RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7579
         (289 letters)



>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646
           {Thermotoga maritima [TaxId: 2336]}
          Length = 119

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 7/31 (22%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 259 KTIDKKLEQVREK-MNEKKATVLVLTALDEV 288
           + +++KL  + EK M  +  T+ +   ++E+
Sbjct: 80  EEVNEKLMDLTEKIMKNEWQTINLAARIEEI 110


>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein
           PSF1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 144

 Score = 24.7 bits (54), Expect = 8.3
 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 165 LVDLVWENKPGVPNGLPTTLS--EKEWL 190
           +  L WE    +PN L   ++  E EW 
Sbjct: 87  IRALRWEYGSVLPNALRFHMAAEEMEWF 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,067,184
Number of extensions: 49022
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.9 bits)