Query psy7579
Match_columns 289
No_of_seqs 251 out of 1652
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:02:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ctz_A XAA-Pro aminopeptidase 100.0 1.8E-45 6E-50 372.5 18.0 203 19-289 4-206 (623)
2 3qoc_A Putative metallopeptida 99.9 5.1E-27 1.7E-31 193.7 11.0 130 16-169 5-135 (135)
3 3ovk_A Aminopeptidase P, XAA-P 99.9 6.8E-24 2.3E-28 173.7 11.2 124 20-169 7-132 (132)
4 3il0_A Aminopeptidase P; XAA-P 99.9 5.7E-24 1.9E-28 172.8 9.3 124 21-170 4-129 (131)
5 3ooo_A Proline dipeptidase; st 99.9 1.6E-21 5.4E-26 159.0 11.1 123 23-169 3-132 (132)
6 3pn9_A Proline dipeptidase; st 99.9 7.1E-22 2.4E-26 161.5 8.6 126 22-170 4-136 (138)
7 3i7m_A XAA-Pro dipeptidase; st 99.9 5.7E-22 1.9E-26 163.2 7.7 126 23-170 4-139 (140)
8 3o5v_A X-Pro dipeptidase; crea 99.9 1.5E-21 5.3E-26 159.3 9.9 123 23-169 3-132 (132)
9 3q6d_A Proline dipeptidase; st 99.7 1.5E-17 5.3E-22 156.6 9.5 126 20-170 2-129 (356)
10 3biq_A FACT complex subunit SP 99.6 2.4E-16 8.1E-21 153.6 5.3 148 17-170 9-176 (467)
11 1kp0_A Creatine amidinohydrola 99.6 1.6E-15 5.5E-20 144.7 8.8 133 17-170 20-156 (402)
12 2zsg_A Aminopeptidase P, putat 99.6 6.4E-15 2.2E-19 138.4 10.6 125 23-170 2-132 (359)
13 4ege_A Dipeptidase PEPE; struc 99.5 1.3E-13 4.5E-18 131.4 10.8 131 17-170 11-149 (378)
14 4fkc_A XAA-Pro aminopeptidase; 99.3 6.2E-12 2.1E-16 119.1 10.5 129 18-170 12-149 (377)
15 3cb6_A FACT complex subunit SP 99.3 6.3E-12 2.1E-16 121.4 8.1 145 18-170 10-176 (444)
16 1wy2_A XAA-Pro dipeptidase; st 99.2 1.4E-11 4.7E-16 116.1 6.6 121 21-170 4-126 (351)
17 1chm_A Creatine amidinohydrola 99.2 1.6E-10 5.4E-15 110.5 12.5 134 17-170 19-156 (401)
18 4b28_A Metallopeptidase, famil 99.1 5.4E-11 1.9E-15 116.6 8.3 129 19-170 77-228 (470)
19 1wn1_A Dipeptidase; prolidase, 99.1 1.6E-10 5.4E-15 109.0 6.8 120 23-170 1-130 (356)
20 3ctz_A XAA-Pro aminopeptidase 98.8 1.2E-08 4.1E-13 103.1 8.5 124 19-170 176-320 (623)
21 3ig4_A XAA-Pro aminopeptidase; 98.4 2.6E-07 8.8E-12 89.5 5.2 140 16-170 1-170 (427)
22 2v3z_A XAA-Pro aminopeptidase; 98.3 5.6E-07 1.9E-11 87.1 6.7 142 17-170 4-174 (440)
23 2iw2_A XAA-Pro dipeptidase; me 96.6 0.0022 7.5E-08 62.8 5.7 77 17-94 20-103 (494)
24 3qoc_A Putative metallopeptida 91.3 0.058 2E-06 43.1 1.1 48 187-236 86-133 (135)
25 3rva_A Organophosphorus acid a 84.4 0.92 3.2E-05 43.7 4.8 67 20-91 11-84 (451)
26 4gz1_A Tyrosyl-DNA phosphodies 83.4 0.86 2.9E-05 38.1 3.7 70 1-80 10-79 (256)
27 4fva_A 5'-tyrosyl-DNA phosphod 77.6 3.3 0.00011 34.4 5.4 72 1-82 14-86 (256)
28 4f1h_A Tyrosyl-DNA phosphodies 76.2 1.5 5E-05 35.9 2.7 73 1-83 4-77 (250)
29 4b28_A Metallopeptidase, famil 75.6 0.96 3.3E-05 43.8 1.6 29 260-288 78-106 (470)
30 3l24_A XAA-Pro dipeptidase; PI 75.5 3.8 0.00013 40.2 5.9 66 20-90 11-83 (517)
31 3ovk_A Aminopeptidase P, XAA-P 73.0 0.98 3.4E-05 35.4 0.8 38 196-237 94-131 (132)
32 1wdu_A TRAS1 ORF2P; four-layer 72.2 9.3 0.00032 32.2 7.0 42 1-57 20-61 (245)
33 4gew_A 5'-tyrosyl-DNA phosphod 71.5 4.4 0.00015 37.3 5.1 73 1-83 120-193 (362)
34 3il0_A Aminopeptidase P; XAA-P 69.1 1 3.6E-05 34.8 0.2 48 186-237 78-127 (131)
35 1vyb_A ORF2 contains A reverse 66.9 16 0.00056 29.9 7.3 71 1-84 8-81 (238)
36 2jc4_A Exodeoxyribonuclease II 63.5 15 0.00053 30.5 6.5 69 1-84 1-72 (256)
37 3g91_A MTH0212, exodeoxyribonu 56.8 17 0.00058 30.8 5.7 36 1-51 4-40 (265)
38 3pn9_A Proline dipeptidase; st 48.5 5.8 0.0002 30.6 1.2 47 187-236 85-133 (138)
39 2ei9_A Non-LTR retrotransposon 46.1 12 0.00041 32.1 2.9 36 1-51 8-43 (240)
40 1ako_A Exonuclease III; AP-end 37.0 27 0.00094 29.1 3.8 38 1-53 1-38 (268)
41 2voa_A AF_EXO, XTHA, exodeoxyr 36.7 28 0.00095 29.0 3.7 36 1-51 2-37 (257)
42 2jc5_A Exodeoxyribonuclease; h 35.8 65 0.0022 26.5 6.0 38 1-53 2-40 (259)
43 1kp0_A Creatine amidinohydrola 31.2 7 0.00024 36.2 -1.1 51 185-238 105-155 (402)
44 3l1w_A Uncharacterized protein 27.9 58 0.002 27.0 4.3 51 1-57 1-51 (257)
45 3twe_A Alpha4H; unknown functi 20.8 66 0.0022 18.2 2.1 15 20-34 12-26 (27)
46 2o3h_A DNA-(apurinic or apyrim 20.1 1.6E+02 0.0055 24.7 5.7 38 1-53 29-67 (285)
No 1
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=372.52 Aligned_cols=203 Identities=49% Similarity=0.839 Sum_probs=186.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCccHHHHh
Q psy7579 19 KNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQAS 98 (289)
Q Consensus 19 ~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA~ 98 (289)
..+.+||++||+.|++++...+++||||||+.|+|+||||+++++|++||||||||+|++|||+++|+|||||||+.||+
T Consensus 4 ~~~~~Rl~~LR~~m~~~~~~~~~lda~lv~~~D~h~sey~~~~~~~~~ylsGFtGSaG~~vVt~~~a~l~tDgRY~~QA~ 83 (623)
T 3ctz_A 4 KVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAA 83 (623)
T ss_dssp BCCHHHHHHHHHHTTCTTTCSSCCSEEEECSCCTTCCSSCCGGGCHHHHHHSCCSSCCEEEEESSCEEEEECGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCceeEEEECCCCccccccccchhccceeccCcCCCceEEEEecCeeEEEECcHHHHHHH
Confidence 44578999999999988633344999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhhcCCCCCCC
Q psy7579 99 QELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVPN 178 (289)
Q Consensus 99 ~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw~~~p~~~~ 178 (289)
+|++++|++++.+.++.+++.+||.++++.+++||||++++|+..|++|++.|...++++++
T Consensus 84 ~ql~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~vG~d~~~~s~~~~~~l~~~l~~~~~~lv~------------------ 145 (623)
T 3ctz_A 84 KQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIP------------------ 145 (623)
T ss_dssp HHBCTTEEEEETTSTTCCCHHHHHHHHCCTTCEEEECGGGSBHHHHHHHHHHHHHTTCEEEE------------------
T ss_pred HhcCCceEEEEecCCCCccHHHHHHHhCcCCCEEEECcccccHHHHHHHHHHHHhcCCEEEe------------------
Confidence 99976799998776567789999999988889999999999999999999988655566665
Q ss_pred CCCCcchhhHHHHhhCCCCCccccCchhhhhHhhhchhhhhhcCCccccCCCCChhhhhccCCCCCCCCCceeccccccC
Q psy7579 179 GLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVPNGTVTPLGLKYTG 258 (289)
Q Consensus 179 ~~~~~~s~~~w~~~~~~~~~~v~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~nlvd~~w~~rp~~~~~~i~~~~~~~~G 258 (289)
+..||||.+|++||..|..+++.++.+|+|
T Consensus 146 --------------------------------------------------~~~~lvd~iw~~Rp~k~~~e~~~~~~~~ag 175 (623)
T 3ctz_A 146 --------------------------------------------------VKENLVDKIWTDRPERPCKPLLTLGLDYTG 175 (623)
T ss_dssp --------------------------------------------------CSSCHHHHHCTTCCCCCCCCCEECCHHHHS
T ss_pred --------------------------------------------------cCCCcHHHHhhcCCCCCchhhhhcchhhcC
Confidence 667999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCEEEecCCCCCC
Q psy7579 259 KTIDKKLEQVREKMNEKKATVLVLTALDEVA 289 (289)
Q Consensus 259 ~~~~~Ki~~ir~~l~~~~~~~~~~t~ld~ia 289 (289)
++..+|+++||+.|.++++|++|||++|+|+
T Consensus 176 ~~~~~rl~~lr~~m~e~~~dallit~~~~i~ 206 (623)
T 3ctz_A 176 ISWKDKVADLRLKMAERNVMWFVVTALDEIA 206 (623)
T ss_dssp SCHHHHHHHHHHHHHTTTEEEEEECCHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 9999999999999999999999999999874
No 2
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae}
Probab=99.94 E-value=5.1e-27 Score=193.66 Aligned_cols=130 Identities=20% Similarity=0.317 Sum_probs=112.1
Q ss_pred cccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEe-CCCcEEEEcCccH
Q psy7579 16 ATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVT-TDKALLWTDGRYH 94 (289)
Q Consensus 16 ~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt-~d~a~L~tD~RY~ 94 (289)
|+..++.+|+++||+.|+++| +||+||+++ .|++|||||+||+|+++|+ .++++||||+||+
T Consensus 5 ~~~~~~~~Rl~~l~~~m~~~~-----~da~li~~~------------~n~~yltGf~~s~g~lvv~~~~~a~l~td~Ry~ 67 (135)
T 3qoc_A 5 LADTRFLQRRRALSAQLAAKR-----IDAMLVTHL------------THIRYLSGFTGSNAALIINKDLSARISTDGRYI 67 (135)
T ss_dssp CCCCHHHHHHHHHHHTHHHHT-----CSEEEECCH------------HHHHHHHCCCSSCCEEEEETTSCEEEEECGGGH
T ss_pred cChHHHHHHHHHHHHHHHHCC-----CCEEEEcCh------------hhCeeeecccCCCeEEEEeeCCccEEEeCcHHH
Confidence 455788999999999999999 999999877 7999999999999999999 8899999999999
Q ss_pred HHHhhhcCCCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhh
Q psy7579 95 LQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 169 (289)
Q Consensus 95 ~QA~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dli 169 (289)
+||++|++ +++++..+ ++.+||.+.+..+++||||++.+|+..|++|++.++. +++++++++.|..+|
T Consensus 68 ~qA~~~~~-~~~i~~~~-----~~~~~l~~~~~~~~~vG~e~~~ls~~~~~~L~~~l~~-~~~lv~~~~~v~~lR 135 (135)
T 3qoc_A 68 TQIAEQVP-DIESLMAR-----NCAPALLSDINGPKRVGFEADYLSVSQCEELRKSAGS-DVELIPVTGAIEKLR 135 (135)
T ss_dssp HHHHHHCT-TSEEEECS-----SHHHHHHHTCCSSEEEEEETTTSBHHHHHHHHHHSCT-TEEEEEECSCC----
T ss_pred HHHHHhCC-CcEEEEeC-----cHHHHHHhcCcCCCeEEECCCcccHHHHHHHHHhccC-CcEEEECccHHHHhC
Confidence 99999987 58888752 4678998876667899999999999999999998853 378999888877664
No 3
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes}
Probab=99.90 E-value=6.8e-24 Score=173.67 Aligned_cols=124 Identities=20% Similarity=0.368 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCccHHHHhh
Q psy7579 20 NTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQ 99 (289)
Q Consensus 20 ~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA~~ 99 (289)
.+.+|+++||+.|+++| +||+||+++ .|++|||||+|++|++||+.++++||||+||++||++
T Consensus 7 ~~~~Rl~~l~~~m~~~~-----~da~li~~~------------~n~~YltGf~~~~~~~vv~~~~~~l~td~ry~~qa~~ 69 (132)
T 3ovk_A 7 FLEQRLGHCLRQMAEKG-----LEALLVTHL------------TNSYYLTGFSGTAATVLITAKRRVLITDSRYTLLAKA 69 (132)
T ss_dssp HHHHHHHHHHHHHHHHT-----CCEEEECSH------------HHHHHHHCCCCSCCEEEEESSCEEEEECTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-----CCEEEEcCc------------ccceeeeCccCCCEEEEEECCccEEEECchhHHHHHH
Confidence 46799999999999999 999999998 7999999999999999999999999999999999999
Q ss_pred hcCCCeEEEecCCCCCcCHHHHHHhhCC--CCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhh
Q psy7579 100 ELDNNWTLMKAGLPTTLSEKEWLVKNLP--AGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 169 (289)
Q Consensus 100 ql~~~~~l~~~g~~~~~~~~~~L~~~l~--~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dli 169 (289)
|+++ ++++..+ +..+++.+.+. .+++||||+. +|+..|+.|++.++ +++++++++.+..+|
T Consensus 70 ~~~~-~~v~~~~-----~~~~~l~~~l~~~~~~~ig~e~~-~~~~~~~~L~~~l~--~~~~v~~~~~v~~lR 132 (132)
T 3ovk_A 70 SVEG-FDIIESR-----TPLKVVAELLEADQIDCLGFEDQ-VSFSFYQAMQAELS--GITLLAQSGFVEHLR 132 (132)
T ss_dssp HCTT-CEEEECS-----CHHHHHHHHHHHHTCCEEEEETT-SBHHHHHHHHHHCT--TCEEEEESSTTGGGC
T ss_pred hCCC-cEEEEeC-----CCHHHHHHHHHHcCCCEEEEcCC-CCHHHHHHHHhhCC--CCeEEECchHHHHhC
Confidence 9874 7787653 22245554443 3679999999 99999999999885 578999887777654
No 4
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Probab=99.90 E-value=5.7e-24 Score=172.78 Aligned_cols=124 Identities=23% Similarity=0.419 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCccHHHHhhh
Q psy7579 21 TTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQE 100 (289)
Q Consensus 21 ~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA~~q 100 (289)
|.+|+++||+.|+++| +||+||+++ .|++|||||+|++|+++|+.++++||||+||++||+++
T Consensus 4 ~~~Rl~~lr~~m~~~~-----~da~li~~~------------~ni~YltGf~~~~~~llv~~~~~~l~~d~r~~~~a~~~ 66 (131)
T 3il0_A 4 MQRRLERFDAKLVQSG-----LDALLVTGQ------------NNIYYLTDFWGTNATVFITKNRRLFLTDSRYTLIAKQS 66 (131)
T ss_dssp GGGHHHHHHHHHHHHT-----CSEEEECSH------------HHHHHHHSCCCSSEEEEEESSCEEEEECTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-----CCEEEEecc------------cccEEEeCcccCCeEEEEECCCCEEEECchhHHHHHHh
Confidence 5689999999999999 999999998 79999999999999999999999999999999999999
Q ss_pred cCCCeEEEecCCCCCcCHHHHHHhhCCCC--CeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 101 LDNNWTLMKAGLPTTLSEKEWLVKNLPAG--SKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 101 l~~~~~l~~~g~~~~~~~~~~L~~~l~~~--~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
+. +++++.. +++.+++++.+++. ++||||+. +|+..|+.|++.++ ++++++.++.+..+|.
T Consensus 67 ~~-~~~v~~~-----~~~~~~l~~~l~~~~~~~ig~e~~-~~~~~~~~L~~~~~--~~~~v~~~~~v~~lR~ 129 (131)
T 3il0_A 67 VH-GFDIIES-----KDPLKDIVKFVEVDKLETIGFDNQ-VSFAYYQALQAIFE--GYTLSPQTNFMEELRM 129 (131)
T ss_dssp CC-SSEEEEC-----SCHHHHHHHHHHHTTCCEEEEETT-SCHHHHHHHHHHTT--TSEEEEESSHHHHHHC
T ss_pred CC-CcEEEEe-----CCHHHHHHHHHHhcCCCEEEEcCC-CCHHHHHHHHhhcC--CCEEEECchHHHHhcc
Confidence 86 4677765 35678887765433 78999999 99999999999884 5789998888877765
No 5
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=99.86 E-value=1.6e-21 Score=159.04 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCe----EEEEeCC-CcEEEEcCccHHHH
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAG----VAIVTTD-KALLWTDGRYHLQA 97 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G----~llVt~d-~a~L~tD~RY~~QA 97 (289)
+|+++||+.|+++| +||+||+++ .|++|||||+|++| +++|+.+ +++||||+||..||
T Consensus 3 ~Rl~~l~~~m~~~g-----lDa~li~~~------------~ni~YlTGf~~~~~er~~~l~v~~~g~~~l~~~~~y~~~a 65 (132)
T 3ooo_A 3 SKLNRIRHHLHSVQ-----AELAVFSDP------------VTVNYLTGFFCDPHERQMFLFVYEDRDPILFVPALEVSRA 65 (132)
T ss_dssp HHHHHHHHHHHHTT-----CSEEEECCH------------HHHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGHHHH
T ss_pred hHHHHHHHHHHHCC-----CCEEEEcCc------------chHHHHhCCCCCCCcceEEEEEeCCCCEEEEEeccchHHH
Confidence 69999999999999 999999998 89999999999987 8889877 69999999999999
Q ss_pred hhhcCCCeEEEecCCCCCcCHHHHHHhhCCCC--CeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhh
Q psy7579 98 SQELDNNWTLMKAGLPTTLSEKEWLVKNLPAG--SKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 169 (289)
Q Consensus 98 ~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~--~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dli 169 (289)
++++ .++++.+. +.+++.++|++.+.+. ++||||++.+|+..|+.|++.++ +++++.+..|..+|
T Consensus 66 ~~~~--~~~v~~~~--d~~~~~~~l~~~l~~~~~~~ig~e~~~~~~~~~~~L~~~~~---~~~~~~~~~v~~lR 132 (132)
T 3ooo_A 66 KQSV--PFPVFGYI--DSENPWQKIASNLPSFSVSKVLAEFDNLNVTKFQGLQTVFD---GHFENLTPYIQNMR 132 (132)
T ss_dssp HHHC--SSCEEEEC--TTSCHHHHHHHHCSCCCCSEEEECTTTCCHHHHHHHHHHCC---SEEEECCHHHHTTC
T ss_pred HhcC--CCcEEEEe--CCCCHHHHHHHHHhhccCCeEEEecCCcCHHHHHHHHHhCC---cceechHHHHHhcC
Confidence 9987 23444332 2356789999888753 58999999999999999999874 68999887777654
No 6
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=99.86 E-value=7.1e-22 Score=161.50 Aligned_cols=126 Identities=14% Similarity=0.219 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCe----EEEEeCC-CcEEEEcCccHHH
Q psy7579 22 TGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAG----VAIVTTD-KALLWTDGRYHLQ 96 (289)
Q Consensus 22 ~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G----~llVt~d-~a~L~tD~RY~~Q 96 (289)
++||++||+.|+++| +||+||+++ .|++|||||+|++| +++|+.+ +++||||+||..|
T Consensus 4 ~~Rl~~lr~~m~~~~-----~da~li~~~------------~ni~yltGf~g~~~er~~~lli~~~g~~~l~~d~~~~~~ 66 (138)
T 3pn9_A 4 MSKLQQILTYLESEK-----LDVAVVSDP------------VTINYLTGFYSDPHERQMFLFVLADQEPLLFVPALEVER 66 (138)
T ss_dssp CCHHHHHHHHHHHHT-----CSEEEECCH------------HHHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGHHH
T ss_pred HHHHHHHHHHHHHCC-----CCEEEEcCc------------CceeeecCCCCCCccceEEEEEeCCCCEEEEEeccchhh
Confidence 469999999999999 999999998 79999999999986 8999988 8999999999999
Q ss_pred HhhhcCCCeEEEecCCCCCcCHHHHHHhhCCC--CCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 97 ASQELDNNWTLMKAGLPTTLSEKEWLVKNLPA--GSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 97 A~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~--~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
|+ ++. .++++.+. +..++.+++.+.+.. .++||||+..+|+..|+.|++.++ ++++++.++.+..+|.
T Consensus 67 a~-~~~-~~~v~~~~--~~~~~~~~l~~~l~~~~~~~vg~e~~~~~~~~~~~l~~~~~--~~~~v~~~~~i~~lR~ 136 (138)
T 3pn9_A 67 AS-STV-SFPVVGYV--DSENPWQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFE--TAEFDNLTPRIQRMRL 136 (138)
T ss_dssp HH-HHC-SSCEEEEC--TTSCHHHHHHHHSCCCCCCEEEECTTTCCHHHHHHHHHHST--TCEEEECHHHHHHHTT
T ss_pred hh-ccC-CCcEEEEc--CCCCHHHHHHHHHHhccCCeEEEecCcCCHHHHHHHHHHCC--CCeeeehHHHHHHHhh
Confidence 99 765 34454432 224678899888865 468999999999999999999885 4789998888877765
No 7
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=99.85 E-value=5.7e-22 Score=163.24 Aligned_cols=126 Identities=6% Similarity=0.105 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCe----EEEEeCC-CcEEEEcCccHHHH
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAG----VAIVTTD-KALLWTDGRYHLQA 97 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G----~llVt~d-~a~L~tD~RY~~QA 97 (289)
+|+++||+.|+++| +||+||+++ .|++|||||+|++| +++|+.+ +++||||+||..||
T Consensus 4 ~Rl~~l~~~m~~~g-----lDa~li~~~------------~ni~YlTGf~~~~~er~~~llv~~~g~~~l~~~~~~~~~a 66 (140)
T 3i7m_A 4 TKLEQIQQWTAQHH-----ASMTYLSNP------------KTIEYLTGFGSDPIERVLALVVFPDQDPFIFAPALEVEVI 66 (140)
T ss_dssp CHHHHHHHHHHHTT-----CSEEEECCH------------HHHHHHHCCCCCCCSSCCEEEECSSSCCEEEEEGGGHHHH
T ss_pred hHHHHHHHHHHHcC-----CCEEEECCC------------CcceeecCCCCCCccceEEEEEeCCCCEEEEEecccHHHH
Confidence 39999999999999 999999998 89999999999987 8889886 79999999999999
Q ss_pred hhhcCCCeEEEecCCCCCcCHHHHHHhhCC----CCCeEEEcCCcccHHHHHHHHHHhhcCCceEe-eccccchhhhh
Q psy7579 98 SQELDNNWTLMKAGLPTTLSEKEWLVKNLP----AGSKVGVDPALITFQEFKNYETEFENGGLTML-PIKTNLVDLVW 170 (289)
Q Consensus 98 ~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~----~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv-~~~~~L~dliw 170 (289)
++++.. .++..+. +.+++.+++++.++ ..++||||.+.+|+..|+.|++.++ +++++ +++..|..+|.
T Consensus 67 ~~~~~~-~~i~~~~--d~~~~~~~l~~~l~~~~~~~~~ig~e~~~~~~~~~~~L~~~l~--~~~~v~~~~~~i~~lR~ 139 (140)
T 3i7m_A 67 KETGWQ-FPVIGYL--DHENPWAMIADQVKQRHVNPEHVAIEKGQLQVARMEALAAQFS--APSFDLDITSFIEHMRG 139 (140)
T ss_dssp HTTTCC-SCEEEEC--TTSCHHHHHHHHHHHTTCCCSEEEECTTTSCHHHHHHHHTTSS--SCEEEEECHHHHHHC--
T ss_pred HhccCc-CcEEEEc--CCCCHHHHHHHHHHHhCCCCCeEEEccCCCCHHHHHHHHHHCC--CCEEecCHHHHHHHHHc
Confidence 998752 2333321 12456666665543 3479999999999999999998875 47899 98888877763
No 8
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=99.85 E-value=1.5e-21 Score=159.27 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCe----EEEEeCC-CcEEEEcCccHHHH
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAG----VAIVTTD-KALLWTDGRYHLQA 97 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G----~llVt~d-~a~L~tD~RY~~QA 97 (289)
+|+++||+.|+++| +||+||+++ .|++|||||+|++| +++|+.+ +++||||+||..||
T Consensus 3 ~Rl~~l~~~m~~~g-----lDa~li~~~------------~ni~YltGf~~~~~er~~~l~v~~~g~~~l~~~~~y~~~a 65 (132)
T 3o5v_A 3 AKLDQIRLYLDQKG-----AELAIFSDP------------VTINYLTGFFCDPHERQLFLFVYHDLAPVLFVPALEVARA 65 (132)
T ss_dssp HHHHHHHHHHHHTT-----CCEEEECCH------------HHHHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGGHHHH
T ss_pred HHHHHHHHHHHHCC-----CCEEEEcCc------------chhhHhhCCCCCCccceEEEEEeCCCCEEEEeehhhhHHH
Confidence 69999999999999 999999998 79999999999986 8999987 79999999999999
Q ss_pred hhhcCCCeEEEecCCCCCcCHHHHHHhhCCCC--CeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhh
Q psy7579 98 SQELDNNWTLMKAGLPTTLSEKEWLVKNLPAG--SKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 169 (289)
Q Consensus 98 ~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~--~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dli 169 (289)
++++. .++..+. +.+++.++|++.+++. ++||||++.+|+..|+.|++.++ +++++.+..|..+|
T Consensus 66 ~~~~~--~~i~~~~--d~~~~~~~l~~~l~~~~~~~ig~e~~~~~~~~~~~L~~~~~---~~~~~~~~~v~~lR 132 (132)
T 3o5v_A 66 SQAIS--FPVFGYV--DSENPWEKIKAVLPNTAAKTIYAEFDHLNVNKFHGLQTIFS---GQFNNLTPYVQGMR 132 (132)
T ss_dssp HHHCC--SCEEEEC--TTSCHHHHHHHHCSCCCCSEEEECTTTCCHHHHHHHHTTCC---SEEEECHHHHHTC-
T ss_pred HhcCC--CcEEEEE--CCCCHHHHHHHHHhhccCCeEEEecCCCCHHHHHHHHHhCC---CceeccHHHHHHhC
Confidence 99873 3444331 2356788999888753 58999999999999999998773 68898887776654
No 9
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis}
Probab=99.71 E-value=1.5e-17 Score=156.55 Aligned_cols=126 Identities=21% Similarity=0.382 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCccHHHHhh
Q psy7579 20 NTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQ 99 (289)
Q Consensus 20 ~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA~~ 99 (289)
++.+||++||+.|+++| +||+||+++ .|++|||||+|++|+++|+.++++||||+||..||++
T Consensus 2 ~~~~Rl~~lr~~m~~~g-----iDa~lI~~~------------~ni~YLtGf~g~~~~llvt~~~~~l~~d~r~~~~a~~ 64 (356)
T 3q6d_A 2 NAMEKIERLRSAFDEAG-----IDGILLTNE------------HSRRYMANFTGTAGVVLISKKRAQFITDFRYVEQASK 64 (356)
T ss_dssp CHHHHHHHHHTTHHHHT-----CSEEEECCH------------HHHHHHHCCCSSSCEEEEESSCEEEEECGGGHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC-----CCEEEECCh------------hhceEccCCCCCCeEEEEECCCeEEEEChhhHHHHHh
Confidence 57899999999999999 999999998 6999999999999999999999999999999999999
Q ss_pred hcCCCeEEEecCCCCCcCHHHHHHhhCC--CCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 100 ELDNNWTLMKAGLPTTLSEKEWLVKNLP--AGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 100 ql~~~~~l~~~g~~~~~~~~~~L~~~l~--~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
++. .++++... .++.++|.+.+. ..++||||++.+|+..|+.|++.++ + ++++.+..+..+|.
T Consensus 65 ~~~-~~~v~~~~----~~~~~~l~~~l~~~~~~~igve~~~~~~~~~~~l~~~~~--~-~~~~~~~~~~~~R~ 129 (356)
T 3q6d_A 65 QAV-GYEIVQHA----GLIIDEVAKQVKELGIQKLGFEQDTLTYSSYSAHKEAID--A-EFIPTSGLVEKLRL 129 (356)
T ss_dssp HST-TSEEEECS----SCHHHHHHHHHHHHTCSEEEEETTTSBHHHHHHHHHHCC--S-EEEEECSHHHHHHT
T ss_pred hCC-CCEEEEeC----CCHHHHHHHHHHhcCCceEEEcCccCCHHHHHHHhhhcc--c-ceecchhhhhhhcc
Confidence 876 36666542 245555555443 3578999999999999999998875 3 78999888888887
No 10
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A*
Probab=99.61 E-value=2.4e-16 Score=153.59 Aligned_cols=148 Identities=9% Similarity=0.100 Sum_probs=117.0
Q ss_pred ccccHHHHHHHHHHHHH--hCCCCCCceeEEEEcCCCCC-CCcccCCccccceeeccccccCeEEEEeCCCcEEEEcCc-
Q psy7579 17 TAKNTTGILQKLRAIMK--TNTHVPEAIQAYIVTSQDAH-TSEYLADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGR- 92 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~--~~~~~~~~iDa~iI~s~D~h-~sEy~~~~~~~l~YLTGFtGS~G~llVt~d~a~L~tD~R- 92 (289)
+..++.+||++||+.|+ +++ +||+||++.|+| .|+|+ .++.+++|||||+++.|+++|+.++++||||+|
T Consensus 9 ~~~~~~~Rl~~Lr~~m~~~~~g-----iDa~li~~~~~~~~~~y~-~~~~~~~yLtGf~~~~~~lvVt~d~~~L~~d~~~ 82 (467)
T 3biq_A 9 DFDVFKKRIELLYSKYNEFEGS-----PNSLLFVLGSSNAENPYQ-KTTILHNWLLSYEFPATLIALVPGKVIIITSSAK 82 (467)
T ss_dssp CHHHHHHHHHHHHHHGGGSTTC-----CSEEEEEECSCCTTSTTC-HHHHHHHHHHSSCCSSEEEEEETTEEEEEEEHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcC-----CCEEEEEcCCCCCCCCCc-cchhhhhHhhCCCCCCEEEEEECCeEEEEECCcc
Confidence 34678899999999999 999 999999999998 69999 899999999999999999999999999999999
Q ss_pred --cHHHHhh--hcC--C-CeEEEec--CCCC-CcCHHHHHHhhCCC-CCeEEEc-CCcccHHHHHHHHHHhhc----CCc
Q psy7579 93 --YHLQASQ--ELD--N-NWTLMKA--GLPT-TLSEKEWLVKNLPA-GSKVGVD-PALITFQEFKNYETEFEN----GGL 156 (289)
Q Consensus 93 --Y~~QA~~--ql~--~-~~~l~~~--g~~~-~~~~~~~L~~~l~~-~~~VG~D-~~~is~~~~~~L~~~l~~----~~~ 156 (289)
|+.||++ |+. . .++++.. ...+ .+++.++|.+.++. +++||++ +..++...++.|++.+.. .++
T Consensus 83 ~~y~~~a~~~~e~~~~~~~v~v~~~~~~~~~~~~~~~~~L~~~L~~~~~~Igv~~~~~~s~~~~~~L~~~l~~~~~~~~~ 162 (467)
T 3biq_A 83 AKHLQKAIDLFKDPESKITLELWQRNNKEPELNKKLFDDVIALINSAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEF 162 (467)
T ss_dssp HHHHHHHHGGGCC--CCCEEEEEEECTTCHHHHHHHHHHHHHHHHHHCSEEEECTTCCCCSHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHhhhcccccCCCCeEEEEecccccccchhhHHHHHHHHHhhCCEEEEecCcccchhHHHHHHHHHHhhcccCCc
Confidence 7889988 654 2 4666654 1110 11345677666542 5689995 678899999999888743 257
Q ss_pred eEeeccccchhhhh
Q psy7579 157 TMLPIKTNLVDLVW 170 (289)
Q Consensus 157 ~lv~~~~~L~dliw 170 (289)
++++.+..+..++.
T Consensus 163 ~lv~~~~~i~~lr~ 176 (467)
T 3biq_A 163 NVIDISLGLSKVWE 176 (467)
T ss_dssp EEEECHHHHHHHTC
T ss_pred eeechHHHHHHHHc
Confidence 89988766666665
No 11
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Probab=99.59 E-value=1.6e-15 Score=144.66 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=108.6
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccC----eEEEEeCCCcEEEEcCc
Q psy7579 17 TAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSA----GVAIVTTDKALLWTDGR 92 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~----G~llVt~d~a~L~tD~R 92 (289)
+..++.+|+++||+.|++++ +||+||+++ .|++|+|||+|+. ++++|+.++++||||+|
T Consensus 20 ~~~e~~~Rl~~Lr~~m~~~~-----lDa~li~~~------------~ni~yltgf~~s~~~~p~~llV~~~~~~l~~~~~ 82 (402)
T 1kp0_A 20 SZAEMTRRZBRLRAWMAKSB-----IDAVLFTSY------------HNINYYSGWLYCYFGRKYAZVIBZVKAVTISKGI 82 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-----CSEEEECSH------------HHHHHHHSCCCCCTTCCCEEEECSSCEEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHHHCC-----CCEEEEcCC------------CCceEecCCCCCCCCceEEEEEeCCCCEEEeccc
Confidence 45678999999999999999 999999987 6899999999863 78999999999999999
Q ss_pred cHHHHhhhcCCCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 93 YHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 93 Y~~QA~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
|..||.+++.. ..+...... .+++.++|.+.++..++||+|+..+++..++.|++.++ +.++++.+..+..+|.
T Consensus 83 ~~~~a~~~~~~-~~v~~~~~~-~~~~~~~l~~~l~~~~~igvd~~~~~~~~~~~l~~~l~--~~~~v~~~~~i~~lR~ 156 (402)
T 1kp0_A 83 DGGMPWRRSFG-BNIVYTDWK-RDNFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZKALP--GTEFVDVGZPVMWZRV 156 (402)
T ss_dssp GTTHHHHHCSS-EEEEECSSS-TTHHHHHHHHHHTTCSEEEECTTTCBHHHHHHHHHHST--TCEEEECHHHHHHHHT
T ss_pred hhhhhHHhccC-cceEecccc-ccCHHHHHHHHhccCCEEEEecCCCCHHHHHHHHHhCC--CCEEEECHHHHHHHHH
Confidence 99998777653 222211111 23467888887766789999999999999999998774 4689998888888776
No 12
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Probab=99.57 E-value=6.4e-15 Score=138.37 Aligned_cols=125 Identities=19% Similarity=0.351 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccc-----eeeccccccCeEEEEeCCCcEEEEcCccHHHH
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRR-----AFVSGFTGSAGVAIVTTDKALLWTDGRYHLQA 97 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l-----~YLTGFtGS~G~llVt~d~a~L~tD~RY~~QA 97 (289)
+|+++||+.|++++ +||+||+++ .++ +|||||+|++|+++|+.++++||||+||..||
T Consensus 2 ~Rl~~Lr~~m~~~~-----lDa~li~~~------------~ni~~~~~~YLtGf~~~~~~llI~~~~~~L~~d~r~~~~a 64 (359)
T 2zsg_A 2 DRSERLIQLISEEG-----IDAFLIMNI------------ENSARASSVYFSGFTGSFSIILISENTRLLITDSRYTVQA 64 (359)
T ss_dssp CCHHHHHHHHHTTT-----CCEEEEEES------------TTTTHHHHHHHHCCCSSCEEEEEETTEEEEEECTTTHHHH
T ss_pred hHHHHHHHHHHHCC-----CcEEEEECh------------hHcccccCeeEeccCCCCEEEEEECCCCEEEECcccHHHH
Confidence 48999999999999 999999998 467 99999999999999999999999999999999
Q ss_pred hhhcCCCeEEEec-CCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 98 SQELDNNWTLMKA-GLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 98 ~~ql~~~~~l~~~-g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
+++ . .++++.. .....+.+.++|.+. ..++||+|+..+++..++.|++.++ +.++++.+..+..+|.
T Consensus 65 ~~~-~-~~~v~~~~~~~~~~~l~~~L~~~--~~~~vgvd~~~~~~~~~~~l~~~l~--~~~~v~~~~~i~~lr~ 132 (359)
T 2zsg_A 65 KQE-T-DFEVREVKGGDFIDVLKKTVNDL--KIKTIALEEERVSLSLFRRISSAFG--DRKFIGIDDEVKQMRM 132 (359)
T ss_dssp HHH-C-CSEEEEC---CCHHHHHHHHHHT--TCCEEEECGGGSBHHHHHHHHHHTT--TCEEEECHHHHHHHHH
T ss_pred HhC-C-CCEEEEecCcchHHHHHHHHHhc--CCCEEEEeCCcCCHHHHHHHHhhCC--CcEEEEChhhhhhhhc
Confidence 888 4 5677654 210112233444432 2468999999999999999988774 3689998888888887
No 13
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans}
Probab=99.47 E-value=1.3e-13 Score=131.38 Aligned_cols=131 Identities=7% Similarity=-0.008 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccC----eEEEEeCC-CcEEEEcC
Q psy7579 17 TAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSA----GVAIVTTD-KALLWTDG 91 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~----G~llVt~d-~a~L~tD~ 91 (289)
+..++.+|+++||+.|+++| +||+||+++ .|++|||||+++. ++++|+.+ +++|+||.
T Consensus 11 ~~~e~~~R~~~l~~~m~~~g-----~da~li~~~------------~ni~YltG~~~~~~~r~~~l~v~~~g~~~l~~~~ 73 (378)
T 4ege_A 11 DTAVYARRLAAAAAATEQAG-----LAGLVITPG------------YDLRYLIGSRADTFERLTALVLPASGVPTIVLPR 73 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-----CSEEEECSS------------HHHHHHHCCCCCCSSSCCEEEEESSSCCEEEEEG
T ss_pred CHHHHHHHHHHHHHHHHHcC-----CCEEEECCc------------chhHHhhCCCCCCCcceEEEEEEeCCcEEEEECh
Confidence 45688999999999999999 999999998 7999999999975 78889876 68999999
Q ss_pred ccHHHHhhhc-C-CCeEEEecCCCCCcCHHHHHHhhCCCC-CeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhh
Q psy7579 92 RYHLQASQEL-D-NNWTLMKAGLPTTLSEKEWLVKNLPAG-SKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDL 168 (289)
Q Consensus 92 RY~~QA~~ql-~-~~~~l~~~g~~~~~~~~~~L~~~l~~~-~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dl 168 (289)
+|..+++++. . ..++++... +..++.+.+.+.+... ++||+| ..+++..+..|++.+ +.++++.+..+..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~igve-~~~~~~~~~~l~~~~---~~~~~~~~~~i~~~ 147 (378)
T 4ege_A 74 LELASLKESAASDLGVCVRDWV--DGDDPYQLVAVALGGAPAATAVT-DSMPALHLLPLADAL---GVLPVLATDVLRQL 147 (378)
T ss_dssp GGGGGGGTSSTTTTTCEEEEEC--TTSCHHHHHHHHTTSSSCCEEEC-TTCCHHHHHHHHHHH---TSCCEESHHHHHHH
T ss_pred hhHHHHHhcccCCCCeEEEEec--CCCCHHHHHHHHHhcCCCEEEEc-CCCcHHHHHHHHHHc---CCeEEEcHHHHHHH
Confidence 9999998873 2 345665432 2345677888877654 689999 678999999999987 46789998888888
Q ss_pred hh
Q psy7579 169 VW 170 (289)
Q Consensus 169 iw 170 (289)
|.
T Consensus 148 R~ 149 (378)
T 4ege_A 148 RM 149 (378)
T ss_dssp HT
T ss_pred HH
Confidence 87
No 14
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus}
Probab=99.31 E-value=6.2e-12 Score=119.06 Aligned_cols=129 Identities=15% Similarity=0.214 Sum_probs=99.0
Q ss_pred cccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCe-----EEEEeCCCcEEEEcCc
Q psy7579 18 AKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAG-----VAIVTTDKALLWTDGR 92 (289)
Q Consensus 18 ~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G-----~llVt~d~a~L~tD~R 92 (289)
..++.+|+++||+.|+++| +||+||+++ .|++|||||++... +++++.++..++++.|
T Consensus 12 ~~Ey~~Rl~rlr~~m~~~g-----lDalli~~~------------~ni~YLTG~~~~~~~~~~~~lvv~~~g~~~~~~~~ 74 (377)
T 4fkc_A 12 SMDYKRRIHKFQAHFGKKG-----FEGALVAPG------------SNFYYLTGFNPLGTLERLFVLILPSEGLLTAIAPR 74 (377)
T ss_dssp SSCHHHHHHHHHHHHHHTT-----CCEEEECSS------------HHHHHHHSCCCCCCSSSCCEEEEESSSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHHCC-----CCEEEECCC------------hhheeecCCCCCCCCcceEEEEEcCCCcEEEEecc
Confidence 4679999999999999999 999999998 69999999997643 5777777766666677
Q ss_pred cHHHHhhhcCCCeEEEecCCCCCcCH----HHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhh
Q psy7579 93 YHLQASQELDNNWTLMKAGLPTTLSE----KEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDL 168 (289)
Q Consensus 93 Y~~QA~~ql~~~~~l~~~g~~~~~~~----~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dl 168 (289)
+..++.++.......+.. ..++ .+.|.+....+++||+|. .+++..+..|++.++ +.++++.+..+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~i~~d~-~~~~~~~~~l~~~~~--~~~~~d~~~~i~~l 147 (377)
T 4fkc_A 75 LYEKELEEFNGEVVLWSD----SENPYKIFATKIKETFKEGEKLLIDD-TMPVGVFLKAKDIFD--KYSLHPISPVISEL 147 (377)
T ss_dssp GGHHHHTTCSSEEEEECT----TSCHHHHHHHHHHHHSCSSCEEEECT-TSCHHHHHHTHHHHT--TSEEEESHHHHHHH
T ss_pred chHHHHHhcCCCEEEecc----ccCHHHHHHHHHHHhhhccceeeeec-cccHHHHHHHHhhCC--CCeEEEhHHHHHHH
Confidence 777766665533322221 2233 345556666678999995 589999999999886 47899999888888
Q ss_pred hh
Q psy7579 169 VW 170 (289)
Q Consensus 169 iw 170 (289)
|.
T Consensus 148 R~ 149 (377)
T 4fkc_A 148 RE 149 (377)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 15
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Probab=99.26 E-value=6.3e-12 Score=121.36 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=103.8
Q ss_pred cccHHHHHHHHHHHHHh--------CCCCCCceeEEEEcCCCCCCCcccCCcccc---ceeeccccccCeEEEEeCCCcE
Q psy7579 18 AKNTTGILQKLRAIMKT--------NTHVPEAIQAYIVTSQDAHTSEYLADADQR---RAFVSGFTGSAGVAIVTTDKAL 86 (289)
Q Consensus 18 ~~~~~~RL~~LR~~M~~--------~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~---l~YLTGFtGS~G~llVt~d~a~ 86 (289)
..++.+|+++||+.|++ ++ +|++||++.|++ |+. .+.++ ++|||||+++.++++|+.++++
T Consensus 10 ~~~~~~Rl~~L~~~m~~~~~~~~~~~g-----~Dalli~~~~~d--~~~-~y~q~~~~~~yLtG~~~~~~~lvi~~~~~~ 81 (444)
T 3cb6_A 10 EITFHKRLGILLTSWKNEEDGKTLFQD-----CDSILVTVGAHD--DTN-PYQKSTALHTWLLGYEFPSTLILLEKHRIT 81 (444)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHTSTT-----CSEEEEEECSCC--TTC-CCCHHHHHHHHHHSSCCSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHhhhcCcccccccC-----CCEEEEEeCCCC--CCC-CcccchhhhHHHhCCCCCCEEEEEeCCcEE
Confidence 46788999999999998 88 999999998752 221 22333 7899999999999999999999
Q ss_pred EEEcCc---cHHHHh-hhcCC-CeEEEec-CCCCCc-CHHHHHHhhCC-CCCeEEEcC-CcccHHHHHHHHHHhhc--CC
Q psy7579 87 LWTDGR---YHLQAS-QELDN-NWTLMKA-GLPTTL-SEKEWLVKNLP-AGSKVGVDP-ALITFQEFKNYETEFEN--GG 155 (289)
Q Consensus 87 L~tD~R---Y~~QA~-~ql~~-~~~l~~~-g~~~~~-~~~~~L~~~l~-~~~~VG~D~-~~is~~~~~~L~~~l~~--~~ 155 (289)
||+|++ |+.+++ .++.. .++++.. ...+.+ +..+.+.+.+. .+++||+++ ..++...+..+.+.+.. .+
T Consensus 82 l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~ig~~~~~~~~~~~~~~l~~~l~~~~~~ 161 (444)
T 3cb6_A 82 ILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKSE 161 (444)
T ss_dssp EEEEHHHHTTTHHHHTCTTCSSEEEEEEECSCHHHHHHHHHHHHHHHHTTTSEEEECTTCCCCSHHHHHHHHHHTTTGGG
T ss_pred EEEcCchHHHHhhhhccccCCccEEEEecccccccCHHHHHHHHHHHHhcCCEEEEeccccchhHHHHHHHHHHhhccCC
Confidence 999997 778887 55542 3555542 110000 12344444332 246899987 66788888888777742 24
Q ss_pred ceEeeccccchhhhh
Q psy7579 156 LTMLPIKTNLVDLVW 170 (289)
Q Consensus 156 ~~lv~~~~~L~dliw 170 (289)
.++++.+..+..+|.
T Consensus 162 ~~~~~~~~~i~~~r~ 176 (444)
T 3cb6_A 162 FNLVDASLGLAKCLA 176 (444)
T ss_dssp SEEEECHHHHHHHHH
T ss_pred ceEeecHHHHHHHHc
Confidence 689998888888887
No 16
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Probab=99.20 E-value=1.4e-11 Score=116.06 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCe-E-EEEeCCCcEEEEcCccHHHHh
Q psy7579 21 TTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAG-V-AIVTTDKALLWTDGRYHLQAS 98 (289)
Q Consensus 21 ~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G-~-llVt~d~a~L~tD~RY~~QA~ 98 (289)
|.+|+++||+.|++++ +|+++|+++ .|++|||||+++.+ + ++|+.++..+++|.++ .+|
T Consensus 4 m~~R~~~l~~~m~~~~-----~da~li~~~------------~n~~yltg~~~~~~~~~llv~~~~~~l~~~~~~-~~~- 64 (351)
T 1wy2_A 4 MNEKVKKIIEFMDKNS-----IDAVLIAKN------------PNVYYISGASPLAGGYILITGESATLYVPELEY-EMA- 64 (351)
T ss_dssp CCHHHHHHHHHHHHTT-----CSEEEECSH------------HHHHHHHSCCCSSCCEEEEETTEEEEEEEHHHH-HHH-
T ss_pred HHHHHHHHHHHHHHCC-----CCEEEECCC------------CCceEecCCCCCCCcEEEEEECCCcEEEECchH-HHH-
Confidence 3589999999999999 999999988 69999999999876 7 8889899999999999 888
Q ss_pred hhcCCCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 99 QELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 99 ~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
++.. .+++..+. . .+.+.+.+...++||+| ..+++..++.|++.++ ..++++.+..+..+|.
T Consensus 65 ~~~~-~~~v~~~~-----~-~~~l~~~l~~~~~ig~e-~~~~~~~~~~l~~~~~--~~~~~~~~~~i~~~r~ 126 (351)
T 1wy2_A 65 KEES-NIPVEKFK-----K-MDEFYKALEGIKSLGIE-SSLPYGFIEELKKKAN--IKEFKKVDDVIRDMRI 126 (351)
T ss_dssp HHHC-SSCEEEES-----S-HHHHHHHHTTCSEEEEC-TTCBHHHHHHHHHHSC--CCEEEECHHHHHHHHT
T ss_pred hhcC-CCeEEEeC-----c-HHHHHHHHccCCEEEEc-CcCCHHHHHHHHhhCC--CCeEEEcHHHHHHHHh
Confidence 4443 23444331 1 23344444445799999 8899999999988764 3478998888888887
No 17
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1
Probab=99.17 E-value=1.6e-10 Score=110.48 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=103.0
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeecccccc----CeEEEEeCCCcEEEEcCc
Q psy7579 17 TAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGS----AGVAIVTTDKALLWTDGR 92 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS----~G~llVt~d~a~L~tD~R 92 (289)
+..++.+|+++||+.|++++ +||+||++. .|++|+|||.++ ...++|+.+++++++|++
T Consensus 19 ~~~e~~~R~~~l~~~m~~~~-----~da~li~~~------------~ni~yltg~~~~~~~~~~~llv~~~~~~l~~~~~ 81 (401)
T 1chm_A 19 SAQEYANRQARLRAHLAAEN-----IDAAIFTSY------------HNINYYSDFLYCSFGRPYALVVTEDDVISISANI 81 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-----CSEEEECSH------------HHHHHHHSCCCCCTTCCCEEEECSSCEEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHHHCC-----CCEEEEeCc------------ccceeeCCCCcCCCCCeEEEEEecCCCEEEeccc
Confidence 34678999999999999999 999999998 689999999753 236778888999999999
Q ss_pred cHHHHhhhcCCCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 93 YHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 93 Y~~QA~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
+..++.++....-.+...... ..++.+.|.+.+...++||+|+..+++..++.|++.++ +.++++.+..+..+|.
T Consensus 82 ~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~l~~~~~i~ve~~~~~~~~~~~l~~~~~--~~~~~~~~~~i~~~R~ 156 (401)
T 1chm_A 82 DGGQPWRRTVGTDNIVYTDWQ-RDNYFAAIQQALPKARRIGIEHDHLNLQNRDKLAARYP--DAELVDVAAACMRMRM 156 (401)
T ss_dssp GTTHHHHHCCSSEEEEECTTS-TTHHHHHHHHHCSCCSEEEECTTTCBHHHHHHHHHHCT--TCEEEECHHHHHHHHT
T ss_pred chhhHHHhhcccceeeecccc-ccCHHHHHHHHhccCCeEEEecCCCCHHHHHHHHhhCC--CCEEEEhHHHHHHHHh
Confidence 988764443221122211111 13467888887765679999999999999999988764 4689998888888887
No 18
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114}
Probab=99.15 E-value=5.4e-11 Score=116.62 Aligned_cols=129 Identities=8% Similarity=-0.006 Sum_probs=91.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccc--------cCeEEEEeCCCcEEEEc
Q psy7579 19 KNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTG--------SAGVAIVTTDKALLWTD 90 (289)
Q Consensus 19 ~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtG--------S~G~llVt~d~a~L~tD 90 (289)
.++.+||++||+.|+++| +||+||+++ .|++|||||+| +.++++|+.+++.+|+|
T Consensus 77 ~~~~~Rl~rlr~~m~~~g-----lDalli~~~------------~ni~YlTGf~g~~~~~~~~~~~~llV~~dg~~~l~d 139 (470)
T 4b28_A 77 AMRRFRHRRLTDHVVARG-----YAGLLMFDP------------LNIRYATDSTNMQLWNTHNPFRATLLCADGYMVMWD 139 (470)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CSEEEECSH------------HHHHHHHCCCSSHHHHHHSCCCEEEEETTSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC-----CCEEEEcCC------------CcceeecCCCCCcccccCCCCEEEEEECCCCEEEEe
Confidence 467799999999999999 999999999 79999999998 46899999999999999
Q ss_pred CccHHHHhhhcCCCeEEEecCC-----CCC----------cCHHHHHHhhCCCCCeEEEcCCcccHHHHHHHHHHhhcCC
Q psy7579 91 GRYHLQASQELDNNWTLMKAGL-----PTT----------LSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGG 155 (289)
Q Consensus 91 ~RY~~QA~~ql~~~~~l~~~g~-----~~~----------~~~~~~L~~~l~~~~~VG~D~~~is~~~~~~L~~~l~~~~ 155 (289)
+||..........--++..... .+. ..+.+.|.+.....++||||.. ++..|+.|++ .+
T Consensus 140 ~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~igve~~--~~~~~~~L~~----~~ 213 (470)
T 4b28_A 140 YKNSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILLRDHAPGLRRLAVDKV--MLHGLRALQA----QG 213 (470)
T ss_dssp CTTCGGGGTTCTTSCEEECCCCCSHHHHGGGHHHHHHHHHHHHHHHHHHHSTTCCEEEESSC--CHHHHHHHHH----TT
T ss_pred cchhhhhhhhhhHHHHHHhcCCeeeeccCccccccchhHHHHHHHHHHHhCccCceeeeCcc--hHHHHHHHHc----CC
Confidence 9985432211110001111000 000 0123455554334679999985 5777888775 25
Q ss_pred ceEeeccccchhhhh
Q psy7579 156 LTMLPIKTNLVDLVW 170 (289)
Q Consensus 156 ~~lv~~~~~L~dliw 170 (289)
+++++.+..+..+|.
T Consensus 214 ~~~vd~~~~v~~lR~ 228 (470)
T 4b28_A 214 FEIMDGEEVTEKARS 228 (470)
T ss_dssp CEEEEHHHHHHHHHT
T ss_pred CEEEEcHHHHHHHHh
Confidence 789999999999887
No 19
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Probab=99.06 E-value=1.6e-10 Score=109.01 Aligned_cols=120 Identities=9% Similarity=0.108 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeecccccc-----CeEEEEeCCC-cEEEEcCccHHH
Q psy7579 23 GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGS-----AGVAIVTTDK-ALLWTDGRYHLQ 96 (289)
Q Consensus 23 ~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS-----~G~llVt~d~-a~L~tD~RY~~Q 96 (289)
+|+++||+.|++++ +|+++|+++ .|++|||||++. .++++|+.++ ++||+|.+|..+
T Consensus 1 ~R~~~l~~~m~~~~-----~d~~li~~~------------~n~~yltG~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~ 63 (356)
T 1wn1_A 1 MRLEKFIHLLGERG-----FDGALISPG------------TNLYYLTGLRLHEVGERLAILAVSAEGDYRFLAPSLYENV 63 (356)
T ss_dssp CHHHHHHHHHHHTT-----CSEEEECSS------------HHHHHHHCCCCSCCTTSCCEEEEETTSCEEEEEEGGGTTT
T ss_pred CHHHHHHHHHHHCC-----CcEEEECCC------------ccceeecCCcCCCCCCceEEEEEeCCCcEEEEECcccHHH
Confidence 38999999999999 999999998 699999999854 4788999876 999999999776
Q ss_pred HhhhcCCCeEEEecCCCCCcCHHHHHHhhCC----CCCeEEEcCCcccHHHHHHHHHHhhcCCceEeeccccchhhhh
Q psy7579 97 ASQELDNNWTLMKAGLPTTLSEKEWLVKNLP----AGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 97 A~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~----~~~~VG~D~~~is~~~~~~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
++. +++.... +..+..+.+.+.+. ..++||+| ..+++..++.|++. .+.++++.+..+..+|.
T Consensus 64 ~~~-----~~v~~~~--~~~~~~~~l~~~l~~~~~~~~~i~~~-~~~~~~~~~~l~~~---~~~~~~~~~~~i~~~R~ 130 (356)
T 1wn1_A 64 VNN-----FPATFWH--DGENPYAKLREILEELGISKGRILIE-DTMRADWLIGIMKL---GKFTFQPLSSLIKELRM 130 (356)
T ss_dssp TTT-----SCEEEEC--TTSCHHHHHHHHHHHTTCSSEEEEEC-TTSBHHHHHHHGGG---SCEEEEETHHHHHHHHT
T ss_pred hhC-----CeEEEEc--CCCCHHHHHHHHHHHhcCCCCEEEEe-CCcCHHHHHHHHcC---CCCeEEEcHHHHHHHHh
Confidence 654 2233221 11233444443332 34689999 77999999988764 25688998888888887
No 20
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens}
Probab=98.76 E-value=1.2e-08 Score=103.09 Aligned_cols=124 Identities=16% Similarity=0.081 Sum_probs=92.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccC--------eEEEEeCCCcEEEEc
Q psy7579 19 KNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSA--------GVAIVTTDKALLWTD 90 (289)
Q Consensus 19 ~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~--------G~llVt~d~a~L~tD 90 (289)
.++.+|+++||+.|++++ +|++||++. .+++|++||+|+. ++++|+.++++||+|
T Consensus 176 ~~~~~rl~~lr~~m~e~~-----~dallit~~------------~~i~yl~~~~G~dv~~~pi~~~~llv~~~~~~l~v~ 238 (623)
T 3ctz_A 176 ISWKDKVADLRLKMAERN-----VMWFVVTAL------------DEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFID 238 (623)
T ss_dssp SCHHHHHHHHHHHHHTTT-----EEEEEECCH------------HHHHHHHTEECCSSSSSCCCSCEEEEESSCEEEECC
T ss_pred hhHHHHHHHHHHHHHHcC-----CCEEEECCH------------HHHHHHhCCCCccCCCCcceeEEEEEecCCcEEEEe
Confidence 457899999999999999 999999999 5999999999973 789999999999999
Q ss_pred CccHH--HHhhhcC--------CCeEEEecCCCCCcCHHHHHHhhCC---CCCeEEEcCCcccHHHHHHHHHHhhcCCce
Q psy7579 91 GRYHL--QASQELD--------NNWTLMKAGLPTTLSEKEWLVKNLP---AGSKVGVDPALITFQEFKNYETEFENGGLT 157 (289)
Q Consensus 91 ~RY~~--QA~~ql~--------~~~~l~~~g~~~~~~~~~~L~~~l~---~~~~VG~D~~~is~~~~~~L~~~l~~~~~~ 157 (289)
.++.. +++..+. ..+++..+ .++.+.|.+... ..++||+|+. +++..++.| .. +.+
T Consensus 239 ~~~~~~~~~~~~l~~~~~~p~~~~v~v~~y-----~~~~~~l~~l~~~~~~~~~i~id~~-~~~~l~~~l----~~-~~~ 307 (623)
T 3ctz_A 239 GDRIDAPSVKEHLLLDLGLEAEYRIQVHPY-----KSILSELKALCADLSPREKVWVSDK-ASYAVSETI----PK-DHR 307 (623)
T ss_dssp SGGGGSHHHHHHTTTTSCCCGGGCEEEECG-----GGHHHHHHHHHHTCCTTCEEEEETT-SBHHHHHHS----CG-GGE
T ss_pred chhcCHHHHHHHHhhccccccCCceEEEEh-----HHHHHHHHHHHhcccCCeEEEECch-hhHHHHHhc----cc-cce
Confidence 98754 5666652 23666543 346666665432 2368999987 565544444 22 236
Q ss_pred Eeeccccchhhhh
Q psy7579 158 MLPIKTNLVDLVW 170 (289)
Q Consensus 158 lv~~~~~L~dliw 170 (289)
+++....+..++.
T Consensus 308 ~v~~~~~i~~~R~ 320 (623)
T 3ctz_A 308 CCMPYTPICIAKA 320 (623)
T ss_dssp EEESSCHHHHHHH
T ss_pred EEecccHHHHHHh
Confidence 7787777877776
No 21
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis}
Probab=98.36 E-value=2.6e-07 Score=89.46 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=97.1
Q ss_pred cccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCC----CCcccCCccccceeeccccccCeEEEEeCC----CcEE
Q psy7579 16 ATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAH----TSEYLADADQRRAFVSGFTGSAGVAIVTTD----KALL 87 (289)
Q Consensus 16 ~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h----~sEy~~~~~~~l~YLTGFtGS~G~llVt~d----~a~L 87 (289)
|+...+.+|.++|.+.|...+ .+|+++.++. ..+|.=-++.+.+|||||+++.++++++.+ +..|
T Consensus 1 m~~~~~~~RR~~l~~~l~~~~-------~~i~~~~~~~~~~~d~~~~frq~s~f~YltG~~~~~~~~v~~~~~~~~~~~l 73 (427)
T 3ig4_A 1 MKSKFFAQNRERLVNTLPDES-------ITILFAGQAPHMSADAHYKFVPNRNFYYVTGIDEPNVIFMLKKFGNSVEETL 73 (427)
T ss_dssp CCHHHHHHHHHHHHTTSCSSE-------EEEEECCCCCEEETTEECCCCCCHHHHHHHCCCSTTCEEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCcCCC-------EEEEECCCccccCCCCCCcccCCCCeEEeeCCCCCCEEEEEEccCCCceEEE
Confidence 345678899999988886543 3455555332 245655667899999999999998888652 3455
Q ss_pred EE-----------cCccHHHHhhhcCCCe-EEEecCCCCCcCHHHHHHhhCCC--CCeEEEcCC--------cccHHHHH
Q psy7579 88 WT-----------DGRYHLQASQELDNNW-TLMKAGLPTTLSEKEWLVKNLPA--GSKVGVDPA--------LITFQEFK 145 (289)
Q Consensus 88 ~t-----------D~RY~~QA~~ql~~~~-~l~~~g~~~~~~~~~~L~~~l~~--~~~VG~D~~--------~is~~~~~ 145 (289)
|+ +.||..++.++... + ++... .++.+.|.+.+.. ..+|+++.. .+++..++
T Consensus 74 fv~~~~~~~~~w~g~r~~~~~a~~~~~-~~~v~~~-----~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 147 (427)
T 3ig4_A 74 FIEKSDPVMEKWVGKTVSNEEAEKISG-IKKVIYL-----DSFEKTMSNIFFTENVKHLYLDLECREWKGTETKTLAFAK 147 (427)
T ss_dssp EECCCCTTGGGTTCCCCCHHHHHHHHC-CSEEEEG-----GGHHHHHHHHHTTTCCCEEEECCCCCCTTCCCCHHHHHHH
T ss_pred EecCCCccceEEeCCCCcHHHHHhcCC-CCEEEEh-----hhHHHHHHHHHhcCCCcEEEEeCCccccccccccCHHHHH
Confidence 54 47897777666442 2 23332 3566777766554 578999864 35677888
Q ss_pred HHHHHhhcCCceEeeccccchhhhh
Q psy7579 146 NYETEFENGGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 146 ~L~~~l~~~~~~lv~~~~~L~dliw 170 (289)
.|++.++ +.++++++..+..+|.
T Consensus 148 ~l~~~~~--~~~~~~~~~~i~~lR~ 170 (427)
T 3ig4_A 148 HVREQYP--HVTIGNVYPNICELRV 170 (427)
T ss_dssp HHHHHCT--TCEEEECHHHHHHHHT
T ss_pred HHHhhCC--CCeEeEhHHHHHHHHh
Confidence 8988875 4689999989988887
No 22
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ...
Probab=98.33 E-value=5.6e-07 Score=87.08 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=91.5
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCC---CCcccCCccccceeeccccccCeEEEEeC-----CCcEEE
Q psy7579 17 TAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAH---TSEYLADADQRRAFVSGFTGSAGVAIVTT-----DKALLW 88 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h---~sEy~~~~~~~l~YLTGFtGS~G~llVt~-----d~a~L~ 88 (289)
+..++.+|+++||+.|++++ +++|++.++.. ..+|.=-.+.+++|||||.+..++++|+. ++++||
T Consensus 4 ~~~e~~~R~~~l~~~m~~~~------~~ll~~~~~~~r~~D~~y~frq~~n~~YltG~~~~~~~lvi~~~~~~~~~~~Lf 77 (440)
T 2v3z_A 4 SRQEFQRRRQALVEQMQPGS------AALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLF 77 (440)
T ss_dssp CHHHHHHHHHHHHHHSCSSE------EEEEECCCCCEEETTEECCCCCCHHHHHHHCCCCSSCEEEEEECSSSCEEEEEE
T ss_pred CHHHHHHHHHHHHHhcccCC------EEEEECCCccccCCCCCCcccCCCCEEEecCCCCCCEEEEEEecCCCCceEEEE
Confidence 44678999999999998864 68888765321 12333334578999999999888888875 368999
Q ss_pred EcCccHHH-----------H-hhhcCCCeEEEecCCCCCcCHHHHHHhhCCCCCeEEEcCCcc------cHHHHHHHHHH
Q psy7579 89 TDGRYHLQ-----------A-SQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALI------TFQEFKNYETE 150 (289)
Q Consensus 89 tD~RY~~Q-----------A-~~ql~~~~~l~~~g~~~~~~~~~~L~~~l~~~~~VG~D~~~i------s~~~~~~L~~~ 150 (289)
++.++..+ + .+...-. .+... .++.+.|.+.+...++|+++.... +...+..+.+.
T Consensus 78 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 151 (440)
T 2v3z_A 78 NRVRDLTAEIWFGRRLGQDAAPEKLGVD-RALAF-----SEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKG 151 (440)
T ss_dssp ECCCCHHHHHHHCCCCHHHHHHHHHTCS-EEEEG-----GGHHHHHHHHHTTCSEEECCTTSCHHHHHHHHHHHHHHHTC
T ss_pred ecCCCcccceecCCCCCHHHHHHhcCCC-EEeeH-----HHHHHHHHHHHcCCCEEEEeCCcccchhHHHHHHHHHHhhh
Confidence 98876443 2 2222211 22222 356777776655557899987642 23344444443
Q ss_pred hhc---CCceEeeccccchhhhh
Q psy7579 151 FEN---GGLTMLPIKTNLVDLVW 170 (289)
Q Consensus 151 l~~---~~~~lv~~~~~L~dliw 170 (289)
+.. .+.++++.+..+..+|.
T Consensus 152 ~~~~~~~~~~~~~~~~~i~~~R~ 174 (440)
T 2v3z_A 152 SRQNLTAPATMIDWRPVVHEMRL 174 (440)
T ss_dssp GGGTCCCCSEEECCHHHHHHHHH
T ss_pred cccccCCcceeeeHHHHHHHHHh
Confidence 321 23578888888888887
No 23
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Probab=96.57 E-value=0.0022 Score=62.77 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=57.3
Q ss_pred ccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCC-----CCCcccCCccccceeeccccccCeEEEEeC--CCcEEEE
Q psy7579 17 TAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDA-----HTSEYLADADQRRAFVSGFTGSAGVAIVTT--DKALLWT 89 (289)
Q Consensus 17 ~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~-----h~sEy~~~~~~~l~YLTGFtGS~G~llVt~--d~a~L~t 89 (289)
+..++.+|+++|++.|++++. ..+.+++||++... ..++|.--.+.+.+|||||....++++|.. ++.+||+
T Consensus 20 ~~~e~~~Rr~~l~~~~~~~~~-~~~~~~~il~~~~~~~~~~~d~~y~frq~s~f~YLtG~~~p~~~~vi~~~~~~~~L~~ 98 (494)
T 2iw2_A 20 PLALFALNRQRLCERLRKNPA-VQAGSIVVLQGGEETQRYCTDTGVLFRQESFFHWAFGVTEPGCYGVIDVDTGKSTLFV 98 (494)
T ss_dssp ETHHHHHHHHHHHHHHHHCTT-CCTTCEEEEECCCCEESTTSCCEECCCCCHHHHHHHCCCSSSCEEEEETTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhhc-ccCceEEEEeCCcceeecCCCCCCCccCCcceeeecCCCCCCeEEEEEccCCeEEEEE
Confidence 457899999999999998750 00146899977654 345676567778999999998888887753 6788999
Q ss_pred cCccH
Q psy7579 90 DGRYH 94 (289)
Q Consensus 90 D~RY~ 94 (289)
+....
T Consensus 99 ~~~~~ 103 (494)
T 2iw2_A 99 PRLPA 103 (494)
T ss_dssp CCCCG
T ss_pred CCCCH
Confidence 76543
No 24
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae}
Probab=91.30 E-value=0.058 Score=43.14 Aligned_cols=48 Identities=10% Similarity=0.346 Sum_probs=38.3
Q ss_pred hHHHHhhCCCCCccccCchhhhhHhhhchhhhhhcCCccccCCCCChhhh
Q psy7579 187 KEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDL 236 (289)
Q Consensus 187 ~~w~~~~~~~~~~v~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~nlvd~ 236 (289)
.+|+.+.++.+++||+|+..++++.|..+.+.+.. ++++.|+ .++|+.
T Consensus 86 ~~~l~~~~~~~~~vG~e~~~ls~~~~~~L~~~l~~-~~~lv~~-~~~v~~ 133 (135)
T 3qoc_A 86 APALLSDINGPKRVGFEADYLSVSQCEELRKSAGS-DVELIPV-TGAIEK 133 (135)
T ss_dssp HHHHHHTCCSSEEEEEETTTSBHHHHHHHHHHSCT-TEEEEEE-CSCC--
T ss_pred HHHHHhcCcCCCeEEECCCcccHHHHHHHHHhccC-CcEEEEC-ccHHHH
Confidence 57887777889999999999999999999998854 4677777 466665
No 25
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea center, BI-functional, prolidase, nerve agents, XAA-Pro DIP hydrolase; 1.80A {Alteromonas macleodii}
Probab=84.42 E-value=0.92 Score=43.72 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCC-----CCcccCCccccceeeccccc-cCeEEEEeCC-CcEEEEcC
Q psy7579 20 NTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAH-----TSEYLADADQRRAFVSGFTG-SAGVAIVTTD-KALLWTDG 91 (289)
Q Consensus 20 ~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h-----~sEy~~~~~~~l~YLTGFtG-S~G~llVt~d-~a~L~tD~ 91 (289)
...++.+++|+.|++.+ .|+++|.+.-+. -.+|.=-.+..-+|+|||.- ..+++++..+ ++.||+..
T Consensus 11 ~~~~~~~r~~~~l~~~~-----~~~~~i~~~~~~~~~~~D~~~~frq~~~f~yl~g~~e~p~~~L~~~~~~~~~l~~~~ 84 (451)
T 3rva_A 11 HIEELQARTREALQREG-----LDGLVIHSGQGKRLFLDDNHYPFKVNPQFKAWVPVIDNPNCWLVVNGVDKPTLIFYR 84 (451)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEECCCCCBCTTSSCBCCCCCCHHHHTTCSCCSCSSCEEEECSSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCC-----CCEEEEECCCceEEecCCCCCCcccCCCceEEeccCCCCCEEEEEecCCCeEEEeec
Confidence 45677888999999998 998888776322 11333334455568888876 4566666443 56676643
No 26
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=83.37 E-value=0.86 Score=38.07 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=46.1
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccccCeEEEE
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIV 80 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtGS~G~llV 80 (289)
|+|++||.+.+.. ....+|++.+.+.+++.+ .|.+.+---++.+-+++........|..+.....|.+++
T Consensus 10 l~v~swNi~g~~~-----~~~~~r~~~i~~~i~~~~-----pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 79 (256)
T 4gz1_A 10 ISFITWNIDGLDG-----CNLPERARGVCSCLALYS-----PDVVFLQEVIPPYCAYLKKRAASYTIITGNEEGYFTAIL 79 (256)
T ss_dssp EEEEEEECCTTCC-----TTHHHHHHHHHHHHHHHC-----CSEEEEEEECHHHHHHHHHHCTTEEEEESCSSSSEEEEE
T ss_pred EEEEEEEcCCCcC-----cCHHHHHHHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHhhccccceeeccccCCceEEE
Confidence 5799999987632 346789999999999998 898888765555555554444444444444433444433
No 27
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=77.55 E-value=3.3 Score=34.42 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=47.3
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCcccccee-eccccccCeEEE
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAF-VSGFTGSAGVAI 79 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~Y-LTGFtGS~G~ll 79 (289)
|+|++||.+.+.. .....|++++.+.+++.+ .|.+.+---++++-+++........+ ..+-.+..|.++
T Consensus 14 l~v~s~Ni~g~~~-----~~~~~r~~~i~~~i~~~~-----pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~~~~~~g~~i 83 (256)
T 4fva_A 14 VSVMSWNIDGLDG-----RSLLTRMKAVAHIVKNVN-----PDILFLQEVVDRDLAPIDKLQSLYKIYYSNKGCQYYTAI 83 (256)
T ss_dssp EEEEEEECCTTCC-----TTHHHHHHHHHHHHHHHC-----CSEEEEEEECSTTCHHHHGGGGTEEEEESSTTSSSEEEE
T ss_pred EEEEEEecCCCCC-----cCHHHHHHHHHHHHHHcC-----CCEEEEEecChhHhHHHHHhcCCceEeecCCCCCcceEE
Confidence 5799999987632 345689999999999998 99998887766665555433333222 222223446665
Q ss_pred EeC
Q psy7579 80 VTT 82 (289)
Q Consensus 80 Vt~ 82 (289)
...
T Consensus 84 l~~ 86 (256)
T 4fva_A 84 LVS 86 (256)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 28
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=76.22 E-value=1.5 Score=35.90 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=45.3
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccceeeccccc-cCeEEE
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTG-SAGVAI 79 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~YLTGFtG-S~G~ll 79 (289)
|+|++||.+.+.. .....|++++.+.+++.+ .|.+.+---++.+-+++........|+.+-.. ..|.++
T Consensus 4 l~v~t~Ni~g~~~-----~~~~~r~~~i~~~i~~~~-----pDIi~LQEv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (250)
T 4f1h_A 4 LSIISWNVDGLDT-----LNLADRARGLCSYLALYT-----PDVVFLQELIPAYVQYLKKRAVSYLFFEGSDDGYFTGIM 73 (250)
T ss_dssp EEEEEEECCTTCC-----TTHHHHHHHHHHHHHHHC-----CSEEEEEEECHHHHHHHHHHCTTEEEEESCSSSSEEEEE
T ss_pred EEEEEEEeCCCCC-----cCHHHHHHHHHHHHHHcC-----CCEEEEEeCCHHHHHHHHHhccCceeecccccccCceeE
Confidence 6899999987632 346689999999999998 89888876554443444333333334433332 234444
Q ss_pred EeCC
Q psy7579 80 VTTD 83 (289)
Q Consensus 80 Vt~d 83 (289)
+...
T Consensus 74 ~~~~ 77 (250)
T 4f1h_A 74 LRKS 77 (250)
T ss_dssp EETT
T ss_pred Eeec
Confidence 4333
No 29
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114}
Probab=75.61 E-value=0.96 Score=43.82 Aligned_cols=29 Identities=3% Similarity=0.013 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHhCCCCEEEecCCCCC
Q psy7579 260 TIDKKLEQVREKMNEKKATVLVLTALDEV 288 (289)
Q Consensus 260 ~~~~Ki~~ir~~l~~~~~~~~~~t~ld~i 288 (289)
-+.+|++++|+.|+++++|++|||+.++|
T Consensus 78 ~~~~Rl~rlr~~m~~~glDalli~~~~ni 106 (470)
T 4b28_A 78 MRRFRHRRLTDHVVARGYAGLLMFDPLNI 106 (470)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECSHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 35789999999999999999999998765
No 30
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase, manganese, metal-binding, metalloprotease, protease; 2.30A {Alteromonas SP} PDB: 3l7g_A*
Probab=75.50 E-value=3.8 Score=40.18 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCC-----CCcccCCccccceeeccccc-cCeEEEEeCC-CcEEEEc
Q psy7579 20 NTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAH-----TSEYLADADQRRAFVSGFTG-SAGVAIVTTD-KALLWTD 90 (289)
Q Consensus 20 ~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h-----~sEy~~~~~~~l~YLTGFtG-S~G~llVt~d-~a~L~tD 90 (289)
...++.+++++.|++.+ .|+++|.+.-+. ..+|.=-.+..-+|+|||+- ..+++++..+ ++.||+.
T Consensus 11 h~~~~~~r~~~~l~~~~-----~~~~~i~~~~~~~~~~~D~~~pFrq~s~F~yl~g~~e~p~~~l~~~~~~~~~l~~~ 83 (517)
T 3l24_A 11 HIATLQKRTREIIEREN-----LDGVVFHSGQAKRQFLDDMYYPFKVNPQFKAWLPVIDNPHCWIVANGTDKPKLIFY 83 (517)
T ss_dssp HHHHHHHHHHHHHHHTT-----CSEEEEECCCCCBCTTSSCBCCCCCCHHHHTTSSCCSCSSCEEEECSSSCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCC-----CCEEEEECCCceEEecCCCCCCceecCCceEEeccCCCCCEEEEEecCCCeEEEEe
Confidence 45567888999999998 998877765322 12343444555678899976 5566666443 5666664
No 31
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes}
Probab=73.00 E-value=0.98 Score=35.41 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=31.1
Q ss_pred CCCccccCchhhhhHhhhchhhhhhcCCccccCCCCChhhhh
Q psy7579 196 AGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 237 (289)
Q Consensus 196 ~~~~v~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~nlvd~~ 237 (289)
.+++||+|+. ++++.|..+.+.+. +.++.|+ .++|+.+
T Consensus 94 ~~~~ig~e~~-~~~~~~~~L~~~l~--~~~~v~~-~~~v~~l 131 (132)
T 3ovk_A 94 QIDCLGFEDQ-VSFSFYQAMQAELS--GITLLAQ-SGFVEHL 131 (132)
T ss_dssp TCCEEEEETT-SBHHHHHHHHHHCT--TCEEEEE-SSTTGGG
T ss_pred CCCEEEEcCC-CCHHHHHHHHhhCC--CCeEEEC-chHHHHh
Confidence 5789999999 99999999998875 4566676 5777764
No 32
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=72.17 E-value=9.3 Score=32.17 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=30.1
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcc
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEY 57 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy 57 (289)
|.|++||.+.. ..++.++.+.+++.+ .|.+.+.-.+.+....
T Consensus 20 lri~s~Nv~~~----------~~~~~~l~~~i~~~~-----~DIv~lQE~~~~~~~~ 61 (245)
T 1wdu_A 20 YRVLQANLQRK----------KLATAELAIEAATRK-----AAIALIQEPYVGGAKS 61 (245)
T ss_dssp EEEEEEECTTC----------HHHHHHHHHHHHHHT-----CSEEEEESCCC-----
T ss_pred eeeeeeecccc----------HHHHHHHHHHHhhcC-----CCEEEEEcccccCCcc
Confidence 57899999876 235677889999998 9999998876554443
No 33
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=71.53 E-value=4.4 Score=37.33 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=49.6
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCccccce-eeccccccCeEEE
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRA-FVSGFTGSAGVAI 79 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~~~~l~-YLTGFtGS~G~ll 79 (289)
|+|++||.+.+.. .....|+..+.+.+++.+ .|.+.+---++++-+++........ |..|=.+..|++|
T Consensus 120 lkVlSWNI~Gl~~-----~~~~~R~~~I~~~I~~~~-----PDIV~LQEv~~~~~~~l~~~~~~y~~~~~~~~~~~G~aI 189 (362)
T 4gew_A 120 VSVMSWNIDGLDG-----RSLLTRMKAVAHIVKNVN-----PDILFLQEVVDRDLAPIDKLQSLYKIYYSNKGCQYYTAI 189 (362)
T ss_dssp EEEEEEECCTTCC-----TTHHHHHHHHHHHHHHHC-----CSEEEEEEECSTTCHHHHGGGGTEEEEESSTTSSSEEEE
T ss_pred EEEEEEEeCCCCC-----cCHHHHHHHHHHHHHHcC-----CCEEEEEcCChhHhHHHHHhcCCceEEeCCCCCCceEEE
Confidence 6899999998732 346789999999999998 9999888766666566544332222 3333334457776
Q ss_pred EeCC
Q psy7579 80 VTTD 83 (289)
Q Consensus 80 Vt~d 83 (289)
..+.
T Consensus 190 lsk~ 193 (362)
T 4gew_A 190 LVSK 193 (362)
T ss_dssp EEET
T ss_pred EEec
Confidence 6553
No 34
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Probab=69.15 E-value=1 Score=34.82 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=34.7
Q ss_pred hhHHHHhhCCCC--CccccCchhhhhHhhhchhhhhhcCCccccCCCCChhhhh
Q psy7579 186 EKEWLVKNLPAG--SKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 237 (289)
Q Consensus 186 ~~~w~~~~~~~~--~~v~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~nlvd~~ 237 (289)
..+|+.+.+..+ ++||+|+. ++++.|..+.+++ .+.++.+. .++|+.+
T Consensus 78 ~~~~l~~~l~~~~~~~ig~e~~-~~~~~~~~L~~~~--~~~~~v~~-~~~v~~l 127 (131)
T 3il0_A 78 PLKDIVKFVEVDKLETIGFDNQ-VSFAYYQALQAIF--EGYTLSPQ-TNFMEEL 127 (131)
T ss_dssp HHHHHHHHHHHTTCCEEEEETT-SCHHHHHHHHHHT--TTSEEEEE-SSHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcCC-CCHHHHHHHHhhc--CCCEEEEC-chHHHHh
Confidence 346665544433 79999999 9999999998887 34556666 5777654
No 35
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=66.88 E-value=16 Score=29.86 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=42.3
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcc--cC-CccccceeeccccccCeE
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEY--LA-DADQRRAFVSGFTGSAGV 77 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy--~~-~~~~~l~YLTGFtGS~G~ 77 (289)
|.|++||.+.+.. ..|..++.+.+++.+ .|.+.+.-.+...... +. ..+...++-.|-.+..|+
T Consensus 8 lri~t~Nv~g~~~--------~~~~~~~~~~i~~~~-----~DIv~LQE~~~~~~~~~~l~~~~y~~~~~~~~~~~~~Gv 74 (238)
T 1vyb_A 8 ITILTLNINGLNS--------AIKRHRLASWIKSQD-----PSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGV 74 (238)
T ss_dssp EEEEEEECSCCCS--------HHHHHHHHHHHHHHC-----CSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCCE
T ss_pred ceEEEEecccCCc--------hhhHHHHHHHHHHcC-----CCEEEEecccCCCCCchhHhhCCCCeEEEccCCCCCceE
Confidence 4799999987632 245678889999988 9999987663221111 11 112222223333455688
Q ss_pred EEEeCCC
Q psy7579 78 AIVTTDK 84 (289)
Q Consensus 78 llVt~d~ 84 (289)
+|..+..
T Consensus 75 ail~r~~ 81 (238)
T 1vyb_A 75 AILVSDK 81 (238)
T ss_dssp EEEECTT
T ss_pred EEEEeCC
Confidence 8877653
No 36
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=63.54 E-value=15 Score=30.45 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=44.5
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcccCCc---cccceeeccccccCeE
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADA---DQRRAFVSGFTGSAGV 77 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy~~~~---~~~l~YLTGFtGS~G~ 77 (289)
|+|++||.+.+ ..|++++.+.+++.+ .|.+.+.-.+.....+.... ..-..+..|-.|..|+
T Consensus 1 lrv~t~Nv~~~----------~~~~~~i~~~i~~~~-----~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~~~~~~G~ 65 (256)
T 2jc4_A 1 MKITTWNVNSL----------NVRLPQVQNLLADNP-----PDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGV 65 (256)
T ss_dssp CEEEEEECSCH----------HHHHHHHHHHHHSSC-----CSEEEEECCCSCGGGSCHHHHHTTTCEEEEECCSSSCCE
T ss_pred CEEEEEEcCCc----------HHHHHHHHHHHHhcC-----CCEEEEEeeccchhcCCHhHHhhcCCeEEECCCCcceEE
Confidence 68999999854 467888999999998 99999987765544332110 0011223343345678
Q ss_pred EEEeCCC
Q psy7579 78 AIVTTDK 84 (289)
Q Consensus 78 llVt~d~ 84 (289)
+|..+..
T Consensus 66 ailsr~~ 72 (256)
T 2jc4_A 66 AIVSRSV 72 (256)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 8777653
No 37
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=56.79 E-value=17 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=27.1
Q ss_pred CeeeeeccCCCCCCccccccHHHHHH-HHHHHHHhCCCCCCceeEEEEcCCC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQ-KLRAIMKTNTHVPEAIQAYIVTSQD 51 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~-~LR~~M~~~~~~~~~iDa~iI~s~D 51 (289)
|+|++||.+.+ ..+.+ .+.+.+++.+ .|.+.+.-..
T Consensus 4 l~i~s~Nv~g~----------~~~~~~~l~~~i~~~~-----~DIv~LQEt~ 40 (265)
T 3g91_A 4 LKIISWNVNGL----------RAVHRKGFLKWFMEEK-----PDILCLQEIK 40 (265)
T ss_dssp EEEEEEECSCH----------HHHHHHTHHHHHHHHC-----CSEEEEECCC
T ss_pred cEEEEEEcCCc----------hhhhhhhHHHHHHhcC-----CCEEEEEecc
Confidence 57999999876 22333 4888898888 9999997653
No 38
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=48.48 E-value=5.8 Score=30.64 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=33.2
Q ss_pred hHHHHhhCCC--CCccccCchhhhhHhhhchhhhhhcCCccccCCCCChhhh
Q psy7579 187 KEWLVKNLPA--GSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDL 236 (289)
Q Consensus 187 ~~w~~~~~~~--~~~v~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~nlvd~ 236 (289)
.+|+.+.+.. +++||+||...+++.|..+.+.+.+ .++.+. .++|+.
T Consensus 85 ~~~l~~~l~~~~~~~vg~e~~~~~~~~~~~l~~~~~~--~~~v~~-~~~i~~ 133 (138)
T 3pn9_A 85 WQKIKHALPQLDFKRVAVEFDNLILTKYHGLKTVFET--AEFDNL-TPRIQR 133 (138)
T ss_dssp HHHHHHHSCCCCCCEEEECTTTCCHHHHHHHHHHSTT--CEEEEC-HHHHHH
T ss_pred HHHHHHHHHhccCCeEEEecCcCCHHHHHHHHHHCCC--Ceeeeh-HHHHHH
Confidence 4677666654 6899999999999999999888743 344444 244443
No 39
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=46.09 E-value=12 Score=32.14 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=30.2
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQD 51 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D 51 (289)
|.|++||.+.+ ..|+.+|.+.+++.+ .|.+.+.-..
T Consensus 8 mki~s~Nvn~~----------r~~~~~l~~~l~~~~-----~DIl~LQEt~ 43 (240)
T 2ei9_A 8 LRIGQINLGGA----------EDATRELPSIARDLG-----LDIVLVQEQY 43 (240)
T ss_dssp EEEEEEECTTC----------HHHHHTHHHHHHHHT-----CSEEEEESCC
T ss_pred ceEEEEecCcc----------HHHHHHHHHHHHHcC-----CCEEEeecce
Confidence 57999999988 346677999999998 9999998774
No 40
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=37.05 E-value=27 Score=29.09 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=29.5
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAH 53 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h 53 (289)
|+|++||.+.+ ..|++++.+.+++.+ .|.+.+.-.+..
T Consensus 1 lrv~t~Nv~~~----------~~~~~~i~~~i~~~~-----~Dii~LQE~~~~ 38 (268)
T 1ako_A 1 MKFVSFNINGL----------RARPHQLEAIVEKHQ-----PDVIGLQETKVH 38 (268)
T ss_dssp CEEEEEECSCG----------GGCHHHHHHHHHHHC-----CSEEEEECCCCC
T ss_pred CEEEEEehhHH----------HHHHHHHHHHHHHcC-----CCEEEEEeccCC
Confidence 68999999876 125677888898888 999888776543
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=36.72 E-value=28 Score=28.99 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=28.3
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQD 51 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D 51 (289)
|+|++||.+.+. .|++++.+.+++.+ .|.+.+.-.+
T Consensus 2 lrv~t~Nv~g~~----------~~~~~i~~~i~~~~-----~Dii~lQE~~ 37 (257)
T 2voa_A 2 LKIATFNVNSIR----------SRLHIVIPWLKENK-----PDILCMQETK 37 (257)
T ss_dssp EEEEEEECSCGG----------GTHHHHHHHHHHHC-----CSEEEEECCC
T ss_pred eEEEEEecCChH----------HHHHHHHHHHhhcC-----CCEEEEEEee
Confidence 579999998651 34567888999888 9999988764
No 42
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=35.82 E-value=65 Score=26.50 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=27.8
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHH-HHHHHHhCCCCCCceeEEEEcCCCCC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQK-LRAIMKTNTHVPEAIQAYIVTSQDAH 53 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~-LR~~M~~~~~~~~~iDa~iI~s~D~h 53 (289)
|+|++||.+.+ ..+.++ +.+.+++.+ .|.+.+.-.+..
T Consensus 2 l~v~t~Ni~~~----------~~~~~~~i~~~i~~~~-----~DIi~LQE~~~~ 40 (259)
T 2jc5_A 2 LKIISANVNGI----------RSAYKKGFYEYIAASG-----ADIVCVQELKAQ 40 (259)
T ss_dssp EEEEEEECSSH----------HHHHHTTHHHHHHHTT-----CSEEEEECCCCC
T ss_pred cEEEEEeeccH----------HHHHHhHHHHHHHhcC-----CCEEEEEEecch
Confidence 57999999865 122333 888899988 999998876543
No 43
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Probab=31.20 E-value=7 Score=36.19 Aligned_cols=51 Identities=10% Similarity=0.177 Sum_probs=38.6
Q ss_pred hhhHHHHhhCCCCCccccCchhhhhHhhhchhhhhhcCCccccCCCCChhhhhc
Q psy7579 185 SEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 238 (289)
Q Consensus 185 s~~~w~~~~~~~~~~v~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~nlvd~~w 238 (289)
+..+|+.+.+..+++||+|+..++++.+..+.+.+. +.++.+.. ++|+.+.
T Consensus 105 ~~~~~l~~~l~~~~~igvd~~~~~~~~~~~l~~~l~--~~~~v~~~-~~i~~lR 155 (402)
T 1kp0_A 105 NFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZKALP--GTEFVDVG-ZPVMWZR 155 (402)
T ss_dssp HHHHHHHHHHTTCSEEEECTTTCBHHHHHHHHHHST--TCEEEECH-HHHHHHH
T ss_pred CHHHHHHHHhccCCEEEEecCCCCHHHHHHHHHhCC--CCEEEECH-HHHHHHH
Confidence 446788777777899999999999999999887764 34555553 7777763
No 44
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=27.93 E-value=58 Score=27.04 Aligned_cols=51 Identities=6% Similarity=-0.054 Sum_probs=36.5
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHHHHHHHHhCCCCCCceeEEEEcCCCCCCCcc
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEY 57 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~LR~~M~~~~~~~~~iDa~iI~s~D~h~sEy 57 (289)
|+|.+||.......- .......|..++.+.+++.+ .|.+.+---+.++-+.
T Consensus 1 lrv~t~Ni~~~~~~~-~~~~w~~r~~~i~~~i~~~~-----~DIv~LQEv~~~~~~~ 51 (257)
T 3l1w_A 1 MKIATYNVRVDTEYD-QDWQWSFRKEAVCQLINFHD-----WSLCCIQEVRPNQVRD 51 (257)
T ss_dssp CEEEEEECCCCCGGG-GGGSHHHHHHHHHHHHHHHC-----CSEEEEEEECHHHHHH
T ss_pred CEEEEEEeccCCCCc-cccChHHHHHHHHHHHHHcC-----CCEEEEeCCCHHHHHH
Confidence 689999999875431 22234578899999999988 8999887665444333
No 45
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.82 E-value=66 Score=18.16 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=11.4
Q ss_pred cHHHHHHHHHHHHHh
Q psy7579 20 NTTGILQKLRAIMKT 34 (289)
Q Consensus 20 ~~~~RL~~LR~~M~~ 34 (289)
..++||.+||+.++.
T Consensus 12 dlqerlrklrkklrs 26 (27)
T 3twe_A 12 DLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 356889999988763
No 46
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=20.12 E-value=1.6e+02 Score=24.66 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=26.8
Q ss_pred CeeeeeccCCCCCCccccccHHHHHHH-HHHHHHhCCCCCCceeEEEEcCCCCC
Q psy7579 1 MTIISWNYSSLPGTMATAKNTTGILQK-LRAIMKTNTHVPEAIQAYIVTSQDAH 53 (289)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~RL~~-LR~~M~~~~~~~~~iDa~iI~s~D~h 53 (289)
|+|++||...+. .+..+ +.+.+++.+ .|.+.+.-.+..
T Consensus 29 l~v~t~Ni~~~~----------~~~~~~i~~~i~~~~-----~DIi~LQE~~~~ 67 (285)
T 2o3h_A 29 LKIASWNVDGLR----------AWIKKKGLDWVKEEA-----PDILCLQETKCS 67 (285)
T ss_dssp EEEEEEECSSHH----------HHHHTTHHHHHHHHC-----CSEEEEECCCCC
T ss_pred eEEEEEecccCh----------hhhhhhHHHHHHhcC-----CCEEEEEEeecc
Confidence 578999998651 22233 778888888 999988776543
Done!