RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7580
         (133 letters)



>gnl|CDD|211384 cd11298, O-FucT-2, GDP-fucose protein O-fucosyltransferase 2.
           O-FucT-2 adds O-fucose to thrombospondin type 1 repeats
           (TSRs), and appears conserved in bilateria. The
           O-fucosylation of TSRs appears to play a role in
           regulating secretion of metalloproteases of the ADAMTS
           superfamily. O-fucosyltransferase-like proteins are
           GDP-fucose dependent enzymes with similarities to the
           family 1 glycosyltransferases (GT1). They are soluble ER
           proteins that may be proteolytically cleaved from a
           membrane-associated preprotein, and are involved in the
           O-fucosylation of protein substrates, the core
           fucosylation of growth factor receptors, and other
           processes.
          Length = 374

 Score = 26.5 bits (59), Expect = 4.4
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 15/81 (18%)

Query: 46  ENCPINMLNLRGADIPYNPVFFSYLIITNND---VHLFIPESKMSADIQNHFNSENCPIS 102
            +C I  +  +  D  Y   F+ Y  +T      +      S ++  +  +    +  I 
Sbjct: 118 RSCIIEPVYSKDCDGKYRGWFWGYCEVTARKFSCLSFQGSASYLAPSLLENKFLRSIMID 177

Query: 103 IHPYDAIQSFLSELENLIHFY 123
                         E L+H +
Sbjct: 178 RA------------EVLLHDH 186


>gnl|CDD|241151 cd12707, RRM_LARP4, RNA recognition motif in vertebrate
          La-related protein 4 (LARP4).  This subgroup
          corresponds to the RRM of LARP4, a cytoplasmic factor
          that can bind poly(A) RNA and interact with poly(A)
          binding protein (PABP). It may play a role in promoting
          translation by stabilizing mRNA. LARP4 is structurally
          related to the La autoantigen. Like other La-related
          proteins (LARPs) family members, LARP4 contains a La
          motif (LAM) and an RNA recognition motif (RRM), also
          termed RBD (RNA binding domain) or RNP
          (ribonucleoprotein domain). .
          Length = 77

 Score = 25.4 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 30 IPESKMSADIQNHFKSENCP 49
          IPE+    +++  FKSENCP
Sbjct: 8  IPETTPVEEVKALFKSENCP 27


>gnl|CDD|178229 PLN02621, PLN02621, nicotinamidase.
          Length = 197

 Score = 25.5 bits (56), Expect = 7.8
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 15/49 (30%)

Query: 31 PESKMSA----DIQNHFKSENCPINMLNL-------RGADIPYNPVFFS 68
          P+ K +A    D+QN+F S   PI +  L       R A I   PVFF+
Sbjct: 16 PDPKQAALLVIDMQNYFSSMAEPI-LPALLTTIDLCRRASI---PVFFT 60


>gnl|CDD|177093 CHL00194, ycf39, Ycf39; Provisional.
          Length = 317

 Score = 25.7 bits (57), Expect = 8.4
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 14  VFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINMLNLRGADIPYNPVFFSYLI 71
           +FFS   I N + + +IP  K+ +DI+   K    P  +  L G        FF  LI
Sbjct: 106 IFFS---ILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTIFRLAG--------FFQGLI 152


>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
          Length = 451

 Score = 25.6 bits (56), Expect = 8.9
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 60  IPYNPVFFSYLIITNNDV--HLFIPESKMSADIQN 92
           IPY  +   Y++   NDV  HL I E ++  ++++
Sbjct: 325 IPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLES 359


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0719    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,802,519
Number of extensions: 575658
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 25
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)