Query psy7580
Match_columns 133
No_of_seqs 143 out of 1338
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 22:04:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2413|consensus 99.7 2.1E-17 4.6E-22 139.4 6.7 104 8-119 156-269 (606)
2 KOG2413|consensus 99.3 1.6E-12 3.5E-17 110.1 2.0 65 1-74 204-268 (606)
3 PF01321 Creatinase_N: Creatin 91.4 0.2 4.2E-06 33.9 2.7 92 37-131 3-105 (132)
4 PF09162 Tap-RNA_bind: Tap, RN 56.4 11 0.00025 24.9 2.3 25 8-35 32-56 (88)
5 PF08955 BofC_C: BofC C-termin 54.7 8.2 0.00018 24.8 1.4 35 81-118 40-74 (75)
6 KOG3451|consensus 44.8 19 0.00041 22.8 1.9 22 22-44 37-58 (71)
7 PRK09795 aminopeptidase; Provi 43.6 67 0.0015 25.9 5.5 55 34-95 3-64 (361)
8 PF06331 Tbf5: Transcription f 33.9 44 0.00096 21.0 2.3 23 22-45 35-57 (68)
9 PF02512 UK: Virulence determi 33.3 22 0.00047 23.3 0.9 9 5-13 61-70 (96)
10 KOG2648|consensus 32.7 26 0.00055 29.9 1.4 17 117-133 374-390 (453)
11 PF00543 P-II: Nitrogen regula 32.1 50 0.0011 21.7 2.5 31 27-58 2-33 (102)
12 PF09902 DUF2129: Uncharacteri 25.3 47 0.001 21.1 1.4 22 23-45 30-51 (71)
13 PRK14464 ribosomal RNA large s 24.0 55 0.0012 26.9 1.9 27 33-60 293-319 (344)
14 PRK14461 ribosomal RNA large s 23.1 52 0.0011 27.4 1.6 45 8-61 311-355 (371)
15 COG0820 Predicted Fe-S-cluster 21.8 54 0.0012 27.1 1.4 8 9-16 290-297 (349)
16 PF05456 eIF_4EBP: Eukaryotic 21.7 21 0.00046 24.8 -0.8 14 1-14 55-68 (116)
17 PF02244 Propep_M14: Carboxype 20.9 97 0.0021 18.7 2.2 28 23-51 33-60 (74)
No 1
>KOG2413|consensus
Probab=99.70 E-value=2.1e-17 Score=139.36 Aligned_cols=104 Identities=38% Similarity=0.715 Sum_probs=98.6
Q ss_pred CCCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCce
Q psy7580 8 DIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNNDV 77 (133)
Q Consensus 8 Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~~ 77 (133)
..|.+||......++|.++ ..|+ ..+|+.|+..+++++ |+||||+|+|||||+++|++++.+++
T Consensus 156 ~~~~~~v~~l~~~~~G~~~-----~~Kv-~~LR~~l~~~~~~a~Vvs~LdeIaWllNLRGsDipynPv~~sY~~it~dei 229 (606)
T KOG2413|consen 156 ERPGNPVIVLDLEFAGLSV-----DDKV-DNLRKKLKEKKCDAFVVTALDEIAWLLNLRGSDIPYNPVFYSYAIITMDEI 229 (606)
T ss_pred ccCCCceEEeeccccCcch-----hHHH-HHHHHHHhhcCCcEEehhhHHHHHHHHhcccCcCCCCchhhhhhhhhhhhh
Confidence 4689999999999999999 9999 999999999999988 99999999999999999999999999
Q ss_pred EEEEeCCCCcHHHHHHhcCCCCCeEEechhhHHHHHHhhhcC
Q psy7580 78 HLFIPESKMSADIQNHFNSENCPISIHPYDAIQSFLSELENL 119 (133)
Q Consensus 78 ~lfid~~k~~~~~~~~l~~~~~~v~i~~y~~~~~~l~~~~~~ 119 (133)
.+|+|.+|++.+..+|+. ..+ |+|+||+++...++.+.+.
T Consensus 230 ~lfvd~~k~~~~~~~~~~-~~~-v~i~pY~~i~~~i~~~~~~ 269 (606)
T KOG2413|consen 230 FLFVDNSKLSDESKKHLR-EDG-VEIRPYDQIWSDIKNWASA 269 (606)
T ss_pred heeecCcccCchhHHHHh-hCc-eeeeeHHHHHHHHHHHhcc
Confidence 999999999999999998 677 9999999999999999754
No 2
>KOG2413|consensus
Probab=99.26 E-value=1.6e-12 Score=110.11 Aligned_cols=65 Identities=42% Similarity=0.831 Sum_probs=56.4
Q ss_pred CcccCCCCCCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcCCCchhhhhhhhcc
Q psy7580 1 MLNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSYLIITN 74 (133)
Q Consensus 1 llNiRG~Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~y~PV~~s~~il~~ 74 (133)
||||||+||||||||+||++++.+++.||+|.+|++.+..++++..+++.. ||..+....+-+..
T Consensus 204 llNLRGsDipynPv~~sY~~it~dei~lfvd~~k~~~~~~~~~~~~~v~i~---------pY~~i~~~i~~~~~ 268 (606)
T KOG2413|consen 204 LLNLRGSDIPYNPVFYSYAIITMDEIFLFVDNSKLSDESKKHLREDGVEIR---------PYDQIWSDIKNWAS 268 (606)
T ss_pred HHhcccCcCCCCchhhhhhhhhhhhhheeecCcccCchhHHHHhhCceeee---------eHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999987777766 66666666555543
No 3
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=91.42 E-value=0.2 Score=33.88 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=50.9
Q ss_pred HHHHHHhhhCCCCeeee----ccc---cCCcCCCchhhhhhh-hccCceEEEEeCCCCcHHHHHHhcCCCCCeEEec-hh
Q psy7580 37 ADIQNHFKSENCPINML----NLR---GADIPYNPVFFSYLI-ITNNDVHLFIPESKMSADIQNHFNSENCPISIHP-YD 107 (133)
Q Consensus 37 ~~v~~~L~~~~~~~~Ll----NlR---g~Di~y~PV~~s~~i-l~~~~~~lfid~~k~~~~~~~~l~~~~~~v~i~~-y~ 107 (133)
+++++.|++.+++++++ |++ |.. +.+..-.+++ ++.++..+|++.........+.....+- +...+ ++
T Consensus 3 ~rl~~~m~~~gid~lll~~~~ni~YltG~~--~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~~~~~~v-~~~~~~~~ 79 (132)
T PF01321_consen 3 ERLRAAMAEAGIDALLLTSPENIRYLTGFR--WQPGERPVLLVITADGAVLFVPKGEYERAAEESAPDDEV-VEYEDPYE 79 (132)
T ss_dssp HHHHHHHHHTT-SEEEEESHHHHHHHHS----ST-TSSEEEEEEESSSEEEEEEGGGHHHHHHHHTTSSEE-EEESTHHH
T ss_pred HHHHHHHHHCCCCEEEEcChhhceEecCCC--cCCCcceEEEEecccCcEEEeccccHHHHHHhhcCCceE-EEEecccc
Confidence 78999999999998822 222 332 2222222334 5666668888745444333333110122 33333 66
Q ss_pred hHHHHHHhhh--cCcEEEeecccccc
Q psy7580 108 AIQSFLSELE--NLIHFYSTWDFPMD 131 (133)
Q Consensus 108 ~~~~~l~~~~--~~~~~~~~~~~~~~ 131 (133)
++.+.|++.. .+.+-+|...+|..
T Consensus 80 ~~~~~l~~~~~~~~~igve~~~~~~~ 105 (132)
T PF01321_consen 80 AIAEALKKLGPEGKRIGVEPDSLSAA 105 (132)
T ss_dssp HHHHHHHHHTTTTSEEEEETTTSBHH
T ss_pred hHHHHHHHhCCCCCEEEEcCCcChHH
Confidence 7788888774 47778887666543
No 4
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=56.37 E-value=11 Score=24.89 Aligned_cols=25 Identities=24% Similarity=0.697 Sum_probs=17.0
Q ss_pred CCCCCceeeeeEEEeCCceeeeecCCcc
Q psy7580 8 DIPYNPVFFSYLIITNTDVHLFIPESKM 35 (133)
Q Consensus 8 Dip~nPv~~sy~~~~~~sv~Lfid~~Ki 35 (133)
.+|++|+..+|. +..+..||+..+.
T Consensus 32 ~v~F~Pv~fh~~---~~~a~FfV~D~~t 56 (88)
T PF09162_consen 32 SVPFTPVDFHYE---KNRAQFFVEDAST 56 (88)
T ss_dssp SS----EEEEEE---TTEEEEEESSHHH
T ss_pred CCCeeeeeeeee---CCEEEEEeCCHHH
Confidence 578999887775 7799999987766
No 5
>PF08955 BofC_C: BofC C-terminal domain; InterPro: IPR015050 The C-terminal domain of the bacterial protein, bypass of forespore C (BofC), contains a three-stranded beta-sheet and three alpha-helices. The exact function is unknown []. ; PDB: 2BW2_A.
Probab=54.68 E-value=8.2 Score=24.84 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=22.8
Q ss_pred EeCCCCcHHHHHHhcCCCCCeEEechhhHHHHHHhhhc
Q psy7580 81 IPESKMSADIQNHFNSENCPISIHPYDAIQSFLSELEN 118 (133)
Q Consensus 81 id~~k~~~~~~~~l~~~~~~v~i~~y~~~~~~l~~~~~ 118 (133)
+|..++.....++|. +| |+|.+-+++.+.|+.+.+
T Consensus 40 Idv~~Les~~~~~L~--~G-IrV~~~~ey~~vLe~~~~ 74 (75)
T PF08955_consen 40 IDVEKLESSDHDQLK--RG-IRVRSKEEYNSVLETFKE 74 (75)
T ss_dssp --TTTS-HHHHHHHH--H---S---HHHHHHHHHHHHH
T ss_pred cCHHHcCHhHHHHHh--CC-CeeCCHHHHHHHHHhhcC
Confidence 578888888999997 78 999999999998887653
No 6
>KOG3451|consensus
Probab=44.76 E-value=19 Score=22.76 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.6
Q ss_pred eCCceeeeecCCcchHHHHHHhh
Q psy7580 22 TNTDVHLFIPESKMSADIQNHFK 44 (133)
Q Consensus 22 ~~~sv~Lfid~~Ki~~~v~~~L~ 44 (133)
..++.+|||++++. +-++.++.
T Consensus 37 eLDdthLfV~p~~v-emvk~~le 58 (71)
T KOG3451|consen 37 ELDDTHLFVNPSIV-EMVKNELE 58 (71)
T ss_pred EeccceeeecHHHH-HHHHHHHH
Confidence 37899999999998 88887775
No 7
>PRK09795 aminopeptidase; Provisional
Probab=43.55 E-value=67 Score=25.91 Aligned_cols=55 Identities=16% Similarity=0.369 Sum_probs=32.0
Q ss_pred cchHHHHHHhhhCCCCee----eec---cccCCcCCCchhhhhhhhccCceEEEEeCCCCcHHHHHHhc
Q psy7580 34 KMSADIQNHFKSENCPIN----MLN---LRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFN 95 (133)
Q Consensus 34 Ki~~~v~~~L~~~~~~~~----LlN---lRg~Di~y~PV~~s~~il~~~~~~lfid~~k~~~~~~~~l~ 95 (133)
++ +++++.|++++++++ -.| +.|-.- ++ .+++++.++..+|+|. +...+..+...
T Consensus 3 Rl-~~l~~~m~~~~lDa~lI~~~~n~~YLTGf~g--~~---g~llIt~~~~~l~td~-ry~~qa~~~~~ 64 (361)
T PRK09795 3 LL-ASLRDWLKAQQLDAVLLSSRQNKQPHLGIST--GS---GYVVISRESAHILVDS-RYYADVEARAQ 64 (361)
T ss_pred HH-HHHHHHHHHCCCCEEEECCccccccccCccC--CC---eEEEEECCCCEEEcCc-chHHHHHhhCC
Confidence 55 789999999999988 112 223321 11 1345666677777776 33344434443
No 8
>PF06331 Tbf5: Transcription factor TFIIH complex subunit Tfb5; InterPro: IPR009400 This entry represents nucleotide excision repair (NER) proteins, such as TTDA subunit of TFIIH basal transcription factor complex (also known as subunit 5 of RNA polymerase II transcription factor B), and Rex1. These proteins have a structural motif consisting of a 2-layer sandwich structure with an alpha/beta plait topology. Nucleotide excision repair is a major pathway for repairing UV light-induced DNA damage in most organisms. Transcription/repair factor IIH (TFIIH) is essential for RNA polymerase II transcription and nucleotide excision repair. The TFIIH complex consists of ten subunits: ERCC2, ERCC3, GTF2H1, GTF2H2, GTF2H3, GTF2H4, GTF2H5, MNAT1, CDK7 and CCNH. Defects in GTF2H5 cause the disease trichothiodystrophy (TTD), therefore GTF2H5 (general transcription factor 2H subunit 5) is also known as the TTD group A (TTDA) subunit (and as Tfb5) []. The TTDA subunit is responsible for the DNA repair function of the complex. TTDA is present both bound to TFIIH, and as a free fraction that shuffles between the cytoplasm and nucleus; induction of NER-type DNA lesions shifts the balance towards TTDA's more stable association with TFIIH []. TTDA is also required for the stability of the TFIIH complex and for the presence of normal levels of TFIIH in the cell. REX1 (required for excision 1) is required for DNA repair in the single-celled, photosynthetic algae Chlamydomonas reinhardtii [], and has homologues in other eukaryotes.; GO: 0003677 DNA binding, 0006289 nucleotide-excision repair; PDB: 2JNJ_B 1YDL_A 3DGP_B 3DOM_B.
Probab=33.86 E-value=44 Score=20.97 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.8
Q ss_pred eCCceeeeecCCcchHHHHHHhhh
Q psy7580 22 TNTDVHLFIPESKMSADIQNHFKS 45 (133)
Q Consensus 22 ~~~sv~Lfid~~Ki~~~v~~~L~~ 45 (133)
-.++.+|||+++++ +.+++++.+
T Consensus 35 dLDdthlfV~~~~v-~~lk~~l~~ 57 (68)
T PF06331_consen 35 DLDDTHLFVKPDVV-EMLKEELDE 57 (68)
T ss_dssp EECTTEEEE-CCCH-HHHHHHHHH
T ss_pred EcCCCeEEEcHhHH-HHHHHHHHH
Confidence 46789999999998 899998875
No 9
>PF02512 UK: Virulence determinant
Probab=33.34 E-value=22 Score=23.30 Aligned_cols=9 Identities=56% Similarity=1.173 Sum_probs=7.5
Q ss_pred CCCCCC-CCc
Q psy7580 5 RGADIP-YNP 13 (133)
Q Consensus 5 RG~Dip-~nP 13 (133)
||+|+| ++|
T Consensus 61 rgndvpcccp 70 (96)
T PF02512_consen 61 RGNDVPCCCP 70 (96)
T ss_pred cCCCCCccCC
Confidence 899999 566
No 10
>KOG2648|consensus
Probab=32.71 E-value=26 Score=29.95 Aligned_cols=17 Identities=41% Similarity=0.749 Sum_probs=14.5
Q ss_pred hcCcEEEeeccccccCC
Q psy7580 117 ENLIHFYSTWDFPMDFY 133 (133)
Q Consensus 117 ~~~~~~~~~~~~~~~~~ 133 (133)
.++.+-...||+|||+|
T Consensus 374 ~~~~~~~~~~d~pm~~~ 390 (453)
T KOG2648|consen 374 ESEFHSSELGDYPMDYY 390 (453)
T ss_pred cccccccccccCccccc
Confidence 37777789999999997
No 11
>PF00543 P-II: Nitrogen regulatory protein P-II members of this family.; InterPro: IPR002187 In Gram-negative bacteria, the activity and concentration of glutamine synthetase (GS) is regulated in response to nitrogen source availability. PII, a tetrameric protein encoded by the glnB gene, is a component of the adenylation cascade involved in the regulation of GS activity []. In nitrogen-limiting conditions, when the ratio of glutamine to 2-ketoglutarate decreases, P-II is uridylylated on a tyrosine residue to form P-II-UMP. P-II-UMP allows the deadenylation of GS, thus activating the enzyme. Conversely, in nitrogen excess, P-II-UMP is deuridylated and then promotes the adenylation of GS. P-II also indirectly controls the transcription of the GS gene (glnA) by preventing NR-II (ntrB) to phosphorylate NR-I (ntrC) which is the transcriptional activator of glnA. Once P-II is uridylylated, these events are reversed. P-II is a protein of about 110 amino acid residues extremely well conserved. The tyrosine which is uridylated is located in the central part of the protein. In cyanobacteria, P-II seems to be phosphorylated on a serine residue rather than being uridylated. In methanogenic archaebacteria, the nitrogenase iron protein gene (nifH) is followed by two open reading frames highly similar to the eubacterial P-II protein []. These proteins could be involved in the regulation of nitrogen fixation. In the red alga, Porphyra purpurea, there is a glnB homologue encoded in the chloroplast genome. Other proteins highly similar to glnB are: Bacillus subtilis protein nrgB []. Escherichia coli hypothetical protein ybaI []. ; GO: 0030234 enzyme regulator activity, 0006808 regulation of nitrogen utilization; PDB: 1V3S_B 1V3R_C 2XZW_A 2XUL_A 2V5H_J 2XG8_C 2JJ4_F 1QY7_C 4AFF_A 2XBP_A ....
Probab=32.05 E-value=50 Score=21.72 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=24.7
Q ss_pred eeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 27 HLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 27 ~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
..++.++|+ .++.+.|.+.++..+ +...+|.
T Consensus 2 ~aIir~~~~-~~v~~aL~~~G~~g~Tv~~v~G~ 33 (102)
T PF00543_consen 2 EAIIRPEKL-EEVIEALREAGVPGMTVSEVRGR 33 (102)
T ss_dssp EEEEEGGGH-HHHHHHHHHTTGSCEEEEEEEEE
T ss_pred EEEEChhHH-HHHHHHHHHCCCCeEEEEEeEEe
Confidence 457889999 999999999888777 6666654
No 12
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=25.29 E-value=47 Score=21.06 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.9
Q ss_pred CCceeeeecCCcchHHHHHHhhh
Q psy7580 23 NTDVHLFIPESKMSADIQNHFKS 45 (133)
Q Consensus 23 ~~sv~Lfid~~Ki~~~v~~~L~~ 45 (133)
+.=+.||+|++++ +++.+.|++
T Consensus 30 ~kYvvlYvn~~~~-e~~~~kl~~ 51 (71)
T PF09902_consen 30 MKYVVLYVNEEDV-EEIIEKLKK 51 (71)
T ss_pred ccEEEEEECHHHH-HHHHHHHhc
Confidence 5678999999999 888888875
No 13
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.03 E-value=55 Score=26.89 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=16.7
Q ss_pred CcchHHHHHHhhhCCCCeeeeccccCCc
Q psy7580 33 SKMSADIQNHFKSENCPINMLNLRGADI 60 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~LlNlRg~Di 60 (133)
+++ .++.+.|.++|+...+-.-||.|+
T Consensus 293 ~~i-~~f~~~L~~~gi~~tiR~~~G~di 319 (344)
T PRK14464 293 ERI-VAMARYLHRRGVLTKVRNSAGQDV 319 (344)
T ss_pred HHH-HHHHHHHHHCCceEEEECCCCCch
Confidence 344 566777776776666555556655
No 14
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.10 E-value=52 Score=27.38 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcC
Q psy7580 8 DIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIP 61 (133)
Q Consensus 8 Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~ 61 (133)
=|||||+--+. + .... .+++ .+.++.|.++|+.+.+-.-||.||.
T Consensus 311 LIp~Np~~~~~--~-~~ps-----~~~i-~~F~~~L~~~gi~vtiR~s~G~DI~ 355 (371)
T PRK14461 311 LIPWNPVPGTP--L-GRSE-----RERV-TTFQRILTDYGIPCTVRVERGVEIA 355 (371)
T ss_pred EecCCCCCCCC--C-CCCC-----HHHH-HHHHHHHHHCCceEEEeCCCCcChh
Confidence 37899964332 1 1122 4455 7888999888888776666688763
No 15
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=21.76 E-value=54 Score=27.11 Aligned_cols=8 Identities=75% Similarity=1.049 Sum_probs=3.6
Q ss_pred CCCCceee
Q psy7580 9 IPYNPVFF 16 (133)
Q Consensus 9 ip~nPv~~ 16 (133)
|||||+.-
T Consensus 290 IP~Np~~~ 297 (349)
T COG0820 290 IPYNPVPG 297 (349)
T ss_pred eecCCCCC
Confidence 44555433
No 16
>PF05456 eIF_4EBP: Eukaryotic translation initiation factor 4E binding protein (EIF4EBP); InterPro: IPR008606 This family consists of several eukaryotic translation initiation factor 4E binding proteins (EIF4EBP1, -2 and -3). Translation initiation in eukaryotes is mediated by the cap structure (m7GpppN, where N is any nucleotide) present at the 5' end of all cellular mRNAs, except organellar. The cap is recognised by eukaryotic initiation factor 4F (eIF4F), which consists of three polypeptides, including eIF4E, the cap-binding protein subunit. The interaction of the cap with eIF4E facilitates the binding of the ribosome to the mRNA. eIF4E activity is regulated in part by translational repressors, 4E-BP1, 4E-BP2 and 4E-BP3 which bind to it and prevent its assembly into eIF4F [].; GO: 0008190 eukaryotic initiation factor 4E binding, 0045947 negative regulation of translational initiation; PDB: 2JGB_B 2V8Y_F 1WKW_B 3HXG_C 3U7X_D 3M94_C 3M93_C 2V8X_B 3HXI_C 2V8W_B ....
Probab=21.74 E-value=21 Score=24.83 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=5.1
Q ss_pred CcccCCCCCCCCce
Q psy7580 1 MLNLRGADIPYNPV 14 (133)
Q Consensus 1 llNiRG~Dip~nPv 14 (133)
|||+|+|.+..+|=
T Consensus 55 LL~~RnSPlSrTPP 68 (116)
T PF05456_consen 55 LLECRNSPLSRTPP 68 (116)
T ss_dssp HHCTCG--------
T ss_pred HHHhcCCCcccCCC
Confidence 68999998888885
No 17
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=20.91 E-value=97 Score=18.74 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=23.1
Q ss_pred CCceeeeecCCcchHHHHHHhhhCCCCee
Q psy7580 23 NTDVHLFIPESKMSADIQNHFKSENCPIN 51 (133)
Q Consensus 23 ~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~ 51 (133)
|+.+++.|.+++. ..+.+.|++.+.+..
T Consensus 33 ~~~~dv~V~p~~~-~~f~~~L~~~~i~~~ 60 (74)
T PF02244_consen 33 GRPVDVMVPPEKL-EEFEELLKEHGIEYE 60 (74)
T ss_dssp TSEEEEEEEGGGH-HHHHHHHHHTT-EEE
T ss_pred CCeEEEEECHHHH-HHHHHHHHHCCCcEE
Confidence 6789999999998 899999988776544
Done!