BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7580
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 49.3 bits (116), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 52 MLNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSA-DIQNHFNSE-----NCPISIHP 105
+ NLRG+D+ +NPVFFSY II + LFI ++ A ++ H + I +HP
Sbjct: 208 LFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHP 267
Query: 106 YDAIQSFLSELENL 119
Y +S LSEL+ L
Sbjct: 268 Y---KSILSELKAL 278
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MLNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSA-DIQNHF 43
+ NLRG+D+ +NPVFFSY II + LFI ++ A ++ H
Sbjct: 208 LFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHL 251
>pdb|3J0L|T Chain T, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1
pdb|3J0O|T Chain T, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas
Fitted To A 9a Cryo-Em Map: Classic Pre State 2
Length = 192
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 12 NPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPI 50
+P F +Y+ T T +F+P + ++ F+ CPI
Sbjct: 18 DPCFQNYIACTTTKSQVFVPHTAGRYQVK-KFRKTQCPI 55
>pdb|2XZM|G Chain G, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 1
pdb|2XZN|G Chain G, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 2
Length = 200
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 12 NPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPI 50
+P F +Y+ T T +F+P + ++ F+ CPI
Sbjct: 26 DPCFQNYIACTTTKSQVFVPHTAGRYQVK-KFRKTQCPI 63
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap
Endonuclease In Presence Of Metal Ions
Length = 259
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 3 NLRGADIPYNPVFFSYLIITNTDV----HLFIPESKMSADIQN 41
N+ G Y F+ Y+ + TD+ L E+ +SAD++N
Sbjct: 8 NVNGIRSAYKKGFYEYIAASGTDIVCVQELKAQEADLSADMKN 50
>pdb|3UHF|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHF|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
Length = 274
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 103 IHPYDAIQSFLSELENL--------IHFYSTWD 127
IH DAI FL E EN+ +HFY++ D
Sbjct: 225 IHSGDAIVEFLKERENIDLKNHKAKLHFYASSD 257
>pdb|3IV4|A Chain A, A Putative Oxidoreductase With A Thioredoxin Fold
Length = 112
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 96 SENCPISIHPYDAIQSFLSE 115
SE CPIS + YD FL E
Sbjct: 33 SETCPISANAYDQFNKFLYE 52
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/91 (17%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 10 PYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSY 69
+ F + +I + DV + M++ + + + +C + ML G Y S+
Sbjct: 209 AFGAGFCTTVIASPVDV---VKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSF 265
Query: 70 LIITNNDVHLFIPESKMSADIQNHFNSENCP 100
L + + +V +F+ ++ + + S P
Sbjct: 266 LRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296
>pdb|2HB0|A Chain A, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
pdb|2HB0|B Chain B, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
Length = 369
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 56 RGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPISIHPYDA 108
RG P + SYL N HL+ S + QN N CP S P A
Sbjct: 19 RGGSSPIYNILNSYLTAYNGSHHLYDRMSFLCLSSQNTLNGA-CPSSDAPGTA 70
>pdb|3VAC|A Chain A, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
pdb|3VAC|B Chain B, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
Length = 356
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 56 RGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPISIHPYDA 108
RG P + SYL N HL+ S + QN N CP S P A
Sbjct: 19 RGGSSPIYNILNSYLTAYNGSHHLYDRMSFLCLSSQNTLNGA-CPSSDAPGTA 70
>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
Length = 519
Score = 25.4 bits (54), Expect = 9.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 56 RGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPISIHP 105
RG P + SYL N HL+ S + QN N CP S P
Sbjct: 19 RGGSSPIYNILNSYLTAYNGSHHLYDRMSFLCLSSQNTLNGA-CPSSDAP 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,091,452
Number of Sequences: 62578
Number of extensions: 152350
Number of successful extensions: 374
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 19
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)