RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7579
(289 letters)
>gnl|CDD|216431 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 128
Score = 65.8 bits (161), Expect = 1e-13
Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 25/147 (17%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVA-IVTTD 83
L++LR +M + A ++TS + +++GFTGS G+A +VT D
Sbjct: 2 LERLRELMAEAG-----LDALLLTSPE------------NIRYLTGFTGSRGLALVVTAD 44
Query: 84 KALLWTD-GRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQ 142
A L TD RY A + + + + + L + ++G + +T
Sbjct: 45 GATLLTDALRYTEAAEESVPDLEVIEYDDAEALA---DLLKELGLELKRLGFEGDHLTVA 101
Query: 143 EFKNYETEFENGGLTMLPIKTNLVDLV 169
E++ + ++ + L++ +
Sbjct: 102 EYERLKEALP--DAELVDA-SGLIEEL 125
Score = 32.3 bits (74), Expect = 0.12
Identities = 5/50 (10%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 188 EWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLV 237
+ L + ++G + +T E++ + ++ + L++ +
Sbjct: 79 DLLKELGLELKRLGFEGDHLTVAEYERLKEALP--DAELVDA-SGLIEEL 125
>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
Length = 370
Score = 35.8 bits (83), Expect = 0.023
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 174 PGVPNGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQE 211
P P G T ++ EWL+ N PAGS + VD A I F +
Sbjct: 174 PNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSD 211
Score = 32.3 bits (74), Expect = 0.25
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 103 NNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQE 143
NN T G T ++ EWL+ N PAGS + VD A I F +
Sbjct: 175 NNPT----GTVTPRADIEWLLANKPAGSVLLVDEAYIHFSD 211
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 31.1 bits (71), Expect = 0.76
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 122 LVKNLPAGSKVGVDPALITFQ----EFKNYETEFENGGLTMLPIKTNL-VDLVWENKPGV 176
L K++ G K+ VD I+ E E NGG +K+ V N PG
Sbjct: 112 LTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGG----TLKSKKGV-----NLPGA 162
Query: 177 PNGLPTTLSEKEWLVKNLPAGSKVGVD 203
LP LSEK+ K+L G + GVD
Sbjct: 163 DVDLP-ALSEKD--KKDLKFGVEQGVD 186
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 29.6 bits (67), Expect = 2.0
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 122 LVKNLPAGSKVGVDPALITFQ-----EFKNYETEFENGGLTMLPIKTNL-VDLVWENKPG 175
L K++ G+ + VD L++ + + K E NGG + + V N PG
Sbjct: 114 LTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGG----VLGSRKGV-----NLPG 164
Query: 176 VPNGLPTTLSEKEWLVKNLPAGSKVGVDPALITF 209
LP LSEK+ +L G + GVD +F
Sbjct: 165 TDVDLP-ALSEKD--KADLRFGVEQGVDMIFASF 195
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized
proteins of the Aconitase family. Homoaconitase
catalytic domain. Homoaconitase and other
uncharacterized proteins of the Aconitase family.
Homoaconitase is part of an unusual lysine biosynthesis
pathway found only in filamentous fungi, in which lysine
is synthesized via the alpha-aminoadipate pathway. In
this pathway, homoaconitase catalyzes the conversion of
cis-homoaconitic acid into homoisocitric acid. The
reaction mechanism is believed to be similar to that of
other aconitases.
Length = 363
Score = 28.7 bits (64), Expect = 3.5
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 58 LADADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLS 117
LA A + + G G G IV TD A +W G+ Q +K LP ++
Sbjct: 85 LAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVE---LKGQLPKGVT 141
Query: 118 EKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNL 165
K+ +V +K + N+ EF GL L + T L
Sbjct: 142 GKDVIVALCGLFNK----------DQVLNHAIEFTGSGLNSLSVDTRL 179
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 29.0 bits (65), Expect = 4.0
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 153 NGGLTMLPIKTNL-VDLVWENKPGVPNGLPTTLSEKEWLVKNLPAG 197
N L P T + + L W+ P +G PT L+ + L
Sbjct: 1137 NTELAKRPTSTGVRLRLQWKLLPEGTDGAPTGLALRRLL--RTDPD 1180
>gnl|CDD|240834 cd12388, RRM1_RAVER, RNA recognition motif 1 in ribonucleoprotein
PTB-binding raver-1, raver-2 and similar proteins.
This subfamily corresponds to the RRM1 of raver-1 and
raver-2. Raver-1 is a ubiquitously expressed
heterogeneous nuclear ribonucleoprotein (hnRNP) that
serves as a co-repressor of the nucleoplasmic splicing
repressor polypyrimidine tract-binding protein
(PTB)-directed splicing of select mRNAs. It shuttles
between the cytoplasm and the nucleus and can
accumulate in the perinucleolar compartment, a dynamic
nuclear substructure that harbors PTB. Raver-1 also
modulates focal adhesion assembly by binding to the
cytoskeletal proteins, including alpha-actinin,
vinculin, and metavinculin (an alternatively spliced
isoform of vinculin) at adhesion complexes,
particularly in differentiated muscle tissue. Raver-2
is a novel member of the heterogeneous nuclear
ribonucleoprotein (hnRNP) family. It shows high
sequence homology to raver-1. Raver-2 exerts a
spatio-temporal expression pattern during embryogenesis
and is mainly limited to differentiated neurons and
glia cells. Although it displays nucleo-cytoplasmic
shuttling in heterokaryons, raver2 localizes to the
nucleus in glia cells and neurons. Raver-2 can interact
with PTB and may participate in PTB-mediated
RNA-processing. However, there is no evidence
indicating that raver-2 can bind to cytoplasmic
proteins. Both, raver-1 and raver-2, contain three
N-terminal RNA recognition motifs (RRMs), also termed
RBDs (RNA binding domains) or RNPs (ribonucleoprotein
domains), two putative nuclear localization signals
(NLS) at the N- and C-termini, a central leucine-rich
region, and a C-terminal region harboring two
[SG][IL]LGxxP motifs. They binds to RNA through the
RRMs. In addition, the two [SG][IL]LGxxP motifs serve
as the PTB-binding motifs in raver1. However, raver-2
interacts with PTB through the SLLGEPP motif only. .
Length = 70
Score = 26.3 bits (58), Expect = 4.6
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 47 VTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDKA 85
VT Q+ H + L+D + V +A V ++ D+A
Sbjct: 11 VTKQEVH--DLLSDYQVKYCDVDKSKRTAQVTLLNGDQA 47
>gnl|CDD|217779 pfam03885, DUF327, Protein of unknown function (DUF327). The
proteins in this family are around 140-170 residues in
length. The proteins contain many conserved residues.
with the most conserved motifs found in the central and
C-terminal region. The function of these proteins is
unknown.
Length = 146
Score = 27.5 bits (62), Expect = 4.8
Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 259 KTIDKKLEQVREK-MNEKKATVLVLTALDEV 288
K ID+KLE++ E+ ++E+K + +L +DE+
Sbjct: 107 KVIDEKLEELTEELLDEEKDNLDILNKIDEI 137
>gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional.
Length = 2281
Score = 28.3 bits (63), Expect = 6.3
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 144 FKNYETEFE----NGGLTMLPIKTNLVD-LVWENKPGVPNGLPTTLSEK 187
++ YE+EFE G L I+ +L + +VW + P G E+
Sbjct: 2046 YEKYESEFEEGESEGALDPQQIEEDLFNHIVWAPRIWRPWGFLFDCIER 2094
Score = 28.0 bits (62), Expect = 8.6
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 212 FKNYETEFE----NGGLTMLPIKTNLVD-LVWENKPGVPNG 247
++ YE+EFE G L I+ +L + +VW + P G
Sbjct: 2046 YEKYESEFEEGESEGALDPQQIEEDLFNHIVWAPRIWRPWG 2086
>gnl|CDD|117125 pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal.
Serralysins are peptidases related to mammalian matrix
metallopeptidases (MMPs). The peptidase unit is found at
the N terminal while this domain at the C terminal forms
a corkscrew and is thought to be important for secretion
of the protein through the bacterial cell wall. This
domain contains the calcium ion binding domain
pfam00353.
Length = 220
Score = 27.3 bits (61), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 67 FVSGFTGSAGVAIVTTDKA 85
FV FTG AG A++T D A
Sbjct: 168 FVDAFTGKAGEALLTYDAA 186
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.381
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,777,696
Number of extensions: 1400358
Number of successful extensions: 1037
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1034
Number of HSP's successfully gapped: 21
Length of query: 289
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 193
Effective length of database: 6,679,618
Effective search space: 1289166274
Effective search space used: 1289166274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.2 bits)