RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7580
         (133 letters)



>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
           cytoplasm, hydrolase, manganese, metal-binding,
           metalloprotease, protease; HET: P6G; 1.60A {Homo
           sapiens}
          Length = 623

 Score = 87.3 bits (217), Expect = 2e-21
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 53  LNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSAD-IQNHFNSENCP-----ISIHPY 106
            NLRG+D+ +NPVFFSY II    + LFI   ++ A  ++ H   +        I +HPY
Sbjct: 209 FNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPY 268

Query: 107 DAIQSFLSEL 116
            +I S L  L
Sbjct: 269 KSILSELKAL 278



 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 2   LNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSAD-IQNHFKSENCPINMLNLRGADI 60
            NLRG+D+ +NPVFFSY II    + LFI   ++ A  ++ H   +        ++    
Sbjct: 209 FNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVH-- 266

Query: 61  PYNPVF 66
           PY  + 
Sbjct: 267 PYKSIL 272


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 32/155 (20%), Positives = 46/155 (29%), Gaps = 56/155 (36%)

Query: 1   MLNLRGADIPYNPVFFSYLIITNTDVHLFIPESKMSADIQNHFKSENCPINM-------- 52
           ML++    +    V   Y+  TN+  HL  P  K   +I       N   N+        
Sbjct: 338 MLSISN--LTQEQV-QDYVNKTNS--HL--PAGK-QVEISLV----NGAKNLVVSGPPQS 385

Query: 53  -----LNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNHFNSENCPISI--H- 104
                L LR A  P           +  D    IP S+      N F     P++   H 
Sbjct: 386 LYGLNLTLRKAKAP-----------SGLDQSR-IPFSERKLKFSNRFL----PVASPFHS 429

Query: 105 PY--DAIQSFLSELEN---------L-IHFYSTWD 127
                A      +L           + I  Y T+D
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464



 Score = 30.8 bits (69), Expect = 0.12
 Identities = 14/92 (15%), Positives = 21/92 (22%), Gaps = 36/92 (39%)

Query: 67  FSYLIITNNDVHLFI---------PESKMSADIQNHFNSENC---PISIHPYDA------ 108
           F    +  ND+H               K    I+N+  +      P       A      
Sbjct: 91  FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150

Query: 109 ---------------IQSFLSELENLIHFYST 125
                             +  EL +L   Y T
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDL---YQT 179


>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A
           {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 3q24_A*
           3c3l_A 3c46_A 3c2p_A* 2po4_A
          Length = 1118

 Score = 26.7 bits (57), Expect = 2.8
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 50  INMLNLRGADIPYNPVFFSYLIITNNDVHLFIPESKMSADIQNH---FNSENCPISIHPY 106
           I  +  +  DI   P+ ++Y +     + +    +  SA +             +S    
Sbjct: 410 IEQVRAQSEDISTVPIHYAYNMTRVGRMQMLGKYNPQSAKLVREAILPTKATLDLSNQNN 469

Query: 107 DAIQSF 112
           +   +F
Sbjct: 470 EDFSAF 475


>1ve4_A ATP phosphoribosyltransferase; riken structural
          genomics/proteomics initiative structural genomics;
          1.20A {Thermus thermophilus} SCOP: c.94.1.1
          Length = 206

 Score = 25.2 bits (56), Expect = 7.8
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 43 FKSENCPINMLNLRGADIP 61
             +   + +L LR  D+P
Sbjct: 40 LHGKEGGVALLELRNKDVP 58


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,034,301
Number of extensions: 101969
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 11
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)