RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7579
(289 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 225 bits (576), Expect = 1e-69
Identities = 83/169 (49%), Positives = 114/169 (67%)
Query: 19 KNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVA 78
K T+ +L++LR M+ + +V E IQAYI+ S DAH SEY+A D RRAFVSGF GSAG A
Sbjct: 4 KVTSELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTA 63
Query: 79 IVTTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPAL 138
I+T + A +WTDGRY LQA++++D+NWTLMK GL T ++++WLV LP GS+VGVDP +
Sbjct: 64 IITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLI 123
Query: 139 ITFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVPNGLPTTLSEK 187
I +K + G ++P+K NLVD +W ++P P TL
Sbjct: 124 IPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLD 172
Score = 127 bits (322), Expect = 2e-33
Identities = 45/111 (40%), Positives = 66/111 (59%)
Query: 179 GLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVW 238
GL T ++++WLV LP GS+VGVDP +I +K + G ++P+K NLVD +W
Sbjct: 96 GLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIW 155
Query: 239 ENKPGVPNGTVTPLGLKYTGKTIDKKLEQVREKMNEKKATVLVLTALDEVA 289
++P P + LGL YTG + K+ +R KM E+ V+TALDE+A
Sbjct: 156 TDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIA 206
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 98.2 bits (245), Expect = 1e-25
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 26/144 (18%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTD- 83
+ L A + I A +VT ++SGFTGS I+ D
Sbjct: 14 RRALSAQLAAK-----RIDAMLVTH------------LTHIRYLSGFTGSNAALIINKDL 56
Query: 84 KALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQE 143
A + TDGRY Q ++++ + +LM L+ ++ +VG + ++ +
Sbjct: 57 SARISTDGRYITQIAEQVPDIESLMARNCA------PALLSDINGPKRVGFEADYLSVSQ 110
Query: 144 FKNYETEFENGGLTMLPIKTNLVD 167
+ + ++P+ T ++
Sbjct: 111 CEELRKSAG-SDVELIPV-TGAIE 132
Score = 39.3 bits (92), Expect = 2e-04
Identities = 5/48 (10%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 188 EWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVD 235
L+ ++ +VG + ++ + + + ++P+ T ++
Sbjct: 87 PALLSDINGPKRVGFEADYLSVSQCEELRKSAG-SDVELIPV-TGAIE 132
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 88.6 bits (220), Expect = 4e-22
Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDK 84
L M ++A +VT +++GF+G+A ++T +
Sbjct: 12 LGHCLRQMAEK-----GLEALLVTH------------LTNSYYLTGFSGTAATVLITAKR 54
Query: 85 ALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEF 144
+L TD RY L A ++ + + E L + +G + ++F +
Sbjct: 55 RVLITDSRYTLLAKASVEGFDIIESRTPLKVV--AELLEAD--QIDCLGFEDQ-VSFSFY 109
Query: 145 KNYETEFENGGLTMLPIKTNLVD 167
+ + E G+T+L + V+
Sbjct: 110 QAMQAELS--GITLLAQ-SGFVE 129
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 82.8 bits (205), Expect = 4e-20
Identities = 26/143 (18%), Positives = 55/143 (38%), Gaps = 25/143 (17%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDK 84
L++ A + + + A +VT +++ F G+ +T ++
Sbjct: 8 LERFDAKLVQS-----GLDALLVTG------------QNNIYYLTDFWGTNATVFITKNR 50
Query: 85 ALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEF 144
L TD RY L A Q + + + +++ + +G D + +F +
Sbjct: 51 RLFLTDSRYTLIAKQSVHGFDIIESKDPLKDI--VKFVEVD--KLETIGFDNQV-SFAYY 105
Query: 145 KNYETEFENGGLTMLPIKTNLVD 167
+ + FE G T+ P TN ++
Sbjct: 106 QALQAIFE--GYTLSPQ-TNFME 125
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 66.1 bits (162), Expect = 1e-12
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 25/134 (18%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQ---DAHTSEYLADADQRRAFVSGFTGSAGVAIVT 81
++L ++ I A+++ + +S Y SGFTGS + +++
Sbjct: 4 SERLIQLISEE-----GIDAFLIMNIENSARASSVYF----------SGFTGSFSIILIS 48
Query: 82 TDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPA--GSKVGVDPALI 139
+ LL TD RY +QA QE D +K G + L K + + ++ +
Sbjct: 49 ENTRLLITDSRYTVQAKQETDFEVREVKGGDFI-----DVLKKTVNDLKIKTIALEEERV 103
Query: 140 TFQEFKNYETEFEN 153
+ F+ + F +
Sbjct: 104 SLSLFRRISSAFGD 117
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 63.8 bits (156), Expect = 7e-12
Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDK 84
+++LR+ I ++T + H+ Y+ + FTG+AGV +++ +
Sbjct: 7 IERLRSAFDEA-----GIDGILLT--NEHSRRYM----------ANFTGTAGVVLISKKR 49
Query: 85 ALLWTDGRYHLQASQELDN-NWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQE 143
A TD RY QAS++ + +++ VK L K+G + +T+
Sbjct: 50 AQFITDFRYVEQASKQAVGYEIVQHAGLIIDEVAK---QVKELGI-QKLGFEQDTLTYSS 105
Query: 144 FKNYETEFE 152
+ ++ +
Sbjct: 106 YSAHKEAID 114
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 55.8 bits (135), Expect = 4e-09
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 17/130 (13%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAGVAIVTTDK 84
+LRA M + I A + T H Y + ++ + G ++ K
Sbjct: 28 ZBRLRAWMAKS-----BIDAVLFT--SYHNINYYSG------WLYCYFGRKYAZVIBZVK 74
Query: 85 ALLWTDGRYHLQASQE-LDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQE 143
A+ + G + BN + K + ++G++ +T
Sbjct: 75 AVTISKGIDGGMPWRRSFGBNIVYTDWKRDNFY---SAVKKLVKGAKZIGIEHDHVTLBH 131
Query: 144 FKNYETEFEN 153
+ Z
Sbjct: 132 RRZLZKALPG 141
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 54.1 bits (131), Expect = 1e-08
Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 27/130 (20%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFTGSAG-VAIVTTD 83
++K+ M N +I A ++ Y+ SG + AG ++T +
Sbjct: 8 VKKIIEFMDKN-----SIDAVLIA--KNPNVYYI----------SGASPLAGGYILITGE 50
Query: 84 KALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQE 143
A L+ + A +E + K + K L +G++ +L +
Sbjct: 51 SATLYVPELEYEMAKEESNIPVEKFKKM--------DEFYKALEGIKSLGIESSL-PYGF 101
Query: 144 FKNYETEFEN 153
+ + +
Sbjct: 102 IEELKKKANI 111
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 51.6 bits (124), Expect = 9e-08
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 30/137 (21%)
Query: 25 LQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFVSGFT----GSAGVAIV 80
+LRA + I A I T H Y S F G +V
Sbjct: 27 QARLRAHLAAE-----NIDAAIFT--SYHNINYY----------SDFLYCSFGRPYALVV 69
Query: 81 TTDKALLWTDGRYHLQASQELDNNWTLMKAGLPTTLSEKEW----LVKNLPAGSKVGVDP 136
T D + + Q + T+ + T +++ + + LP ++G++
Sbjct: 70 TEDDVISISANIDGGQPWRR-----TVGTDNIVYTDWQRDNYFAAIQQALPKARRIGIEH 124
Query: 137 ALITFQEFKNYETEFEN 153
+ Q + +
Sbjct: 125 DHLNLQNRDKLAARYPD 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 50/236 (21%), Positives = 69/236 (29%), Gaps = 88/236 (37%)
Query: 12 PGTMATAKNTT-GILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLADADQRRAFV-S 69
P M + N T +Q + KTN+H+P Q I L + + V S
Sbjct: 335 PSPMLSISNLTQEQVQDY--VNKTNSHLPAGKQVEIS----------LVNG--AKNLVVS 380
Query: 70 GFTGS-AGVAIVTTDKALLWTDGRYHLQ---ASQELDNNWTLM---KAG-----LPTTL- 116
G S G+ + L+ A LD + K LP
Sbjct: 381 GPPQSLYGLNL--------------TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 117 --SEKEWLVKNLPAGSKVGVDPALITFQEFKN-------YETEFENGG-LTML--PIKTN 164
S LV PA + D F Y+T +G L +L I
Sbjct: 427 FHS--HLLV---PASDLINKDLVKNNV-SFNAKDIQIPVYDT--FDGSDLRVLSGSISER 478
Query: 165 LVDLV------WENK------------PGVPNGLPTTLSEKEWLVKNLPAGSKVGV 202
+VD + WE PG +GL L G+ V V
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV-------LTHRNKDGTGVRV 527
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 3e-05
Identities = 34/208 (16%), Positives = 75/208 (36%), Gaps = 49/208 (23%)
Query: 2 TIISWNYSSLPGTMATAKNTTGILQ-KLRAIMKTNTHV-----------PEAIQAY---- 45
I N++S + K +Q +LR ++K+ + +A A+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 46 --IVTSQDAHTSEYLADADQRRAFV----SGFTGSAGVAIVTTDKALLWTDGRYHLQASQ 99
++T++ +++L+ A + T +++ L + D R +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-----LKYLDCRPQDLPRE 321
Query: 100 ELDNN-------WTLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPAL--ITFQEFKNYETE 150
L N ++ GL T W N + + ++ +L + E++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW---DNWKHVNCDKLTTI-IESSLNVLEPAEYRKM--- 374
Query: 151 FENGGLTMLP----IKTNLVDLVWENKP 174
F+ L++ P I T L+ L+W +
Sbjct: 375 FDR--LSVFPPSAHIPTILLSLIWFDVI 400
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 28.3 bits (62), Expect = 2.9
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 2/114 (1%)
Query: 1 MTIISWNYSSLPGTMATAKNTTGILQKLRAIMKTNTHVPEAIQAYIVTSQDAHTSEYLAD 60
++ N + + T +L L + + H + + + D L
Sbjct: 45 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 104
Query: 61 ADQRRAFVSGFTGSAGVAIVTTDKALLWTDGRYHLQASQELDNNW--TLMKAGL 112
++ +G G+A+ L WTD LD L+ L
Sbjct: 105 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL 158
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 27.8 bits (61), Expect = 4.3
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 140 TFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVPNGLPTTLSEKEWLVKNLPAGSK 199
+ EF NYET G+++ P ++ +V++ + SE+ + + P
Sbjct: 320 IWNEFNNYETTLVIHGISLSPDGYSIA-IVYDMERVAFK--YKIASEQSFNIMFAPLYHT 376
Query: 200 VGVDPALITFQEFKNY 215
+ + ++ Y
Sbjct: 377 WTISERAVGLAWYQTY 392
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene
cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate;
HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Length = 764
Score = 27.9 bits (61), Expect = 4.8
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 165 LVDLVWENKPGVPNGLPTTLSEKEWLVKNLPAGSKVGVD 203
L +L+ + VP L E+ LV N+ +G+
Sbjct: 227 LNNLLDKFGGCVPCMYSIDLLERLSLVDNI---EHLGIG 262
>3be6_A Putative iron compound-binding protein of ABC TRA family; open
form, closed form, group III periplasmic binding protei
structural genomics; HET: MSE; 1.82A {Escherichia coli
O157} PDB: 3be5_A*
Length = 297
Score = 27.1 bits (60), Expect = 6.4
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 259 KTIDKKLEQVREKMNEKKATVLVLTALD 286
+ ++ ++ ++ +K TV V+ A
Sbjct: 145 RRYQAQINALKATLDSQKITVSVIQANQ 172
>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic
initiation factor 4E, EIF4E, translation regulator;
1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*
Length = 177
Score = 26.8 bits (59), Expect = 6.5
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 87 LWTDGRYHLQASQELDNNW--TLMKAGLPTTLSEKEWLVKNLPAGSKVGVDPALITFQEF 144
W + + W T+ +T+ + L N+ SK+ V F+
Sbjct: 10 FW----FDNPQGKSRQVAWGSTIHPIHTFSTVEDFWGLYNNIHNPSKLNVGADFHCFKNK 65
Query: 145 KN---YETEFENGGLTMLPIKTNLVDLVWEN 172
+ NGG + D W +
Sbjct: 66 IEPKWEDPICANGGKWTISCGRGKSDTFWLH 96
>3tw5_A Transglutaminase elicitor; cysteine protease, convergent evolution,
innate immunity, PA associated molecular pattern (PAMP);
HET: CXS; 2.95A {Phytophthora sojae}
Length = 367
Score = 27.1 bits (59), Expect = 7.1
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 188 EWLVKNLPAGSKVGVDPALITFQEFKNYETEFEN-------GGLTMLPIKTNLVDLVWEN 240
W+ + G V + F + Y E GG + + D +W
Sbjct: 278 SWIYETYTDGGLVS-SGQIDKFTTGQYYYYLLELDDAGEIIGGEWVYGSDDDHPDFLWLP 336
Query: 241 KPGVPNGTVTPLGLKY 256
K TVT +GL Y
Sbjct: 337 KAKPAANTVTSVGLSY 352
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB:
2vps_A 2vpm_A
Length = 652
Score = 27.0 bits (59), Expect = 9.5
Identities = 9/74 (12%), Positives = 22/74 (29%)
Query: 120 EWLVKNLPAGSKVGVDPALITFQEFKNYETEFENGGLTMLPIKTNLVDLVWENKPGVPNG 179
+ L ++E + ++P ++ +++ N P P
Sbjct: 470 AREERGENWKPSPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAI 529
Query: 180 LPTTLSEKEWLVKN 193
L + L K+
Sbjct: 530 LKAEYELTDELRKH 543
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.381
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,454,734
Number of extensions: 266582
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 24
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.4 bits)