aminopeptidase I and II, 3.4.11.9 from EC) and related sequences. It is not found associated with methionyl aminopeptidase 1 (IPR002467 from INTERPRO) or methionyl aminopeptidase 2 (IPR002468 from INTERPRO) families. The domain is structurally very similar [] to the creatinase N-terminal domain (IPR000587 from INTERPRO), however, little or no sequence similarity exists between the two domains. The sequences belong to MEROPS peptidase family M24B, clan MG.; GO: 0004177 aminopeptidase activity, 0030145 manganese ion binding; PDB: 3IG4_B 2OKN_A 2IW2_B 1WBQ_A 2BH3_A 1WLR_A 2V3Z_A 1W2M_B 2BWT_A 2BWW_A ....
Probab=93.21 E-value=0.049 Score=45.27 Aligned_cols=69 Identities=19% Similarity=0.277 Sum_probs=39.6
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCC----CCcccCCccccceeeccccccCeEEEE-eC--CCcEEEE
Q psy7579 17 TAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAH----TSEYLADADQRRAFVSGFTGSAGVAIV-TT--DKALLWT 89 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h----~sEy~~~~~~~l~YLTGFtGS~G~llV-t~--d~a~L~t 89 (289)
+++++.+|.++|.+.|.+. .++||++.++. -.+|.=-.+.+-.||||+.-..+++++ .. ++.+||+
T Consensus 2 ~~~~~~~RR~~l~~~l~~~-------~~vil~~~~~~~~~~D~~y~FrQ~s~F~YLTG~~ep~~~lvl~~~~~~~~~LF~ 74 (134)
T PF05195_consen 2 PAEEYAERRKKLAEKLPDN-------SIVILPGGPEKYRSNDIEYPFRQDSNFYYLTGFNEPDAVLVLKDGESGKSTLFV 74 (134)
T ss_dssp EHHHHHHHHHHHHHHSHSS-------EEEEEE----EEEETTEEE-----HHHHHHH---STT-EEEEEECTTEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCC-------cEEEEECCCeeeecCCCccccccCCcEEEEeCCCCCCEEEEEecCCCCeEEEEe
Confidence 4567889999999999874 35566665543 235666677889999999988888888 33 3788998
Q ss_pred cCc
Q psy7579 90 DGR 92 (289)
Q Consensus 90 D~R 92 (289)
+.+
T Consensus 75 ~~~ 77 (134)
T PF05195_consen 75 PPK 77 (134)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 10
>PRK10879 proline aminopeptidase P II; Provisional
Probab=90.97 E-value=0.62 Score=46.16 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=48.1
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCC----CCcccCCccccceeeccccccCeEEEEeCC-----CcEEE
Q psy7579 18 AKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAH----TSEYLADADQRRAFVSGFTGSAGVAIVTTD-----KALLW 88 (289)
Q Consensus 18 ~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h----~sEy~~~~~~~l~YLTGFtGS~G~llVt~d-----~a~L~ 88 (289)
..++.+|.++|.+.|... .++||++.++. ..+|.=-.+.+-+|||||.-..+++++..+ +.+||
T Consensus 3 ~~~~~~rR~~l~~~~~~~-------~~~v~~~~~~~~~~~d~~y~Frq~s~F~YltG~~ep~~~lv~~~~~~~~~~~~Lf 75 (438)
T PRK10879 3 QQEFQRRRQALLAKMQPG-------SAALIFAAPEATRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLF 75 (438)
T ss_pred hHHHHHHHHHHHhhCCCC-------cEEEEeCCCccccCCCCCCCccCCCceeeeeCCCCCCeEEEEecCCCCCCeEEEE
Confidence 457888988888888653 35677766654 456777778899999999976666666432 24677
Q ss_pred EcCc
Q psy7579 89 TDGR 92 (289)
Q Consensus 89 tD~R 92 (289)
++.+
T Consensus 76 ~~~~ 79 (438)
T PRK10879 76 NRVR 79 (438)
T ss_pred eCCC
Confidence 7555
No 11
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=87.70 E-value=1.2 Score=41.37 Aligned_cols=71 Identities=24% Similarity=0.384 Sum_probs=49.3
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCcccc----ceeeccccccCe
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQR----RAFVSGFTGSAG 76 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~----l~YLTGFtGS~G 76 (289)
|.|++||.+++ ..|+.++.+.++++. -|.+-+--.=.+...+.....+. -.|.+|-.|-+|
T Consensus 1 mkI~SwNVNgi----------Rar~~~~~~~l~~~~-----pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~gqKgysG 65 (261)
T COG0708 1 MKIASWNVNGL----------RARLKKLLDWLEEEQ-----PDVLCLQETKAQDEQFPREELEALGYHHVFNHGQKGYSG 65 (261)
T ss_pred CeeEEEehhhH----------HHHHHHHHHHHHHhC-----CCEEEEEecccCcccCCHhHHhhCCceEEEecCcCCcce
Confidence 88999999998 578888999999998 68877754433332222222222 345677778889
Q ss_pred EEEEeCCCcE
Q psy7579 77 VAIVTTDKAL 86 (289)
Q Consensus 77 ~llVt~d~a~ 86 (289)
++++++....
T Consensus 66 Vailsr~~~~ 75 (261)
T COG0708 66 VAILSKKPPD 75 (261)
T ss_pred EEEEEccCch
Confidence 9999886543
No 12
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=85.63 E-value=1.2 Score=38.42 Aligned_cols=143 Identities=13% Similarity=0.187 Sum_probs=80.2
Q ss_pred ccHHHHHHHHHHHHHhCCC-CCCceeEEEEcCCC-CCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCc---c
Q psy7579 19 KNTTGILQKLRAIMKTNTH-VPEAIQAYIVTSQD-AHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGR---Y 93 (289)
Q Consensus 19 ~~~~~RL~~LR~~M~~~~~-~~~~iDa~iI~s~D-~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~R---Y 93 (289)
+...+||++|.+..++... .-.++||++|.... ...+.|.-.. .=-.||.||.=..-++++|+++-+++|-.. +
T Consensus 4 ~~F~~RL~~L~~~W~~~~~~~~~~~dal~i~~G~~~e~~~Y~Ks~-aLq~WLlGYEfpdTiiv~tk~~i~~ltS~KKa~~ 82 (163)
T PF14826_consen 4 ETFHKRLKRLYSSWKEHKDDLWGGADALVIAVGKADEDNPYSKST-ALQTWLLGYEFPDTIIVFTKKKIHFLTSKKKAKF 82 (163)
T ss_dssp HHHHHHHHHHHHHHHCCCHHTSTT-SEEEEEE-S--TTSTT-HHH-HHHHHHHSS--SSEEEEEETTEEEEEEEHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCccccCCCCEEEEEeCCcccCccchhHH-HHHHHHhcccHhhhhhhhcCCEEEEEeCHHHHHH
Confidence 3467899999999998741 22348999887763 2223332211 123599999988888889999888888654 3
Q ss_pred HHHHhhhc--C--CCeEEEecCCCC---CcCHHHHHHhhCC-CCCeEEEcCCc-ccHHHHHHHHHHhhcCCceEeecc
Q psy7579 94 HLQASQEL--D--NNWTLMKAGLPT---TLSEKEWLVKNLP-AGSKVGVDPAL-ITFQEFKNYETEFENGGLTMLPIK 162 (289)
Q Consensus 94 ~~QA~~ql--~--~~~~l~~~g~~~---~~~~~~~L~~~l~-~~~~VG~D~~~-is~~~~~~L~~~l~~~~~~lv~~~ 162 (289)
..+++... . ..+++......+ .....+-|.+.+. .+.+||+=..- ..-.+.+.+.+.+.+.+++.|+++
T Consensus 83 L~~l~~~~~~~~~~~v~ll~R~k~d~~~~~~~f~kl~~~ik~~g~~vG~~~Kd~~~G~f~~~w~~~l~~~~~~~vDvs 160 (163)
T PF14826_consen 83 LEPLKKPAKEGGSIPVELLVRNKKDPEKNKANFEKLIEAIKKAGKKVGVLAKDKFEGKFVDEWKEALKKSGFEKVDVS 160 (163)
T ss_dssp CCCHCCCTTTT-SSEEEEEEE-TT-HHHHHHHHHHHHHHHHCCTSEEEE-TT----SHHHHHHHHHHCHHCSEEEE-H
T ss_pred HHHHhhccccCCCceEEEEEeCCCCccchHHHHHHHHHHHHhcCCeEeEecCCCCCCchHHHHHHHHhhcCCceeecc
Confidence 44444321 1 245555433222 1223344444333 47899986643 444566777777776678888865
No 13
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=78.06 E-value=7.3 Score=35.66 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=41.2
Q ss_pred CeeeeeccCCCCCCccccccHHHHHH-HHHHHHHhCCCCCCceeEEEEcCCCCCCCcc---cCCcccccee-eccccccC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQ-KLRAIMKTNTHVPEAIQAYIVTSQDAHTSEY---LADADQRRAF-VSGFTGSA 75 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~-~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy---~~~~~~~l~Y-LTGFtGS~ 75 (289)
|.|++||.+.| ..|++ .+.+.+++++ .|.+.+.-.=....+. .+++. ..| .++-.|-+
T Consensus 1 mki~swNVNgi----------r~~~~~~~~~~l~~~~-----~DIiclQEtK~~~~~~~~~~~gY~--~~~~~~~~kgy~ 63 (250)
T PRK13911 1 MKLISWNVNGL----------RACMTKGFMDFFNSVD-----ADVFCIQESKMQQEQNTFEFKGYF--DFWNCAIKKGYS 63 (250)
T ss_pred CEEEEEEeCCh----------hHhhhhhHHHHHHhcC-----CCEEEEEeecccccccccccCCce--EEEEecccCccc
Confidence 89999999999 24453 5888999998 9998886441111111 11111 111 12333557
Q ss_pred eEEEEeCCC
Q psy7579 76 GVAIVTTDK 84 (289)
Q Consensus 76 G~llVt~d~ 84 (289)
|++++++..
T Consensus 64 GVAi~~k~~ 72 (250)
T PRK13911 64 GVVTFTKKE 72 (250)
T ss_pred eEEEEEcCC
Confidence 999998865
No 14
>PRK15173 peptidase; Provisional
Probab=72.95 E-value=5.5 Score=37.75 Aligned_cols=41 Identities=7% Similarity=0.120 Sum_probs=36.2
Q ss_pred CCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhhc
Q psy7579 129 GSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVWE 171 (289)
Q Consensus 129 ~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw~ 171 (289)
.++||+|...+++..++.|++.++ ++++++.+..+..+|+.
T Consensus 55 ~~rigve~~~~~~~~~~~l~~~l~--~~~~~d~~~~i~~lR~i 95 (323)
T PRK15173 55 NKKIAIDLNIMSNGGKRVIDAVMP--NVDFVDSSSIFNELRVI 95 (323)
T ss_pred CCEEEEecCccCHHHHHHHHhhCC--CCeEEEhHHHHHHHHcc
Confidence 468999999999999999998885 47899999999999984
No 15
>PRK11756 exonuclease III; Provisional
Probab=72.70 E-value=11 Score=34.29 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=42.9
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCc----cccceeeccccccCe
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADA----DQRRAFVSGFTGSAG 76 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~----~~~l~YLTGFtGS~G 76 (289)
|+|++||...+ ..|+.++.+.|++.+ .|.+.+.-.+-...+ .+.. ..-..++.|-.|..|
T Consensus 1 mri~T~Nv~g~----------~~~~~~i~~~i~~~~-----pDIi~LQE~~~~~~~-~~~~~~~~~gy~~~~~~~~~~~G 64 (268)
T PRK11756 1 MKFVSFNINGL----------RARPHQLEAIIEKHQ-----PDVIGLQETKVHDEM-FPLEEVEALGYHVFYHGQKGHYG 64 (268)
T ss_pred CEEEEEEcCCH----------HHHHHHHHHHHHhcC-----CCEEEEEeccccccc-CCHHHHHhcCCEEEEeCCCCCCE
Confidence 89999999875 357788999999998 899888765322211 1100 001123344456678
Q ss_pred EEEEeCC
Q psy7579 77 VAIVTTD 83 (289)
Q Consensus 77 ~llVt~d 83 (289)
++|.++.
T Consensus 65 vailSr~ 71 (268)
T PRK11756 65 VALLSKQ 71 (268)
T ss_pred EEEEECC
Confidence 8888764
No 16
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=67.63 E-value=16 Score=32.78 Aligned_cols=69 Identities=29% Similarity=0.387 Sum_probs=42.0
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCC---cccCCccccceeeccccccCeE
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTS---EYLADADQRRAFVSGFTGSAGV 77 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~s---Ey~~~~~~~l~YLTGFtGS~G~ 77 (289)
|+|++||.+.+ ..+..++.+.+++.+ .|.+.+.-.+.... ..+........|.++-.|..|+
T Consensus 1 mri~t~Ni~g~----------~~~~~~~~~~l~~~~-----~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~~g~~Gv 65 (254)
T TIGR00195 1 MKIISWNVNGL----------RARLHKGLAWLKENQ-----PDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQKGYSGV 65 (254)
T ss_pred CEEEEEEcCcH----------HHhHHHHHHHHHhcC-----CCEEEEEecccchhhCCHHHhhcCCcEEEEecCCCcceE
Confidence 89999999976 234555788898888 99998876532211 1110001112344554566788
Q ss_pred EEEeCCC
Q psy7579 78 AIVTTDK 84 (289)
Q Consensus 78 llVt~d~ 84 (289)
+|.++..
T Consensus 66 ailsr~~ 72 (254)
T TIGR00195 66 AIFSKEE 72 (254)
T ss_pred EEEEcCC
Confidence 8877743
No 17
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=59.95 E-value=20 Score=31.76 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=29.1
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHH-HHHHHhCCCCCCceeEEEEcCCCC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKL-RAIMKTNTHVPEAIQAYIVTSQDA 52 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~L-R~~M~~~~~~~~~iDa~iI~s~D~ 52 (289)
|+|++||.+.+ ..+.+++ .+.|++.+ .|.+.+.-.+.
T Consensus 1 lri~t~Nv~g~----------~~~~~~~~~~~l~~~~-----~DIv~LQE~~~ 38 (255)
T TIGR00633 1 MKIISWNVNGL----------RARLHKLFLDWLKEEQ-----PDVLCLQETKV 38 (255)
T ss_pred CEEEEEecccH----------HHHhhccHHHHHHhcC-----CCEEEEEeccC
Confidence 78999999887 2345565 88899998 99999987753
No 18
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=58.73 E-value=5.9 Score=31.19 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=34.3
Q ss_pred cchhhHHHHhhCCCCCccccCchhhhhHhhhchhhhhhcC
Q psy7579 183 TLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENG 222 (289)
Q Consensus 183 ~~s~~~w~~~~~~~~~~v~~dp~~~~~~~~~~~~~~~~~~ 222 (289)
..+..+|+.+.+..+++||+|+...++..|..+.+++.+.
T Consensus 78 ~~~~~~~l~~~~~~~~~igve~~~~~~~~~~~l~~~~~~~ 117 (132)
T PF01321_consen 78 YEAIAEALKKLGPEGKRIGVEPDSLSAAEYQRLQEALPGA 117 (132)
T ss_dssp HHHHHHHHHHHTTTTSEEEEETTTSBHHHHHHHHHHSTTS
T ss_pred cchHHHHHHHhCCCCCEEEEcCCcChHHHHHHHHHhCCCC
Confidence 4567788888888889999999999999999999888444
No 19
>PRK13607 proline dipeptidase; Provisional
Probab=44.54 E-value=65 Score=32.05 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCCCceeEEEEcCCCCCC-----CcccCCccccceeeccccc-cCeEEEEeC--C-CcEEEEc
Q psy7579 27 KLRAIMKTNTHVPEAIQAYIVTSQDAHT-----SEYLADADQRRAFVSGFTG-SAGVAIVTT--D-KALLWTD 90 (289)
Q Consensus 27 ~LR~~M~~~~~~~~~iDa~iI~s~D~h~-----sEy~~~~~~~l~YLTGFtG-S~G~llVt~--d-~a~L~tD 90 (289)
++++.|++.+ -+++|+.+..++. ++|.=-.+.+-.|+||+.- ..+++++.. + +.+||.+
T Consensus 18 r~~~~~~~~~-----~~~i~l~~g~~~~~~~~D~~~~Frq~s~F~yl~G~~~~p~~~~~i~~~~~~~~~l~~~ 85 (443)
T PRK13607 18 RTRDALAREG-----LDALLIHSGELHRVFLDDHDYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYQP 85 (443)
T ss_pred HHHHHHhccC-----CCEEEEECCCcccccCCCCCCCcCcCCCcchhcCCCCCCCeEEEEEeCCCCEEEEEec
Confidence 3445666665 7888888776653 4566667788899999963 445555532 2 4456665
No 20
>KOG2414|consensus
Probab=40.32 E-value=40 Score=33.58 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=47.3
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCC-CCCCc---ccCCccccceeeccccccCeEEEEeC-C----CcEE
Q psy7579 17 TAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQD-AHTSE---YLADADQRRAFVSGFTGSAGVAIVTT-D----KALL 87 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D-~h~sE---y~~~~~~~l~YLTGFtGS~G~llVt~-d----~a~L 87 (289)
+..++.+|..+|-+.+.++ +.+||.+.+ -|+|- |.--.|.+.+||||+.-++++++++. | ...|
T Consensus 63 s~~Ey~~RR~rl~~ll~~~-------a~~il~sap~~~msg~ipY~f~Qd~df~YLtGc~EP~~vl~l~~~d~~s~~~~l 135 (488)
T KOG2414|consen 63 SATEYKERRSRLMSLLPAN-------AMVILGSAPVKYMSGAIPYTFRQDNDFYYLTGCLEPDAVLLLLKGDERSVAYDL 135 (488)
T ss_pred cHHHHHHHHHHHHHhCCcc-------cEEEEccCchhhhcCccceeeecCCCeEEEeccCCCCeeEEEeecccccceeeE
Confidence 4457889989888888765 345555443 34554 33366789999999999999888752 2 2356
Q ss_pred EEcCcc
Q psy7579 88 WTDGRY 93 (289)
Q Consensus 88 ~tD~RY 93 (289)
|.+++.
T Consensus 136 f~p~kd 141 (488)
T KOG2414|consen 136 FMPPKD 141 (488)
T ss_pred ecCCCC
Confidence 666554
No 21
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=32.62 E-value=2e+02 Score=20.99 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEE
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWT 89 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~t 89 (289)
+-++.+|+.+...| .|+.+.|... -|....-.|-+|...++.+-|+
T Consensus 6 ~i~~~iR~~fs~lG----~I~vLYvn~~-----------------eS~~~~~~GGvV~eDgR~y~F~ 51 (62)
T PF15513_consen 6 EITAEIRQFFSQLG----EIAVLYVNPY-----------------ESDEDRLTGGVVMEDGRHYTFV 51 (62)
T ss_pred HHHHHHHHHHHhcC----cEEEEEEccc-----------------ccCCCeEeccEEEeCCCEEEEE
Confidence 34678999999999 5888877654 2333333355667677777776
No 22
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.51 E-value=71 Score=30.36 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=33.2
Q ss_pred CCCCCCCceeccccccCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy7579 242 PGVPNGTVTPLGLKYTGKTIDKKLEQVREKMNEKKATVLVLTALDEVA 289 (289)
Q Consensus 242 p~~~~~~i~~~~~~~~G~~~~~Ki~~ir~~l~~~~~~~~~~t~ld~ia 289 (289)
|..|...+.+++.. +|+.... +++...+..+.+++|+|.+|+.+
T Consensus 230 ~~~p~~~~LVl~a~-~g~~~~~---~a~~f~~~~~~~giIlTKlD~t~ 273 (318)
T PRK10416 230 PDAPHEVLLVLDAT-TGQNALS---QAKAFHEAVGLTGIILTKLDGTA 273 (318)
T ss_pred CCCCceEEEEEECC-CChHHHH---HHHHHHhhCCCCEEEEECCCCCC
Confidence 55667778888887 6765554 45666666789999999999864
No 23
>PRK11835 hypothetical protein; Provisional
Probab=26.63 E-value=30 Score=28.05 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=11.4
Q ss_pred ccceeeccccccC
Q psy7579 63 QRRAFVSGFTGSA 75 (289)
Q Consensus 63 ~~l~YLTGFtGS~ 75 (289)
++.+|++||+|+.
T Consensus 14 QsYRW~sG~~G~k 26 (114)
T PRK11835 14 QSYRWSAGFAGSK 26 (114)
T ss_pred cceeeccCccCce
Confidence 6889999999974
No 24
>PRK03094 hypothetical protein; Provisional
Probab=26.44 E-value=58 Score=24.93 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCC-C----C----CceeEEEEcCCC
Q psy7579 21 TTGILQKLRAIMKTNTH-V----P----EAIQAYIVTSQD 51 (289)
Q Consensus 21 ~~~RL~~LR~~M~~~~~-~----~----~~iDa~iI~s~D 51 (289)
..+-|..+++.|+++|| + . .++||++|+..|
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d 45 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQD 45 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCC
Confidence 34558889999999998 3 1 458888888876
No 25
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=25.54 E-value=1.3e+02 Score=21.18 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCccHHHHhhhc
Q psy7579 24 ILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQEL 101 (289)
Q Consensus 24 RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA~~ql 101 (289)
..+-++..|+++| |.+++-...+ ... .|+.|..|. .-+||+...+.+|++=+
T Consensus 11 ea~~i~~~L~~~g-----I~~~v~~~~~-----------~~~---~g~~g~~~~-------~~v~V~~~d~~~A~~il 62 (67)
T PF09413_consen 11 EAELIKGLLEENG-----IPAFVKNEHM-----------SGY---AGEPGTGGQ-------VEVYVPEEDYERAREIL 62 (67)
T ss_dssp HHHHHHHHHHHTT-------EE--S---------------SS------S--SSS-------EEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHhCC-----CcEEEECCcc-----------chh---hcccCccCc-------eEEEECHHHHHHHHHHH
Confidence 3456889999999 9998865431 111 444443332 35788888888887643
No 26
>PF13989 YejG: YejG-like protein
Probab=24.84 E-value=34 Score=27.43 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=10.6
Q ss_pred ccceeecccccc
Q psy7579 63 QRRAFVSGFTGS 74 (289)
Q Consensus 63 ~~l~YLTGFtGS 74 (289)
++.+|++||+|.
T Consensus 11 qsYRWlsG~~G~ 22 (106)
T PF13989_consen 11 QSYRWLSGFAGV 22 (106)
T ss_pred ccceeccCCcCc
Confidence 678999999986
No 27
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=24.00 E-value=14 Score=30.89 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=9.8
Q ss_pred ccceeeccccc
Q psy7579 63 QRRAFVSGFTG 73 (289)
Q Consensus 63 ~~l~YLTGFtG 73 (289)
.+..|||||+-
T Consensus 19 ~R~eyLTGFhK 29 (137)
T PF09805_consen 19 ARREYLTGFHK 29 (137)
T ss_pred HHHHHHHHHHH
Confidence 79999999983
No 28
>PRK04966 hypothetical protein; Provisional
Probab=21.23 E-value=1.7e+02 Score=21.91 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCEEEecCCCC
Q psy7579 258 GKTIDKKLEQVREKMNEKKATVLVLTALDE 287 (289)
Q Consensus 258 G~~~~~Ki~~ir~~l~~~~~~~~~~t~ld~ 287 (289)
..+..+|+++++..|+. |--.++.+.++|
T Consensus 32 E~sl~~kv~qv~~qL~~-G~~viv~se~~E 60 (72)
T PRK04966 32 ERSLEQKVADVKRQLQS-GEAVLVWSELHE 60 (72)
T ss_pred cccHHHHHHHHHHHHHc-CCEEEEECCCCC
Confidence 57899999999999975 444566666655
Done!