Query psy7580
Match_columns 133
No_of_seqs 143 out of 1338
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 22:04:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ctz_A XAA-Pro aminopeptidase 98.8 1.1E-09 3.8E-14 93.5 2.4 102 9-117 161-279 (623)
2 3ctz_A XAA-Pro aminopeptidase 98.0 1.2E-05 4.1E-10 68.6 6.6 85 1-95 208-303 (623)
3 3pn9_A Proline dipeptidase; st 97.1 7.4E-05 2.5E-09 50.9 -0.4 89 32-131 4-110 (138)
4 3q6d_A Proline dipeptidase; st 96.7 0.0009 3.1E-08 52.7 2.9 86 32-131 4-104 (356)
5 3il0_A Aminopeptidase P; XAA-P 95.7 0.0098 3.3E-07 39.8 3.7 84 33-131 6-103 (131)
6 3ovk_A Aminopeptidase P, XAA-P 94.4 0.045 1.5E-06 36.9 4.1 85 33-132 10-108 (132)
7 2v3z_A XAA-Pro aminopeptidase; 94.4 0.025 8.5E-07 45.9 3.2 85 33-123 10-128 (440)
8 2zsg_A Aminopeptidase P, putat 93.3 0.095 3.3E-06 40.8 4.6 85 33-129 2-104 (359)
9 1kp0_A Creatine amidinohydrola 92.6 0.061 2.1E-06 42.7 2.7 90 32-129 25-128 (402)
10 3pn9_A Proline dipeptidase; st 91.5 0.72 2.5E-05 30.6 6.7 100 1-115 33-136 (138)
11 1chm_A Creatine amidinohydrola 91.2 0.029 9.9E-07 44.8 -0.7 96 21-124 18-123 (401)
12 4ege_A Dipeptidase PEPE; struc 89.7 0.042 1.4E-06 43.7 -1.0 99 13-124 2-118 (378)
13 1wy2_A XAA-Pro dipeptidase; st 84.2 0.29 9.8E-06 38.3 0.9 46 32-85 5-61 (351)
14 3qoc_A Putative metallopeptida 82.7 0.63 2.2E-05 31.3 2.1 89 32-131 11-109 (135)
15 3o5v_A X-Pro dipeptidase; crea 81.8 0.51 1.7E-05 31.4 1.3 88 33-131 3-108 (132)
16 1wn1_A Dipeptidase; prolidase, 78.9 1.1 3.6E-05 35.1 2.5 50 34-87 2-62 (356)
17 3q6d_A Proline dipeptidase; st 75.9 4.3 0.00015 31.3 5.2 95 1-116 33-130 (356)
18 2v3z_A XAA-Pro aminopeptidase; 73.2 1.2 4E-05 36.0 1.3 34 3-36 33-84 (440)
19 4fkc_A XAA-Pro aminopeptidase; 69.2 1.6 5.5E-05 34.1 1.3 79 32-117 16-108 (377)
20 3il0_A Aminopeptidase P; XAA-P 69.1 13 0.00043 24.1 5.6 92 2-115 35-129 (131)
21 4b28_A Metallopeptidase, famil 67.8 1.3 4.3E-05 36.4 0.4 50 33-85 81-142 (470)
22 3kz5_E Protein SOPB; partition 65.9 8.8 0.0003 22.1 3.6 27 18-44 15-41 (52)
23 3i7m_A XAA-Pro dipeptidase; st 65.7 4.5 0.00015 26.8 2.8 48 34-83 5-60 (140)
24 3ooo_A Proline dipeptidase; st 58.8 5.6 0.00019 26.0 2.3 90 33-131 3-108 (132)
25 1kp0_A Creatine amidinohydrola 52.2 30 0.001 26.9 5.8 102 1-116 54-157 (402)
26 2zsg_A Aminopeptidase P, putat 47.8 75 0.0026 24.1 7.5 96 2-117 36-134 (359)
27 1chm_A Creatine amidinohydrola 39.2 67 0.0023 25.0 6.0 102 7-117 54-158 (401)
28 3biq_A FACT complex subunit SP 38.5 11 0.00039 30.1 1.4 73 32-106 14-107 (467)
29 3ncq_A Nitrogen regulatory pro 35.3 28 0.00097 23.0 2.8 32 25-57 3-35 (119)
30 3t9z_A GLNK3, nitrogen regulat 33.6 27 0.00093 23.0 2.5 33 25-58 3-36 (118)
31 2bw2_A Bypass of forespore C; 31.9 17 0.00059 25.1 1.3 35 81-118 103-137 (140)
32 4aff_A Nitrogen regulatory pro 30.9 31 0.0011 22.6 2.4 33 25-58 3-36 (116)
33 1ydl_A TFIIH, general transcri 30.9 38 0.0013 21.1 2.6 25 20-45 43-67 (79)
34 2eg2_A Nitrogen regulatory pro 29.0 35 0.0012 21.9 2.4 32 26-58 4-36 (112)
35 2j9c_A GLNK1, hypothetical nit 28.5 42 0.0014 21.9 2.7 33 25-58 5-38 (119)
36 1vfj_A Nitrogen regulatory pro 28.3 35 0.0012 22.1 2.3 33 25-58 3-36 (116)
37 3mhy_A PII-like protein PZ; PI 28.2 29 0.001 22.5 1.9 33 25-58 3-36 (112)
38 2gjf_A Designed protein; proca 28.1 44 0.0015 19.8 2.6 28 23-51 46-73 (78)
39 1hwu_A PII protein; herbaspiri 27.5 37 0.0012 21.8 2.3 32 26-58 4-36 (112)
40 1vjq_A Designed protein; struc 27.4 53 0.0018 19.4 2.9 28 23-51 38-65 (79)
41 2cz4_A Hypothetical protein TT 27.0 50 0.0017 21.7 2.9 35 23-58 25-60 (119)
42 2ns1_B Nitrogen regulatory pro 26.1 47 0.0016 21.5 2.6 34 24-58 6-40 (116)
43 3bzq_A Nitrogen regulatory pro 25.9 45 0.0015 21.4 2.5 33 25-58 5-38 (114)
44 2gw8_A PII signal transduction 25.0 48 0.0016 21.3 2.5 33 25-58 5-38 (114)
45 3dgp_B RNA polymerase II trans 24.5 34 0.0012 20.8 1.5 22 23-45 34-55 (71)
46 3l7p_A Putative nitrogen regul 24.2 32 0.0011 22.5 1.5 34 24-58 4-39 (115)
47 2o66_A PII protein; regulation 23.3 56 0.0019 22.0 2.6 35 24-59 14-49 (135)
48 3ce8_A Putative PII-like nitro 22.2 53 0.0018 21.8 2.3 30 26-56 26-57 (120)
49 3hxi_C Eukaryotic translation 20.0 18 0.00063 16.8 -0.3 9 1-9 13-21 (21)
No 1
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens}
Probab=98.81 E-value=1.1e-09 Score=93.45 Aligned_cols=102 Identities=35% Similarity=0.535 Sum_probs=88.2
Q ss_pred CCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCceE
Q psy7580 9 IPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNNDVH 78 (133)
Q Consensus 9 ip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~~~ 78 (133)
.|.+|++...+.+++.+. .+|+ +++++.|++++++++ |+|+||.|++|+|+++++++++.++..
T Consensus 161 k~~~e~~~~~~~~ag~~~-----~~rl-~~lr~~m~e~~~dallit~~~~i~yl~~~~G~dv~~~pi~~~~llv~~~~~~ 234 (623)
T 3ctz_A 161 RPCKPLLTLGLDYTGISW-----KDKV-ADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIM 234 (623)
T ss_dssp CCCCCCEECCHHHHSSCH-----HHHH-HHHHHHHHTTTEEEEEECCHHHHHHHHTEECCSSSSSCCCSCEEEEESSCEE
T ss_pred CCchhhhhcchhhcChhH-----HHHH-HHHHHHHHHcCCCEEEECCHHHHHHHhCCCCccCCCCcceeEEEEEecCCcE
Confidence 356788999999999999 8898 899999999998875 889999999999999999999988899
Q ss_pred EEEeCCCCcH-HHHHHhcC------CCCCeEEechhhHHHHHHhhh
Q psy7580 79 LFIPESKMSA-DIQNHFNS------ENCPISIHPYDAIQSFLSELE 117 (133)
Q Consensus 79 lfid~~k~~~-~~~~~l~~------~~~~v~i~~y~~~~~~l~~~~ 117 (133)
+|+++.++.. ++.+++.. ..+ +++++|+++.+.|+.+.
T Consensus 235 l~v~~~~~~~~~~~~~l~~~~~~p~~~~-v~v~~y~~~~~~l~~l~ 279 (623)
T 3ctz_A 235 LFIDGDRIDAPSVKEHLLLDLGLEAEYR-IQVHPYKSILSELKALC 279 (623)
T ss_dssp EECCSGGGGSHHHHHHTTTTSCCCGGGC-EEEECGGGHHHHHHHHH
T ss_pred EEEechhcCHHHHHHHHhhccccccCCc-eEEEEhHHHHHHHHHHH
Confidence 9999988776 77888820 146 99999999999998885
No 2
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing, cytoplasm, hydrolase, manganese, metal-binding, metalloprotease, protease; HET: P6G; 1.60A {Homo sapiens}
Probab=97.96 E-value=1.2e-05 Score=68.56 Aligned_cols=85 Identities=26% Similarity=0.544 Sum_probs=60.0
Q ss_pred CcccCCCCCCCCceeeeeEEEeCCceeeeecCCcchH-HHHHHhh-------hCCCCeeeeccccCCcCCCchhhhhhhh
Q psy7580 1 MLNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSA-DIQNHFK-------SENCPINMLNLRGADIPYNPVFFSYLII 72 (133)
Q Consensus 1 llNiRG~Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~-~v~~~L~-------~~~~~~~LlNlRg~Di~y~PV~~s~~il 72 (133)
|+|+||+|++++|++.++++++.+...||+++.++.. ++++++. ..+++.. +|..+.-...-+
T Consensus 208 l~~~~G~dv~~~pi~~~~llv~~~~~~l~v~~~~~~~~~~~~~l~~~~~~p~~~~v~v~---------~y~~~~~~l~~l 278 (623)
T 3ctz_A 208 LFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVH---------PYKSILSELKAL 278 (623)
T ss_dssp HHTEECCSSSSSCCCSCEEEEESSCEEEECCSGGGGSHHHHHHTTTTSCCCGGGCEEEE---------CGGGHHHHHHHH
T ss_pred HhCCCCccCCCCcceeEEEEEecCCcEEEEechhcCHHHHHHHHhhccccccCCceEEE---------EhHHHHHHHHHH
Confidence 5799999999999999999999888999999988855 7888884 1233333 566554443333
Q ss_pred cc---CceEEEEeCCCCcHHHHHHhc
Q psy7580 73 TN---NDVHLFIPESKMSADIQNHFN 95 (133)
Q Consensus 73 ~~---~~~~lfid~~k~~~~~~~~l~ 95 (133)
.. ..-.+.+|+. .+..+.+.+.
T Consensus 279 ~~~~~~~~~i~id~~-~~~~l~~~l~ 303 (623)
T 3ctz_A 279 CADLSPREKVWVSDK-ASYAVSETIP 303 (623)
T ss_dssp HHTCCTTCEEEEETT-SBHHHHHHSC
T ss_pred HhcccCCeEEEECch-hhHHHHHhcc
Confidence 21 1246778876 4566777775
No 3
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=97.05 E-value=7.4e-05 Score=50.95 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccC-ceEEEEeCCCCcHHHHHHhcCCCCC
Q psy7580 32 ESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNN-DVHLFIPESKMSADIQNHFNSENCP 100 (133)
Q Consensus 32 ~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~-~~~lfid~~k~~~~~~~~l~~~~~~ 100 (133)
.+|+ +++++.|++++++++ |.|.+|++.+ .+++++++.+ +..+|+|......+ . ... +
T Consensus 4 ~~Rl-~~lr~~m~~~~~da~li~~~~ni~yltGf~g~~~e----r~~~lli~~~g~~~l~~d~~~~~~a-~-~~~---~- 72 (138)
T 3pn9_A 4 MSKL-QQILTYLESEKLDVAVVSDPVTINYLTGFYSDPHE----RQMFLFVLADQEPLLFVPALEVERA-S-STV---S- 72 (138)
T ss_dssp CCHH-HHHHHHHHHHTCSEEEECCHHHHHHHHSCCCCCTT----SCCEEEEESSSCCEEEEEGGGHHHH-H-HHC---S-
T ss_pred HHHH-HHHHHHHHHCCCCEEEEcCcCceeeecCCCCCCcc----ceEEEEEeCCCCEEEEEeccchhhh-h-ccC---C-
Confidence 4577 899999999999988 7788888765 3455677765 89999997766543 3 222 3
Q ss_pred eEEechh---hHHHHHHhh----hcCcEEEeecccccc
Q psy7580 101 ISIHPYD---AIQSFLSEL----ENLIHFYSTWDFPMD 131 (133)
Q Consensus 101 v~i~~y~---~~~~~l~~~----~~~~~~~~~~~~~~~ 131 (133)
+++..|. +..+.+..+ ..+.+.+|....|..
T Consensus 73 ~~v~~~~~~~~~~~~l~~~l~~~~~~~vg~e~~~~~~~ 110 (138)
T 3pn9_A 73 FPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLILT 110 (138)
T ss_dssp SCEEEECTTSCHHHHHHHHSCCCCCCEEEECTTTCCHH
T ss_pred CcEEEEcCCCCHHHHHHHHHHhccCCeEEEecCcCCHH
Confidence 5566663 344444443 245677776555543
No 4
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis}
Probab=96.67 E-value=0.0009 Score=52.68 Aligned_cols=86 Identities=12% Similarity=0.119 Sum_probs=59.3
Q ss_pred CCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCceEEEEeCCCCcHHHHHHhcCCCCCe
Q psy7580 32 ESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPI 101 (133)
Q Consensus 32 ~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~~~lfid~~k~~~~~~~~l~~~~~~v 101 (133)
.+|+ +++|+.|++++++++ |+|.||+| ++++++.++..+|+|.. ...+..+.+. + +
T Consensus 4 ~~Rl-~~lr~~m~~~giDa~lI~~~~ni~YLtGf~g~~--------~~llvt~~~~~l~~d~r-~~~~a~~~~~---~-~ 69 (356)
T 3q6d_A 4 MEKI-ERLRSAFDEAGIDGILLTNEHSRRYMANFTGTA--------GVVLISKKRAQFITDFR-YVEQASKQAV---G-Y 69 (356)
T ss_dssp HHHH-HHHHTTHHHHTCSEEEECCHHHHHHHHCCCSSS--------CEEEEESSCEEEEECGG-GHHHHHHHST---T-S
T ss_pred HHHH-HHHHHHHHHcCCCEEEECChhhceEccCCCCCC--------eEEEEECCCeEEEEChh-hHHHHHhhCC---C-C
Confidence 3577 899999999999988 77888876 46677888889999864 3344555553 3 5
Q ss_pred EEec-----hhhHHHHHHhhhcCcEEEeecccccc
Q psy7580 102 SIHP-----YDAIQSFLSELENLIHFYSTWDFPMD 131 (133)
Q Consensus 102 ~i~~-----y~~~~~~l~~~~~~~~~~~~~~~~~~ 131 (133)
++.. ++.+.+.|++...+.+.++.+.+|..
T Consensus 70 ~v~~~~~~~~~~l~~~l~~~~~~~igve~~~~~~~ 104 (356)
T 3q6d_A 70 EIVQHAGLIIDEVAKQVKELGIQKLGFEQDTLTYS 104 (356)
T ss_dssp EEEECSSCHHHHHHHHHHHHTCSEEEEETTTSBHH
T ss_pred EEEEeCCCHHHHHHHHHHhcCCceEEEcCccCCHH
Confidence 5555 44555555555556677777666654
No 5
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Probab=95.69 E-value=0.0098 Score=39.82 Aligned_cols=84 Identities=7% Similarity=0.073 Sum_probs=56.1
Q ss_pred CcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCceEEEEeCCCCcHHHHHHhcCCCCCeE
Q psy7580 33 SKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPIS 102 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~~~lfid~~k~~~~~~~~l~~~~~~v~ 102 (133)
+|+ +++++.|++++++++ |.+.+|++ ++++++.++..+|+|..-. ....+... + .+
T Consensus 6 ~Rl-~~lr~~m~~~~~da~li~~~~ni~YltGf~~~~--------~~llv~~~~~~l~~d~r~~-~~a~~~~~---~-~~ 71 (131)
T 3il0_A 6 RRL-ERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTN--------ATVFITKNRRLFLTDSRYT-LIAKQSVH---G-FD 71 (131)
T ss_dssp GHH-HHHHHHHHHHTCSEEEECSHHHHHHHHSCCCSS--------EEEEEESSCEEEEECTTSH-HHHHHHCC---S-SE
T ss_pred HHH-HHHHHHHHHcCCCEEEEecccccEEEeCcccCC--------eEEEEECCCCEEEECchhH-HHHHHhCC---C-cE
Confidence 566 899999999999988 44445543 3567777888999986443 34444443 4 67
Q ss_pred EechhhHHHHHHhh-h-c--CcEEEeecccccc
Q psy7580 103 IHPYDAIQSFLSEL-E-N--LIHFYSTWDFPMD 131 (133)
Q Consensus 103 i~~y~~~~~~l~~~-~-~--~~~~~~~~~~~~~ 131 (133)
+..|++..+.+..+ . . +.+-++.. .|..
T Consensus 72 v~~~~~~~~~l~~~l~~~~~~~ig~e~~-~~~~ 103 (131)
T 3il0_A 72 IIESKDPLKDIVKFVEVDKLETIGFDNQ-VSFA 103 (131)
T ss_dssp EEECSCHHHHHHHHHHHTTCCEEEEETT-SCHH
T ss_pred EEEeCCHHHHHHHHHHhcCCCEEEEcCC-CCHH
Confidence 88777666666654 2 2 45667766 6544
No 6
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes}
Probab=94.40 E-value=0.045 Score=36.88 Aligned_cols=85 Identities=8% Similarity=0.106 Sum_probs=51.8
Q ss_pred CcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCceEEEEeCCCCcHHHHHHhcCCCCCeE
Q psy7580 33 SKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPIS 102 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~~~lfid~~k~~~~~~~~l~~~~~~v~ 102 (133)
+|+ +++++.|++++++++ |.+.+|++ .+++++.++..+|+|. +......+... + .+
T Consensus 10 ~Rl-~~l~~~m~~~~~da~li~~~~n~~YltGf~~~~--------~~~vv~~~~~~l~td~-ry~~qa~~~~~---~-~~ 75 (132)
T 3ovk_A 10 QRL-GHCLRQMAEKGLEALLVTHLTNSYYLTGFSGTA--------ATVLITAKRRVLITDS-RYTLLAKASVE---G-FD 75 (132)
T ss_dssp HHH-HHHHHHHHHHTCCEEEECSHHHHHHHHCCCCSC--------CEEEEESSCEEEEECT-TTHHHHHHHCT---T-CE
T ss_pred HHH-HHHHHHHHHCCCCEEEEcCcccceeeeCccCCC--------EEEEEECCccEEEECc-hhHHHHHHhCC---C-cE
Confidence 466 899999999999988 33333332 3456677889999985 44444444443 3 55
Q ss_pred Eechh----hHHHHHHhhhcCcEEEeeccccccC
Q psy7580 103 IHPYD----AIQSFLSELENLIHFYSTWDFPMDF 132 (133)
Q Consensus 103 i~~y~----~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (133)
+..|. .+.+.++....+.+-++.+ +|..+
T Consensus 76 v~~~~~~~~~l~~~l~~~~~~~ig~e~~-~~~~~ 108 (132)
T 3ovk_A 76 IIESRTPLKVVAELLEADQIDCLGFEDQ-VSFSF 108 (132)
T ss_dssp EEECSCHHHHHHHHHHHHTCCEEEEETT-SBHHH
T ss_pred EEEeCCCHHHHHHHHHHcCCCEEEEcCC-CCHHH
Confidence 65554 3444444433456667766 66543
No 7
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ...
Probab=94.38 E-value=0.025 Score=45.95 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=56.4
Q ss_pred CcchHHHHHHhhhCCCCee----eeccccCCcCCC-------------chhhhhhhhcc-----CceEEEEeCCCCcHHH
Q psy7580 33 SKMSADIQNHFKSENCPIN----MLNLRGADIPYN-------------PVFFSYLIITN-----NDVHLFIPESKMSADI 90 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~----LlNlRg~Di~y~-------------PV~~s~~il~~-----~~~~lfid~~k~~~~~ 90 (133)
+|+ +++++.|++.+ .++ ..|+||+|++|+ +...+++++.. ++..||+++.....++
T Consensus 10 ~R~-~~l~~~m~~~~-~~ll~~~~~~~r~~D~~y~frq~~n~~YltG~~~~~~~lvi~~~~~~~~~~~Lf~~~~~~~~~~ 87 (440)
T 2v3z_A 10 RRR-QALVEQMQPGS-AALIFAAPEVTRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEI 87 (440)
T ss_dssp HHH-HHHHHHSCSSE-EEEEECCCCCEEETTEECCCCCCHHHHHHHCCCCSSCEEEEEECSSSCEEEEEEECCCCHHHHH
T ss_pred HHH-HHHHHhcccCC-EEEEECCCccccCCCCCCcccCCCCEEEecCCCCCCEEEEEEecCCCCceEEEEecCCCcccce
Confidence 466 78899997655 344 457899999998 55556666754 3588999876644333
Q ss_pred -----------HHHhcCCCCCeEEechhhHHHHHHhhh-cCcEEE
Q psy7580 91 -----------QNHFNSENCPISIHPYDAIQSFLSELE-NLIHFY 123 (133)
Q Consensus 91 -----------~~~l~~~~~~v~i~~y~~~~~~l~~~~-~~~~~~ 123 (133)
.+.++ . -.+.+++++.+.|..+. +.+.+|
T Consensus 88 w~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~i~ 128 (440)
T 2v3z_A 88 WFGRRLGQDAAPEKLG--V--DRALAFSEINQQLYQLLNGLDVVY 128 (440)
T ss_dssp HHCCCCHHHHHHHHHT--C--SEEEEGGGHHHHHHHHHTTCSEEE
T ss_pred ecCCCCCHHHHHHhcC--C--CEEeeHHHHHHHHHHHHcCCCEEE
Confidence 22232 1 25789999999988874 334444
No 8
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Probab=93.25 E-value=0.095 Score=40.84 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=49.1
Q ss_pred CcchHHHHHHhhhCCCCeeee----cc-----c---cCCcCCCchhhhhhhhccCceEEEEeCCCCcHHHHHHhcCCCCC
Q psy7580 33 SKMSADIQNHFKSENCPINML----NL-----R---GADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCP 100 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~Ll----Nl-----R---g~Di~y~PV~~s~~il~~~~~~lfid~~k~~~~~~~~l~~~~~~ 100 (133)
+|+ +++++.|+++++++++. |+ + |-.-+ .++++++.++..+|+|......+ .+. . +
T Consensus 2 ~Rl-~~Lr~~m~~~~lDa~li~~~~ni~~~~~~YLtGf~~~-----~~~llI~~~~~~L~~d~r~~~~a-~~~-~---~- 69 (359)
T 2zsg_A 2 DRS-ERLIQLISEEGIDAFLIMNIENSARASSVYFSGFTGS-----FSIILISENTRLLITDSRYTVQA-KQE-T---D- 69 (359)
T ss_dssp CCH-HHHHHHHHTTTCCEEEEEESTTTTHHHHHHHHCCCSS-----CEEEEEETTEEEEEECTTTHHHH-HHH-C---C-
T ss_pred hHH-HHHHHHHHHCCCcEEEEEChhHcccccCeeEeccCCC-----CEEEEEECCCCEEEECcccHHHH-HhC-C---C-
Confidence 466 89999999999887722 22 1 11100 13566677778899987654433 333 3 4
Q ss_pred eEEech------hhHHHHHHhhhcCcEEEeecccc
Q psy7580 101 ISIHPY------DAIQSFLSELENLIHFYSTWDFP 129 (133)
Q Consensus 101 v~i~~y------~~~~~~l~~~~~~~~~~~~~~~~ 129 (133)
+++..| +.+.+.|++...+++-+|.+.+|
T Consensus 70 ~~v~~~~~~~~~~~l~~~L~~~~~~~vgvd~~~~~ 104 (359)
T 2zsg_A 70 FEVREVKGGDFIDVLKKTVNDLKIKTIALEEERVS 104 (359)
T ss_dssp SEEEEC---CCHHHHHHHHHHTTCCEEEECGGGSB
T ss_pred CEEEEecCcchHHHHHHHHHhcCCCEEEEeCCcCC
Confidence 677766 33444444433445666655444
No 9
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Probab=92.62 E-value=0.061 Score=42.67 Aligned_cols=90 Identities=6% Similarity=-0.124 Sum_probs=56.6
Q ss_pred CCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCceEEEEeCCCCcHHHHHHhcCCCCCe
Q psy7580 32 ESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPI 101 (133)
Q Consensus 32 ~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~~~lfid~~k~~~~~~~~l~~~~~~v 101 (133)
.+|+ +++++.|++++++++ +.|.+|++. ..| ++++++.++..+|+|......+..+ +. ... +
T Consensus 25 ~~Rl-~~Lr~~m~~~~lDa~li~~~~ni~yltgf~~s~~-~~p---~~llV~~~~~~l~~~~~~~~~a~~~-~~-~~~-v 96 (402)
T 1kp0_A 25 TRRZ-BRLRAWMAKSBIDAVLFTSYHNINYYSGWLYCYF-GRK---YAZVIBZVKAVTISKGIDGGMPWRR-SF-GBN-I 96 (402)
T ss_dssp HHHH-HHHHHHHHHHTCSEEEECSHHHHHHHHSCCCCCT-TCC---CEEEECSSCEEEEEEGGGTTHHHHH-CS-SEE-E
T ss_pred HHHH-HHHHHHHHHCCCCEEEEcCCCCceEecCCCCCCC-Cce---EEEEEeCCCCEEEeccchhhhhHHh-cc-Ccc-e
Confidence 4577 899999999999877 666676543 233 4566777789999997776654444 32 234 5
Q ss_pred EEech--hhHHHHHHhhh--cCcEEEeecccc
Q psy7580 102 SIHPY--DAIQSFLSELE--NLIHFYSTWDFP 129 (133)
Q Consensus 102 ~i~~y--~~~~~~l~~~~--~~~~~~~~~~~~ 129 (133)
.+.++ .+..+.|..+. .+++-+|....|
T Consensus 97 ~~~~~~~~~~~~~l~~~l~~~~~igvd~~~~~ 128 (402)
T 1kp0_A 97 VYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVT 128 (402)
T ss_dssp EECSSSTTHHHHHHHHHHTTCSEEEECTTTCB
T ss_pred EeccccccCHHHHHHHHhccCCEEEEecCCCC
Confidence 55555 34566666652 445555544333
No 10
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=91.46 E-value=0.72 Score=30.57 Aligned_cols=100 Identities=7% Similarity=0.043 Sum_probs=59.6
Q ss_pred CcccCCCCCCCCceeeeeEEEeCC-ceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcCCCchhhhhhhhcc-CceE
Q psy7580 1 MLNLRGADIPYNPVFFSYLIITNT-DVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSYLIITN-NDVH 78 (133)
Q Consensus 1 llNiRG~Dip~nPv~~sy~~~~~~-sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~y~PV~~s~~il~~-~~~~ 78 (133)
|.|.||++.+ ..++++++.+ +..||+|.-+. .+++ + ..+.+... .+.. -+|.-..-..+.. +.-.
T Consensus 33 ltGf~g~~~e----r~~~lli~~~g~~~l~~d~~~~-~~a~-~--~~~~~v~~--~~~~---~~~~~~l~~~l~~~~~~~ 99 (138)
T 3pn9_A 33 LTGFYSDPHE----RQMFLFVLADQEPLLFVPALEV-ERAS-S--TVSFPVVG--YVDS---ENPWQKIKHALPQLDFKR 99 (138)
T ss_dssp HHSCCCCCTT----SCCEEEEESSSCCEEEEEGGGH-HHHH-H--HCSSCEEE--ECTT---SCHHHHHHHHSCCCCCCE
T ss_pred ecCCCCCCcc----ceEEEEEeCCCCEEEEEeccch-hhhh-c--cCCCcEEE--EcCC---CCHHHHHHHHHHhccCCe
Confidence 4688998876 5677888755 89999998887 5555 3 23444331 1100 1222111122222 2457
Q ss_pred EEEeCCCCcHHHHHHhcCC--CCCeEEechhhHHHHHHh
Q psy7580 79 LFIPESKMSADIQNHFNSE--NCPISIHPYDAIQSFLSE 115 (133)
Q Consensus 79 lfid~~k~~~~~~~~l~~~--~~~v~i~~y~~~~~~l~~ 115 (133)
+-+|+..++....+.|. + .+ +++.+-+.+...++.
T Consensus 100 vg~e~~~~~~~~~~~l~-~~~~~-~~~v~~~~~i~~lR~ 136 (138)
T 3pn9_A 100 VAVEFDNLILTKYHGLK-TVFET-AEFDNLTPRIQRMRL 136 (138)
T ss_dssp EEECTTTCCHHHHHHHH-HHSTT-CEEEECHHHHHHHTT
T ss_pred EEEecCcCCHHHHHHHH-HHCCC-CeeeehHHHHHHHhh
Confidence 88898888887766665 1 24 678777777666653
No 11
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1
Probab=91.24 E-value=0.029 Score=44.81 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=59.5
Q ss_pred EeCCceeeeecCCcchHHHHHHhhhCCCCeeee----ccc-cCCcCCCchhhhhhh-hccCceEEEEeCCCCcHHHHHHh
Q psy7580 21 ITNTDVHLFIPESKMSADIQNHFKSENCPINML----NLR-GADIPYNPVFFSYLI-ITNNDVHLFIPESKMSADIQNHF 94 (133)
Q Consensus 21 ~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~Ll----NlR-g~Di~y~PV~~s~~i-l~~~~~~lfid~~k~~~~~~~~l 94 (133)
+++++. .+|+ +++++.|+++++++++. |++ =+|..|+|+...+++ ++.++..++++.........+.+
T Consensus 18 ~~~~e~-----~~R~-~~l~~~m~~~~~da~li~~~~ni~yltg~~~~~~~~~~~llv~~~~~~l~~~~~~~~~~~~~~~ 91 (401)
T 1chm_A 18 FSAQEY-----ANRQ-ARLRAHLAAENIDAAIFTSYHNINYYSDFLYCSFGRPYALVVTEDDVISISANIDGGQPWRRTV 91 (401)
T ss_dssp SCHHHH-----HHHH-HHHHHHHHHTTCSEEEECSHHHHHHHHSCCCCCTTCCCEEEECSSCEEEEEEGGGTTHHHHHCC
T ss_pred CCHHHH-----HHHH-HHHHHHHHHCCCCEEEEeCcccceeeCCCCcCCCCCeEEEEEecCCCEEEecccchhhHHHhhc
Confidence 345555 6687 89999999999998832 333 246778888877765 45566777876443333334434
Q ss_pred cCCCCCeEEec--hhhHHHHHHhhh--cCcEEEe
Q psy7580 95 NSENCPISIHP--YDAIQSFLSELE--NLIHFYS 124 (133)
Q Consensus 95 ~~~~~~v~i~~--y~~~~~~l~~~~--~~~~~~~ 124 (133)
. ... +...+ ++++.+.|..+. .+.+..+
T Consensus 92 ~-~~~-v~~~~~~~~~~~~~l~~~l~~~~~i~ve 123 (401)
T 1chm_A 92 G-TDN-IVYTDWQRDNYFAAIQQALPKARRIGIE 123 (401)
T ss_dssp S-SEE-EEECTTSTTHHHHHHHHHCSCCSEEEEC
T ss_pred c-cce-eeeccccccCHHHHHHHHhccCCeEEEe
Confidence 3 234 55545 457777887763 3344444
No 12
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans}
Probab=89.73 E-value=0.042 Score=43.75 Aligned_cols=99 Identities=6% Similarity=0.082 Sum_probs=55.2
Q ss_pred ceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccC-ceEEEE
Q psy7580 13 PVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNN-DVHLFI 81 (133)
Q Consensus 13 Pv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~-~~~lfi 81 (133)
|++.++.-+++.+. .+|+ +++++.|++++++++ |++.+|.+.+. ..+++++.+ +..+++
T Consensus 2 ~~~~~~~~~~~~e~-----~~R~-~~l~~~m~~~g~da~li~~~~ni~YltG~~~~~~~r----~~~l~v~~~g~~~l~~ 71 (378)
T 4ege_A 2 PGSMDSGRFDTAVY-----ARRL-AAAAAATEQAGLAGLVITPGYDLRYLIGSRADTFER----LTALVLPASGVPTIVL 71 (378)
T ss_dssp ------CCCCHHHH-----HHHH-HHHHHHHHHTTCSEEEECSSHHHHHHHCCCCCCSSS----CCEEEEESSSCCEEEE
T ss_pred CCCCcCCCCCHHHH-----HHHH-HHHHHHHHHcCCCEEEECCcchhHHhhCCCCCCCcc----eEEEEEEeCCcEEEEE
Confidence 77777787877777 7888 999999999999988 55556554322 244566654 578888
Q ss_pred eCCCCcHHHHHH-hcCCCCCeEEechhh---HHHHHHhh-hc--CcEEEe
Q psy7580 82 PESKMSADIQNH-FNSENCPISIHPYDA---IQSFLSEL-EN--LIHFYS 124 (133)
Q Consensus 82 d~~k~~~~~~~~-l~~~~~~v~i~~y~~---~~~~l~~~-~~--~~~~~~ 124 (133)
+..-. ....+. +. ..+ +.+.+|.+ .+..+..+ .. +.+-.+
T Consensus 72 ~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~igve 118 (378)
T 4ege_A 72 PRLEL-ASLKESAAS-DLG-VCVRDWVDGDDPYQLVAVALGGAPAATAVT 118 (378)
T ss_dssp EGGGG-GGGGTSSTT-TTT-CEEEEECTTSCHHHHHHHHTTSSSCCEEEC
T ss_pred ChhhH-HHHHhcccC-CCC-eEEEEecCCCCHHHHHHHHHhcCCCEEEEc
Confidence 54221 122221 32 235 67777632 34444443 22 455555
No 13
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Probab=84.21 E-value=0.29 Score=38.34 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=34.0
Q ss_pred CCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhh-hhhccCceEEEEeCCC
Q psy7580 32 ESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSY-LIITNNDVHLFIPESK 85 (133)
Q Consensus 32 ~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~-~il~~~~~~lfid~~k 85 (133)
.+|+ +++++.|++++++++ |+|++|.| .++ ++++.++..+|+++..
T Consensus 5 ~~R~-~~l~~~m~~~~~da~li~~~~n~~yltg~~~~~-------~~~~llv~~~~~~l~~~~~~ 61 (351)
T 1wy2_A 5 NEKV-KKIIEFMDKNSIDAVLIAKNPNVYYISGASPLA-------GGYILITGESATLYVPELEY 61 (351)
T ss_dssp CHHH-HHHHHHHHHTTCSEEEECSHHHHHHHHSCCCSS-------CCEEEEETTEEEEEEEHHHH
T ss_pred HHHH-HHHHHHHHHCCCCEEEECCCCCceEecCCCCCC-------CcEEEEEECCCcEEEECchH
Confidence 4577 899999999999887 66666655 224 4566677888888765
No 14
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae}
Probab=82.72 E-value=0.63 Score=31.32 Aligned_cols=89 Identities=9% Similarity=0.031 Sum_probs=52.9
Q ss_pred CCcchHHHHHHhhhCCCCeeee----ccc---cCCcCCCchhhhhhhhc-cCceEEEEeCCCCcHHHHHHhcCCCCCeEE
Q psy7580 32 ESKMSADIQNHFKSENCPINML----NLR---GADIPYNPVFFSYLIIT-NNDVHLFIPESKMSADIQNHFNSENCPISI 103 (133)
Q Consensus 32 ~~Ki~~~v~~~L~~~~~~~~Ll----NlR---g~Di~y~PV~~s~~il~-~~~~~lfid~~k~~~~~~~~l~~~~~~v~i 103 (133)
..|+ +++++.|+++++++++. |++ |-.-. + .+++++ .++..+|+|..-. ....+... + +++
T Consensus 11 ~~Rl-~~l~~~m~~~~~da~li~~~~n~~yltGf~~s--~---g~lvv~~~~~a~l~td~Ry~-~qA~~~~~---~-~~i 79 (135)
T 3qoc_A 11 LQRR-RALSAQLAAKRIDAMLVTHLTHIRYLSGFTGS--N---AALIINKDLSARISTDGRYI-TQIAEQVP---D-IES 79 (135)
T ss_dssp HHHH-HHHHHTHHHHTCSEEEECCHHHHHHHHCCCSS--C---CEEEEETTSCEEEEECGGGH-HHHHHHCT---T-SEE
T ss_pred HHHH-HHHHHHHHHCCCCEEEEcChhhCeeeecccCC--C---eEEEEeeCCccEEEeCcHHH-HHHHHhCC---C-cEE
Confidence 4566 89999999999998832 222 32211 1 245666 6788899875433 33344442 4 677
Q ss_pred echhhHHHHHHhh-h-cCcEEEeecccccc
Q psy7580 104 HPYDAIQSFLSEL-E-NLIHFYSTWDFPMD 131 (133)
Q Consensus 104 ~~y~~~~~~l~~~-~-~~~~~~~~~~~~~~ 131 (133)
..+.+..+.+.+. . .+.+-++.+..|..
T Consensus 80 ~~~~~~~~~l~~~~~~~~~vG~e~~~ls~~ 109 (135)
T 3qoc_A 80 LMARNCAPALLSDINGPKRVGFEADYLSVS 109 (135)
T ss_dssp EECSSHHHHHHHTCCSSEEEEEETTTSBHH
T ss_pred EEeCcHHHHHHhcCcCCCeEEECCCcccHH
Confidence 7777666666543 2 34456666655543
No 15
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=81.82 E-value=0.51 Score=31.37 Aligned_cols=88 Identities=9% Similarity=0.166 Sum_probs=47.0
Q ss_pred CcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccC-ceEEEEeCCCCcHHHHHHhcCCCCCe
Q psy7580 33 SKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNN-DVHLFIPESKMSADIQNHFNSENCPI 101 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~-~~~lfid~~k~~~~~~~~l~~~~~~v 101 (133)
+++ +++++.|++++++++ |.+.+|+..+. ...++++.+ +..+++|.--. ....+.. + .
T Consensus 3 ~Rl-~~l~~~m~~~glDa~li~~~~ni~YltGf~~~~~er----~~~l~v~~~g~~~l~~~~~y~-~~a~~~~----~-~ 71 (132)
T 3o5v_A 3 AKL-DQIRLYLDQKGAELAIFSDPVTINYLTGFFCDPHER----QLFLFVYHDLAPVLFVPALEV-ARASQAI----S-F 71 (132)
T ss_dssp HHH-HHHHHHHHHTTCCEEEECCHHHHHHHHSCCCCCTTS----CCEEEEESSSCCEEEEEGGGH-HHHHHHC----C-S
T ss_pred HHH-HHHHHHHHHCCCCEEEEcCcchhhHhhCCCCCCccc----eEEEEEeCCCCEEEEeehhhh-HHHHhcC----C-C
Confidence 466 899999999999988 33333332211 123456654 68888875332 2222222 2 3
Q ss_pred EEech---hhHHHHHHhh-h---cCcEEEeecccccc
Q psy7580 102 SIHPY---DAIQSFLSEL-E---NLIHFYSTWDFPMD 131 (133)
Q Consensus 102 ~i~~y---~~~~~~l~~~-~---~~~~~~~~~~~~~~ 131 (133)
.+..| ++..+.+... . .+.+-++.+.+|..
T Consensus 72 ~i~~~~d~~~~~~~l~~~l~~~~~~~ig~e~~~~~~~ 108 (132)
T 3o5v_A 72 PVFGYVDSENPWEKIKAVLPNTAAKTIYAEFDHLNVN 108 (132)
T ss_dssp CEEEECTTSCHHHHHHHHCSCCCCSEEEECTTTCCHH
T ss_pred cEEEEECCCCHHHHHHHHHhhccCCeEEEecCCCCHH
Confidence 44444 3344445443 2 23566665555544
No 16
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Probab=78.93 E-value=1.1 Score=35.10 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=34.9
Q ss_pred cchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCc-eEEEEeCCCCc
Q psy7580 34 KMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNND-VHLFIPESKMS 87 (133)
Q Consensus 34 Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~-~~lfid~~k~~ 87 (133)
|+ +++++.|++++++++ |+|.++ ++++.+ .++++++.++ ..+|++.....
T Consensus 2 R~-~~l~~~m~~~~~d~~li~~~~n~~yltG~~~-~~~~~~--~~~l~i~~~~~~~l~~~~~~~~ 62 (356)
T 1wn1_A 2 RL-EKFIHLLGERGFDGALISPGTNLYYLTGLRL-HEVGER--LAILAVSAEGDYRFLAPSLYEN 62 (356)
T ss_dssp HH-HHHHHHHHHTTCSEEEECSSHHHHHHHCCCC-SCCTTS--CCEEEEETTSCEEEEEEGGGTT
T ss_pred HH-HHHHHHHHHCCCcEEEECCCccceeecCCcC-CCCCCc--eEEEEEeCCCcEEEEECcccHH
Confidence 55 889999999999877 556665 345554 3456667654 89999876543
No 17
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis}
Probab=75.90 E-value=4.3 Score=31.34 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=53.2
Q ss_pred CcccCCCCCCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcCC-Cchhhhh-hhhcc-Cce
Q psy7580 1 MLNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPY-NPVFFSY-LIITN-NDV 77 (133)
Q Consensus 1 llNiRG~Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~y-~PV~~s~-~il~~-~~~ 77 (133)
|+|+||+| ++++++.+...||+|.... .+.++++. +.+.. .| .+.+-.. ..+.. +.-
T Consensus 33 LtGf~g~~--------~~llvt~~~~~l~~d~r~~-~~a~~~~~--~~~v~---------~~~~~~~~~l~~~l~~~~~~ 92 (356)
T 3q6d_A 33 MANFTGTA--------GVVLISKKRAQFITDFRYV-EQASKQAV--GYEIV---------QHAGLIIDEVAKQVKELGIQ 92 (356)
T ss_dssp HHCCCSSS--------CEEEEESSCEEEEECGGGH-HHHHHHST--TSEEE---------ECSSCHHHHHHHHHHHHTCS
T ss_pred ccCCCCCC--------eEEEEECCCeEEEEChhhH-HHHHhhCC--CCEEE---------EeCCCHHHHHHHHHHhcCCc
Confidence 46889987 6888998888999986554 56665543 23322 22 1111111 12222 335
Q ss_pred EEEEeCCCCcHHHHHHhcCCCCCeEEechhhHHHHHHhh
Q psy7580 78 HLFIPESKMSADIQNHFNSENCPISIHPYDAIQSFLSEL 116 (133)
Q Consensus 78 ~lfid~~k~~~~~~~~l~~~~~~v~i~~y~~~~~~l~~~ 116 (133)
.+.+|+..++....+.+. +..+-++.+-..+...++.+
T Consensus 93 ~igve~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~R~i 130 (356)
T 3q6d_A 93 KLGFEQDTLTYSSYSAHK-EAIDAEFIPTSGLVEKLRLI 130 (356)
T ss_dssp EEEEETTTSBHHHHHHHH-HHCCSEEEEECSHHHHHHTS
T ss_pred eEEEcCccCCHHHHHHHh-hhcccceecchhhhhhhccC
Confidence 677888878877766665 11000455555555555544
No 18
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ...
Probab=73.24 E-value=1.2 Score=36.00 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=28.0
Q ss_pred ccCCCCCCCC-------------ceeeeeEEEeC-----CceeeeecCCcch
Q psy7580 3 NLRGADIPYN-------------PVFFSYLIITN-----TDVHLFIPESKMS 36 (133)
Q Consensus 3 NiRG~Dip~n-------------Pv~~sy~~~~~-----~sv~Lfid~~Ki~ 36 (133)
|+||+|++|+ |...+++++.. +...||+++.+..
T Consensus 33 ~~r~~D~~y~frq~~n~~YltG~~~~~~~lvi~~~~~~~~~~~Lf~~~~~~~ 84 (440)
T 2v3z_A 33 VTRSADSEYPYRQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLT 84 (440)
T ss_dssp CEEETTEECCCCCCHHHHHHHCCCCSSCEEEEEECSSSCEEEEEEECCCCHH
T ss_pred cccCCCCCCcccCCCCEEEecCCCCCCEEEEEEecCCCCceEEEEecCCCcc
Confidence 8999999998 88888888863 4689999887653
No 19
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus}
Probab=69.17 E-value=1.6 Score=34.10 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=41.6
Q ss_pred CCcchHHHHHHhhhCCCCee----------eeccccCCcCCCchhhhhhhhccCceEEEEeCCCCcHHHHHHhcCCCCCe
Q psy7580 32 ESKMSADIQNHFKSENCPIN----------MLNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPI 101 (133)
Q Consensus 32 ~~Ki~~~v~~~L~~~~~~~~----------LlNlRg~Di~y~PV~~s~~il~~~~~~lfid~~k~~~~~~~~l~~~~~~v 101 (133)
++|+ +++++.|++++++++ |++.++.+....|++ .++..++..+++.+... ....+.+. ... +
T Consensus 16 ~~Rl-~rlr~~m~~~glDalli~~~~ni~YLTG~~~~~~~~~~~~---lvv~~~g~~~~~~~~~~-~~~~~~~~-~~~-~ 88 (377)
T 4fkc_A 16 KRRI-HKFQAHFGKKGFEGALVAPGSNFYYLTGFNPLGTLERLFV---LILPSEGLLTAIAPRLY-EKELEEFN-GEV-V 88 (377)
T ss_dssp HHHH-HHHHHHHHHTTCCEEEECSSHHHHHHHSCCCCCCSSSCCE---EEEESSSCCEEEEEGGG-HHHHTTCS-SEE-E
T ss_pred HHHH-HHHHHHHHHCCCCEEEECCChhheeecCCCCCCCCcceEE---EEEcCCCcEEEEeccch-HHHHHhcC-CCE-E
Confidence 4577 899999999999988 444555444444432 24444444444443322 22233332 122 2
Q ss_pred EEe----chhhHHHHHHhhh
Q psy7580 102 SIH----PYDAIQSFLSELE 117 (133)
Q Consensus 102 ~i~----~y~~~~~~l~~~~ 117 (133)
... +++.+...|+++.
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~ 108 (377)
T 4fkc_A 89 LWSDSENPYKIFATKIKETF 108 (377)
T ss_dssp EECTTSCHHHHHHHHHHHHS
T ss_pred EeccccCHHHHHHHHHHHhh
Confidence 222 3455666666653
No 20
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Probab=69.07 E-value=13 Score=24.05 Aligned_cols=92 Identities=8% Similarity=0.017 Sum_probs=53.8
Q ss_pred cccCCCCCCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcCCCchhhhh-hhhccC-ceEE
Q psy7580 2 LNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSY-LIITNN-DVHL 79 (133)
Q Consensus 2 lNiRG~Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~y~PV~~s~-~il~~~-~~~l 79 (133)
.+.+|++ ++++++.+...||+|.-.. .+.+++. .+.+.. .|...+-.. ..+... --.+
T Consensus 35 tGf~~~~--------~~llv~~~~~~l~~d~r~~-~~a~~~~--~~~~v~---------~~~~~~~~l~~~l~~~~~~~i 94 (131)
T 3il0_A 35 TDFWGTN--------ATVFITKNRRLFLTDSRYT-LIAKQSV--HGFDII---------ESKDPLKDIVKFVEVDKLETI 94 (131)
T ss_dssp HSCCCSS--------EEEEEESSCEEEEECTTSH-HHHHHHC--CSSEEE---------ECSCHHHHHHHHHHHTTCCEE
T ss_pred eCcccCC--------eEEEEECCCCEEEECchhH-HHHHHhC--CCcEEE---------EeCCHHHHHHHHHHhcCCCEE
Confidence 3556664 5788888899999987666 6666654 233333 332222222 122222 2467
Q ss_pred EEeCCCCcHHHHHHhc-CCCCCeEEechhhHHHHHHh
Q psy7580 80 FIPESKMSADIQNHFN-SENCPISIHPYDAIQSFLSE 115 (133)
Q Consensus 80 fid~~k~~~~~~~~l~-~~~~~v~i~~y~~~~~~l~~ 115 (133)
-+|+. ++....+.|. .-.+ +++.+-+.+...++.
T Consensus 95 g~e~~-~~~~~~~~L~~~~~~-~~~v~~~~~v~~lR~ 129 (131)
T 3il0_A 95 GFDNQ-VSFAYYQALQAIFEG-YTLSPQTNFMEELRM 129 (131)
T ss_dssp EEETT-SCHHHHHHHHHHTTT-SEEEEESSHHHHHHC
T ss_pred EEcCC-CCHHHHHHHHhhcCC-CEEEECchHHHHhcc
Confidence 88888 8877666664 0124 677777777666654
No 21
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114}
Probab=67.76 E-value=1.3 Score=36.42 Aligned_cols=50 Identities=6% Similarity=0.046 Sum_probs=36.8
Q ss_pred CcchHHHHHHhhhCCCCee----------eeccccCC--cCCCchhhhhhhhccCceEEEEeCCC
Q psy7580 33 SKMSADIQNHFKSENCPIN----------MLNLRGAD--IPYNPVFFSYLIITNNDVHLFIPESK 85 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~----------LlNlRg~D--i~y~PV~~s~~il~~~~~~lfid~~k 85 (133)
+|+ +++++.|++++++++ |+|.+|.+ .+++|. .+++++.++..+++|...
T Consensus 81 ~Rl-~rlr~~m~~~glDalli~~~~ni~YlTGf~g~~~~~~~~~~--~~llV~~dg~~~l~d~r~ 142 (470)
T 4b28_A 81 FRH-RRLTDHVVARGYAGLLMFDPLNIRYATDSTNMQLWNTHNPF--RATLLCADGYMVMWDYKN 142 (470)
T ss_dssp HHH-HHHHHHHHHTTCSEEEECSHHHHHHHHCCCSSHHHHHHSCC--CEEEEETTSCEEEECCTT
T ss_pred HHH-HHHHHHHHHcCCCEEEEcCCCcceeecCCCCCcccccCCCC--EEEEEECCCCEEEEecch
Confidence 366 899999999999988 67777766 556664 456777766667777654
No 22
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=65.86 E-value=8.8 Score=22.06 Aligned_cols=27 Identities=7% Similarity=0.211 Sum_probs=22.3
Q ss_pred eEEEeCCceeeeecCCcchHHHHHHhh
Q psy7580 18 YLIITNTDVHLFIPESKMSADIQNHFK 44 (133)
Q Consensus 18 y~~~~~~sv~Lfid~~Ki~~~v~~~L~ 44 (133)
-+.|.|+.|.+.+|..|+.+++.+++.
T Consensus 15 ~AkYkGd~Vsf~Ld~~~iP~~~IeKIE 41 (52)
T 3kz5_E 15 TVLYKGDKMVLNLDRSRVPTECIEKIE 41 (52)
T ss_dssp EEEEETTEEEEEEETTTSCHHHHHHHH
T ss_pred eeEecCCeEEEEeccccCCHHHHHHHH
Confidence 467889999999999998777776664
No 23
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=65.69 E-value=4.5 Score=26.79 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=27.8
Q ss_pred cchHHHHHHhhhCCCCeee----eccc---cCCcCCCchhhhhhhhccC-ceEEEEeC
Q psy7580 34 KMSADIQNHFKSENCPINM----LNLR---GADIPYNPVFFSYLIITNN-DVHLFIPE 83 (133)
Q Consensus 34 Ki~~~v~~~L~~~~~~~~L----lNlR---g~Di~y~PV~~s~~il~~~-~~~lfid~ 83 (133)
++ +++++.|+++++++++ .|++ |-...-.. ....++++.+ +..+++|.
T Consensus 5 Rl-~~l~~~m~~~glDa~li~~~~ni~YlTGf~~~~~e-r~~~llv~~~g~~~l~~~~ 60 (140)
T 3i7m_A 5 KL-EQIQQWTAQHHASMTYLSNPKTIEYLTGFGSDPIE-RVLALVVFPDQDPFIFAPA 60 (140)
T ss_dssp HH-HHHHHHHHHTTCSEEEECCHHHHHHHHCCCCCCCS-SCCEEEECSSSCCEEEEEG
T ss_pred HH-HHHHHHHHHcCCCEEEECCCCcceeecCCCCCCcc-ceEEEEEeCCCCEEEEEec
Confidence 66 8999999999999882 2222 32211000 0113455554 68888875
No 24
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=58.77 E-value=5.6 Score=26.02 Aligned_cols=90 Identities=14% Similarity=0.245 Sum_probs=46.0
Q ss_pred CcchHHHHHHhhhCCCCeee----eccc---cCCcCCCch-hhhhhhhccC-ceEEEEeCCCCcHHHHHHhcCCCCCeEE
Q psy7580 33 SKMSADIQNHFKSENCPINM----LNLR---GADIPYNPV-FFSYLIITNN-DVHLFIPESKMSADIQNHFNSENCPISI 103 (133)
Q Consensus 33 ~Ki~~~v~~~L~~~~~~~~L----lNlR---g~Di~y~PV-~~s~~il~~~-~~~lfid~~k~~~~~~~~l~~~~~~v~i 103 (133)
+++ +++++.|+++++++++ .|++ |-.. +|- -...++++.+ +..+++|..-. ....+.. + ..+
T Consensus 3 ~Rl-~~l~~~m~~~glDa~li~~~~ni~YlTGf~~--~~~er~~~l~v~~~g~~~l~~~~~y~-~~a~~~~----~-~~v 73 (132)
T 3ooo_A 3 SKL-NRIRHHLHSVQAELAVFSDPVTVNYLTGFFC--DPHERQMFLFVYEDRDPILFVPALEV-SRAKQSV----P-FPV 73 (132)
T ss_dssp HHH-HHHHHHHHHTTCSEEEECCHHHHHHHHSCCC--CCTTSCCEEEEESSSCCEEEEEGGGH-HHHHHHC----S-SCE
T ss_pred hHH-HHHHHHHHHCCCCEEEEcCcchHHHHhCCCC--CCCcceEEEEEeCCCCEEEEEeccch-HHHHhcC----C-CcE
Confidence 466 8999999999999882 2222 3321 110 0113455554 58888875332 2222221 2 344
Q ss_pred ech---hhHHHHHHhh-hc---CcEEEeecccccc
Q psy7580 104 HPY---DAIQSFLSEL-EN---LIHFYSTWDFPMD 131 (133)
Q Consensus 104 ~~y---~~~~~~l~~~-~~---~~~~~~~~~~~~~ 131 (133)
..| ++..+.+.+. .. +.+-++....|..
T Consensus 74 ~~~~d~~~~~~~l~~~l~~~~~~~ig~e~~~~~~~ 108 (132)
T 3ooo_A 74 FGYIDSENPWQKIASNLPSFSVSKVLAEFDNLNVT 108 (132)
T ss_dssp EEECTTSCHHHHHHHHCSCCCCSEEEECTTTCCHH
T ss_pred EEEeCCCCHHHHHHHHHhhccCCeEEEecCCcCHH
Confidence 444 3445555544 22 3455665555543
No 25
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Probab=52.22 E-value=30 Score=26.90 Aligned_cols=102 Identities=4% Similarity=-0.084 Sum_probs=55.3
Q ss_pred CcccCCCCCCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcCCCchhhhhhhhccCceEEE
Q psy7580 1 MLNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSYLIITNNDVHLF 80 (133)
Q Consensus 1 llNiRG~Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~y~PV~~s~~il~~~~~~lf 80 (133)
|.|.||++. ..| ++++++.+...||+|..+..+..++ +. +....+ . +......+-..+-+..+.-.+.
T Consensus 54 ltgf~~s~~-~~p---~~llV~~~~~~l~~~~~~~~~a~~~-~~--~~~v~~---~--~~~~~~~~~~l~~~l~~~~~ig 121 (402)
T 1kp0_A 54 YSGWLYCYF-GRK---YAZVIBZVKAVTISKGIDGGMPWRR-SF--GBNIVY---T--DWKRDNFYSAVKKLVKGAKZIG 121 (402)
T ss_dssp HHSCCCCCT-TCC---CEEEECSSCEEEEEEGGGTTHHHHH-CS--SEEEEE---C--SSSTTHHHHHHHHHHTTCSEEE
T ss_pred ecCCCCCCC-Cce---EEEEEeCCCCEEEeccchhhhhHHh-cc--CcceEe---c--cccccCHHHHHHHHhccCCEEE
Confidence 357888765 344 6778887789999998776333332 21 111111 1 1111111222111111345788
Q ss_pred EeCCCCcHHHHHHhcCC--CCCeEEechhhHHHHHHhh
Q psy7580 81 IPESKMSADIQNHFNSE--NCPISIHPYDAIQSFLSEL 116 (133)
Q Consensus 81 id~~k~~~~~~~~l~~~--~~~v~i~~y~~~~~~l~~~ 116 (133)
+|+..++....+.+. + .+ +++.+-..+...++.+
T Consensus 122 vd~~~~~~~~~~~l~-~~l~~-~~~v~~~~~i~~lR~i 157 (402)
T 1kp0_A 122 IEHDHVTLBHRRZLZ-KALPG-TEFVDVGZPVMWZRVI 157 (402)
T ss_dssp ECTTTCBHHHHHHHH-HHSTT-CEEEECHHHHHHHHTS
T ss_pred EecCCCCHHHHHHHH-HhCCC-CEEEECHHHHHHHHHc
Confidence 888888877666664 1 24 6777766666666544
No 26
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Probab=47.76 E-value=75 Score=24.06 Aligned_cols=96 Identities=7% Similarity=0.072 Sum_probs=52.2
Q ss_pred cccCCCCCCCCceeeeeEEEeCCceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcCCCchhhhhhhhcc-CceEEE
Q psy7580 2 LNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSYLIITN-NDVHLF 80 (133)
Q Consensus 2 lNiRG~Dip~nPv~~sy~~~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~y~PV~~s~~il~~-~~~~lf 80 (133)
+|.+|++ ++++++.+...||+|.... .+.+++ .+++..- . ..+ .+.-.-...+.. +.-.+.
T Consensus 36 tGf~~~~--------~~llI~~~~~~L~~d~r~~-~~a~~~---~~~~v~~--~-~~~---~~~~~l~~~L~~~~~~~vg 97 (359)
T 2zsg_A 36 SGFTGSF--------SIILISENTRLLITDSRYT-VQAKQE---TDFEVRE--V-KGG---DFIDVLKKTVNDLKIKTIA 97 (359)
T ss_dssp HCCCSSC--------EEEEEETTEEEEEECTTTH-HHHHHH---CCSEEEE--C-------CCHHHHHHHHHHTTCCEEE
T ss_pred eccCCCC--------EEEEEECCCCEEEECcccH-HHHHhC---CCCEEEE--e-cCc---chHHHHHHHHHhcCCCEEE
Confidence 4667754 7888898889999987766 455444 2333331 0 011 011111112222 234678
Q ss_pred EeCCCCcHHHHHHhcCC--CCCeEEechhhHHHHHHhhh
Q psy7580 81 IPESKMSADIQNHFNSE--NCPISIHPYDAIQSFLSELE 117 (133)
Q Consensus 81 id~~k~~~~~~~~l~~~--~~~v~i~~y~~~~~~l~~~~ 117 (133)
+|+..++....+.+. + .+ +++.+-..+...++.+.
T Consensus 98 vd~~~~~~~~~~~l~-~~l~~-~~~v~~~~~i~~lr~iK 134 (359)
T 2zsg_A 98 LEEERVSLSLFRRIS-SAFGD-RKFIGIDDEVKQMRMVK 134 (359)
T ss_dssp ECGGGSBHHHHHHHH-HHTTT-CEEEECHHHHHHHHHBC
T ss_pred EeCCcCCHHHHHHHH-hhCCC-cEEEEChhhhhhhhcCC
Confidence 887777766555554 1 23 56666666666666553
No 27
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1
Probab=39.16 E-value=67 Score=25.00 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=53.1
Q ss_pred CCCCCCceeeeeEE-EeCCceeeeecCCcchHHHHHHhhhCCCCeeeeccccCCcCCCchhhhhhhhccCceEEEEeCCC
Q psy7580 7 ADIPYNPVFFSYLI-ITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSYLIITNNDVHLFIPESK 85 (133)
Q Consensus 7 ~Dip~nPv~~sy~~-~~~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~LlNlRg~Di~y~PV~~s~~il~~~~~~lfid~~k 85 (133)
+++.++|+...+++ ++.+...+|++.-......++.+ +.+.. .-.|.++...+-..+-+..+.-.+.+++..
T Consensus 54 tg~~~~~~~~~~~llv~~~~~~l~~~~~~~~~~~~~~~---~~~~v----~~~~~~~~~~~~~l~~~l~~~~~i~ve~~~ 126 (401)
T 1chm_A 54 SDFLYCSFGRPYALVVTEDDVISISANIDGGQPWRRTV---GTDNI----VYTDWQRDNYFAAIQQALPKARRIGIEHDH 126 (401)
T ss_dssp HSCCCCCTTCCCEEEECSSCEEEEEEGGGTTHHHHHCC---SSEEE----EECTTSTTHHHHHHHHHCSCCSEEEECTTT
T ss_pred CCCCcCCCCCeEEEEEecCCCEEEecccchhhHHHhhc---cccee----eeccccccCHHHHHHHHhccCCeEEEecCC
Confidence 36678888888776 46666778876444322223222 11111 001222322222222221233468888888
Q ss_pred CcHHHHHHhcCC--CCCeEEechhhHHHHHHhhh
Q psy7580 86 MSADIQNHFNSE--NCPISIHPYDAIQSFLSELE 117 (133)
Q Consensus 86 ~~~~~~~~l~~~--~~~v~i~~y~~~~~~l~~~~ 117 (133)
++....+.+. + .+ .++.+-......++.++
T Consensus 127 ~~~~~~~~l~-~~~~~-~~~~~~~~~i~~~R~iK 158 (401)
T 1chm_A 127 LNLQNRDKLA-ARYPD-AELVDVAAACMRMRMIK 158 (401)
T ss_dssp CBHHHHHHHH-HHCTT-CEEEECHHHHHHHHTSC
T ss_pred CCHHHHHHHH-hhCCC-CEEEEhHHHHHHHHhcC
Confidence 8877666664 1 24 67777666666666543
No 28
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A*
Probab=38.45 E-value=11 Score=30.10 Aligned_cols=73 Identities=8% Similarity=0.130 Sum_probs=40.1
Q ss_pred CCcchHHHHHHhh--hCCCCeeeeccc-cC-CcCC----------Cc--hhhhhhhhccCceEEEEeCCCCc--HHHHH-
Q psy7580 32 ESKMSADIQNHFK--SENCPINMLNLR-GA-DIPY----------NP--VFFSYLIITNNDVHLFIPESKMS--ADIQN- 92 (133)
Q Consensus 32 ~~Ki~~~v~~~L~--~~~~~~~LlNlR-g~-Di~y----------~P--V~~s~~il~~~~~~lfid~~k~~--~~~~~- 92 (133)
.+|+ +++++.|+ ++++++++..-. .. +..| +- ...++++++.++..+|+|..+.. ..+.+
T Consensus 14 ~~Rl-~~Lr~~m~~~~~giDa~li~~~~~~~~~~y~~~~~~~~yLtGf~~~~~~lvVt~d~~~L~~d~~~~~y~~~a~~~ 92 (467)
T 3biq_A 14 KKRI-ELLYSKYNEFEGSPNSLLFVLGSSNAENPYQKTTILHNWLLSYEFPATLIALVPGKVIIITSSAKAKHLQKAIDL 92 (467)
T ss_dssp HHHH-HHHHHHGGGSTTCCSEEEEEECSCCTTSTTCHHHHHHHHHHSSCCSSEEEEEETTEEEEEEEHHHHHHHHHHHGG
T ss_pred HHHH-HHHHHHHHhhhcCCCEEEEEcCCCCCCCCCccchhhhhHhhCCCCCCEEEEEECCeEEEEECCcchHHHHHHhhh
Confidence 5577 89999999 899988732211 11 1221 00 01235666777788999875432 23333
Q ss_pred -Hhc-CCCCCeEEech
Q psy7580 93 -HFN-SENCPISIHPY 106 (133)
Q Consensus 93 -~l~-~~~~~v~i~~y 106 (133)
.+. ...+ +++..|
T Consensus 93 ~e~~~~~~~-v~v~~~ 107 (467)
T 3biq_A 93 FKDPESKIT-LELWQR 107 (467)
T ss_dssp GCC--CCCE-EEEEEE
T ss_pred cccccCCCC-eEEEEe
Confidence 222 0115 777777
No 29
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=35.25 E-value=28 Score=22.98 Aligned_cols=32 Identities=6% Similarity=0.259 Sum_probs=25.1
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eecccc
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRG 57 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg 57 (133)
.+.-+|.++|+ .++++.|.+.++..+ +.+.+|
T Consensus 3 ~I~AIIrp~kl-~~Vk~AL~~~G~~g~Tv~~V~G 35 (119)
T 3ncq_A 3 KIEAIVRAEKF-PEVKAALEERGFYGMTVTDVKG 35 (119)
T ss_dssp EEEEEECTTTH-HHHHHHHHHTTCCCEEEEEEEE
T ss_pred EEEEEECHHHH-HHHHHHHHHCCCCeEEEEeeEe
Confidence 35678899999 999999999888777 445543
No 30
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=33.63 E-value=27 Score=23.04 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=25.7
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
.+.-+|.++|+ .++++.|.+.++..+ +.+.+|.
T Consensus 3 ~I~AIIrp~kl-~~Vk~AL~~~G~~g~Tv~~V~G~ 36 (118)
T 3t9z_A 3 MVVAVIRPEKL-ECVKKALEERGFVGMTVTEVKGR 36 (118)
T ss_dssp EEEEEECGGGH-HHHHHHHHHTTCCCEEEEEEEEE
T ss_pred EEEEEECHHHH-HHHHHHHHHCCCceEEEEeeEee
Confidence 35678899999 999999999888777 5555543
No 31
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=31.93 E-value=17 Score=25.10 Aligned_cols=35 Identities=9% Similarity=0.266 Sum_probs=30.3
Q ss_pred EeCCCCcHHHHHHhcCCCCCeEEechhhHHHHHHhhhc
Q psy7580 81 IPESKMSADIQNHFNSENCPISIHPYDAIQSFLSELEN 118 (133)
Q Consensus 81 id~~k~~~~~~~~l~~~~~~v~i~~y~~~~~~l~~~~~ 118 (133)
+|..++.....+.|+ +| |+|.+-+++.+.|.++++
T Consensus 103 Idv~~Les~~~~~L~--~G-Irv~~~~ey~~vl~~~~~ 137 (140)
T 2bw2_A 103 IDLERLESHMQKNLL--KG-IPFRTKAEFEDVIEHMKT 137 (140)
T ss_dssp CCTTTSCHHHHHHHH--HC-CSCCCHHHHHHHHHHHHH
T ss_pred cCHHHhhhhhHHHHh--cC-CeeCCHHHHHHHHHHHHh
Confidence 488889899999997 78 999999999999888764
No 32
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=30.91 E-value=31 Score=22.64 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=25.7
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
.+.-+|.++|+ .++++.|.+.++..+ +.+.+|.
T Consensus 3 ~I~AIIrp~kl-~~vk~AL~~~G~~g~Tv~~V~G~ 36 (116)
T 4aff_A 3 KIEAIIRPFKL-DEVKIALVNAGIVGMTVSEVRGF 36 (116)
T ss_dssp EEEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEEC
T ss_pred EEEEEECHHHH-HHHHHHHHHCCCCeEEEEeeEeE
Confidence 35668899999 999999999888776 5565544
No 33
>1ydl_A TFIIH, general transcription factor IIH, polypeptide 5; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Homo sapiens} SCOP: d.295.1.1 PDB: 2jnj_A
Probab=30.88 E-value=38 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEeCCceeeeecCCcchHHHHHHhhh
Q psy7580 20 IITNTDVHLFIPESKMSADIQNHFKS 45 (133)
Q Consensus 20 ~~~~~sv~Lfid~~Ki~~~v~~~L~~ 45 (133)
+--.++.+|||+++++ +.+++++.+
T Consensus 43 IedLDdtHLfV~~~~v-~~lk~~l~~ 67 (79)
T 1ydl_A 43 IQDIDDTHVFVIAELV-NVLQERVGE 67 (79)
T ss_dssp EEECSSSEEEECTTHH-HHHHHHHHH
T ss_pred EEEcCCceEEEcHHHH-HHHHHHHHH
Confidence 3346788999999998 899998875
No 34
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=28.95 E-value=35 Score=21.88 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=25.7
Q ss_pred eeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 26 VHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 26 v~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
+..+|.++|+ .++.+.|.+.++..+ +.+.+|.
T Consensus 4 I~aII~~~~~-~~v~~aL~~~G~~g~Tv~~v~G~ 36 (112)
T 2eg2_A 4 IEAIIKPFKL-DEVKDALVEIGIGGMTVTEVKGF 36 (112)
T ss_dssp EEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEEC
T ss_pred EEEEECHHHH-HHHHHHHHHCCCCeEEEEEeEee
Confidence 5668889999 999999999888766 6666654
No 35
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=28.45 E-value=42 Score=21.86 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=26.2
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
.+..+|.++|+ .++.+.|.+.++..+ +.+.+|.
T Consensus 5 ~I~aII~~~~~-~~v~~aL~~~G~~g~Tv~~v~G~ 38 (119)
T 2j9c_A 5 KVEAIIRPEKL-EIVKKALSDAGYVGMTVSEVKGR 38 (119)
T ss_dssp EEEEEECGGGH-HHHHHHHHHTTCCCEEEEEEEEE
T ss_pred EEEEEECHHHH-HHHHHHHHHCCCCeEEEEeeEee
Confidence 45678889999 999999999888776 6666644
No 36
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=28.28 E-value=35 Score=22.06 Aligned_cols=33 Identities=6% Similarity=0.105 Sum_probs=25.9
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
.+..+|.++|+ .++.+.|.+.++..+ +.+.+|.
T Consensus 3 ~I~aII~~~~~-~~V~~aL~~~G~~g~Tv~~v~G~ 36 (116)
T 1vfj_A 3 LIVAIVRPEKL-NEVLKALFQAEVRGLTLSRVQGH 36 (116)
T ss_dssp EEEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEEE
T ss_pred EEEEEECHHHH-HHHHHHHHhCCCCeEEEEeeEeE
Confidence 35678899998 999999999888766 5566654
No 37
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=28.15 E-value=29 Score=22.47 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=25.5
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
.+.-+|.++|+ .++++.|.+.++..+ ..+.+|.
T Consensus 3 ~I~aIIr~~kl-~~vk~AL~~~G~~g~Tv~~v~G~ 36 (112)
T 3mhy_A 3 LVMAIIKPFKL-DEVREALTSLGIQGLTVSEVKGF 36 (112)
T ss_dssp EEEEEECGGGH-HHHHHHHHHHTCCCEEEEEEEEE
T ss_pred EEEEEECHHHH-HHHHHHHHHCCCCeEEEEEEEeE
Confidence 35678999999 999999998888776 5555543
No 38
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=28.11 E-value=44 Score=19.75 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=23.4
Q ss_pred CCceeeeecCCcchHHHHHHhhhCCCCee
Q psy7580 23 NTDVHLFIPESKMSADIQNHFKSENCPIN 51 (133)
Q Consensus 23 ~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~ 51 (133)
|..+.+.|.++++ +++.+.|++.+++..
T Consensus 46 ~~~vdI~V~p~~~-~~f~~~L~~~~I~y~ 73 (78)
T 2gjf_A 46 GQPVVILIPSDMV-EWFLEMLKAKGIPFT 73 (78)
T ss_dssp TCCEEEEECTTSH-HHHHHHHHHHTCCEE
T ss_pred CCeEEEEECHHHH-HHHHHHHHHCCCcEE
Confidence 6788999999998 899999987776644
No 39
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=27.53 E-value=37 Score=21.76 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=25.0
Q ss_pred eeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 26 VHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 26 v~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
+.-+|.++|+ .++++.|.+.++..+ +.+.+|.
T Consensus 4 I~aII~~~~~-~~v~~aL~~~G~~g~Tv~~v~G~ 36 (112)
T 1hwu_A 4 VTAIIKPFKL-DEVRESLAEVGVTGLTVTEVKGF 36 (112)
T ss_dssp EEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEEE
T ss_pred EEEEECHHHH-HHHHHHHHHCCCCeEEEEeeEeE
Confidence 4568889999 999999999888766 5565544
No 40
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=27.36 E-value=53 Score=19.42 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCceeeeecCCcchHHHHHHhhhCCCCee
Q psy7580 23 NTDVHLFIPESKMSADIQNHFKSENCPIN 51 (133)
Q Consensus 23 ~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~ 51 (133)
|..+++.|.++++ +++.+.|+..+++..
T Consensus 38 ~~~~di~V~p~~~-~~f~~~L~~~~i~~~ 65 (79)
T 1vjq_A 38 GQPVVILIPSDMV-EWFLEMLKAKGIPFT 65 (79)
T ss_dssp TCCEEEEECGGGH-HHHHHHHHHTTCCEE
T ss_pred CCcEEEEECHHHH-HHHHHHHHHCCCcEE
Confidence 6788999999998 899999998887655
No 41
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=27.02 E-value=50 Score=21.73 Aligned_cols=35 Identities=11% Similarity=-0.009 Sum_probs=27.8
Q ss_pred CCceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 23 NTDVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 23 ~~sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
...+..++.+.|+ +++.+.|.+.|+..+ ..+.+|.
T Consensus 25 mK~I~aIIr~~k~-e~V~~aL~~~Gi~G~TV~~V~G~ 60 (119)
T 2cz4_A 25 LKLVTIVAESLLE-KRLVEEVKRLGAKGYTITPARGE 60 (119)
T ss_dssp EEEEEEEEEGGGH-HHHHHHHHHTTCCCCEEEEEBCT
T ss_pred cEEEEEEECHHHH-HHHHHHHHhCCCCcEEEcCCEEe
Confidence 4457888989999 999999999888766 6667655
No 42
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=26.08 E-value=47 Score=21.45 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=26.6
Q ss_pred CceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 24 TDVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 24 ~sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
..+..+|.++|+ .++++.|.+.++..+ +.+.+|.
T Consensus 6 k~I~aIIr~~~~-~~v~~AL~~~G~~g~Tv~~v~G~ 40 (116)
T 2ns1_B 6 KLVTVIIKPFKL-EDVREALSSIGIQGLTVTEVKGF 40 (116)
T ss_dssp EEEEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEEC
T ss_pred EEEEEEECHHHH-HHHHHHHHHCCCCeEEEEeeEeE
Confidence 345678889999 999999999888766 5566644
No 43
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=25.94 E-value=45 Score=21.36 Aligned_cols=33 Identities=6% Similarity=0.145 Sum_probs=25.8
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
.+..+|.++|+ .++.+.|.+.++..+ +.+.+|.
T Consensus 5 ~I~aIIr~~~~-~~v~~aL~~~G~~g~Tv~~v~G~ 38 (114)
T 3bzq_A 5 LITAIVKPFTL-DDVKTSLEDAGVLGMTVSEIQGY 38 (114)
T ss_dssp EEEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEEE
T ss_pred EEEEEECHHHH-HHHHHHHHHCCCCeEEEEeeEEe
Confidence 45678889998 999999999888766 5566644
No 44
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=25.02 E-value=48 Score=21.30 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=25.8
Q ss_pred ceeeeecCCcchHHHHHHhhhCCCCee-eeccccC
Q psy7580 25 DVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGA 58 (133)
Q Consensus 25 sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~ 58 (133)
.+..+|.++|+ .++.+.|.+.++... +.+.+|.
T Consensus 5 ~I~aII~~~~~-~~v~~aL~~~G~~g~Tv~~v~G~ 38 (114)
T 2gw8_A 5 KIEAIVKPFKL-DDVREALTEIGITGMTVSEVKGF 38 (114)
T ss_dssp EEEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEEE
T ss_pred EEEEEECHHHH-HHHHHHHHHCCCCeEEEEeeEee
Confidence 45678889998 999999999888766 5566644
No 45
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=24.50 E-value=34 Score=20.80 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCceeeeecCCcchHHHHHHhhh
Q psy7580 23 NTDVHLFIPESKMSADIQNHFKS 45 (133)
Q Consensus 23 ~~sv~Lfid~~Ki~~~v~~~L~~ 45 (133)
.++.+|||+++++ ..+++++.+
T Consensus 34 LDdtHl~V~~~~v-~~lk~~l~~ 55 (71)
T 3dgp_B 34 LDDTHLLVNPSKV-EFVKHELNR 55 (71)
T ss_dssp EETTEEEECGGGH-HHHHHHHHH
T ss_pred cCCceEEEcHHHH-HHHHHHHHH
Confidence 5678999999988 888887764
No 46
>3l7p_A Putative nitrogen regulatory protein PII; SMU_1 transcription, transcription regulation; 2.00A {Streptococcus mutans} SCOP: d.58.5.1
Probab=24.16 E-value=32 Score=22.50 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=26.3
Q ss_pred CceeeeecCCcchHHHHHHhhhCCC-Cee-eeccccC
Q psy7580 24 TDVHLFIPESKMSADIQNHFKSENC-PIN-MLNLRGA 58 (133)
Q Consensus 24 ~sv~Lfid~~Ki~~~v~~~L~~~~~-~~~-LlNlRg~ 58 (133)
..+.-+|.++|+ .++++.|.+.++ ..+ ..+.+|.
T Consensus 4 KkI~AIIrp~kl-~~Vk~AL~~~G~d~g~Tv~~V~G~ 39 (115)
T 3l7p_A 4 KKIEAIIRSDKL-EDLKAALVQSGFIKGMTISQVLGF 39 (115)
T ss_dssp EEEEEEEEGGGH-HHHHHHHHHHTCGGGEEEEEEEEE
T ss_pred EEEEEEECHHHH-HHHHHHHHHCCCCccEEEEEEEeE
Confidence 356778999999 999999999888 666 5555543
No 47
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=23.27 E-value=56 Score=22.00 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=27.6
Q ss_pred CceeeeecCCcchHHHHHHhhhCCCCee-eeccccCC
Q psy7580 24 TDVHLFIPESKMSADIQNHFKSENCPIN-MLNLRGAD 59 (133)
Q Consensus 24 ~sv~Lfid~~Ki~~~v~~~L~~~~~~~~-LlNlRg~D 59 (133)
..+..+|.++|+ .++++.|.+.++... +.+.+|.-
T Consensus 14 K~I~AIIr~~k~-~~V~~AL~~~G~~G~Tv~~v~G~G 49 (135)
T 2o66_A 14 YKVEAIVRPWRI-QQVSSALLKIGIRGVTVSDVRGFG 49 (135)
T ss_dssp EEEEEEECGGGH-HHHHHHHHHTTCCCCEEEEEEECC
T ss_pred EEEEEEECHHHH-HHHHHHHHHCCCceEEEEeeEeEe
Confidence 456778889998 999999999888776 66776553
No 48
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=22.21 E-value=53 Score=21.84 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=24.3
Q ss_pred eeeeecCCcchHHHHHHhhhC-CCCee-eeccc
Q psy7580 26 VHLFIPESKMSADIQNHFKSE-NCPIN-MLNLR 56 (133)
Q Consensus 26 v~Lfid~~Ki~~~v~~~L~~~-~~~~~-LlNlR 56 (133)
+++++.+.|+ .+|++.|.+. ++..+ +.+.+
T Consensus 26 I~aIIrP~kl-d~V~daL~~~~gi~G~TvseV~ 57 (120)
T 3ce8_A 26 LVLIAQNDIK-DDIVDTLIELEFLSGFSLGNIC 57 (120)
T ss_dssp EEEEEEGGGH-HHHHHHHTTCTTCCCCEEEEEE
T ss_pred EEEEeCHHHH-HHHHHHHHhCCCCCcEEEEeeE
Confidence 5888999999 9999999886 87766 55554
No 49
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=20.01 E-value=18 Score=16.84 Aligned_cols=9 Identities=11% Similarity=0.505 Sum_probs=5.9
Q ss_pred CcccCCCCC.....
Q psy7580 1 MLNLRGADI..... 9 (133)
Q Consensus 1 llNiRG~Di..... 9 (133)
||++|+|.+
T Consensus 13 Ll~~rnSP~..... 21 (21)
T 3hxi_C 13 LMECRNSPVxxxxx 26 (26)
T ss_pred HHHhccCCC.....
Confidence 467787753
Done!