BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7582
(661 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
Length = 1175
Score = 1273 bits (3295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/657 (93%), Positives = 625/657 (95%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+ET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT+V++GE+P+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKKRHIDNLKERDYNNYGWQVLV SGVVEYIDTLEEETTMIAM
Sbjct: 621 ICRPLLIVENGSLLLKKRHIDNLKERDYNNYGWQVLVSSGVVEYIDTLEEETTMIAM 677
>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris
striicornis]
Length = 1175
Score = 1272 bits (3291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/657 (93%), Positives = 624/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS EVET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEVET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT++R+GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIIREGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
+QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ESQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG LLLKKRHI+NLKERDYNNYGWQVLV SGVVEYIDTLEEETTMIA+
Sbjct: 621 ICRPLLIVENGQLLLKKRHIENLKERDYNNYGWQVLVSSGVVEYIDTLEEETTMIAI 677
>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
Length = 1176
Score = 1257 bits (3252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/657 (91%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIA+L
Sbjct: 201 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGSLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
Length = 1174
Score = 1256 bits (3251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/657 (91%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 20 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ GEEP+
Sbjct: 80 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEPI 139
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 140 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 199
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIA+L
Sbjct: 200 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVL 259
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 260 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 319
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 320 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 379
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 380 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 439
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 440 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 499
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 500 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 559
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 560 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 619
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKKRHID LKER+YNN+GWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 620 ICRPLLIVENGNLLLKKRHIDMLKEREYNNFGWQVLVASGVVEYIDTLEEETVMIAM 676
>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
Length = 1175
Score = 1256 bits (3249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 603/657 (91%), Positives = 621/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+ET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+P+PMMPNEARLRNLTYSAPLYVDITKTV+++GE+PV
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKDSKYAYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDSKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGL+YSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI +NG LLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVDNGKLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
Length = 1175
Score = 1255 bits (3248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/657 (91%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTV ++GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVAKEGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+A+K EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+R+KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKKRHI+ LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGTLLLKKRHIEMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
Length = 1176
Score = 1254 bits (3245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/657 (91%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+ET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GE+P+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRI+AIL
Sbjct: 201 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGL+YSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLKYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI +NG LLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVDNGRLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
Length = 1175
Score = 1253 bits (3241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/657 (91%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTV ++GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVAKEGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+A+K EIRSCLEHSSRPTSTLWVNMMAR GQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVNMMARCGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+R+KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKKRHI+ LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGTLLLKKRHIEMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
Length = 1176
Score = 1253 bits (3241), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/657 (91%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+ET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV++ G+EPV
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIKDGQEPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
T+H+KSFIGKIPIMLRST+CLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 VTEHEKSFIGKIPIMLRSTFCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFN+ELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNMELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI EN +LLLK+ H+DNLK+RDYNNY WQ LV SGVVEYIDTLEEETTMIAM
Sbjct: 621 ICRPLLIVENQTLLLKRSHVDNLKQRDYNNYKWQELVSSGVVEYIDTLEEETTMIAM 677
>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
Length = 1175
Score = 1251 bits (3238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/657 (91%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E G+LLLKKRH+D LKER+YNN+GWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVEGGNLLLKKRHVDMLKEREYNNFGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
Length = 1173
Score = 1250 bits (3235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/657 (91%), Positives = 621/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI+LQAEAQHT+ E+ET
Sbjct: 19 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTTGEIET 78
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+VR GE+P+
Sbjct: 79 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVRDGEDPI 138
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
QHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 139 EAQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 198
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 199 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 258
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 259 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 318
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGARPGVT+E+RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 319 IGSRGARPGVTREKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 378
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 379 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 438
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 439 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 498
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 499 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 558
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRR+MDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 559 IADATKIFVNGCWVGIHRDPEQLMATLRKLRREMDIIVSEVSMIRDIRDREIRIYTDAGR 618
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKKRHID LK+R+YNNYGWQVLV SG+VEYIDTLEEET MIAM
Sbjct: 619 ICRPLLIVENGSLLLKKRHIDMLKDREYNNYGWQVLVSSGLVEYIDTLEEETVMIAM 675
>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
Length = 1174
Score = 1250 bits (3235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/657 (91%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT+ E+E
Sbjct: 20 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTAGEIEN 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ EEP+
Sbjct: 80 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDKEEPI 139
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 140 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 199
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 200 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 259
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 260 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 319
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVT+E+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 320 IGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 379
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNL+LAIKTKII
Sbjct: 380 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKII 439
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 440 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 499
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 500 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 559
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 560 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 619
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 620 ICRPLLIVENGSLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 676
>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
Length = 1175
Score = 1249 bits (3232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/657 (91%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT++++ EEPV
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTILKENEEPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+A+K EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI + G+LLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVDGGNLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
Length = 1175
Score = 1249 bits (3231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/657 (91%), Positives = 618/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN+ALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNIALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFID+GKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDKGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E GSLLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MI+M
Sbjct: 621 ICRPLLIVEGGSLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMISM 677
>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
Length = 1176
Score = 1249 bits (3231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/657 (91%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVIN+YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 20 LWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEH 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP YLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V++GEEP+
Sbjct: 80 PPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEPI 139
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQKSFIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 140 ETQHQKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 199
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 200 ATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 259
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 260 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 319
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 320 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 379
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRM+AQKFIDRGKDFNLELAIKTKII
Sbjct: 380 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFIDRGKDFNLELAIKTKII 439
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 440 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 499
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 500 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 559
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 560 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 619
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG LLLK+ H++ LKER++NNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 620 ICRPLLIVENGQLLLKRNHVNMLKEREFNNYGWQVLVASGVVEYIDTLEEETVMIAM 676
>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
Length = 1175
Score = 1247 bits (3227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/657 (90%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V++GE+P+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+MKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQ++KK+AIGQRIIAIL
Sbjct: 201 ATNTVYVFAMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNL+LAIKTK+I
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLDLAIKTKMI 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TD+GR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDSGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG LLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGKLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
Length = 1150
Score = 1246 bits (3225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/652 (91%), Positives = 614/652 (94%), Gaps = 26/652 (3%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH S E+ETPPRYL
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIETPPRYL 60
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+VR GEEP+ TQHQ
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVRDGEEPIETQHQ 120
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
K+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
YVFSMKD KYAYKTEIRSC EHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAILPYI+Q
Sbjct: 181 YVFSMKDGKYAYKTEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIRQ 240
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
ARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDR
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DHY VRMYAQKFIDRGKDFNLELAIKTKIITDGLR
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKNLTKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTL
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WGMICPAETPEGAAVGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAPSAIADAT
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAIADAT 540
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPL
Sbjct: 541 KIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPL 600
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI ENGSLLLKKRH+D LKER+YNNYGWQVLV GVVEYIDTLEEET MIAM
Sbjct: 601 LIVENGSLLLKKRHVDMLKEREYNNYGWQVLVAQGVVEYIDTLEEETVMIAM 652
>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
Length = 1175
Score = 1246 bits (3224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/657 (91%), Positives = 618/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+P+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK+RRIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKDRRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E G+LLLKKRH+D LKE++YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVEGGTLLLKKRHVDMLKEKEYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
Length = 1176
Score = 1246 bits (3223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/657 (91%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQH+S E+ET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHSSGEIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP+YLLKF+QIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V++ EEP+
Sbjct: 81 PPKYLLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKENEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKIFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAI+
Sbjct: 201 ATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIV 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKK+HID+LKERDYNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGALLLKKKHIDHLKERDYNNYGWQNLVASGVVEYIDTLEEETVMIAM 677
>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
Length = 1175
Score = 1245 bits (3222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/657 (90%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+ET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSAEIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP YLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ G++P+
Sbjct: 81 PPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKDSKYAYK EIRSCLEHSSRPTS+LWVNMMARGGQ++KK+AIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDSKYAYKAEIRSCLEHSSRPTSSLWVNMMARGGQAIKKAAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNL+LAIKTK+I
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMI 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKK H+D LK+R+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGNLLLKKSHVDMLKDREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
Length = 1174
Score = 1245 bits (3222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/657 (90%), Positives = 620/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 20 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+P+
Sbjct: 80 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPI 139
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 140 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 199
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+MKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQ++KK+AIGQRIIAIL
Sbjct: 200 ATNTVYVFAMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAIL 259
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 260 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 319
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGA+PGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 320 IGARGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 379
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFID+GKDFNL+LAIKTK+I
Sbjct: 380 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDKGKDFNLDLAIKTKMI 439
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 440 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 499
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 500 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 559
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 560 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 619
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 620 ICRPLLIVENGNLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 676
>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
Length = 1175
Score = 1245 bits (3221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/657 (90%), Positives = 618/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFD+KGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDDKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ G+EPV
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDEPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQ+QK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQNQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+K+EIRSC EHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAFKSEIRSCQEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
I+DATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 ISDATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG LLLKK+HID LKE++YNNYGWQVLV GVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGHLLLKKKHIDMLKEKEYNNYGWQVLVAQGVVEYIDTLEEETVMIAM 677
>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
Length = 1172
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 599/657 (91%), Positives = 617/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP IDLQAEAQHTS E+ET
Sbjct: 18 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTSGEIET 77
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT+V+ G++ V
Sbjct: 78 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTIVQDGKDSV 137
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 138 ETQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 197
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 198 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 257
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD EMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 258 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEAFVVQEQNVALNF 317
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 318 IGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 377
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFID+GKDFNLELAIKTKII
Sbjct: 378 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDKGKDFNLELAIKTKII 437
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 438 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQ 497
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 498 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 557
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 558 IADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 617
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI EN +LLLKKRH+D LKERDYNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 618 ICRPLLIVENRNLLLKKRHVDMLKERDYNNYGWQVLVASGVVEYIDTLEEETVMIAM 674
>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
Length = 1175
Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/657 (90%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGELEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P RYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+P+
Sbjct: 81 PSRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+K+EIRSCLEHSSRPTSTLWVNMMARGGQ++KK+AIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQN+ALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNIALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGTRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNL+LAIKTK+I
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLI 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IA+ATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IANATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGTLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
Length = 1175
Score = 1243 bits (3217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/657 (91%), Positives = 616/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH S E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHISGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP YLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+ ++GEEP+
Sbjct: 81 PPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKEGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHN+LWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNSLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E GSLLLKK+HID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVEGGSLLLKKKHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
Length = 1176
Score = 1243 bits (3216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/657 (90%), Positives = 616/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+P+PMMPNEARLRNLTYSAPLYVDITKTVV+ GE+P+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVVKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLWVNM+ARGGQS+KKS++GQ+IIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGA+PGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGGRGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG LLLKKRH+D LKER+YNNYGWQ LV S VEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSAVEYIDTLEEETVMIAM 677
>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
Length = 1150
Score = 1242 bits (3214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/652 (91%), Positives = 615/652 (94%), Gaps = 26/652 (3%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+ETPPRYL
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYL 60
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V++GEEP+ TQHQ
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQ 120
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
K+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
YVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAILPYIKQ
Sbjct: 181 YVFSMKDGKFAYKCEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQ 240
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
ARPGVTKE+RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDR
Sbjct: 301 ARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DHY VRMYAQKFIDRGKDFNLELAIKTKIITDGLR
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
YSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTL
Sbjct: 421 YSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT
Sbjct: 481 WGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 540
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPL
Sbjct: 541 KIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPL 600
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI ENG LLLKKR+ID LKERDYNNYGWQ+LV SGVVEYIDTLEEET MIAM
Sbjct: 601 LIVENGQLLLKKRNIDQLKERDYNNYGWQMLVASGVVEYIDTLEEETVMIAM 652
>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
Length = 1175
Score = 1242 bits (3214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/657 (90%), Positives = 618/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEVEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLMELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+MKD KYA+K+EIRSCLEHSSRPTSTLWVNMMARGGQ++KK+AIGQRIIAIL
Sbjct: 201 ATNTVYVFAMKDGKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIP+M+VFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPVMVVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNL+LAIKTK+I
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLI 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG LLLKKRHID LKER+YNNYGWQVLV GVVEYIDTLEEET MIA+
Sbjct: 621 ICRPLLIVENGQLLLKKRHIDMLKEREYNNYGWQVLVAQGVVEYIDTLEEETVMIAI 677
>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
Length = 1176
Score = 1242 bits (3213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/657 (90%), Positives = 617/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT+ EVE
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVEN 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+P+PMMPNEARLRNLTYSAPLYVDITK++V++GEE V
Sbjct: 82 PPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKSIVKEGEEAV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLWVNM+ARGGQS+KKSAIGQRIIAI+
Sbjct: 202 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAIV 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 322 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKT+II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTRII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E G L LKKRHI+ LKER+YNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVEGGKLSLKKRHIEMLKEREYNNYGWQDLVASGVVEYIDTLEEETVMIAM 678
>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
Length = 1174
Score = 1242 bits (3213), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/657 (90%), Positives = 618/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI+LQAEAQHT+ E+E
Sbjct: 20 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTAGEIEN 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP+YLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ EEP+
Sbjct: 80 PPKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDKEEPI 139
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 140 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 199
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 200 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 259
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 260 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 319
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVT+E+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 320 IGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 379
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNL+LAIKTKII
Sbjct: 380 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKII 439
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 440 TDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 499
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 500 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 559
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 560 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 619
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKK HID LKER++NNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 620 ICRPLLIVENGNLLLKKHHIDMLKEREHNNYGWQVLVASGVVEYIDTLEEETVMIAM 676
>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
nigrotuberculatum]
Length = 1177
Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/657 (90%), Positives = 616/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVIN+YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI+LQAE+QHT E++T
Sbjct: 22 LWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAESQHTHGEIDT 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P +Y +KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV++ GEEPV
Sbjct: 82 PTKYQIKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIKDGEEPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQH KSFIGKIPIMLRSTYCLL GL DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 VTQHSKSFIGKIPIMLRSTYCLLFGLNDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+K EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGARPGVTK++RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGSRGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNL+LAIKTK+I
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLI 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
I DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI+TDAGR
Sbjct: 562 IVDATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG LLLKKRHID+LKERDYNNYGWQVLV +GVVEYIDTLEEETTMIAM
Sbjct: 622 ICRPLLIVENGKLLLKKRHIDSLKERDYNNYGWQVLVSNGVVEYIDTLEEETTMIAM 678
>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
Length = 1179
Score = 1239 bits (3207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/657 (90%), Positives = 617/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT+ EVET
Sbjct: 25 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVET 84
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+P+PMMPNEARLRNLTYSAPLYVDITK+V+++GEE +
Sbjct: 85 PPRYLLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKSVIKEGEEAI 144
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 145 ETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 204
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNM+ARGGQS+KKSAIGQRIIA++
Sbjct: 205 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAVV 264
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 265 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 324
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 325 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 384
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+Y+QKFIDRGKDFNLELAIKT+II
Sbjct: 385 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRIYSQKFIDRGKDFNLELAIKTRII 444
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 445 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 504
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 505 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 564
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 565 IADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 624
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E G L LKKRHI+ LKER+YNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 625 ICRPLLIVEGGRLALKKRHIEMLKEREYNNYGWQDLVASGVVEYIDTLEEETVMIAM 681
>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
Length = 1150
Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/652 (91%), Positives = 613/652 (94%), Gaps = 26/652 (3%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E PPRYL
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYL 60
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ G+EP+ +QHQ
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGDEPMESQHQ 120
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
K+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
YVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAI+PYIKQ
Sbjct: 181 YVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIMPYIKQ 240
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
EIPIMIVFRALGFVADRDILEHIIYDFDD EMMEMVKPSLDEAFVIQEQNVALNFIGARG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
ARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDR
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DHY VRMYAQKFIDRGKDFNLELAIKTKIITDGLR
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTL
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 540
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPL
Sbjct: 541 KIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPL 600
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI ENG LLLKKRHID LK+R+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 601 LIVENGKLLLKKRHIDMLKDREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 652
>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
Length = 1150
Score = 1238 bits (3203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/652 (91%), Positives = 614/652 (94%), Gaps = 26/652 (3%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E PPRYL
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYL 60
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+P+ TQHQ
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQ 120
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
K+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
YVFSMKD K+A+K EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAILPYIKQ
Sbjct: 181 YVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQ 240
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
ARPGVTK++RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDR
Sbjct: 301 ARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DHY VR+YAQKFIDRGKDFNLELAIKTKIITDGLR
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRIYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTL
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 540
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPL
Sbjct: 541 KIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPL 600
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI E G+LLLKKRHID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 601 LIVEGGNLLLKKRHIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 652
>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
Length = 1175
Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/657 (90%), Positives = 615/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP IDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRY+LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT++ G++PV
Sbjct: 81 PPRYVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIMDGKDPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+A+K EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD EMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDEAFVVQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI EN +LLLKKRHID LKERDY NYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENRTLLLKKRHIDMLKERDYTNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
Length = 1175
Score = 1236 bits (3199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/657 (90%), Positives = 619/657 (94%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI+LQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTSGEMEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V++GEEP+
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGEEPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS++CLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 VTQHQKTFIGKIPIMLRSSFCLLSKLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+K+EIRSCLEHSSRPTSTLWVNMMARGGQS+KK+AIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKAAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNL+LAIKTK+I
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMI 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPL+I ENGSLLLKK HID LK+R+YNNYGWQ LV SGVVEYIDTLEEETTMIA+
Sbjct: 621 ISRPLIIVENGSLLLKKSHIDMLKDREYNNYGWQGLVGSGVVEYIDTLEEETTMIAI 677
>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
Length = 1176
Score = 1236 bits (3198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/657 (90%), Positives = 617/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQH+S E+ET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEAQHSSGEIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP+Y LKF+QIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V++ E+P+
Sbjct: 81 PPKYHLKFDQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKENEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSM+ KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRI+AI+
Sbjct: 201 ATNTVYVFSMQGGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAIV 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL+F
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALSF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFID+GKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDKGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK+HID LKERDYNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGSLLLKKKHIDQLKERDYNNYGWQNLVASGVVEYIDTLEEETVMIAM 677
>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
Length = 1173
Score = 1235 bits (3196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI+LQAEAQHTS E+E
Sbjct: 19 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTSGEIEN 78
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDI K V + EEPV
Sbjct: 79 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDILKRVEKHKEEPV 138
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
T HQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 139 ETLHQKTFIGKIPIMLRSTYCLLSTLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 198
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRI+AIL
Sbjct: 199 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAIL 258
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPI+I FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 259 PYIKQEIPIIIAFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 318
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 319 IGTRGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 378
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 379 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 438
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 439 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 498
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 499 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 558
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 559 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 618
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKKRHID LKERDY+NYGWQ+LV GVVEYIDTLEEET MIAM
Sbjct: 619 ICRPLLIVENGSLLLKKRHIDRLKERDYDNYGWQMLVAEGVVEYIDTLEEETVMIAM 675
>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
Length = 1174
Score = 1235 bits (3195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/657 (90%), Positives = 614/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH S E+ET
Sbjct: 19 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIET 78
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP YLLKFEQIYLSKPTHWEKDG+ + MMPNEARLRNLTYSAPLYVDITKT+V++GE+P+
Sbjct: 79 PPHYLLKFEQIYLSKPTHWEKDGAAAAMMPNEARLRNLTYSAPLYVDITKTIVKEGEDPI 138
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGL DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 139 ETQHQKTFIGKIPIMLRSTYCLLNGLIDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 198
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+A+K EIRSCLEHSSRPTSTLWVNMM+RGGQS+KK+AIGQRIIAI+
Sbjct: 199 ATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVNMMSRGGQSIKKNAIGQRIIAIV 258
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 259 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 318
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 319 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 378
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 379 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 438
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 439 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 498
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 499 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 558
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 559 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 618
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI +NG LLLKKRHID LKERD NNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 619 ICRPLLIVDNGILLLKKRHIDMLKERDLNNYSWQVLVASGVVEYIDTLEEETVMIAM 675
>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
Length = 1150
Score = 1234 bits (3194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/652 (91%), Positives = 611/652 (93%), Gaps = 26/652 (3%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+ETPPRYL
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYL 60
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTVV++GE+P+ TQHQ
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKEGEDPIDTQHQ 120
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
K+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
YVF+MKD K+AYK EIRSC EHSSRPTSTLWVNMMAR GQS+KKSAIGQRIIAILPYIKQ
Sbjct: 181 YVFAMKDGKFAYKAEIRSCQEHSSRPTSTLWVNMMARSGQSIKKSAIGQRIIAILPYIKQ 240
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
ARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+L RRELDDR
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDR 360
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DHY VRMYAQKFIDRGKDFNLELAIKTKIITDGLR
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTL
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DAT
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAILDAT 540
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPL
Sbjct: 541 KIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPL 600
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI EN +LLLKKRHID LK+RDYNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 601 LIVENSNLLLKKRHIDMLKDRDYNNYGWQFLVSSGVVEYIDTLEEETVMIAM 652
>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
Length = 1175
Score = 1233 bits (3190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 615/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+L AEAQH+S E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P RYLLKF+QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT + +G++PV
Sbjct: 81 PTRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKLVEGQDPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQR+IAIL
Sbjct: 201 ATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PY+KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 261 PYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLL+K HID LK+RDYNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGSLLLRKNHIDMLKDRDYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
Length = 1179
Score = 1232 bits (3188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E+
Sbjct: 25 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIES 84
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP+Y LKFEQIYLSKPTHWEKDG+P+PMMPNEARLRNLTYSAPLYVDITK VV+ GE V
Sbjct: 85 PPKYFLKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKLVVKDGENTV 144
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 145 ETQHQKTFIGKIPIMLRSTYCLLSGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 204
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+MKD K+AYK EIRSC EHSSRPTSTLWVNMMAR GQS+KKSAIGQRIIAIL
Sbjct: 205 ATNTVYVFAMKDGKFAYKAEIRSCQEHSSRPTSTLWVNMMARSGQSIKKSAIGQRIIAIL 264
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 265 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 324
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+L RR
Sbjct: 325 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRR 384
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 385 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 444
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 445 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 504
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 505 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 564
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
I DATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 565 ILDATKIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 624
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK HID LK+RDYNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 625 ICRPLLIVENGSLLLKKVHIDMLKDRDYNNYGWQFLVSSGVVEYIDTLEEETVMIAM 681
>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
Length = 1150
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/652 (90%), Positives = 613/652 (94%), Gaps = 26/652 (3%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT+ EVETPPRYL
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVETPPRYL 60
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKFEQIYLSKPTHWEKDG+PS MMPNEARLRNLTYSAPLYVDITKT++R+GE+ V TQ+
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPSAMMPNEARLRNLTYSAPLYVDITKTIIREGEDQVVTQNP 120
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
K+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
YVF+MKD K+AYK+EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAILPYIKQ
Sbjct: 181 YVFAMKDGKFAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQ 240
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 300
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
ARPGVTKE+RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDR
Sbjct: 301 ARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DHY VRMYAQKFIDRGKDFNLELAIKTKIITDGLR
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
YSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTL
Sbjct: 421 YSLATGNWGDQKKAHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT
Sbjct: 481 WGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 540
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPL
Sbjct: 541 KIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPL 600
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI ENG LLLKKR+ID LKERDYNNYGWQ+LV SGVVEYIDTLEEET MIAM
Sbjct: 601 LIVENGQLLLKKRNIDQLKERDYNNYGWQMLVASGVVEYIDTLEEETVMIAM 652
>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
Length = 1175
Score = 1231 bits (3186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ E+PV
Sbjct: 81 PVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDAEDPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLWVNMMA+ G S+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMAKSGASIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 321 IGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E +LLLKKRHID LKERDY NYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVEGQNLLLKKRHIDMLKERDYTNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
Length = 1151
Score = 1231 bits (3185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/652 (90%), Positives = 611/652 (93%), Gaps = 26/652 (3%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS E+E PPRYL
Sbjct: 1 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYL 60
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKFEQIYLSKPTHWEKDG+P+PMMPNEARLRNLTYSAPLYVDITKTVV+ GE+P+ TQHQ
Sbjct: 61 LKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQ 120
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
K+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV
Sbjct: 121 KTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 180
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
YVFSMKD KYAYK+EIRSCLEHSSRPTSTLWVNM+ARGGQS+KKS++GQ+IIAILPYIKQ
Sbjct: 181 YVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQ 240
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIG RG
Sbjct: 241 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGGRG 300
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
A+PGVT+E+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDR
Sbjct: 301 AKPGVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DHY VRMYAQKFIDRGKDFNLELAIKTKIITDGLR
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 420
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTL
Sbjct: 421 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 480
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT
Sbjct: 481 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 540
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPL
Sbjct: 541 KIFVNGCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPL 600
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI ENG LLLKKRH+D LKER+YNNYGWQ LV S VEYIDTLEEET MIAM
Sbjct: 601 LIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSAVEYIDTLEEETVMIAM 652
>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
Length = 1954
Score = 1231 bits (3185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/657 (89%), Positives = 614/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+L AEAQH+S E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P RYLLKF+QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT + +G++PV
Sbjct: 81 PTRYLLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKIVEGQDPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQR+IAIL
Sbjct: 201 ATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PY+KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 261 PYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E GSLLL+K HID LK+RDYNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVEGGSLLLRKHHIDMLKDRDYNNYGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
Length = 1176
Score = 1230 bits (3182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/657 (89%), Positives = 615/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+L AEAQHT+ ++ET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTTGDIET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P RY+LKF+QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT + +G++PV
Sbjct: 82 PTRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKIVEGQDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLW NMMARGGQS+KKSAIGQR+IAIL
Sbjct: 202 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PY+KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFNLELAIKTKII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLL+K H+D LKERDYNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLRKNHVDMLKERDYNNYGWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 1175
Score = 1229 bits (3181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 589/657 (89%), Positives = 614/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVIN+YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S E+E
Sbjct: 21 LWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPIIDLQAEAQHASGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP YLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITK ++++GE+P+
Sbjct: 81 PPHYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKKIIKEGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
T+HQKSFIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETKHQKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYK EIRSCLEHSSRPTSTLWVNMMARGGQS+KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKERRIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRM+AQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKN+ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGAAVGLVKNIALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI E G LLLKK H++ LKER+YNN+GWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVEGGQLLLKKNHVNMLKEREYNNFGWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
Length = 1176
Score = 1229 bits (3180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/657 (89%), Positives = 614/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+L AEAQHTS ++ET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTSGDIET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P RY+LKF+QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT + +G++PV
Sbjct: 82 PTRYVLKFDQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKIVEGQDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLW NMMARGGQS+KKSAIGQR+IAIL
Sbjct: 202 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PY+KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 382 ELDDRDHYGNKRLDLAGPLMALLFRGLFKSLVKEVRMYAQKFIDRGKDFNLELAIKTKII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQL TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLTATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLL+K H+D LK+RDYNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLRKNHVDMLKDRDYNNYGWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
Length = 1176
Score = 1227 bits (3174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/657 (89%), Positives = 612/657 (93%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G++P+
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGQDPI 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 140 kDa polypeptide
gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
Length = 1176
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
Length = 1176
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
Length = 1176
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
Length = 1176
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
Length = 1176
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
Length = 1176
Score = 1226 bits (3172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
Length = 1176
Score = 1225 bits (3170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/657 (89%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGTLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
Length = 1175
Score = 1225 bits (3170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/657 (89%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 81 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 321 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENGTLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 677
>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
Length = 1176
Score = 1225 bits (3169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/657 (89%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGMDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENG+LLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGTLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
terrestris]
gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
impatiens]
Length = 1175
Score = 1217 bits (3148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/657 (89%), Positives = 609/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+P+
Sbjct: 81 PVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLW+NMMA+ G S+KKSAIGQRIIAI+
Sbjct: 201 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAII 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 321 IGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI E +LLLKKRHID LKERDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 621 ISRPLLIVEGQTLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAM 677
>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Megachile rotundata]
Length = 1175
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/657 (89%), Positives = 609/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+P+
Sbjct: 81 PVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLW+NMMA+ G S+KKSAIGQRIIAI+
Sbjct: 201 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAII 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 321 IGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI E +LLLKKRHID LKERDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 621 ISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAM 677
>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
Length = 1174
Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/672 (87%), Positives = 615/672 (91%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP IDLQAEAQH+S EVE
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHSSGEVEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRY+LKFEQIYLSKPTHWEKDG+P+ MMPNEARLRNLTYSAPLYVDITKTV ++GEE V
Sbjct: 81 PPRYVLKFEQIYLSKPTHWEKDGAPTAMMPNEARLRNLTYSAPLYVDITKTVHKEGEEQV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNG+ DRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNGMNDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD K+AYKTEIRSCLEHSSRPTSTL+VNM+ARGGQ +KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSMKDGKFAYKTEIRSCLEHSSRPTSTLYVNMLARGGQGIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLMAFLFRALFKTLMKEVRMYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS++RDI+DREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI EN LLLKKRH+D LK+R+Y N+ WQ LV +GVVEYIDTLEEET MIAM
Sbjct: 621 ICRPLLIVENCKLLLKKRHVDMLKQREYINFSWQELVATGVVEYIDTLEEETAMIAMSPE 680
Query: 635 LVQSGVVEYIDT 646
++ G Y T
Sbjct: 681 DLRQGKDAYCTT 692
>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Apis florea]
Length = 1175
Score = 1214 bits (3141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/657 (88%), Positives = 608/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNEARL NLTYSAPLYVDITKT+V+ GE+P+
Sbjct: 81 PVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLXNLTYSAPLYVDITKTIVKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLW+NMMA+ G S+KKSAIGQRIIAI+
Sbjct: 201 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAII 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 321 IGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI E +LLLKKRHID LKERDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 621 ISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAM 677
>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
Length = 1175
Score = 1214 bits (3140), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/657 (88%), Positives = 607/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+ + GE+P+
Sbjct: 81 PVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLW+NMMA+ G S+KKSAIGQRIIAI+
Sbjct: 201 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAII 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 321 IGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI E +LLLKKRHID LKERDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 621 ISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAM 677
>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
Length = 1178
Score = 1212 bits (3136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/657 (88%), Positives = 608/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWI+INAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQIDLQAEAQHT+ E+E
Sbjct: 24 LWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTTGEIEN 83
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+PV
Sbjct: 84 PVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPV 143
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 144 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 203
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLW+NMMA+ G S+KKSAIGQRIIAI+
Sbjct: 204 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAII 263
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIM+VFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 264 PYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 323
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGA+PGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 324 IGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 383
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 384 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 443
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 444 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 503
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 504 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 563
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 564 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 623
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI E +LLLKKRHID LKERDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 624 ISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAM 680
>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
Length = 1142
Score = 1212 bits (3135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/672 (86%), Positives = 615/672 (91%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI+AYFDEKGLVRQQLDSFDEFIQMSVQRIVED+PQIDLQAEAQH S E+E
Sbjct: 21 LWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHASGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEEPV
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLN LTDRDL+ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLSELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF MKDSK+ +K E RSCLEHSSRPTSTLWVNM+ARGGQ ++KSAIGQRIIAIL
Sbjct: 201 ATNTVYVFQMKDSKFVFKAECRSCLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGA PGVTKERRIKY+REILQKEMLPHVGVSDFCETKKAY+LGYMVHRLLLA+LGRR
Sbjct: 321 IGARGAHPGVTKERRIKYSREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKEVRMYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEG AVGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IA+ATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGR
Sbjct: 561 IAEATKIFVNGCWVGIHRDPDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E+ LLLK+RHID+LKER+YNNY WQ LV SGVVEYIDTLEEET M++M
Sbjct: 621 ICRPLLIVEDQKLLLKRRHIDSLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLSMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q Y T
Sbjct: 681 DLQDKGFAYCST 692
>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
[Rhipicephalus pulchellus]
Length = 1149
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/673 (86%), Positives = 615/673 (91%), Gaps = 27/673 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI+AYFDEKGLVRQQLDSFDEFIQMSVQRIVED+PQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++ EE V
Sbjct: 81 PPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVLKENEEAV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLN LTDRDL+ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLNNLTDRDLSELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF MKDSKYAYK E RSCLEHSSRPTSTLWVNM+ARGGQ ++KSAIGQRIIAIL
Sbjct: 201 ATNTVYVFQMKDSKYAYKAECRSCLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGARPGVTKE+RIKY++EILQKEMLPHVGVSDFCETKKAY+LGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGARPGVTKEKRIKYSKEILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT-KI 393
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKT
Sbjct: 381 ELDDRDHYGNKRLDLAGPLMAFLFRGLFRNLTKEVRMYAQKFIDRGKDFNLELAIKTXXX 440
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPR
Sbjct: 441 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPR 500
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLHNTLWGMICPAETPEG AVGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPS
Sbjct: 501 QLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPS 560
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
AIA+ATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAG
Sbjct: 561 AIAEATKIFVNGCWVGIHRDPDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAG 620
Query: 574 RICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
RICRPLLI E+ LLLK+RHIDNLK+R+YNNY WQ LV SGVVEYIDTLEEET M++M
Sbjct: 621 RICRPLLIVEDQKLLLKRRHIDNLKDREYNNYSWQDLVASGVVEYIDTLEEETVMLSMTP 680
Query: 634 VLVQSGVVEYIDT 646
+Q + Y T
Sbjct: 681 DDLQDKGLAYCST 693
>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
Length = 1178
Score = 1201 bits (3106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/657 (87%), Positives = 606/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWI+INAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQI+LQAEAQHT+ E+E
Sbjct: 24 LWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIELQAEAQHTTGEIEK 83
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P ++LLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+ + GE+PV
Sbjct: 84 PVKHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKDGEDPV 143
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 144 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 203
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK EIRSCLEHSSRPTSTLW+NMMA+ G S+KKSAIGQRIIAI+
Sbjct: 204 ATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAII 263
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIM+VFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 264 PYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 323
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGA+PGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 324 IGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 383
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKTKII
Sbjct: 384 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKII 443
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 444 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 503
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 504 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 563
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGR
Sbjct: 564 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGR 623
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI E +LLL+ RHI+ LKERDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 624 ISRPLLIVEGQNLLLQTRHINMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAM 680
>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
vitripennis]
Length = 1175
Score = 1200 bits (3104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 575/657 (87%), Positives = 605/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVINAYFDEKGLVRQQLDSFDEFI+MSVQRIVE+SPQIDLQAEAQH + ++ET
Sbjct: 21 VWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEESPQIDLQAEAQHRTGDIET 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+L+KFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEEP
Sbjct: 81 PTRHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEPT 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFS+KD KYAYK EIRSCLEHSSRP STLW+NMM++ G ++KKSAIGQRIIAIL
Sbjct: 201 ATNTVYVFSIKDGKYAYKAEIRSCLEHSSRPVSTLWINMMSKSGAAIKKSAIGQRIIAIL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGARPGVTKERRIKYAREILQKE LPHVGVSDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 321 IGSRGARPGVTKERRIKYAREILQKETLPHVGVSDFCETKKAYFLGYMVHRLLSASLGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLA+PRQ
Sbjct: 441 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLARPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 501 LHNTLWGMLCPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI EN LLLKKRHI+ LKERDYNN GWQ LV GVVEYIDTLEEET MIAM
Sbjct: 621 ISRPLLIVENQLLLLKKRHIEMLKERDYNNDGWQELVSQGVVEYIDTLEEETVMIAM 677
>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Nasonia vitripennis]
Length = 1174
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/657 (87%), Positives = 606/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVINAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQI+LQAEAQHT+ E+E
Sbjct: 20 VWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIELQAEAQHTTGEIEN 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P ++L+KFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+ + GEEP+
Sbjct: 80 PTKHLVKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIEKDGEEPI 139
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 140 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 199
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+K EIRSCLEHSSRPTSTLW+NMMA+ G ++KKSAIGQRI+A+L
Sbjct: 200 ATNTVYVFSMKDGKYAFKCEIRSCLEHSSRPTSTLWINMMAKSGANIKKSAIGQRIVAVL 259
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 260 PYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 319
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGARPGVTK++RIKYA+EILQKE LPHVG+SDFCETKKAYFLGYMVHRLL ASLGRR
Sbjct: 320 IGTRGARPGVTKDKRIKYAKEILQKETLPHVGISDFCETKKAYFLGYMVHRLLSASLGRR 379
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFNLELAIKTKII
Sbjct: 380 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKII 439
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAH ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 440 TDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 499
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 500 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 559
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDP+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 560 IADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 619
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I RPLLI EN +LLLKKRHID LK+RDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 620 ISRPLLIVENQTLLLKKRHIDMLKDRDYNNDGWQELVASGVVEYIDTLEEETVMIAM 676
>gi|147903615|ref|NP_001083372.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Xenopus
laevis]
gi|38014674|gb|AAH60458.1| MGC68569 protein [Xenopus laevis]
Length = 949
Score = 1194 bits (3090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 612/672 (91%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHT+ EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTVV++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKEGEEQI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTS++WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLK+RHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Pongo abelii]
gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1167
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 74 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 374 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 433
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 434 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 493
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 494 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 553
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 554 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 613
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 614 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 674 DLQEKEVAYCST 685
>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Canis lupus familiaris]
gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Ailuropoda melanoleuca]
gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Felis catus]
gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
Length = 1174
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Pan troglodytes]
gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
jacchus]
gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
[Pongo abelii]
gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
leucogenys]
gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
porcellus]
gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cricetulus griseus]
gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Otolemur garnettii]
gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Papio anubis]
gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
largest subunit [human, HeLa cells, Peptide, 1174 aa]
gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted)
[Rattus norvegicus]
gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
Length = 1174
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1174
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B
[Oryctolagus cuniculus]
Length = 1174
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
Length = 1167
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 74 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 374 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 433
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 434 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 493
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 494 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 553
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 554 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 613
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 614 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 674 DLQEKEVAYCST 685
>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1167
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 74 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 374 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 433
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 434 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 493
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 494 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 553
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 554 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 613
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 614 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 674 DLQEKEVAYCST 685
>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
Length = 1175
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 22 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 82 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 202 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 262 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 322 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 442 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 502 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 622 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 681
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 682 DLQEKEVAYCST 693
>gi|301616295|ref|XP_002937598.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Xenopus
(Silurana) tropicalis]
Length = 1151
Score = 1191 bits (3082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/672 (84%), Positives = 612/672 (91%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHT+ EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTTGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTVV++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKEGEEQI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTS++WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLK+RHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
Length = 1168
Score = 1191 bits (3081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 15 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 74
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 75 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 134
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 135 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 194
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 195 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 254
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 255 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 314
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 315 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 374
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 375 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 434
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 435 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 494
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 495 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 554
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 555 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 614
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 615 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 674
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 675 DLQEKEVAYCST 686
>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
Length = 1167
Score = 1191 bits (3081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 610/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 74 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAI TKII
Sbjct: 374 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAINTKII 433
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 434 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 493
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 494 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 553
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 554 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 613
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 614 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 674 DLQEKEVAYCST 685
>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
domestica]
gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
harrisii]
Length = 1174
Score = 1190 bits (3079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Equus caballus]
Length = 1174
Score = 1190 bits (3078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNL+LAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLQLAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
guttata]
Length = 1174
Score = 1190 bits (3078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GE+ +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
paniscus]
Length = 1226
Score = 1189 bits (3077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 73 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 132
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 133 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 192
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 193 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 252
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 253 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 312
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 313 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 372
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 373 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 432
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 433 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 492
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 493 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 552
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 553 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 612
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 613 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 672
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 673 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 732
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 733 DLQEKEVAYCST 744
>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
niloticus]
Length = 1174
Score = 1189 bits (3076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/672 (84%), Positives = 612/672 (91%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT++++GE+ +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+MMARGGQ +KKSAIGQRI++ L
Sbjct: 201 ATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKERRIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY +R+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGD KKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLK+RHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba
livia]
Length = 1168
Score = 1189 bits (3076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 15 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 74
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GE+ +
Sbjct: 75 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQL 134
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 135 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 194
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 195 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 254
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 255 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 314
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 315 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 374
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 375 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 434
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 435 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 494
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 495 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 554
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 555 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 614
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 615 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 674
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 675 DLQEKGVAYCST 686
>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
adamanteus]
Length = 1167
Score = 1189 bits (3076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GE+ +
Sbjct: 74 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 374 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 433
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 434 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 493
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 494 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 553
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 554 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 613
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 614 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 674 DLQEKGVAYCST 685
>gi|345319345|ref|XP_001521110.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2, partial
[Ornithorhynchus anatinus]
Length = 951
Score = 1189 bits (3075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
carolinensis]
Length = 1174
Score = 1187 bits (3072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTVV++GE+ +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKEGEDQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL +LNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCQLNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q + Y T
Sbjct: 681 DLQEKGIAYCST 692
>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
Length = 1167
Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/672 (84%), Positives = 610/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTH E+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 74 PPRYLLKFEQIYLSKPTHRERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 374 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 433
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 434 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 493
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 494 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 553
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 554 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 613
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 614 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 673
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 674 DLQEKEVAYCST 685
>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
Length = 1174
Score = 1187 bits (3070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/681 (82%), Positives = 615/681 (90%), Gaps = 27/681 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+PQIDLQAEAQHTS VET
Sbjct: 23 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHTSGTVET 82
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYL+KFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT++++G++P+
Sbjct: 83 PPRYLIKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTLIKEGDDPI 142
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
QK+F+GK+PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 143 EALSQKTFVGKVPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 202
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFS K+SKYAYKTEIRSCLEHSSRPTSTLW+NMMARGG ++K+AIGQRIIAIL
Sbjct: 203 ATNTVYVFSQKESKYAYKTEIRSCLEHSSRPTSTLWINMMARGGHGVRKNAIGQRIIAIL 262
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QEIP++IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 263 PYIRQEIPVIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 322
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGY+VHRLLLA+LGRR
Sbjct: 323 IGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYIVHRLLLAALGRR 382
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
E DDRDHY VR+++QKFID+GKDFNLELAI+T+ I
Sbjct: 383 ECDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLFSQKFIDQGKDFNLELAIRTRTI 442
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTF S+LSHLRR+NSP+GRDGKLA+PRQ
Sbjct: 443 TDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFVSTLSHLRRLNSPVGRDGKLARPRQ 502
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNT WGMICPAETPEG+ VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 503 LHNTQWGMICPAETPEGSCVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 562
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
I DATKIFVNGCWVGIHRDPEQLM TL+KLRRQMDIIVSEVS++RDI DREIRI+TDAGR
Sbjct: 563 IQDATKIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDISDREIRIYTDAGR 622
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW-Q 633
ICRPLLI EN LLLKKRHID LKER+YNNYGWQ LV SGVVEYIDTLEEET M++M
Sbjct: 623 ICRPLLIVENQKLLLKKRHIDLLKEREYNNYGWQDLVASGVVEYIDTLEEETIMLSMSPD 682
Query: 634 VLVQSGVVEYIDTLEEETTMI 654
L +SG E +MI
Sbjct: 683 QLQESGYCSSYTHCEIHPSMI 703
>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
Length = 1174
Score = 1186 bits (3069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/672 (84%), Positives = 609/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+Y GWQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYKTTGWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
Length = 1174
Score = 1186 bits (3067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/672 (84%), Positives = 610/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ GEE
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQ 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+MMARGGQ +KKSAIGQRI++ L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKERRIKYA+E+LQKE+LPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY +R+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGD KKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLK+RHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
Length = 1174
Score = 1185 bits (3065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/672 (83%), Positives = 612/672 (91%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVED 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT++++GE+ +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTS++WV+MMARGGQ +KKSAIGQRI++ L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMMARGGQGVKKSAIGQRIVSTL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKERRIKYA+E+LQKE+LPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY +R+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGD KKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLK+RHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
Length = 1174
Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/672 (84%), Positives = 610/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEA WIVI++YFDE+GLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 21 LWQEARWIVISSYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GE+ +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKGVAYCST 692
>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Apis mellifera]
Length = 1154
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/636 (89%), Positives = 595/636 (93%), Gaps = 5/636 (0%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFI+MSVQRIVEDSPQIDLQAEAQHTS E+E
Sbjct: 21 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTSGEIEN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GE+P+
Sbjct: 81 PVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEDPI 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS YCLL GL+DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTSTLW+NMMA+ G S+KKSAIGQRIIAI+
Sbjct: 201 ATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAII 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL-----LLA 355
IG RGARPGVTKE+RIKYAREILQKEMLPHVG+ DFCETKKAYFL ++ RL LLA
Sbjct: 321 IGTRGARPGVTKEKRIKYAREILQKEMLPHVGIRDFCETKKAYFLEFINKRLDLAGPLLA 380
Query: 356 SLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
R + VR+YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ
Sbjct: 381 FXFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 440
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAAVG
Sbjct: 441 ARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVG 500
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP+
Sbjct: 501 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPD 560
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHID 595
QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRI RPLLI E +LLLKKRHID
Sbjct: 561 QLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHID 620
Query: 596 NLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LKERDYNN GWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 621 MLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAM 656
>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
[Saccoglossus kowalevskii]
Length = 1175
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/672 (84%), Positives = 610/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEA HT+ EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEATHTTIEVEV 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P RY+LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V++G+EP
Sbjct: 81 PTRYILKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKEGDEPQ 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLEHSSRPTSTLWV+MMARGGQ ++KSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLEHSSRPTSTLWVHMMARGGQGVRKSAIGQRIVAAL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QEIPIMIVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEIPIMIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFID+GKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRHLFKNLMKEVRIYAQKFIDKGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGL+YSLATGNWG+QKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQ
Sbjct: 441 TDGLKYSLATGNWGEQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA SA
Sbjct: 501 LHNTLWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAASA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
I +ATKIFVNGCWVGIHRDPEQLM TL+KLRRQMDIIVSEVS++RDIR++EIRI+TDAGR
Sbjct: 561 INEATKIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDIREKEIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKK+HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKKHIDMLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q + Y T
Sbjct: 681 DLQEKGMGYCST 692
>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
Length = 1173
Score = 1174 bits (3036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/672 (83%), Positives = 609/672 (90%), Gaps = 27/672 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P I+LQAE+QHTSTEV
Sbjct: 21 MWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPIIELQAESQHTSTEVSV 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P +YLLKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKTVV+ +PV
Sbjct: 81 PTKYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTVVKHEAQPV 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF KDSKYA+ +EIRS LE+SSRPTS++WVNM+ARGGQ +KKSAIGQRI AI+
Sbjct: 201 ATNTVYVFKKKDSKYAFTSEIRSSLENSSRPTSSMWVNMLARGGQGVKKSAIGQRITAII 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QEIPI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL A+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGL+YSLATGNWGDQKKAHQARAGVSQVLNRLT+AS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 TDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHN+LWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+PSA
Sbjct: 501 LHNSLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPSA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IA+ATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS++RDIR+REIRI+TDAGR
Sbjct: 561 IANATKIFVNGCWVGIHRDPEQLMNTLRKLRRQMDIIVSEVSMVRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI EN LLLK RHID LKE DYN+Y WQ LV SGVVEYID LEEET M+AM+
Sbjct: 621 ICRPLLIVENQKLLLKTRHIDQLKE-DYNSYSWQDLVASGVVEYIDPLEEETIMLAMFPE 679
Query: 635 LVQSGVVEYIDT 646
+Q +Y T
Sbjct: 680 DLQDKGEQYCST 691
>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
Length = 1104
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/694 (81%), Positives = 608/694 (87%), Gaps = 48/694 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH + E E
Sbjct: 23 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLTMEAEV 82
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLL FEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAPLYVDITKT+V+ GEE +
Sbjct: 83 PPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPLYVDITKTIVKDGEERI 142
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 143 ETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 202
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATN+VYVF+ KDSKYA+ EIRSCLEHSSRPTSTLWV+M+ARGG +KSAIGQRI+A+L
Sbjct: 203 ATNSVYVFAKKDSKYAFTGEIRSCLEHSSRPTSTLWVHMLARGGTGQRKSAIGQRIVAVL 262
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QEIPI+IVFRALGFV+DRDILEHIIYDFDDPEMMEM+KPSLDEAFVIQEQNVALNF
Sbjct: 263 PYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMLKPSLDEAFVIQEQNVALNF 322
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGA+PGVTK++RIKYAREILQKEMLPHVG+SD+CETKKAYFLGY+VHRLLLA+LGRR
Sbjct: 323 IGARGAKPGVTKDKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYIVHRLLLAALGRR 382
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 383 ELDDRDHYGNKRLDLAGPLLAYLFRGLFKNLTKEVRIYAQKFIDRGKDFNLELAIKTRII 442
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 443 TDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 502
Query: 455 LHNTLWGMICPAETPE----------------------GAAVGLVKNLALMAYISVGSQP 492
LHN+LWGMICPAETPE G AVGLVKNLALMAYISVGSQP
Sbjct: 503 LHNSLWGMICPAETPEGQAVGLVKNLALMAYISMVHDNGQAVGLVKNLALMAYISVGSQP 562
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
SPILEFLEEWSMENLEE+APSAIA+ATKIFVNGCWVG+HRDPEQLM TL+KLRRQMDIIV
Sbjct: 563 SPILEFLEEWSMENLEEVAPSAIANATKIFVNGCWVGVHRDPEQLMNTLKKLRRQMDIIV 622
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQ 612
SEVS++RDIR+REIRI TDAGRICRPLLI E LLLKK H+D LKER+YNNY WQ LV
Sbjct: 623 SEVSMVRDIREREIRIFTDAGRICRPLLIVEKQKLLLKKHHVDMLKEREYNNYSWQDLVA 682
Query: 613 SGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
GVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 683 GGVVEYIDTLEEETVMLAMTPDDLQDKGVAYCST 716
>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Metaseiulus occidentalis]
Length = 1178
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/673 (83%), Positives = 604/673 (89%), Gaps = 27/673 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI+AYFDEKGLVRQQLDSFDEFIQMSVQ+IVED+P I+LQAEA H+S +E
Sbjct: 19 LWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQKIVEDTPPIELQAEATHSSGIIEQ 78
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P +Y +KFEQIYLSKPTHWEKDG+P+PMMPNEARLRNLTYSAPLYVDI KTV+R GE+PV
Sbjct: 79 PTKYQVKFEQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSAPLYVDIIKTVIRDGEDPV 138
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRS+YCLLNGL+DRDL+ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 139 ETQHQKTFIGKIPIMLRSSYCLLNGLSDRDLSELNECPLDPGGYFIINGSEKVLIAQEKM 198
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF MKD KYA+K E RSC+EHSSRPTSTLWVNMMARGG +KK++IGQRIIAIL
Sbjct: 199 ATNTVYVFQMKDGKYAFKAECRSCIEHSSRPTSTLWVNMMARGGSGVKKASIGQRIIAIL 258
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 259 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 318
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGARPGVTK RIKYAREILQKEMLPHVGVSDFCETKKAY+LGYMVHRLLLA+LGRR
Sbjct: 319 IGSRGARPGVTKANRIKYAREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRR 378
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRM+AQKFID+GKDFNLELAIKT+II
Sbjct: 379 ELDDRDHYGNKRLDLAGPLMAFLFRGLFKNLTKEVRMFAQKFIDKGKDFNLELAIKTRII 438
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGL+YSLATGNWGDQKKAHQAR GVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 439 TDGLKYSLATGNWGDQKKAHQARPGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQ 498
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEG AVGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 499 LHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSA 558
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IA+ATKIFVNGCWVGIHRDPEQLM TL+KLRRQMDIIVSEVS++RDIRDREIRI+TDAGR
Sbjct: 559 IAEATKIFVNGCWVGIHRDPEQLMLTLQKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGR 618
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW-Q 633
ICRPLLI EN LLLK+ HID LKER+ + Y WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 619 ICRPLLIVENQKLLLKRHHIDKLKERECSYYSWQDLVASGVVEYIDTLEEETVMLAMTPD 678
Query: 634 VLVQSGVVEYIDT 646
L Q + Y T
Sbjct: 679 DLTQDKALAYCST 691
>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
Length = 1173
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/658 (84%), Positives = 603/658 (91%), Gaps = 30/658 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVINAYFDEKGLVRQQLDS+DEFIQMSVQR+VEDSP I++ AEAQH + E+E
Sbjct: 22 VWQEACWIVINAYFDEKGLVRQQLDSYDEFIQMSVQRVVEDSPVIEIVAEAQHLAGEIEN 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWEKDG+PSP++PNEARLRNLTYSAPLYVDI+KT++R GE+P+
Sbjct: 82 PPRYLLKFEQIYLSKPTHWEKDGAPSPLVPNEARLRNLTYSAPLYVDISKTIIRDGEDPI 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
H K+FIGKIPIMLRSTYCLLNG+TDRDLTELNECP DPG YFIINGSEKVLIAQEKM
Sbjct: 142 YKPHTKTFIGKIPIMLRSTYCLLNGMTDRDLTELNECPFDPGAYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+MKD K+AYKTEIRSCLEHSSRPTSTLWVNM+ARGGQ K++++GQRIIAIL
Sbjct: 202 ATNTVYVFAMKDGKFAYKTEIRSCLEHSSRPTSTLWVNMLARGGQVGKRNSVGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIM+VFRALGFVADRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQN+ALNF
Sbjct: 262 PYIKQEIPIMVVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNIALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTKE+RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 322 IGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKF+DRGKDFN+ELA+KT+II
Sbjct: 382 ELDDRDHYGNKRLDLGGPLLSFLFRGMFKNLIKEVRLYAQKFVDRGKDFNIELAVKTRII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGLRYSLATGNW DQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 SDGLRYSLATGNWADQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS+
Sbjct: 502 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSS 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IAD+TKIFVNGCWVGIHRDPE LM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGR
Sbjct: 562 IADSTKIFVNGCWVGIHRDPELLMSTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAEN-GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ++ G LL+KK+ ID LK+RD YGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVDSEGRLLMKKKDIDLLKDRD---YGWQSLVSSGVVEYIDTLEEETIMIAM 676
>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
rotundus]
Length = 1144
Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 559/662 (84%), Positives = 601/662 (90%), Gaps = 26/662 (3%)
Query: 11 NAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQ 70
++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE PPRYLLKFEQ
Sbjct: 1 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQ 60
Query: 71 IYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIG 130
IYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE + TQHQK+FIG
Sbjct: 61 IYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIG 120
Query: 131 KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 190
KIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+
Sbjct: 121 KIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK 180
Query: 191 KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIM 250
KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LPYIKQE+PI+
Sbjct: 181 KDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPII 240
Query: 251 IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGV 310
IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFIG+RGA+PGV
Sbjct: 241 IVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGV 300
Query: 311 TKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-- 368
TKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDRDHY
Sbjct: 301 TKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGN 360
Query: 369 ------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLAT 404
VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLAT
Sbjct: 361 KRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLAT 420
Query: 405 GNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMIC 464
GNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+C
Sbjct: 421 GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVC 480
Query: 465 PAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVN 524
PAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVN
Sbjct: 481 PAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVN 540
Query: 525 GCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN 584
GCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI E
Sbjct: 541 GCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK 600
Query: 585 GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYI 644
LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y
Sbjct: 601 QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYC 660
Query: 645 DT 646
T
Sbjct: 661 ST 662
>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1217
Score = 1167 bits (3019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/665 (83%), Positives = 604/665 (90%), Gaps = 26/665 (3%)
Query: 8 IVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLK 67
+ ++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE PPRYLLK
Sbjct: 1 LFCSSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLK 60
Query: 68 FEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKS 127
FEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT++++GE+ + TQHQK+
Sbjct: 61 FEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQIQTQHQKT 120
Query: 128 FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 187
FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV
Sbjct: 121 FIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 180
Query: 188 FSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEI 247
F+ KDSKYAY +E RSCLE+SSRPTST+WV+MMARGGQ +KKSAIGQRI++ LPYI+QE+
Sbjct: 181 FAKKDSKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEV 240
Query: 248 PIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR 307
PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIG+RGA+
Sbjct: 241 PIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAK 300
Query: 308 PGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDH 367
PGVTKERRIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDRDH
Sbjct: 301 PGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 360
Query: 368 Y--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYS 401
Y +R+YAQKFIDRGKDFNLELAIKT+II+DGL+YS
Sbjct: 361 YGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYS 420
Query: 402 LATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWG 461
LATGNWGD KKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWG
Sbjct: 421 LATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWG 480
Query: 462 MICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKI 521
M+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKI
Sbjct: 481 MVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKI 540
Query: 522 FVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI 581
FVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI
Sbjct: 541 FVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLI 600
Query: 582 AENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVV 641
E LLLK+RHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V
Sbjct: 601 VEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV 660
Query: 642 EYIDT 646
Y T
Sbjct: 661 AYCST 665
>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 1149 bits (2971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/625 (89%), Positives = 577/625 (92%), Gaps = 26/625 (4%)
Query: 33 MSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNE 92
MSVQRIVEDSP I+LQAE QHTS EVETPPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNE
Sbjct: 1 MSVQRIVEDSPAIELQAERQHTSGEVETPPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNE 60
Query: 93 ARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLT 152
ARLRNLTYSAPLYVDITKT +G +PV TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLT
Sbjct: 61 ARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLT 120
Query: 153 ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPT 212
ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYA+KTEIRSCLEHSSRPT
Sbjct: 121 ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPT 180
Query: 213 STLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 272
STLWVNMMARG Q++KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF
Sbjct: 181 STLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 240
Query: 273 DDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVG 332
DDPEMMEMVKPSLDEAFV+QEQNVALNFIGARGARPGVTK++RIKYA+EILQKEMLPHVG
Sbjct: 241 DDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVG 300
Query: 333 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------------ 368
VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY
Sbjct: 301 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLM 360
Query: 369 --VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 426
VRMY QKFIDRGKDFNLELAIKT IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR
Sbjct: 361 KEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 420
Query: 427 LTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
LTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAAVGLVKNLALMAYI
Sbjct: 421 LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYI 480
Query: 487 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR 546
SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM TLRKLRR
Sbjct: 481 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRR 540
Query: 547 QMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG 606
QMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENGSLLLKK H++ LKERDYNNY
Sbjct: 541 QMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYS 600
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
WQVLV SGVVEY+ TLEEET MIAM
Sbjct: 601 WQVLVASGVVEYMYTLEEETVMIAM 625
>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
Length = 1182
Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/657 (82%), Positives = 587/657 (89%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP+IDLQAE+QH +++ E
Sbjct: 25 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPEIDLQAESQHMTSDTEI 84
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P R++LKFEQIYLSKPTHWEKDG+PSPMMPNEARLRNLTYSAP YVDITKT ++ EEP
Sbjct: 85 PARFVLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLTYSAPFYVDITKTRIKDNEEPQ 144
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
T H K FIGKIPIMLRSTYCLLNGL DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 145 VTTHSKMFIGKIPIMLRSTYCLLNGLLDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 204
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFS KDSKY+Y EIRSCLEHSSRPTST+WV+M+A+G ++SAIGQRI+ L
Sbjct: 205 ATNTVYVFSKKDSKYSYTAEIRSCLEHSSRPTSTMWVSMLAKGSSGGRRSAIGQRIVGSL 264
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+D EMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 265 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDQEMMEMVKPSLDEAFVIQEQNVALNF 324
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGARPGVTKERRIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 325 IGSRGARPGVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 384
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMYAQKFIDRGKDFN+ELA+K K+I
Sbjct: 385 ELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFIDRGKDFNIELALKPKVI 444
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQ
Sbjct: 445 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQ 504
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNT WGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEF+EEW+MENLEEI PSA
Sbjct: 505 LHNTHWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFMEEWTMENLEEITPSA 564
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
I +TKIFVNGCWVGIHRDP+QLM TLRKLRR+MDIIVSEVS++RD R+REIRI++DAGR
Sbjct: 565 INTSTKIFVNGCWVGIHRDPDQLMSTLRKLRRRMDIIVSEVSMVRDFREREIRIYSDAGR 624
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI EN LLLKK HID LKER+YN Y WQ LV +G+VEYID EEET M+AM
Sbjct: 625 ICRPLLIVENQKLLLKKNHIDQLKEREYNEYSWQELVANGIVEYIDVNEEETVMVAM 681
>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
Length = 1123
Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/625 (87%), Positives = 575/625 (92%), Gaps = 26/625 (4%)
Query: 33 MSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNE 92
MSVQRIVEDSPQIDLQAEAQHT+ E+E P R+LLKFEQIYLSKPTHWEKDG+PSPMMPNE
Sbjct: 1 MSVQRIVEDSPQIDLQAEAQHTTGEIENPVRHLLKFEQIYLSKPTHWEKDGAPSPMMPNE 60
Query: 93 ARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLT 152
ARLRNLTYSAPLYVDITKT+++ GEEP+ TQHQK+FIGKIPIMLRS YCLL GL+DRDLT
Sbjct: 61 ARLRNLTYSAPLYVDITKTIMKDGEEPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLT 120
Query: 153 ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPT 212
ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK EIRSCLEHSSRPT
Sbjct: 121 ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPT 180
Query: 213 STLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 272
STLW+NMMA+ G S+KKSAIGQRI+AI+PY+KQEIPIM+VFRALGFVADRDILEHIIYDF
Sbjct: 181 STLWINMMAKSGASIKKSAIGQRIVAIIPYVKQEIPIMVVFRALGFVADRDILEHIIYDF 240
Query: 273 DDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVG 332
DDPEMMEMVKPSLDEAFVIQEQNVALNFIG RGAR GVTKE+RIKYAREILQKEMLPHVG
Sbjct: 241 DDPEMMEMVKPSLDEAFVIQEQNVALNFIGTRGARAGVTKEKRIKYAREILQKEMLPHVG 300
Query: 333 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------------ 368
+SDFCETKKAYFLGYMVHRLL ASLGRRELDDRDHY
Sbjct: 301 ISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLM 360
Query: 369 --VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 426
VR+YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR
Sbjct: 361 KEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 420
Query: 427 LTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
LTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAAVGLVKNLALMAYI
Sbjct: 421 LTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYI 480
Query: 487 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR 546
SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP+QLM TLRKLRR
Sbjct: 481 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRR 540
Query: 547 QMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG 606
QMDIIVSEVS+IRDIRDREIRI+TDAGRI RPLLI E +LLLKKRHID LKERDYNN G
Sbjct: 541 QMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDG 600
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
WQ LV SGVVEYIDTLEEET MIAM
Sbjct: 601 WQELVGSGVVEYIDTLEEETVMIAM 625
>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
Length = 1104
Score = 1134 bits (2932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/644 (84%), Positives = 583/644 (90%), Gaps = 26/644 (4%)
Query: 29 EFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPM 88
EFIQMSVQRIVED+P IDLQAEAQH S EVE PPRYLLKFEQIYLSKPTHWE+DG+PSPM
Sbjct: 1 EFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPM 60
Query: 89 MPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTD 148
MPNEARLRNLTYSAPLYVDITKTV+++GEE + TQHQK+FIGKIPIMLRSTYCLLNGLTD
Sbjct: 61 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 120
Query: 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHS 208
RDL ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+ KDSKYAY E RSCLE+S
Sbjct: 121 RDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENS 180
Query: 209 SRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
SRPTST+WV+M+ARGGQ KKSAIGQRI+A LPYIKQE+PI+IVFRALGFV+DRDILEHI
Sbjct: 181 SRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHI 240
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
IYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFIG+RGA+PGVTKE+RIKYA+E+LQKEML
Sbjct: 241 IYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEML 300
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDRDHY
Sbjct: 301 PHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMF 360
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKKAHQARAGVSQ
Sbjct: 361 KNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQ 420
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLVKNLAL
Sbjct: 421 VLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLAL 480
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
MAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQLM TLR
Sbjct: 481 MAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLR 540
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY 602
KLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI E LLLKKRHID LKER+Y
Sbjct: 541 KLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY 600
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
NNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 601 NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 644
>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
Length = 1196
Score = 1103 bits (2852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/653 (79%), Positives = 580/653 (88%), Gaps = 13/653 (1%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACW+VINAYF+EKGLVRQQLDSFDEFIQMSVQRIVEDSPQID+Q E QH S+E +
Sbjct: 23 LWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDIQGETQHHSSEEQQ 82
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY LKF+QIYLSKPT WEKDGSP+PMM N+ARLRNLTYSAPLYVDITKT+ + EP
Sbjct: 83 SVRYQLKFDQIYLSKPTFWEKDGSPTPMMSNQARLRNLTYSAPLYVDITKTITKGNNEPE 142
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
H K+FIGKIPIMLRSTYCLL+ + D LTELNECPLD GGYFIINGSEKVLIAQEKM
Sbjct: 143 VKCHPKTFIGKIPIMLRSTYCLLHNMADHALTELNECPLDVGGYFIINGSEKVLIAQEKM 202
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
A+NTVYVF K+SKYAY EIRS E+SSRPTSTLWV+M+ARGG + KKS IGQ+I+A +
Sbjct: 203 ASNTVYVFQKKESKYAYVAEIRSVTENSSRPTSTLWVSMLARGGGTSKKSVIGQKIVAAI 262
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PY+ QEIPIM+VFRALGFVADRDILEHIIYDFDDPE+MEMVKPSLDEAFVIQEQNVALN+
Sbjct: 263 PYVNQEIPIMVVFRALGFVADRDILEHIIYDFDDPELMEMVKPSLDEAFVIQEQNVALNY 322
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RG+R GVTKE+RIKYAREILQKEMLPHVG+SD+CETKKAYFLGYMVHRLLL +LGRR
Sbjct: 323 IGSRGSRSGVTKEKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYMVHRLLLTALGRR 382
Query: 361 ELDDRDHY------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
E+DDRDHY V+MYAQKF+D G+DFNLELAIKTKIITDGLRYSLATGNWG
Sbjct: 383 EVDDRDHYGNKRLFRNLLKEVKMYAQKFVDNGRDFNLELAIKTKIITDGLRYSLATGNWG 442
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKAHQ+RAGVSQVLNRLTF S+LSHLRR+NSPIGRDGKLA+PRQLHNT WGMICPAET
Sbjct: 443 DQKKAHQSRAGVSQVLNRLTFVSTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICPAET 502
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE++ SA+A ATKIFVNGCWV
Sbjct: 503 PEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVSHSALASATKIFVNGCWV 562
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL 588
GIHRDPEQLM TLRKLRRQMD+IVSEVS++RDIRDREIRI+TDAGRICRPLLI EN L+
Sbjct: 563 GIHRDPEQLMSTLRKLRRQMDVIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLV 622
Query: 589 LKKRHIDNLKER-DYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
LKK HI+++K DY +GWQ L+ +G+VEY+DTLEEET MIAM + +GV
Sbjct: 623 LKKNHIESMKTADDYEVFGWQDLIANGIVEYVDTLEEETVMIAMTPDYLTAGV 675
>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
magnipapillata]
Length = 1184
Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/658 (81%), Positives = 582/658 (88%), Gaps = 27/658 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACW VI++YF+EKGLVRQQLDSFDEFIQMSVQRIVE+SP I+LQAE Q+T E+E
Sbjct: 25 LWQEACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVEESPPIELQAETQYTENEIEE 84
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P RY LKFEQIYLSKPTHWEKDG+P PMMPNEARLRNLTYSAPLYVDI+KT+ R G+EP
Sbjct: 85 PTRYQLKFEQIYLSKPTHWEKDGAPKPMMPNEARLRNLTYSAPLYVDISKTITRSGQEPE 144
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
T +H K +IGKIPIMLRSTYC+L+GL DRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 145 TEEHSKIYIGKIPIMLRSTYCVLSGLVDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 204
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA-IGQRIIAI 239
ATNTVYVF KDSKYAY EIRSCLE SSRPTST++++M+A+GG K + IGQRIIA
Sbjct: 205 ATNTVYVFHKKDSKYAYSCEIRSCLEQSSRPTSTMFISMLAKGGGGGAKKSAIGQRIIAT 264
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
+PYI+QEIPIMIVFRALGFV+DRDILEHIIYDF D EMMEMVKPSLDEAFV+QEQNVALN
Sbjct: 265 IPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFTDQEMMEMVKPSLDEAFVVQEQNVALN 324
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
FIG RGARPGVTKE+RIKYAREILQKEMLPHVG SDFCETKKAYFLGYMVHR+LLA+LGR
Sbjct: 325 FIGTRGARPGVTKEKRIKYAREILQKEMLPHVGTSDFCETKKAYFLGYMVHRILLAALGR 384
Query: 360 RELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKI 393
RELDDRDHY VR+YAQKFID+GKDF +ELAIKTK
Sbjct: 385 RELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDKGKDFKIELAIKTKT 444
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PR
Sbjct: 445 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPR 504
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLHNT WGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEW+MENLEEI+PS
Sbjct: 505 QLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWAMENLEEISPS 564
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
AI DATKIFVNGCWVGIHRDPEQL+ TLR+LRRQMDIIVSEVS++RDIRD+EIRI+TDAG
Sbjct: 565 AIKDATKIFVNGCWVGIHRDPEQLILTLRRLRRQMDIIVSEVSMVRDIRDKEIRIYTDAG 624
Query: 574 RICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
R+CRPLLI EN LLLKK H+D LKER+ NN+GWQ LV GVVEYID EEET MIAM
Sbjct: 625 RVCRPLLIVENQKLLLKKSHVDQLKEREMNNFGWQDLVSKGVVEYIDVNEEETAMIAM 682
>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
Length = 1173
Score = 1092 bits (2824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/671 (77%), Positives = 585/671 (87%), Gaps = 30/671 (4%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEFIQM+VQRIVEDSP ++LQ+E QH S ++E P
Sbjct: 25 WQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDIENP 84
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LK +QIYLSKPTHWEKDG+P+PMMPNEARLRNLTYS+PLYVDITKTV R GE+P
Sbjct: 85 TKFALKLDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYVDITKTVSRDGEDPKE 144
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
++++K F+GKIPIMLRS+YC+L+ ++DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA
Sbjct: 145 SKYEKVFVGKIPIMLRSSYCMLSNMSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 204
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVFSMKD KYAYKTE RSCLE+SSRPTSTLWVNMMARGG S KKSA+GQRIIAILP
Sbjct: 205 TNTVYVFSMKDGKYAYKTECRSCLENSSRPTSTLWVNMMARGG-STKKSAMGQRIIAILP 263
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQEIPIMIVFRALGFV+D DILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 264 YIKQEIPIMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 323
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
GARGA+PGVTKE+RIKYA+EILQKEMLPHVG+SDFCETKKAYF+GYMVHRLLLA+LGRRE
Sbjct: 324 GARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFIGYMVHRLLLAALGRRE 383
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDH VR+ AQK+I++ DF L+ +KT IT
Sbjct: 384 LDDRDHIGNKRLDLAGPLLAFLFRALFKNLLKEVRLTAQKYINKNGDFILDACVKTSTIT 443
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+GKLAKPRQL
Sbjct: 444 RGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQL 503
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMENLEE+APSAI
Sbjct: 504 HNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVAPSAI 563
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
ADATKIFVNG WVGIHRDPEQLM TL+KLRR+MDIIVSEVS++RDIRDREIRI+TDAGR+
Sbjct: 564 ADATKIFVNGAWVGIHRDPEQLMSTLKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRV 623
Query: 576 CRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVL 635
CRPLLI EN L+LKK+HID LK+ + +NY W LV GVVE ID +EEET M+AM
Sbjct: 624 CRPLLIVENQKLVLKKKHIDQLKDTN-DNYAWSDLVAGGVVELIDAMEEETVMLAMMPED 682
Query: 636 VQSGVVEYIDT 646
+++G Y DT
Sbjct: 683 LKAG--GYCDT 691
>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma
mansoni]
Length = 1158
Score = 1083 bits (2800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/670 (77%), Positives = 582/670 (86%), Gaps = 34/670 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVI++YFDEKGLVRQQLDSFDEFIQ S+Q+IVEDSP I+LQAEAQH+ +ET
Sbjct: 1 MWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILET 60
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---QGE 117
P +Y LKFEQIYLSK THWEKDGS PM PN+ARLRNLTY+APLYVD+ K ++R + E
Sbjct: 61 PVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDEIEEE 120
Query: 118 EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
+P+ +K FIGKIPIMLRSTYCLL+ ++DRDL ELNECPLDPGGYFIINGSEKVLIAQ
Sbjct: 121 KPL----EKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIAQ 176
Query: 178 EKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ-SLKKSAIGQRI 236
EKMATNTVYVF KDSKYAYKTEIRSCLEHSSRP STLW+NMMARGG+ K++ IGQRI
Sbjct: 177 EKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQRI 236
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
+AILPYIKQEIP++IVFRALGFVADRDILEHIIYDFDD EM EM+KPSLD+AFVIQEQ V
Sbjct: 237 VAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQKV 296
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
ALNFIG+RGARPGVTKE+RIKYA+EILQKE LPHVGVSDFCET+KAYFLGYMVHRLLLA+
Sbjct: 297 ALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAA 356
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
L RR++DDRDHY +R+YAQKFID+GKDFNLELAI+
Sbjct: 357 LKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELAIR 416
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
++IITDGL+YSLATGNWGDQKKA+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA
Sbjct: 417 SQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLA 476
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
+PRQLHNTLWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI
Sbjct: 477 RPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 536
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
APSAI KIFVNGCWVGIH P+ LMGTLRKLRRQ+D+IVSEVS+IRD RD+EIRI+T
Sbjct: 537 APSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 596
Query: 571 DAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
DAGRICRPL+I E G LLLK+ HI+ LK++ YN Y WQ LV SGVVEYIDTLEEET MIA
Sbjct: 597 DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 656
Query: 631 MWQVLVQSGV 640
M +Q+ V
Sbjct: 657 MGPAEMQAAV 666
>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1304
Score = 1083 bits (2800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/670 (77%), Positives = 582/670 (86%), Gaps = 34/670 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVI++YFDEKGLVRQQLDSFDEFIQ S+Q+IVEDSP I+LQAEAQH+ +ET
Sbjct: 147 MWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILET 206
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---QGE 117
P +Y LKFEQIYLSK THWEKDGS PM PN+ARLRNLTY+APLYVD+ K ++R + E
Sbjct: 207 PVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDEIEEE 266
Query: 118 EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
+P+ +K FIGKIPIMLRSTYCLL+ ++DRDL ELNECPLDPGGYFIINGSEKVLIAQ
Sbjct: 267 KPL----EKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIAQ 322
Query: 178 EKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ-SLKKSAIGQRI 236
EKMATNTVYVF KDSKYAYKTEIRSCLEHSSRP STLW+NMMARGG+ K++ IGQRI
Sbjct: 323 EKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQRI 382
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
+AILPYIKQEIP++IVFRALGFVADRDILEHIIYDFDD EM EM+KPSLD+AFVIQEQ V
Sbjct: 383 VAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQKV 442
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
ALNFIG+RGARPGVTKE+RIKYA+EILQKE LPHVGVSDFCET+KAYFLGYMVHRLLLA+
Sbjct: 443 ALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAA 502
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
L RR++DDRDHY +R+YAQKFID+GKDFNLELAI+
Sbjct: 503 LKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELAIR 562
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
++IITDGL+YSLATGNWGDQKKA+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA
Sbjct: 563 SQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLA 622
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
+PRQLHNTLWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI
Sbjct: 623 RPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 682
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
APSAI KIFVNGCWVGIH P+ LMGTLRKLRRQ+D+IVSEVS+IRD RD+EIRI+T
Sbjct: 683 APSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 742
Query: 571 DAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
DAGRICRPL+I E G LLLK+ HI+ LK++ YN Y WQ LV SGVVEYIDTLEEET MIA
Sbjct: 743 DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 802
Query: 631 MWQVLVQSGV 640
M +Q+ V
Sbjct: 803 MGPAEMQAAV 812
>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
Length = 1171
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/671 (76%), Positives = 581/671 (86%), Gaps = 31/671 (4%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEFIQM+VQRIVEDSP ++LQ+E QH S +VE P
Sbjct: 24 WQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVENP 83
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF+QIYLSKPTHWEKDG+P+PMMPNEARLRNLTYS+PLY+DITKT+ R GEEP
Sbjct: 84 IKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRIGEEPKE 143
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
T+++K F+GKIPIMLRS+YC+L ++DRDL+ELNECPLDPGGYF+INGSEKVLIAQEKMA
Sbjct: 144 TKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQEKMA 203
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVFSMKD KY YKTE RSCLE+SSRPTSTLWVNM+ RGG KKSA+G +IIAILP
Sbjct: 204 TNTVYVFSMKDGKYTYKTECRSCLENSSRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILP 263
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQEIP+MIVFRALGFV+D DILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 264 YIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 323
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
GARGA+PGVTKE+RIKYA+EILQKEMLPHVG+SDFCETKKAYFLGYMVHRLLLA+LGRRE
Sbjct: 324 GARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRE 383
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDH VR+ AQK+I++ DF L+L +KT +IT
Sbjct: 384 LDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNGDFMLDLCVKTPLIT 443
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+GKLAKPRQL
Sbjct: 444 RGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQL 503
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMENLEE+AP+AI
Sbjct: 504 HNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVAPTAI 563
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
ADATKIFVNG WVGIHRDPEQLM TL+KLRR+MDIIVSEVS++RDIRDREIRI+TDAGR+
Sbjct: 564 ADATKIFVNGAWVGIHRDPEQLMTTLKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRV 623
Query: 576 CRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVL 635
CRPLLI EN L LK++HID LK+ N+Y W LV GVVE ID +EEET M+AM
Sbjct: 624 CRPLLIVENQKLALKRKHIDQLKD---NSYTWSELVAGGVVELIDAMEEETVMLAMMPED 680
Query: 636 VQSGVVEYIDT 646
+++G Y DT
Sbjct: 681 LKAG--GYCDT 689
>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
Length = 1196
Score = 1080 bits (2793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/670 (77%), Positives = 581/670 (86%), Gaps = 34/670 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVI++YFDEKGLVRQQLDSFDEFIQ S+Q+IVEDSP I+LQAEAQH+ +E
Sbjct: 39 MWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHSGGILEN 98
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---QGE 117
P +Y LKFEQIYLSK THWEKDGS PM PN+ARLRNLTY+APLYVD+ K ++R + E
Sbjct: 99 PVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDETEEE 158
Query: 118 EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
+P+ +K FIGKIPIMLRSTYCLL+ ++DRDL ELNECPLDPGGYFIINGSEKVLIAQ
Sbjct: 159 KPL----EKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYFIINGSEKVLIAQ 214
Query: 178 EKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ-SLKKSAIGQRI 236
EKMATNTVYVF KDSKYAYKTEIRSCLEHSSRP STLW+NMMARGG+ K++ IGQRI
Sbjct: 215 EKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGKDGSKRATIGQRI 274
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
+AILPYIKQEIP++IVFRALGFVADRDILEHIIYDFDD EM EM+KPSLD+AFVIQEQ V
Sbjct: 275 VAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQKV 334
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
ALNFIG+RGARPGVTKE+RIKYA+EILQKE LPHVGVSDFCET+KAYFLGYMVHRLLLA+
Sbjct: 335 ALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAA 394
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
L RR++DDRDHY +R+YAQKFID+GKDFNLELAI+
Sbjct: 395 LKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELAIR 454
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
++IITDGL+YSLATGNWGDQKKA+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA
Sbjct: 455 SQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLA 514
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
+PRQLHNTLWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI
Sbjct: 515 RPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 574
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
APSAI KIFVNGCWVGIH P+ LMGTLRKLRRQ+D+IVSEVS+IRD RD+EIRI+T
Sbjct: 575 APSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 634
Query: 571 DAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
DAGRICRPL+I E G LLLK+ HI+ LK++ YN Y WQ LV SGVVEYIDTLEEET MIA
Sbjct: 635 DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 694
Query: 631 MWQVLVQSGV 640
M +Q+ V
Sbjct: 695 MGPAEMQAAV 704
>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
Length = 1099
Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/611 (84%), Positives = 554/611 (90%), Gaps = 26/611 (4%)
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
PRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 7 PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMA
Sbjct: 67 TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LP
Sbjct: 127 TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 186
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 187 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 246
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
G+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRE
Sbjct: 247 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 306
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II+
Sbjct: 307 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 366
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQL
Sbjct: 367 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 426
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AI
Sbjct: 427 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 486
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
ADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRI
Sbjct: 487 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 546
Query: 576 CRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVL 635
CRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 547 CRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDD 606
Query: 636 VQSGVVEYIDT 646
+Q V Y T
Sbjct: 607 LQEKEVAYCST 617
>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
queenslandica]
Length = 1175
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/657 (78%), Positives = 572/657 (87%), Gaps = 28/657 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P ++LQAEAQ+ ++ T
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPPLELQAEAQYDDSD--T 78
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PP+Y LKFEQIYLSKPTHWEKDG +MPNEARLRNLTYSAPLYVD+ KT++ + E+
Sbjct: 79 PPKYSLKFEQIYLSKPTHWEKDGKAVYLMPNEARLRNLTYSAPLYVDVKKTIIYEDEDSK 138
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
H K+FIGKIPIMLRSTYCLL+ LTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 139 EDPHPKTFIGKIPIMLRSTYCLLSQLTDRDLNELNECPLDPGGYFIINGSEKVLIAQEKM 198
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTV+VFS K+SKYA+ EIRS +E+SSRP STLWV+ ++RGG +KKSAIGQ+I+A L
Sbjct: 199 ATNTVHVFSKKESKYAHTAEIRSYIENSSRPVSTLWVSQLSRGGTGVKKSAIGQKIVATL 258
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFV+DRDILEHIIYDF D EMMEM+KPSLDEAFVIQEQNVALNF
Sbjct: 259 PYIKQEIPIMIVFRALGFVSDRDILEHIIYDFTDIEMMEMLKPSLDEAFVIQEQNVALNF 318
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RGA+PGVT+E+RIKYA++ILQKE+LPHVGVS FCET+KAYFLGYMVHRLL A+LGRR
Sbjct: 319 IGVRGAKPGVTREKRIKYAKDILQKELLPHVGVSSFCETRKAYFLGYMVHRLLQAALGRR 378
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFID+G+DFNLELAIKTK I
Sbjct: 379 ELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEVRLYAQKFIDKGRDFNLELAIKTKTI 438
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQ RAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQ
Sbjct: 439 TDGLRYSLATGNWGDQKKAHQTRAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQ 498
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNT WGMICPAETPEG AVGLVKNLALM YISVGSQP+PILEFLEEWSMENLEEI PS
Sbjct: 499 LHNTHWGMICPAETPEGHAVGLVKNLALMGYISVGSQPAPILEFLEEWSMENLEEITPSV 558
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IA++TKIFVNG WVGIHR+PE LM TLR+LRRQMDIIVSEVS++RDIR+REIRI TDAGR
Sbjct: 559 IANSTKIFVNGNWVGIHREPEHLMTTLRRLRRQMDIIVSEVSMVRDIREREIRIFTDAGR 618
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI EN LLLKK HI LKER+YNN WQ LV GVVEYID LEEET MIAM
Sbjct: 619 ICRPLLIVENQKLLLKKHHIQMLKEREYNNASWQDLVAGGVVEYIDCLEEETVMIAM 675
>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
[Canis lupus familiaris]
gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Felis catus]
Length = 1099
Score = 1078 bits (2789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/611 (84%), Positives = 554/611 (90%), Gaps = 26/611 (4%)
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
PRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 7 PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMA
Sbjct: 67 TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LP
Sbjct: 127 TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 186
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 187 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 246
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
G+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRE
Sbjct: 247 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 306
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II+
Sbjct: 307 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 366
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQL
Sbjct: 367 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 426
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AI
Sbjct: 427 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 486
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
ADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRI
Sbjct: 487 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 546
Query: 576 CRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVL 635
CRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 547 CRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDD 606
Query: 636 VQSGVVEYIDT 646
+Q V Y T
Sbjct: 607 LQEKEVAYCST 617
>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
[Pongo abelii]
gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Otolemur garnettii]
gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1099
Score = 1078 bits (2788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/611 (84%), Positives = 554/611 (90%), Gaps = 26/611 (4%)
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
PRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 7 PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMA
Sbjct: 67 TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LP
Sbjct: 127 TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 186
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 187 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 246
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
G+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRE
Sbjct: 247 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 306
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II+
Sbjct: 307 LDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIIS 366
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQL
Sbjct: 367 DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQL 426
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AI
Sbjct: 427 HNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAI 486
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
ADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRI
Sbjct: 487 ADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRI 546
Query: 576 CRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVL 635
CRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 547 CRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDD 606
Query: 636 VQSGVVEYIDT 646
+Q V Y T
Sbjct: 607 LQEKEVAYCST 617
>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia
malayi]
gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
[Brugia malayi]
Length = 1185
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/685 (75%), Positives = 581/685 (84%), Gaps = 45/685 (6%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEFIQM+VQRIVEDSP ++LQ+E QH S +VE P
Sbjct: 24 WQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVENP 83
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF+QIYLSKPTHWEKDG+P+PMMPNEARLRNLTYS+PLY+DITKT+ R GEEP
Sbjct: 84 IKFALKFDQIYLSKPTHWEKDGAPTPMMPNEARLRNLTYSSPLYIDITKTMTRSGEEPKE 143
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
T+++K F+GKIPIMLRS+YC+L ++DRDL+ELNECPLDPGGYF+INGSEKVLIAQEKMA
Sbjct: 144 TKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQEKMA 203
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHS--------------SRPTSTLWVNMMARGGQSL 227
TNTVYVFSMKD KY YKTE RSCLE+S +RPTSTLWVNM+ RGG
Sbjct: 204 TNTVYVFSMKDGKYTYKTECRSCLENSRQVLKQYFLSILEVTRPTSTLWVNMLPRGGGGS 263
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
KKSA+G +IIAILPYIKQEIP+MIVFRALGFV+D DILEHIIYDF+DPEMMEMVKPSLDE
Sbjct: 264 KKSAMGPKIIAILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDE 323
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQEQNVALNFIGARGA+PGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGY
Sbjct: 324 AFVIQEQNVALNFIGARGAKPGVTKEQRIKYAREILQKEMLPHVGISDFCETKKAYFLGY 383
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MVHRLLLA+LGRRELDDRDH VR+ AQK+I++
Sbjct: 384 MVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNG 443
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
DF L+L +KT +IT GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NS
Sbjct: 444 DFMLDLCVKTPLITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRCNS 503
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGR+GKLAKPRQLHNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEE
Sbjct: 504 PIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEE 563
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
WSMENLEE+AP+AIADATKIFVNG WVGIHRDPEQLM TL+KLRR+MDIIVSEVS++RDI
Sbjct: 564 WSMENLEEVAPTAIADATKIFVNGAWVGIHRDPEQLMTTLKKLRREMDIIVSEVSMVRDI 623
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
RDREIRI+TDAGR+CRPLLI EN L LK++HID LK+ N+Y W LV GVVE ID
Sbjct: 624 RDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKD---NSYTWSELVAGGVVELIDA 680
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDT 646
+EEET M+AM +++G Y DT
Sbjct: 681 MEEETVMLAMMPEDLKAG--GYCDT 703
>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Oryzias latipes]
Length = 1120
Score = 1066 bits (2757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/672 (77%), Positives = 564/672 (83%), Gaps = 80/672 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+LLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT++++GE+ +
Sbjct: 81 PPRFLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE SSRPTST+WV+MMARGGQ +KKSAIGQRI++ L
Sbjct: 201 ATNTVYVFAKKDSKYAYTAECRSCLEXSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKERRIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY +R+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGD KKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDI
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDI------------------------ 596
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
+++E+ LV SGVVEYIDTLEEET M+AM
Sbjct: 597 -----IVSED-------------------------LVASGVVEYIDTLEEETVMLAMTPD 626
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 627 DLQEKGVAYCST 638
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 635 LVQSGVVEYIDTLEEETTMIAMSP 658
LV SGVVEYIDTLEEET M+AM+P
Sbjct: 602 LVASGVVEYIDTLEEETVMLAMTP 625
>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Strongylocentrotus purpuratus]
Length = 1142
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/671 (77%), Positives = 563/671 (83%), Gaps = 60/671 (8%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP +DLQAEAQH +TE E P
Sbjct: 22 WQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVDLQAEAQHMTTEQEVP 81
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV++ GE+P
Sbjct: 82 TRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVIKDGEDPQE 141
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
T HQK+FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM+
Sbjct: 142 TIHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMS 201
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TN+VYVF+ KDSKYA+ E RSCLEHSSRPTSTLWV+MMA+GGQ +KSAIGQR+I++LP
Sbjct: 202 TNSVYVFAKKDSKYAFTAECRSCLEHSSRPTSTLWVHMMAKGGQGARKSAIGQRMISVLP 261
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YI+QE+PIM+VFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ+VALNFI
Sbjct: 262 YIRQEVPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQSVALNFI 321
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY VHRLLLAS+GRRE
Sbjct: 322 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYCVHRLLLASIGRRE 381
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
+DDRDHY VRMYAQKFID+GKDFN+ELAIKT+IIT
Sbjct: 382 VDDRDHYGNKRLDLAGPLLAFLFRALFKNLLKEVRMYAQKFIDKGKDFNMELAIKTRIIT 441
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
DGL+YSLATGNWGDQKKAHQARAGVSQV + L H
Sbjct: 442 DGLKYSLATGNWGDQKKAHQARAGVSQVRHILHSFIVYYH-------------------- 481
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
+G AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI
Sbjct: 482 --------------KGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 527
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
+ATKIFVNGCWVGIHRDPEQLM TL+KLRRQMDIIVSEVS++RDIR+REIRI TDAGRI
Sbjct: 528 NEATKIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDIREREIRIFTDAGRI 587
Query: 576 CRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVL 635
CRPLLI EN LLLKKRH+ LKER+YNNY WQ LV SGVVEYIDT+EEET M+AM
Sbjct: 588 CRPLLIVENQKLLLKKRHVSMLKEREYNNYSWQDLVASGVVEYIDTMEEETVMLAMTPDD 647
Query: 636 VQSGVVEYIDT 646
+Q + Y T
Sbjct: 648 LQEKGMGYCST 658
>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
Length = 1193
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/673 (75%), Positives = 575/673 (85%), Gaps = 31/673 (4%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEF+QM+VQRIVEDSP ++LQ+E QH T++E P
Sbjct: 29 WQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENP 88
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF QIYLSKPTHWEKDG+P PMMPNEARLRNLTY++PLYVDITK V R +
Sbjct: 89 AKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRD-DSATE 147
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
+ K F+GK+P+MLRS+YC+L+ +TDRDLTELNECPLDPGGYF+INGSEKVLIAQEKMA
Sbjct: 148 KVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMA 207
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVFSMKD KYA+KTE RSCLE+SSRPTST+WVNM+ARGG KK+A+GQRII ILP
Sbjct: 208 TNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILP 267
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQEIPIMIVFRALGFV+DRDIL HIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 268 YIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNFI 327
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
GARGA+PGVT+E+RIKYAREILQKE+LPHVGVS+ CETKKA+F+GYMVHRLLLA+LGRRE
Sbjct: 328 GARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRE 387
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDH +RM AQK+I++ DF L++ +KT IT
Sbjct: 388 LDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTIT 447
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+GKLAKPRQL
Sbjct: 448 RGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQL 507
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMENLEE++PSAI
Sbjct: 508 HNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAI 567
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
ADATKIFVNG WVGIHR+P+QLM TL+KLRRQMDIIVSEVS++RDIRDREIRI+TDAGR+
Sbjct: 568 ADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRV 627
Query: 576 CRPLLIAENGSLLLKKRHIDNLKER--DYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
CRPLLI EN L LKKRHID LKE + N Y W LV GVVE ID++EEET+MIAM
Sbjct: 628 CRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMP 687
Query: 634 VLVQSGVVEYIDT 646
++SG Y DT
Sbjct: 688 EDLRSG--GYCDT 698
>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
Length = 1207
Score = 1059 bits (2739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/681 (74%), Positives = 579/681 (85%), Gaps = 40/681 (5%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEF+QM+VQRIVEDSP ++LQ+E QH ++E P
Sbjct: 36 WQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGNDMENP 95
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF QIYLSKPTHWEKDG+P PMMPNEARLRNLTY++PLYVDITK V R ++ V
Sbjct: 96 AKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR--DDSVN 153
Query: 122 TQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
+ ++K F+GK+P+MLRS+YC+L+ +TDRDLTELNECPLDPGGYF+INGSEKVLIAQEKM
Sbjct: 154 EKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKM 213
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTE RSCLE+SSRPTST+WVNM+ARGG KK+A+GQRII IL
Sbjct: 214 ATNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGIL 273
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFV+DRDIL HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 274 PYIKQEIPIMIVFRALGFVSDRDILGHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 333
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGA+PGVT+E+RIKYAREILQKE+LPHVGVS+ CETKKA+F+GYMVHRLLLA+LGRR
Sbjct: 334 IGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRR 393
Query: 361 ELDDRDHY----------------------------------VRMYAQKFIDRGKDFNLE 386
ELDDRDH +RM AQK+I++ DF L+
Sbjct: 394 ELDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEKMITSCIQMRMTAQKYINKNDDFALD 453
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
+ +KT IT GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+
Sbjct: 454 VCVKTSTITRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGRE 513
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GKLAKPRQLHNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMEN
Sbjct: 514 GKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMEN 573
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
LEE++PSAIADATKIFVNG WVGIHR+P+QLM TL+KLRRQMDIIVSEVS++RDIRDREI
Sbjct: 574 LEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREI 633
Query: 567 RIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEYIDTLEEE 625
RI+TDAGR+CRPLLI E+ L L+KRHID LK+ D N Y W LV GVVE ID++EEE
Sbjct: 634 RIYTDAGRVCRPLLIVEDQKLALRKRHIDQLKDIDEANKYTWSDLVGGGVVELIDSMEEE 693
Query: 626 TTMIAMWQVLVQSGVVEYIDT 646
T+MIAM ++SGV Y DT
Sbjct: 694 TSMIAMMPEDLRSGV--YCDT 712
>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
Length = 1190
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/671 (74%), Positives = 577/671 (85%), Gaps = 27/671 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACW+VI+AYFDEKGLVRQQLDSFDEFIQMSVQ++VEDSP +++Q E ET
Sbjct: 43 MWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMSVQKLVEDSPPVEIQLEDHGAQGLSET 102
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
++ +KFEQIYLSKPTHWEKDG+P+P+MPNEARLRNLTYSAPLYVDITKT+ + EEP+
Sbjct: 103 --KFSIKFEQIYLSKPTHWEKDGAPAPLMPNEARLRNLTYSAPLYVDITKTIAKSNEEPL 160
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
+++K FIGKIPIMLRSTYCLLN L++RDLT+LNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 161 IAKYEKVFIGKIPIMLRSTYCLLNRLSERDLTDLNECPLDPGGYFIINGSEKVLIAQEKM 220
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG----QSLKKSAIGQRI 236
ATNTVYVFS+KD+K+A+K E RSCLE SSRPTSTLWVNM ARGG + KK +GQRI
Sbjct: 221 ATNTVYVFSLKDNKFAFKAECRSCLESSSRPTSTLWVNMYARGGGHGAANTKKQLMGQRI 280
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
+ LPY+KQE+P+++VFRALGFV+DRDILEHI+YDFDD EMMEMVKPSLDEAFVIQEQ+V
Sbjct: 281 VVNLPYVKQELPVIVVFRALGFVSDRDILEHIVYDFDDAEMMEMVKPSLDEAFVIQEQSV 340
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
ALNFIG+RG +PG+T+E+R+KYAREILQKE LPHVG+SDFCETKKAYFLGYMVHRLLLA+
Sbjct: 341 ALNFIGSRGVQPGITREKRVKYAREILQKETLPHVGISDFCETKKAYFLGYMVHRLLLAA 400
Query: 357 LGRRELDDRDHY--------------------VRMYAQKFIDRGKDFNLELAIKTKIITD 396
+GRRELDDRDHY V+M AQ++I++ DFNLEL ++T I+T
Sbjct: 401 MGRRELDDRDHYGNKRLDLAGPLGLFKNLLKEVKMVAQRYINKTGDFNLELCVRTGILTK 460
Query: 397 GLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLH 456
GL+YSLATGNWGDQKKAHQ RAGVSQVLNRLT+A++LSHLRR+NSPIGR+GKLAKPRQLH
Sbjct: 461 GLQYSLATGNWGDQKKAHQTRAGVSQVLNRLTYAATLSHLRRLNSPIGREGKLAKPRQLH 520
Query: 457 NTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA 516
NTLWGMICPAETPEG AVGLVKNLALMAYISVGSQ PILEFLEEWSME LEE+APSAI+
Sbjct: 521 NTLWGMICPAETPEGQAVGLVKNLALMAYISVGSQQEPILEFLEEWSMETLEEVAPSAIS 580
Query: 517 DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRIC 576
TKIFVNG WVGIHR+P+QLM TLRKLRRQMDI+VSEVS++RDIRDREIRI+TDAGRIC
Sbjct: 581 ATTKIFVNGAWVGIHREPQQLMATLRKLRRQMDIVVSEVSMVRDIRDREIRIYTDAGRIC 640
Query: 577 RPLLIAENGSLLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVL 635
RPLLI E+ LLLKK HI+NLK R+ N +GW LV + +VEYIDT+EEET M+AM
Sbjct: 641 RPLLIVEDQRLLLKKNHIENLKRRNESNGHGWSELVANSIVEYIDTMEEETIMLAMTPDD 700
Query: 636 VQSGVVEYIDT 646
+Q V Y DT
Sbjct: 701 LQDRGVGYCDT 711
>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
Length = 1195
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/672 (74%), Positives = 575/672 (85%), Gaps = 30/672 (4%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEF+QM+VQRIVEDSP ++LQ+E QH ++E P
Sbjct: 28 WQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGNDMENP 87
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF QIYLSKPTHWEKDG+P PMMPNEARLRNLTY++PLYVDITK V R + V
Sbjct: 88 AKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRD-DSVVE 146
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
++K F+GK+P+MLRS+YC+L+ +TDRDLTELNECPLDPGGYF+INGSEKVLIAQEKMA
Sbjct: 147 KVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMA 206
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVFSMKD KYA+KTE RSCLE+SSRPTST+WVNM+ARGG KK+A+GQRII ILP
Sbjct: 207 TNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILP 266
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQEIPIMIVFRALGFV+DRDIL HIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 267 YIKQEIPIMIVFRALGFVSDRDILGHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 326
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
GARGA+PGVT+E+RIKYAREILQKE+LPHVGVS+ CETKKA+F+GYMVHRLLLA+LGRRE
Sbjct: 327 GARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRE 386
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDH +RM AQK+I++ DF L++ +KT IT
Sbjct: 387 LDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTIT 446
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+GKLAKPRQL
Sbjct: 447 RGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQL 506
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMENLEE++PS+I
Sbjct: 507 HNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSSI 566
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
+DATKIFVNG WVGIHR+P+QLM TL+KLRRQMDIIVSEVS++RDIRDREIRI+TDAGR+
Sbjct: 567 SDATKIFVNGSWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRV 626
Query: 576 CRPLLIAENGSLLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
CRPLLI E+ L LKK HID LK+ D N + W LV GVVE ID++EEET+MIAM
Sbjct: 627 CRPLLIVEDQKLALKKTHIDQLKDVDEANKFSWSDLVGGGVVELIDSMEEETSMIAMMPE 686
Query: 635 LVQSGVVEYIDT 646
+++G Y DT
Sbjct: 687 DLRTG--GYCDT 696
>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
Length = 1194
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/673 (75%), Positives = 576/673 (85%), Gaps = 32/673 (4%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEF+QM+VQRIVEDSP ++LQ+E QH ++E P
Sbjct: 30 WQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGNDMENP 89
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF QIYLSKPTHWEKDG+P PMMPNEARLRNLTY++PLYVDITK V R +E V
Sbjct: 90 AKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTR--DESVN 147
Query: 122 TQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
+ ++K F+GK+P+MLRS+YC+L+ +TDRDLTELNECPLDPGGYF+INGSEKVLIAQEKM
Sbjct: 148 EKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKM 207
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTE RSCLE+SSRPTST+WVNM+ARGG KK+A+GQRII IL
Sbjct: 208 ATNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGIL 267
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFV+DRDIL HIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 268 PYIKQEIPIMIVFRALGFVSDRDILGHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 327
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGA+PGVT+E+RIKYAREILQKE+LPHVGVS+ CETKKA+F+GYMVHRLLLA+LGRR
Sbjct: 328 IGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRR 387
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDH +RM AQK+I++ DF L++ +KT I
Sbjct: 388 ELDDRDHIGNKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTI 447
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
T GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+GKLAKPRQ
Sbjct: 448 TRGLAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQ 507
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMENLEE++PSA
Sbjct: 508 LHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSA 567
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNG WVGIHR+PE LM TL+KLRRQMDIIVSEVS++RDIRDREIRI+TDAGR
Sbjct: 568 IADATKIFVNGAWVGIHREPELLMDTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGR 627
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
+CRPLLI E L L+KRHID LK+ D Y W LV +GVVE ID++EEET+MIAM
Sbjct: 628 VCRPLLIVEKQKLALRKRHIDLLKDVDETKKYTWSDLVGNGVVELIDSMEEETSMIAMMP 687
Query: 634 VLVQSGVVEYIDT 646
++SG Y DT
Sbjct: 688 EDLRSG--GYCDT 698
>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
Length = 1921
Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/670 (75%), Positives = 566/670 (84%), Gaps = 53/670 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+WQEACWIVI++YFDEKGLVRQQLDSFDEFIQ S+Q+IVEDSP I+LQAEAQHTS +ET
Sbjct: 783 MWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHTSGVLET 842
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---QGE 117
P +Y LKFEQIYLSK THWEKDGS PM PN+ARLRNLTY+APLYVD+ K ++R + E
Sbjct: 843 PVQYRLKFEQIYLSKATHWEKDGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDDGEEE 902
Query: 118 EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
+P+ +K FIGKIPIMLRSTYCLL+ ++DRDL ELNECPLDPGGYFIINGSEKVLIAQ
Sbjct: 903 KPL----EKKFIGKIPIMLRSTYCLLSIMSDRDLAELNECPLDPGGYFIINGSEKVLIAQ 958
Query: 178 EKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ-SLKKSAIGQRI 236
EKMATNTV LEHSSRP STLW+NMMARGG+ K++ IGQRI
Sbjct: 959 EKMATNTV-------------------LEHSSRPASTLWINMMARGGKDGSKRATIGQRI 999
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
+AILPYIKQEIP++IVFRALGFVADRDILEHIIYDFDD EM EM+KPSLD+AFVIQEQ V
Sbjct: 1000 VAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQKV 1059
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
ALNFIG+RGARPGVTKE+RIKYA+EILQKE LPHVGVSDFCET+KAYFLGYMVHRLLLA+
Sbjct: 1060 ALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAA 1119
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
L RR++DDRDHY +R+YAQKFID+GKDFNLELAI+
Sbjct: 1120 LKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELAIR 1179
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
++IITDGL+YSLATGNWGDQKKA+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA
Sbjct: 1180 SQIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLA 1239
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
+PRQLHNTLWGMICPAETPEG+AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI
Sbjct: 1240 RPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 1299
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
APSAI KIFVNGCWVGIH P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRI+T
Sbjct: 1300 APSAIGKTCKIFVNGCWVGIHNSPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYT 1359
Query: 571 DAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
DAGRICRPL+I E G LLLK+ HI+ LK++ YN Y WQ LV SGVVEYIDTLEEET MIA
Sbjct: 1360 DAGRICRPLVIVEKGKLLLKRSHIEFLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 1419
Query: 631 MWQVLVQSGV 640
M +Q+ V
Sbjct: 1420 MGPAEMQAAV 1429
>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
Length = 1187
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/658 (73%), Positives = 559/658 (84%), Gaps = 28/658 (4%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
W E+CW +I AYFDEKGLVRQQL+SFDEFI MSVQRIVE+SP I+LQ+E + + E E P
Sbjct: 21 WHESCWTIITAYFDEKGLVRQQLESFDEFITMSVQRIVEESPVIELQSEPNYNAGEPEEP 80
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE-EPV 120
+Y +KFEQIYLSKPTHWE P+P+MPNEARLRNLTY APLYVDI +T +R + P
Sbjct: 81 TKYQIKFEQIYLSKPTHWEVGTGPNPLMPNEARLRNLTYCAPLYVDINRTTIRSDDPRPH 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
+H+K FIG+IPIMLRS YCLL+GL+DRDLTELNECPLDPGGYF+INGSEKV+IAQEKM
Sbjct: 141 EEKHEKIFIGQIPIMLRSEYCLLSGLSDRDLTELNECPLDPGGYFVINGSEKVVIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR-GGQSLKKSAIGQRIIAI 239
A NTVYVF KDSKY E RSCLE+SSRPTST+W+N++AR GG +KKSAIG+RI AI
Sbjct: 201 ANNTVYVFEKKDSKYELTAECRSCLENSSRPTSTIWINLLARSGGTGVKKSAIGRRIAAI 260
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
LPY+KQ+ PI+IVFRALGFV+DRDILEHI+YDFDDP+MMEMVKPS+DEAFVIQE+ VAL+
Sbjct: 261 LPYVKQDTPIIIVFRALGFVSDRDILEHIVYDFDDPDMMEMVKPSIDEAFVIQEEAVALD 320
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
FIG RGARPGVT+E+R+KYA+EILQKE+LPHVG+S++CETKKAYFLGYMV+R+L A LGR
Sbjct: 321 FIGKRGARPGVTREKRMKYAKEILQKELLPHVGISEYCETKKAYFLGYMVNRILQAGLGR 380
Query: 360 RELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKI 393
R DDRDHY R+ AQK I++GK N+ AIKTKI
Sbjct: 381 RGEDDRDHYGNKRMDLAGPLLAFLFRSLFKKLTKDARIAAQKEIEKGKPMNVLTAIKTKI 440
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
ITDGL+YSLATGNWGDQ+KA Q R GVSQVLNRLT+ASSLSHLRR+NSP+GRDGKLAKPR
Sbjct: 441 ITDGLKYSLATGNWGDQQKASQCRPGVSQVLNRLTYASSLSHLRRLNSPVGRDGKLAKPR 500
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLH+T WGM+CPAETPEG AVGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEI P+
Sbjct: 501 QLHSTQWGMVCPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEITPN 560
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
+I+DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS++RDIR+REIRI+TDAG
Sbjct: 561 SISDATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSMVRDIRNREIRIYTDAG 620
Query: 574 RICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
RICRPLLI E+ LLLKK H+ LK+ +Y+NY W L+++GVVEYIDTLEEET M AM
Sbjct: 621 RICRPLLIVEDQRLLLKKDHLAMLKDPEYSNYSWTELIKAGVVEYIDTLEEETIMCAM 678
>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
Length = 1083
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/589 (82%), Positives = 525/589 (89%), Gaps = 26/589 (4%)
Query: 84 SPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLL 143
SP ARLRNLTYSAPLYVDITKTV+++GEE + TQHQK+FIGKIPIMLRSTYCLL
Sbjct: 13 SPRICGKKHARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLL 72
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRS 203
NGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+ KDSKYAY E RS
Sbjct: 73 NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 132
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
CLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LPYIKQE+PI+IVFRALGFV+DRD
Sbjct: 133 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 192
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREIL 323
ILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFIG+RGA+PGVTKE+RIKYA+E+L
Sbjct: 193 ILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVL 252
Query: 324 QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------- 368
QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDRDHY
Sbjct: 253 QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFL 312
Query: 369 -----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 417
VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKKAHQAR
Sbjct: 313 FRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQAR 372
Query: 418 AGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 477
AGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLV
Sbjct: 373 AGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLV 432
Query: 478 KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 537
KNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQL
Sbjct: 433 KNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQL 492
Query: 538 MGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL 597
M TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI E LLLKKRHID L
Sbjct: 493 MNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQL 552
Query: 598 KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
KER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 553 KEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 601
>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Papio anubis]
Length = 1083
Score = 1013 bits (2620), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/589 (82%), Positives = 525/589 (89%), Gaps = 26/589 (4%)
Query: 84 SPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLL 143
SP ARLRNLTYSAPLYVDITKTV+++GEE + TQHQK+FIGKIPIMLRSTYCLL
Sbjct: 13 SPRICGKKHARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLL 72
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRS 203
NGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+ KDSKYAY E RS
Sbjct: 73 NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 132
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
CLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LPYIKQE+PI+IVFRALGFV+DRD
Sbjct: 133 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 192
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREIL 323
ILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFIG+RGA+PGVTKE+RIKYA+E+L
Sbjct: 193 ILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVL 252
Query: 324 QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------- 368
QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDRDHY
Sbjct: 253 QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFL 312
Query: 369 -----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 417
VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKKAHQAR
Sbjct: 313 FRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQAR 372
Query: 418 AGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 477
AGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLV
Sbjct: 373 AGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLV 432
Query: 478 KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 537
KNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQL
Sbjct: 433 KNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQL 492
Query: 538 MGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL 597
M TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI E LLLKKRHID L
Sbjct: 493 MNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQL 552
Query: 598 KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
KER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 553 KEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 601
>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
gorilla gorilla]
Length = 1097
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/636 (77%), Positives = 535/636 (84%), Gaps = 38/636 (5%)
Query: 11 NAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQ 70
++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE PPRYLLKFEQ
Sbjct: 18 SSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFEQ 77
Query: 71 IYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIG 130
IYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE + TQHQK+FIG
Sbjct: 78 IYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIG 137
Query: 131 KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 190
KIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+
Sbjct: 138 KIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAK 197
Query: 191 KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIM 250
KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LPYIKQE+PI+
Sbjct: 198 KDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPII 257
Query: 251 IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGV 310
IVFRALGFV+DRDILEHIIYDF+DPEMMEMV + + L +G
Sbjct: 258 IVFRALGFVSDRDILEHIIYDFEDPEMMEMV--------IYMVHRLLLAALG-------- 301
Query: 311 TKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVR 370
RE+ ++ H G K+ G LLA L R + VR
Sbjct: 302 --------RRELDDRD---HYG------NKRLDLAG-----PLLAFLFRGMFKNLLKEVR 339
Query: 371 MYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFA 430
+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFA
Sbjct: 340 IYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFA 399
Query: 431 SSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGS 490
S+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGS
Sbjct: 400 STLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGS 459
Query: 491 QPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDI 550
QPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDI
Sbjct: 460 QPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDI 519
Query: 551 IVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVL 610
IVSEVS+IRDIR+REIRI+TDAGRICRPLLI E LLLKKRHID LKER+YNNY WQ L
Sbjct: 520 IVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDL 579
Query: 611 VQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
V SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 580 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 615
>gi|49619043|gb|AAT68106.1| RNA polymerase II subunit B [Danio rerio]
Length = 562
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/542 (85%), Positives = 500/542 (92%), Gaps = 26/542 (4%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ GEE
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQ 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+MMARGGQ +KKSAIGQRI++ L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKERRIKYA+E+LQKE+LPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY +R+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGD KKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IA 516
IA
Sbjct: 561 IA 562
>gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subunit, partial [Artemia salina]
Length = 862
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/484 (86%), Positives = 443/484 (91%), Gaps = 26/484 (5%)
Query: 174 LIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
LIAQEKMATNTVYVF++KDSKY YKTEIRSC+E+SSRP STL+VNMMA+GGQ+LKKSAIG
Sbjct: 1 LIAQEKMATNTVYVFALKDSKYCYKTEIRSCIENSSRPVSTLYVNMMAKGGQNLKKSAIG 60
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
QRIIAI+PYIKQEIPIMIVFRALGFVADRDILEHIIY+FDDPEMMEMVKPSLDEAFVIQE
Sbjct: 61 QRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYEFDDPEMMEMVKPSLDEAFVIQE 120
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
QNVALNFIGARGARPGVTK++RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLL
Sbjct: 121 QNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLL 180
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA+LGRRELDDRDHY VRMYAQKFIDRGKDFN+EL
Sbjct: 181 LAALGRRELDDRDHYGNKRLDLAGPLMSLLFRGLFKTLTKEVRMYAQKFIDRGKDFNIEL 240
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIK K ITDGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDG
Sbjct: 241 AIKPKFITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG 300
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL
Sbjct: 301 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 360
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEIAPSAIADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS++RDI+DREIR
Sbjct: 361 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIIVSEVSMVRDIQDREIR 420
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
I+TDAGRICRPLLI EN LLLKK HI+ LKE++YNN+ W LV SGVVEY+DTLEEET
Sbjct: 421 IYTDAGRICRPLLIVENQRLLLKKTHIEQLKEKEYNNFVWNDLVASGVVEYVDTLEEETA 480
Query: 628 MIAM 631
MIAM
Sbjct: 481 MIAM 484
>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
partial [Takifugu rubripes]
Length = 982
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/500 (82%), Positives = 447/500 (89%), Gaps = 26/500 (5%)
Query: 173 VLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
VLIAQEKMATNTVYVF+ KDSKYAY +E RSCLE+SSRPTST+WV+MMARGGQ +KKSAI
Sbjct: 1 VLIAQEKMATNTVYVFAKKDSKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAI 60
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
GQRI++ LPYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ
Sbjct: 61 GQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 120
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
EQNVALNFIG+RGA+PGVTKERRIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRL
Sbjct: 121 EQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRL 180
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
LLA+LGRRELDDRDHY +R+YAQKFIDRGKDFNLE
Sbjct: 181 LLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLE 240
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
LAIKT+II+DGL+YSLATGNWGD KKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRD
Sbjct: 241 LAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 300
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GKLAKPRQLHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN
Sbjct: 301 GKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 360
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
LEEI+P+AIADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REI
Sbjct: 361 LEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREI 420
Query: 567 RIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEET 626
RI+TDAGRICRPLLI E LLLK+RHID LKER+YNNY WQ LV SGVVEYIDTLEEET
Sbjct: 421 RIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEET 480
Query: 627 TMIAMWQVLVQSGVVEYIDT 646
M+AM +Q V Y T
Sbjct: 481 VMLAMTPDDLQEKGVAYCST 500
>gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit, partial [Crassostrea
gigas]
Length = 859
Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/499 (83%), Positives = 443/499 (88%), Gaps = 26/499 (5%)
Query: 174 LIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
LIAQEKMATNTVYVF KDSKYA+KTEIRSCLEHSSRPTSTLWVNMMARGG KKSAIG
Sbjct: 1 LIAQEKMATNTVYVFQQKDSKYAFKTEIRSCLEHSSRPTSTLWVNMMARGGGGAKKSAIG 60
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
QRII ILPYIKQEIPI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE
Sbjct: 61 QRIIGILPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 120
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
QNVALNFIG+RGARPGVTKE+RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL
Sbjct: 121 QNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 180
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA++GRRE+DDRDHY VR+YAQKFIDRGKDFNLEL
Sbjct: 181 LAAIGRREVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFIDRGKDFNLEL 240
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIKT+IITDGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDG
Sbjct: 241 AIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG 300
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLA+PRQLHNT WGMICPAETPEG+AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL
Sbjct: 301 KLARPRQLHNTQWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 360
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EE++PSAI DATKIFVNGCWVGIHRDPEQLM TLRKLRR+MDIIVSEVS+IRDIRDREIR
Sbjct: 361 EEVSPSAIQDATKIFVNGCWVGIHRDPEQLMNTLRKLRREMDIIVSEVSMIRDIRDREIR 420
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
I+TDAGRICRPLLI EN LLLK+ HI LK+R+YNNY WQ LV SGVVEYID LEEE+
Sbjct: 421 IYTDAGRICRPLLIVENQKLLLKQSHIKQLKQREYNNYSWQDLVASGVVEYIDPLEEESI 480
Query: 628 MIAMWQVLVQSGVVEYIDT 646
M+AM + V+Y T
Sbjct: 481 MLAMTPDDLSDKDVQYCST 499
>gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit, partial [Helobdella
stagnalis]
Length = 859
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/484 (82%), Positives = 435/484 (89%), Gaps = 26/484 (5%)
Query: 174 LIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
LIAQEKMATNTVYVFS KDSKYAYKTE+RSCLEHSSRP+ T+WVNMMAR G KK IG
Sbjct: 1 LIAQEKMATNTVYVFSQKDSKYAYKTELRSCLEHSSRPSGTMWVNMMARSGTGAKKVGIG 60
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
QRI+A+LPYIKQEIPI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPS+DEAF +Q+
Sbjct: 61 QRIVAVLPYIKQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSIDEAFCVQD 120
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VALNFIG RG+RPGVT+E+RIKYA+EILQKEMLPHVG+SDFCET+KAYFLGYMVHRLL
Sbjct: 121 QPVALNFIGGRGSRPGVTREKRIKYAKEILQKEMLPHVGISDFCETRKAYFLGYMVHRLL 180
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA+LGRRE+DDRDHY +R+YAQKFIDRGKDFNLEL
Sbjct: 181 LAALGRREVDDRDHYGNKRLDLAGPLLAYLFRGLFRNLSKEIRLYAQKFIDRGKDFNLEL 240
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIKT+ ITDGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDG
Sbjct: 241 AIKTRTITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG 300
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLA+PRQLHNTLWGMICPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL
Sbjct: 301 KLARPRQLHNTLWGMICPAETPEGCAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 360
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+PSAI DAT+IFVNGCWVGIHRDPEQLM TL+KLRRQMDIIVSEVS+IRDIRDREIR
Sbjct: 361 EEISPSAIMDATRIFVNGCWVGIHRDPEQLMNTLKKLRRQMDIIVSEVSVIRDIRDREIR 420
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
I+TDAGRICRPLLI EN LLLKKRHID LKER+YNNY WQ LV +GVVEYIDT+EEET
Sbjct: 421 IYTDAGRICRPLLIVENQKLLLKKRHIDLLKEREYNNYSWQDLVANGVVEYIDTMEEETV 480
Query: 628 MIAM 631
M+AM
Sbjct: 481 MLAM 484
>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1196
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/663 (62%), Positives = 501/663 (75%), Gaps = 46/663 (6%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT-STEVETPPRYL 65
W VI+AYF+EKGLVRQQLDSFD FIQ ++Q +V++SP + LQ E+QH +T RY+
Sbjct: 47 WTVISAYFEEKGLVRQQLDSFDAFIQNTMQELVDESPDLILQPESQHKPGAGPQTQTRYI 106
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ-GEEPVTTQH 124
+ F QIYLS+PT E DGS M+PNEARLRNLTYSAPL+VD++KT + GEE T Q
Sbjct: 107 INFGQIYLSRPTMTEADGSTQAMLPNEARLRNLTYSAPLFVDMSKTTITAAGEEGETHQS 166
Query: 125 ----QKSFIGKIPIMLRSTYCLLNGL-TDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+ FIGK+PIMLRS YC+L G +D+DLTEL ECP D GGYF+INGSEKVLIAQEK
Sbjct: 167 TEELSRVFIGKVPIMLRSNYCMLAGAPSDKDLTELGECPYDQGGYFVINGSEKVLIAQEK 226
Query: 180 MATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
M+ N VYVF + SKYAY EIRSCLE SRPTST++V MM R G GQ + A
Sbjct: 227 MSHNHVYVFKKQAPSKYAYVAEIRSCLETGSRPTSTMYVKMMQRSGSK------GQTLKA 280
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PYI+Q+IPI+IVFRALGFVADR+ILE I+YDFD+ +MMEM++PSL+EAFVIQ+Q VAL
Sbjct: 281 TIPYIRQDIPIIIVFRALGFVADREILELIVYDFDNKDMMEMLRPSLEEAFVIQDQAVAL 340
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG RG G T+E+RIKYA+EILQKEMLPHVG+S +CETKKAYF GY++HRLLLA+ G
Sbjct: 341 DYIGKRGTTTGATREKRIKYAKEILQKEMLPHVGISQYCETKKAYFFGYIIHRLLLAAQG 400
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
+R LDDRDHY VR Y QK +D GK+FNL +A+K+K
Sbjct: 401 KRPLDDRDHYGNKRLDLAGPLLGTLFRQLFKKLNKDVRGYLQKCVDSGKEFNLMMAVKSK 460
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IT+GL+YSLATGNW + A++GVSQVLNRLTFAS+LSHLRR+N+PIGR+GKLAKP
Sbjct: 461 TITNGLKYSLATGNWTSTRSV-GAKSGVSQVLNRLTFASTLSHLRRLNTPIGREGKLAKP 519
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGMICPAETPEG A GLVKNLALMAYISVGS +PILEFLEEWS ENLEEI+P
Sbjct: 520 RQLHNTHWGMICPAETPEGQACGLVKNLALMAYISVGSASAPILEFLEEWSTENLEEISP 579
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S I ATKIFVNG WVGIHR P+ L+ TLR LRR +D + +EVS++RDIR++E+R++TDA
Sbjct: 580 SNIPAATKIFVNGAWVGIHRQPDHLVQTLRSLRRCVD-VSAEVSVVRDIREQELRLYTDA 638
Query: 573 GRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTM 628
GR CRPL I + LLLKK I ++ ++ + GW LV G VEYID EEET M
Sbjct: 639 GRCCRPLFIVDKQRLLLKKSDIRDIQKLQQDESLSEKGWSHLVSQGFVEYIDCEEEETVM 698
Query: 629 IAM 631
IAM
Sbjct: 699 IAM 701
>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/664 (61%), Positives = 496/664 (74%), Gaps = 37/664 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH
Sbjct: 54 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 113
Query: 61 PPRYLLK--FEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
L K F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++ V+++G
Sbjct: 114 FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 173
Query: 117 --EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
E T ++ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 174 CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVL 233
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +KYAY E+RS E+ +RP S+++V M++R G K + G
Sbjct: 234 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGA--KGGSSG 291
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ +IPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 292 QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 351
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RGA GVTKE+RIKYA+EILQKEMLPHVGV +FCETKKAY+ GY++HRLL
Sbjct: 352 QQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLL 411
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
+ +LGRR DDRDHY VR Y QK +D GK+ NL+
Sbjct: 412 MCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQF 471
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIK K IT GL+YSLATGNWG +A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+G
Sbjct: 472 AIKAKTITSGLKYSLATGNWGQANQA-GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 530
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEW EN
Sbjct: 531 KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENF 590
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+P+ I A KIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++RDIR +E+R
Sbjct: 591 EEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQID-VNTEVGVVRDIRLKELR 649
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
++TD GR RPL I EN LL+KKRHI L++R+ GW LV G +EYIDT EEETT
Sbjct: 650 LYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETT 709
Query: 628 MIAM 631
MI+M
Sbjct: 710 MISM 713
>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/664 (61%), Positives = 496/664 (74%), Gaps = 37/664 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH
Sbjct: 50 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 109
Query: 61 PPRYLLK--FEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
L K F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++ V+++G
Sbjct: 110 FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 169
Query: 117 --EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
E T ++ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 170 CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVL 229
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +KYAY E+RS E+ +RP S+++V M++R G K + G
Sbjct: 230 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGA--KGGSSG 287
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ +IPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 288 QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 347
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RGA GVTKE+RIKYA+EILQKEMLPHVGV +FCETKKAY+ GY++HRLL
Sbjct: 348 QQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLL 407
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
+ +LGRR DDRDHY VR Y QK +D GK+ NL+
Sbjct: 408 MCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQF 467
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIK K IT GL+YSLATGNWG +A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+G
Sbjct: 468 AIKAKTITSGLKYSLATGNWGQANQA-GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 526
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEW EN
Sbjct: 527 KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENF 586
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+P+ I A KIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++RDIR +E+R
Sbjct: 587 EEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQID-VNTEVGVVRDIRLKELR 645
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
++TD GR RPL I EN LL+KKRHI L++R+ GW LV G +EYIDT EEETT
Sbjct: 646 LYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETT 705
Query: 628 MIAM 631
MI+M
Sbjct: 706 MISM 709
>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
Length = 1178
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/666 (61%), Positives = 497/666 (74%), Gaps = 39/666 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT---STE 57
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S +I+++ E+QH + E
Sbjct: 7 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNPGRNNE 66
Query: 58 VETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
+ +KF QIYLSKP E DG + + P ARLRNLTYSAPLY DI K V R+GE
Sbjct: 67 YSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYVTRKGE 126
Query: 118 --EPVTTQHQ--KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
E T Q + K FIGK+PIMLRS+YC L +D+DLTEL ECP D GGYFIINGSEKV
Sbjct: 127 DGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKV 186
Query: 174 LIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQEKM+TN VYVF + +KYAY E+RS E +RP S+++V M++R G K +
Sbjct: 187 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGA--KAGSS 244
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
GQ I A LPYIKQEIPI++VFRALGFVAD+DILEHI YDF D MME+++PSL+EAFVIQ
Sbjct: 245 GQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAFVIQ 304
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q VAL++IG RG+ GVT+E+RIKYA++ILQKEMLPHVGV ++CETKKAYF GY++HRL
Sbjct: 305 NQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYIIHRL 364
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
LL +LGRR DDRDHY VR Y QK +D GK+ NL
Sbjct: 365 LLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKEVNLA 424
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
A+K K IT GL+YSLATGNWG Q + ARAGVSQVLNRLT+AS+LSHLRR+NSPIGR+
Sbjct: 425 YAVKAKTITSGLKYSLATGNWG-QANSGNARAGVSQVLNRLTYASTLSHLRRLNSPIGRE 483
Query: 447 GK-LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
G+ LAKPRQLHN+ WGM+CPAETPEG A GLVKNLALMAYI+VGS +PIL FLEEWS E
Sbjct: 484 GRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTE 543
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I +ATKIFVNG WVGIHR+PE L+ TLR+LRRQ+D + +EV ++RDIR +E
Sbjct: 544 NFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVD-VNTEVGVVRDIRLKE 602
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEE 625
+R++TD GR RPL I E LL+KK I L++++ GW LV G +EY+DT EEE
Sbjct: 603 LRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYVDTEEEE 662
Query: 626 TTMIAM 631
TTMI+M
Sbjct: 663 TTMISM 668
>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
Length = 1178
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/666 (61%), Positives = 497/666 (74%), Gaps = 39/666 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT---STE 57
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S +I+++ E+QH + E
Sbjct: 7 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNPGRNNE 66
Query: 58 VETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
+ +KF QIYLSKP E DG + + P ARLRNLTYSAPLY DI K V R+GE
Sbjct: 67 YSGETTFKIKFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYADIIKYVTRKGE 126
Query: 118 --EPVTTQHQ--KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
E T Q + K FIGK+PIMLRS+YC L +D+DLTEL ECP D GGYFIINGSEKV
Sbjct: 127 DGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKV 186
Query: 174 LIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQEKM+TN VYVF + +KYAY E+RS E +RP S+++V M++R G K +
Sbjct: 187 LIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGA--KAGSS 244
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
GQ I A LPYIKQEIPI++VFRALGFVAD+DILEHI YDF D MME+++PSL+EAFVIQ
Sbjct: 245 GQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAFVIQ 304
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q VAL++IG RG+ GVT+E+RIKYA++ILQKEMLPHVGV ++CETKKAYF GY++HRL
Sbjct: 305 NQQVALDYIGKRGSTVGVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFGYIIHRL 364
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
LL +LGRR DDRDHY VR Y QK +D GK+ NL
Sbjct: 365 LLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCVDNGKEVNLA 424
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
A+K K IT GL+YSLATGNWG Q + ARAGVSQVLNRLT+AS+LSHLRR+NSPIGR+
Sbjct: 425 YAVKAKTITSGLKYSLATGNWG-QANSGNARAGVSQVLNRLTYASTLSHLRRLNSPIGRE 483
Query: 447 GK-LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
G+ LAKPRQLHN+ WGM+CPAETPEG A GLVKNLALMAYI+VGS +PIL FLEEWS E
Sbjct: 484 GRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILVFLEEWSTE 543
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I +ATKIFVNG WVGIHR+PE L+ TLR+LRRQ+D + +EV ++RDIR +E
Sbjct: 544 NFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTLRQLRRQVD-VNTEVGVVRDIRLKE 602
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEE 625
+R++TD GR RPL I E LL+KK I L++++ GW LV G +EY+DT EEE
Sbjct: 603 LRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEAGENGWHELVSKGFIEYVDTEEEE 662
Query: 626 TTMIAM 631
TTMI+M
Sbjct: 663 TTMISM 668
>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/664 (60%), Positives = 496/664 (74%), Gaps = 37/664 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH
Sbjct: 60 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 119
Query: 61 PPRYLLK--FEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
L K F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++ VV++G
Sbjct: 120 FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVVKKGHD 179
Query: 117 --EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
E T ++ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYF+INGSEKVL
Sbjct: 180 CEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEKVL 239
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +K+AY E+RS E+ +RP S+++V M++R G K + G
Sbjct: 240 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGA--KGGSSG 297
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ +IPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 298 QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 357
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RGA GVT+E+RIKYA+EILQKEMLPHVGV +FCETKKAY+ GY++HRLL
Sbjct: 358 QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLL 417
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
+ +LGRR DDRDHY VR Y QK +D GKD NL+
Sbjct: 418 MCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQF 477
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIK K IT GL+YSLATGNWG +A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+G
Sbjct: 478 AIKAKTITSGLKYSLATGNWGQANQA-GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 536
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEW EN
Sbjct: 537 KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENF 596
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+P+ I A KIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++RDIR +E+R
Sbjct: 597 EEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQID-VNTEVGVVRDIRLKELR 655
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
++TD GR RPL I + LL+KK+HI L++R+ + GW LV G +EYIDT EEETT
Sbjct: 656 LYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDTEEEETT 715
Query: 628 MIAM 631
MI+M
Sbjct: 716 MISM 719
>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera]
gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
Length = 1193
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/667 (61%), Positives = 500/667 (74%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 22 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSD 81
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
+ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK ++++G
Sbjct: 82 FLETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRIIKKG 139
Query: 117 ---EEPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC + +++DLTEL ECP D GGYFIINGSEK
Sbjct: 140 HDLEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEK 199
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYAY E+RS E +RP S+++V M++R S K +
Sbjct: 200 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSR--TSAKGGS 257
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 258 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVI 317
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RG+ GVT+E+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HR
Sbjct: 318 QNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR 377
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 378 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVNL 437
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 438 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 496
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEWS E
Sbjct: 497 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTE 556
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I +TKIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV +IRDIR +E
Sbjct: 557 NFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVD-VNTEVGVIRDIRLKE 615
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+R++TD GR RPL I E LL+KKR I L+ R+ + GW LV G +EY+DT EE
Sbjct: 616 LRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEE 675
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 676 ETTMISM 682
>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1193
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/661 (62%), Positives = 493/661 (74%), Gaps = 42/661 (6%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEVETPP 62
W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S ET
Sbjct: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI- 87
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEP 119
Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++K VV++G EE
Sbjct: 88 -YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVVKKGHDGEEV 146
Query: 120 VTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVLIAQE
Sbjct: 147 TETQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
Query: 179 KMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
KM+TN VYVF + +KYAY E+RS E +RP ST++V M++R S K + GQ I
Sbjct: 207 KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSSKGGSSGQYIR 264
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D MME+++PSL+EAFVIQ Q VA
Sbjct: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAFVIQNQQVA 324
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG RGA GVTKE+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +L
Sbjct: 325 LDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 384
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GRR DDRDHY VR Y QK +D GKD NL+ AIK
Sbjct: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKA 444
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAK
Sbjct: 445 KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEI+
Sbjct: 504 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
P+ I ATKIFVNGCW+GIHRDP+ L+ TLRKLRR++D + +EV ++RDI +E+RI+TD
Sbjct: 564 PAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVD-VNTEVGVVRDIILKELRIYTD 622
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIA 630
GR RPL I + LL+KK+ I L++R+ + GW LV G +EYIDT EEETTMI+
Sbjct: 623 YGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMIS 682
Query: 631 M 631
M
Sbjct: 683 M 683
>gi|414871745|tpg|DAA50302.1| TPA: hypothetical protein ZEAMMB73_468424, partial [Zea mays]
Length = 762
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/664 (60%), Positives = 494/664 (74%), Gaps = 41/664 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTE----V 58
Q+ W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH
Sbjct: 61 QDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFA 120
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
ET R + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++ V+++G
Sbjct: 121 ETLHR--ISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 178
Query: 117 --EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
E T ++ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 179 CEEVTETAEYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVL 238
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +K+AY E+RS E+ +RP S ++V M++R G K + G
Sbjct: 239 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASGMFVRMLSRAGA--KGGSSG 296
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ +IPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 297 QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 356
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RGA GVT+E+RIKYA+EILQKEMLPHVGV +FCETKKAY+ GY++HRLL
Sbjct: 357 QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLL 416
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
+ +L RR DDRDHY VR Y QK +D GK+ NL+
Sbjct: 417 MCALSRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQF 476
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIK K +T GL+YSLATGNWG +A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+G
Sbjct: 477 AIKAKTVTSGLKYSLATGNWGQANQA-GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 535
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEW EN
Sbjct: 536 KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENF 595
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+P+ I A KIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++RDIR +E+R
Sbjct: 596 EEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQID-VNTEVGVVRDIRLKELR 654
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
++TD GR RPL I E LL+KK HI L++R+ + GW LV G +EYIDT EEETT
Sbjct: 655 LYTDYGRCSRPLFIVEGQRLLIKKAHIRALQQRETPDEGWHELVSKGYIEYIDTEEEETT 714
Query: 628 MIAM 631
MI+M
Sbjct: 715 MISM 718
>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1192
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/661 (61%), Positives = 493/661 (74%), Gaps = 42/661 (6%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEVETPP 62
W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S ET
Sbjct: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI- 87
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE--EPV 120
Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++K V+++G E V
Sbjct: 88 -YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 146
Query: 121 TTQHQ--KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
T K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVLIAQE
Sbjct: 147 TEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
Query: 179 KMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
KM+TN VYVF + +KYAY E+RS E +RP ST++V M++R S K + GQ I
Sbjct: 207 KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSSKGGSSGQYIR 264
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF +MME+++PSL+EAFVIQ Q VA
Sbjct: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVA 324
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG RGA GVTKE+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +L
Sbjct: 325 LDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 384
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GRR DDRDHY VR Y QK +D GKD NL+ AIK
Sbjct: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKA 444
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAK
Sbjct: 445 KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEI+
Sbjct: 504 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
P+ I ATKIFVNGCW+GIHRDP+ L+ TL+KLRR++D + +EV ++RDIR +E+RI+TD
Sbjct: 564 PAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVD-VNTEVGVVRDIRLKELRIYTD 622
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIA 630
GR RPL I + LL+KK+ I L++R+ + GW LV G +EYIDT EEETTMI+
Sbjct: 623 YGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMIS 682
Query: 631 M 631
M
Sbjct: 683 M 683
>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cucumis sativus]
gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cucumis sativus]
Length = 1199
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/667 (62%), Positives = 498/667 (74%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 28 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 87
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++K V+++G
Sbjct: 88 VAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKG 145
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEK
Sbjct: 146 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 205
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYA+ E+RS E +RP ST++V M++R S K +
Sbjct: 206 VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGS 263
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 264 SGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVI 323
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RG+ GVTKE+RIKYA+EILQKEMLPHVGV +FCETKKAY+ GY++HR
Sbjct: 324 QNQQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHR 383
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 384 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNL 443
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 444 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 502
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 503 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 562
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I ATKIFVNGCWVGIHRDPE L+ TLR+LRR++D + +EV ++RDIR +E
Sbjct: 563 NFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 621
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I E LL+KK+ I L++R+ + GW LV G +EYIDT EE
Sbjct: 622 LRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESPEDGGWHDLVAKGFIEYIDTEEE 681
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 682 ETTMISM 688
>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 1194
Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/661 (62%), Positives = 495/661 (74%), Gaps = 42/661 (6%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEVETPP 62
W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S ET
Sbjct: 29 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI- 87
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEP 119
Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G EE
Sbjct: 88 -YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 146
Query: 120 VTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVLIAQE
Sbjct: 147 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 206
Query: 179 KMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
KM+TN VYVF + +KYAY E+RS E +RP ST++V M++R S K + GQ I
Sbjct: 207 KMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIR 264
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VA
Sbjct: 265 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVA 324
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG RGA GVTKE+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +L
Sbjct: 325 LDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 384
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GRR DDRDHY VR Y QK +D GKD NL+ AIK
Sbjct: 385 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKA 444
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAK
Sbjct: 445 KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 503
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN EEI+
Sbjct: 504 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEIS 563
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
P+ I ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D + +EV ++RDIR +E+RI+TD
Sbjct: 564 PAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTD 622
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNY-GWQVLVQSGVVEYIDTLEEETTMIA 630
GR RPL I E LL+KK+ I L++R+ + GW LV G +EYIDT EEETTMI+
Sbjct: 623 YGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYIDTEEEETTMIS 682
Query: 631 M 631
M
Sbjct: 683 M 683
>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/678 (59%), Positives = 498/678 (73%), Gaps = 22/678 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ Q+ W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH
Sbjct: 65 IGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAE 124
Query: 61 PPRYLLK--FEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
L K F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++ V+++G
Sbjct: 125 FAETLHKISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHD 184
Query: 117 --EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
E T + K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 185 CEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGECPYDQGGYFIINGSEKVL 244
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +K+AY E+RS E+ +RP S+++V M++R G K + G
Sbjct: 245 IAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGA--KGGSSG 302
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ +IPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 303 QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQN 362
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RGA GVT+E+RIKYA+EILQKEMLPHVGV +FCETKKAY+ GY++HRLL
Sbjct: 363 QQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLL 422
Query: 354 LASLGRRELDDRDHY-----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSL 402
+ +LGRR DDRDHY + + +D GK+ NL+ AIK K IT GL+YSL
Sbjct: 423 MCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMCVDNGKEVNLQFAIKAKTITSGLKYSL 482
Query: 403 ATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGM 462
ATGNWG +A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM
Sbjct: 483 ATGNWGQANQA-GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 541
Query: 463 ICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIF 522
+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEW EN EEI+P+ I A KIF
Sbjct: 542 MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIF 601
Query: 523 VNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA 582
VNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++RDIR +E+R++TD GR RPL I
Sbjct: 602 VNGCWVGIHRNPDLLVKTLRRLRRQID-VNTEVGVVRDIRLKELRLYTDYGRCSRPLFIV 660
Query: 583 ENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVE 642
E LL+KK HI L+ R+ + GW LV G +EYIDT EEETTMI+M + +
Sbjct: 661 EGQRLLIKKAHIIALQHRETPDEGWHELVSKGYIEYIDTEEEETTMISMTISDLHNARHN 720
Query: 643 YIDTLEEETTMIAMSPRL 660
D E T + P L
Sbjct: 721 PEDAYSETYTHCEIHPSL 738
>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1213
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/678 (60%), Positives = 494/678 (72%), Gaps = 58/678 (8%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEVETPP 62
W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S ET
Sbjct: 30 WAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI- 88
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEP 119
Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++K V+++G EE
Sbjct: 89 -YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEV 147
Query: 120 VTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVLIAQE
Sbjct: 148 TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQE 207
Query: 179 KMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
KM+TN VYVF + +KYAY E+RS E +RP ST++V M++R S K + GQ I
Sbjct: 208 KMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRA--SAKGGSSGQYIR 265
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VA
Sbjct: 266 ATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVA 325
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG RG+ GVTKE+RIKYA++ILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +L
Sbjct: 326 LDYIGKRGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAL 385
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GRR DDRDHY VR Y QK +D GKD NL+ AIK
Sbjct: 386 GRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKA 445
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAK
Sbjct: 446 KTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 504
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE--- 508
PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN E
Sbjct: 505 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEVLV 564
Query: 509 -----EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDI---------IVSE 554
EI+P+ I ATKIFVNGCW+GIHRDP+ L+ TLRKLRR+ + +E
Sbjct: 565 ISFIKEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEGFDVVQVDVNTE 624
Query: 555 VSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQS 613
V ++RDIR +E+RI+TD GR RPL I + LL+KK+ I +L++R+ + GW LV
Sbjct: 625 VGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESPEDGGWHDLVSK 684
Query: 614 GVVEYIDTLEEETTMIAM 631
G +EYIDT EEETTMI+M
Sbjct: 685 GFIEYIDTEEEETTMISM 702
>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
Length = 1188
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/667 (61%), Positives = 497/667 (74%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 21 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 80
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 81 FAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 138
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEK
Sbjct: 139 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEK 198
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYAY E+RS E+ +RP ST++V M+AR S K +
Sbjct: 199 VLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARA--SAKGGS 256
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 257 SGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 316
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVTKE+RIKYA++ILQKEMLPHVG+ ++CETKKAY+ GY++HR
Sbjct: 317 QNQLVALDYIGKRGATVGVTKEKRIKYAKDILQKEMLPHVGIGEYCETKKAYYFGYIIHR 376
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GK+ NL
Sbjct: 377 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 436
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 437 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 495
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 555
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+PS I ATKIFVNG WVG+HRDP+ L+ TLR+LRR++D + +EV ++RDIR +E
Sbjct: 556 NFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 614
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I +N LL+KKR I L++R+ GW LV G +EYIDT EE
Sbjct: 615 LRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEE 674
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 675 ETTMISM 681
>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide; AltName: Full=Protein EMBRYO
DEFECTIVE 1989
gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/667 (61%), Positives = 496/667 (74%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 21 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 80
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 81 FAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 138
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEK
Sbjct: 139 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEK 198
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYAY E+RS E+ +RP ST++V M+AR S K +
Sbjct: 199 VLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARA--SAKGGS 256
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 257 SGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 316
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVTKE+RIKYAR+ILQKEMLPHVG+ + CETKKAY+ GY++HR
Sbjct: 317 QNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHR 376
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GK+ NL
Sbjct: 377 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 436
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 437 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 495
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 555
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+PS I ATKIFVNG WVG+HRDP+ L+ TLR+LRR++D + +EV ++RDIR +E
Sbjct: 556 NFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 614
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I +N LL+KKR I L++R+ GW LV G +EYIDT EE
Sbjct: 615 LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEE 674
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 675 ETTMISM 681
>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1191
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/667 (61%), Positives = 491/667 (73%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 20 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 80 FAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEK
Sbjct: 138 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 197
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYAY E+RS E +RP ST++V M++R S K +
Sbjct: 198 VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGS 255
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 256 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 315
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVTKE+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HR
Sbjct: 316 QNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR 375
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 376 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNL 435
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 436 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 494
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 554
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I ATKIFVNGCWVGIHRDP+ ++ + R+ + +EV ++RDIR +E
Sbjct: 555 NFEEISPAVIPQATKIFVNGCWVGIHRDPD-MLVRTLRRLRRRVDVNTEVGVVRDIRLKE 613
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I E LL+K++ I L++R+ + GW LV G +EYIDT EE
Sbjct: 614 LRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYIDTEEE 673
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 674 ETTMISM 680
>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1207
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/694 (59%), Positives = 506/694 (72%), Gaps = 42/694 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEV 58
QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH S V
Sbjct: 40 QEDAWTVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPGRQSDFV 99
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
E Y + F QIYLSKP E DG + + P ARLRNLTYS+PLYVD+TK VV++G
Sbjct: 100 EMV--YRISFGQIYLSKPMMTESDGETASLFPKAARLRNLTYSSPLYVDVTKRVVKKGHD 157
Query: 117 -EEPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 158 CEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIINGSEKVL 217
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF ++ +KYAY +E+RS E +RP S ++V M++ S K + G
Sbjct: 218 IAQEKMSTNHVYVFKIRQPNKYAYVSEVRSMAESQNRPPSGMFVRMVSS--SSAKGGSSG 275
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ EIPI++VFRALGFVAD+DILEHI Y+F D +MM++++PSL+EAFVIQ
Sbjct: 276 QYIRATLPYIRTEIPIVVVFRALGFVADKDILEHICYEFTDNKMMDLLRPSLEEAFVIQN 335
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RG+ GVTKE+RI+YA+EILQ+EMLPHVG ++CETKKAY+ GY++HRLL
Sbjct: 336 QQVALDYIGKRGSTVGVTKEKRIRYAKEILQREMLPHVGTGEYCETKKAYYFGYIIHRLL 395
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
L +LGRR DDRDHY VR Y QK +D GKD NL+
Sbjct: 396 LCALGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQF 455
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
AIK K IT GL+YSLATGNWG Q + +RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+G
Sbjct: 456 AIKAKTITSGLKYSLATGNWG-QANSAGSRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 514
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEWS EN
Sbjct: 515 KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENF 574
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+P+ I ATKIFVNGCWVGIHR+PE L+ TLR+LRRQ+D + +EV +IRDIR +E+R
Sbjct: 575 EEISPAVIPLATKIFVNGCWVGIHRNPELLVRTLRQLRRQVD-VNTEVGVIRDIRLKELR 633
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEET 626
++TD GR RPL I E L +KK+ I L++R+ GW LV G +EY+DT EEET
Sbjct: 634 LYTDCGRCSRPLFIVEKQKLQIKKKDILALQQRESPEEVGWHDLVAKGYIEYVDTEEEET 693
Query: 627 TMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPRL 660
TMI+M + S + D E T + P L
Sbjct: 694 TMISMTINDLTSARLCPDDAYSETYTHCEIHPSL 727
>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
Length = 1234
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/681 (60%), Positives = 494/681 (72%), Gaps = 46/681 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE--T 60
QE W VI++YF+EKGLVRQQLDSFDEFIQ ++Q +V+DS I + EAQ+T + + T
Sbjct: 57 QEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRHIRINPEAQYTPGQAKAAT 116
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDIT----------K 110
Y+++F QIYLSKPT E DGS S M P+EARLRNLTYSAPLYVD+
Sbjct: 117 DTIYVIQFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANATGP 176
Query: 111 TVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGS 170
T + + E + K FIG +PIMLRS YC+L TD++LTELNEC D GGYF+INGS
Sbjct: 177 TKIEEMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLINGS 236
Query: 171 EKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKVLIAQE+M+ N VY F SKY++ E RS +EH RPTST++V M R G K
Sbjct: 237 EKVLIAQERMSNNHVYCFRKSGVSKYSWVCETRSHVEHGVRPTSTMYVQMYQRSG---GK 293
Query: 230 SAI-GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
SAI G +I A++PYI+Q+IP++I+FRALGFVADR+ILEHI YDF D E+ME KPSL+EA
Sbjct: 294 SAISGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEA 353
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQEQ VAL+FIG RG+ V K RI+YA++ILQKEMLPHVGV D ETKKAYFLGY+
Sbjct: 354 FVIQEQEVALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYV 413
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
VH+LL+ SLGR DDRDHY V+ Y QK +D GKD
Sbjct: 414 VHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDNGKD 473
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LAI+++ IT+GLRYSLATGNWG QK A ++AGVSQVLNRLT+ASSLSHLRR+N+P
Sbjct: 474 FNLTLAIRSRTITNGLRYSLATGNWGMQKTA--SKAGVSQVLNRLTYASSLSHLRRLNTP 531
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
+GR+GK A+PRQLHNT WGMICPAETPEG AVGLVKNLALMAYISVGS +PILEFLEEW
Sbjct: 532 LGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEW 591
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ ENLEEI P I +TKIFVNG WVG+HR+P +L+ TLR LRR +DI +EVS+IRD+
Sbjct: 592 ATENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELVRTLRSLRRCVDID-AEVSVIRDLM 650
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTL 622
+RE+RI+TDAGR+CRPL I E LLL+K + L+ NY W L+ GVVE IDT
Sbjct: 651 NRELRIYTDAGRVCRPLFIVEENQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTE 710
Query: 623 EEETTMIAMWQVLVQSGVVEY 643
EEE MIAM V G +Y
Sbjct: 711 EEEVCMIAMEPKDVGLGTQQY 731
>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/694 (59%), Positives = 505/694 (72%), Gaps = 42/694 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTE----V 58
QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH +
Sbjct: 31 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFA 90
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD++K V+++G
Sbjct: 91 ETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHD 148
Query: 117 -EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECPLD GGYFIINGSEKVL
Sbjct: 149 GEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVL 208
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +KYAY E+RS E +RP ST++V M++R S K + G
Sbjct: 209 IAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSR--TSAKGGSSG 266
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ EIPI+IVFRALGFVAD+DILEHI ++ D +MME+++PSL+EAFVIQ
Sbjct: 267 QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAFVIQN 326
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RG+ GVTKE+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HRLL
Sbjct: 327 QQVALDYIGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLL 386
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
L +LGRR DDRDHY VR Y QK +D GKD NL+
Sbjct: 387 LCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQF 446
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
IK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+BSPIGR+G
Sbjct: 447 XIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREG 505
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW EN
Sbjct: 506 KLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENF 565
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+P+ I ATKIFVNG WVGIHR+P+ L+ TLR+LRR++D + +EV ++RDIR +E+R
Sbjct: 566 EEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVD-VNTEVGVVRDIRLKELR 624
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEET 626
I+TD GR RPL I E LL+KK+ + L++R+ ++ GW LV G +EYIDT EEET
Sbjct: 625 IYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHELVAKGFIEYIDTEEEET 684
Query: 627 TMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPRL 660
TMI+M + S V + + T + P L
Sbjct: 685 TMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSL 718
>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide
gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/667 (60%), Positives = 492/667 (73%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 20 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 80 FAETI--YKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECPLD GGYFIINGSEK
Sbjct: 138 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 197
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYA+ E+RS + +RP ST++V M++R S K +
Sbjct: 198 VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSR--TSAKGGS 255
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVI
Sbjct: 256 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVI 315
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVT+E+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HR
Sbjct: 316 QNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR 375
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 376 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNL 435
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 436 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 494
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 554
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I ATKIFVNG WVGIHRDP+ ++ + R+ + +EV ++RDIR +E
Sbjct: 555 NFEEISPAVIPQATKIFVNGTWVGIHRDPD-MLVRTLRRLRRRVDVNTEVGVVRDIRLKE 613
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I E L++KK+ I L++R+ + GW LV G +EYIDT EE
Sbjct: 614 LRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEE 673
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 674 ETTMISM 680
>gi|224077110|ref|XP_002305136.1| predicted protein [Populus trichocarpa]
gi|222848100|gb|EEE85647.1| predicted protein [Populus trichocarpa]
Length = 690
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/682 (60%), Positives = 498/682 (73%), Gaps = 59/682 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEV 58
QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 14 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFA 73
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 74 ETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 131
Query: 117 -EEPVTTQ-HQKSFIGK--------IPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
EE TQ K FIGK +PIMLRS+YC L +++DLTEL ECP D GGYFI
Sbjct: 132 GEEVTETQDFTKVFIGKASIMNYLFVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFI 191
Query: 167 INGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
INGSEKVLIAQEKM+TN VYVF + +KYAY E+RS E +RP ST++V M++R
Sbjct: 192 INGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSR--T 249
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL
Sbjct: 250 SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSL 309
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
+EAFVIQ Q VAL++IG RGA GVT+E+RIKYA+EILQKEMLPHVGV ++CETKKAY+
Sbjct: 310 EEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYF 369
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GY++HRLLL +LGRR DDRDHY VR Y QK +D
Sbjct: 370 GYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDN 429
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+
Sbjct: 430 GKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRL 488
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFL
Sbjct: 489 NSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFL 548
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EEW EN EEI+P+ I ATKIFVNG WVGIHRDP+ L+ TLR+LRR++D + +EV ++R
Sbjct: 549 EEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRLRRRVD-VNTEVGVVR 607
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERD----YNNY------GWQV 609
DIR +E+RI+TD GR RPL I E LL++K+ I L++R YN++ GW
Sbjct: 608 DIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRVSHLIYNDHLFKYEGGWHD 667
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
LV G +EYIDT EEETTMI+M
Sbjct: 668 LVSKGFIEYIDTEEEETTMISM 689
>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1198
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/663 (59%), Positives = 493/663 (74%), Gaps = 38/663 (5%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT--STEVET 60
QE W VI++YF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH
Sbjct: 31 QEDAWTVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGGNSDFA 90
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---E 117
Y + F QIYLSKP E DG + + P ARLRNLTYS+PLYVD+TK VV++G E
Sbjct: 91 EAMYRISFGQIYLSKPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVTKRVVKKGFDCE 150
Query: 118 EPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
E TQ K FIGK+PIMLRS+YC L L ++DL +L ECP D GGYFI+NGSEKVLIA
Sbjct: 151 EVTETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVNGSEKVLIA 210
Query: 177 QEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QEKM+TN VYVF + +KY+Y E+RS E ++ S ++V M++R G K+ GQ
Sbjct: 211 QEKMSTNHVYVFKKRQPNKYSYVAEVRSIAESQNKAPSGMFVRMLSRSGA--KRGTSGQY 268
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
I A LPYI+ E+PI+I+FRALGFVAD+DILEHI YDF+D +MME+++P L+EAFVIQ Q
Sbjct: 269 IYATLPYIRTEVPIIIIFRALGFVADKDILEHICYDFNDSKMMELLRPFLEEAFVIQNQQ 328
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
VAL++IG RG+ GVT+++RIKYAREILQ+EMLPHVG ++CETKKAY+ GY+++RLLL
Sbjct: 329 VALDYIGKRGSTIGVTRDKRIKYAREILQREMLPHVGTEEYCETKKAYYFGYIINRLLLC 388
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+LGRR DDRDHY VR Y QK +D GKD NL+ AI
Sbjct: 389 ALGRRPEDDRDHYANKRLDLAGPLLAGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAI 448
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K K IT GL+YS+ATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKL
Sbjct: 449 KAKTITSGLKYSIATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKL 507
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFL+EWS EN EE
Sbjct: 508 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLDEWSTENFEE 567
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
I+P+ I ATKIFVNG W+GIHR+PE L+ TLR+LRRQ+D + +EV IIRDI +E+R++
Sbjct: 568 ISPAVIPQATKIFVNGNWIGIHRNPELLVRTLRQLRRQVD-VNTEVGIIRDIHLKELRLY 626
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTM 628
TD GR RPL I + L++KK+ I L++R+ + YGW LV++G VEY+DT EEETTM
Sbjct: 627 TDYGRCSRPLFIVDKQRLVIKKKDILALQQRESADEYGWHDLVRNGSVEYVDTEEEETTM 686
Query: 629 IAM 631
I+M
Sbjct: 687 ISM 689
>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/667 (61%), Positives = 495/667 (74%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 21 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 80
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 81 FAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 138
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEK
Sbjct: 139 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEK 198
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYAY E+RS E+ +RP ST++V M+AR S K +
Sbjct: 199 VLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARA--SAKGGS 256
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 257 SGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 316
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVTKE+RIKYAR+ILQKEML +VG+ + CETKKAY+ GY++HR
Sbjct: 317 QNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYIIHR 376
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GK+ NL
Sbjct: 377 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 436
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 437 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 495
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 555
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+PS I ATKIFVNG WVG+HRDP+ L+ TLR+LRR++D + +EV ++RDIR +E
Sbjct: 556 NFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 614
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I +N LL+KKR I L++R+ GW LV G +EYIDT EE
Sbjct: 615 LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEE 674
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 675 ETTMISM 681
>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/667 (61%), Positives = 495/667 (74%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 21 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 80
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 81 FAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 138
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEK
Sbjct: 139 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEK 198
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYAY E+RS E+ +RP ST++V M+AR S K +
Sbjct: 199 VLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARA--SAKGGS 256
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 257 SGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 316
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVTKE+RIKYAR+ILQKEML +VG+ + CETKKAY+ GY++HR
Sbjct: 317 QNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLLYVGIGEHCETKKAYYFGYIIHR 376
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GK+ NL
Sbjct: 377 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 436
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 437 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 495
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 555
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+PS I ATKIFVNG WVG+HRDP+ L+ TLR+LRR++D + +EV ++RDIR +E
Sbjct: 556 NFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 614
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I +N LL+KKR I L++R+ GW LV G +EYIDT EE
Sbjct: 615 LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEE 674
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 675 ETTMISM 681
>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/677 (60%), Positives = 495/677 (73%), Gaps = 43/677 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 24 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 83
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 84 FAETI--YKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 141
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECPLD GGYFIINGSEK
Sbjct: 142 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 201
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYA+ E+RS E +RP ST++V M++R S K +
Sbjct: 202 VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGS 259
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVI
Sbjct: 260 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVI 319
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVTKE+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HR
Sbjct: 320 QNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR 379
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 380 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNL 439
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 440 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 498
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEE E
Sbjct: 499 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEXGTE 558
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I ATKIFVBG W+GIHRDP+ ++ + R+ + +EV ++RDIR +E
Sbjct: 559 NFEEISPAVIPQATKIFVBGTWMGIHRDPD-MLVRTLRRLRRRVDVNTEVGVVRDIRLKE 617
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I E LL+KK+ I L++R+ GW LV G +EYIDT EE
Sbjct: 618 LRIYTDYGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYIDTEEE 677
Query: 625 ETTMIAMW-QVLVQSGV 640
ETTMI+M LVQ+ +
Sbjct: 678 ETTMISMTINDLVQASI 694
>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
Length = 1205
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/667 (59%), Positives = 493/667 (73%), Gaps = 43/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTE--- 57
+ Q+ W VI++YF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH +
Sbjct: 40 ITQDDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQPD 99
Query: 58 -VETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
VET Y +KF QIYLS+P E DG + + P ARLRNLTYS+PLYVD+ K V+++G
Sbjct: 100 FVETI--YKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKG 157
Query: 117 E--EPVTTQHQ--KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
E VT + K FIGK+PIMLRS+YC L L+++DLTEL ECP D GGYFI+NGSEK
Sbjct: 158 HDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 217
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM++N VYVF + +KYAY E+RS E ++ S ++V M++R S K A
Sbjct: 218 VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSISEGQNKAPSGMFVRMLSR---SNSKGA 274
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI++VFRALGFVAD+DIL HI YDF D +MME+++PSL+EAFVI
Sbjct: 275 YGQYIRATLPYIRTEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVI 334
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RG+ G T+E+RIKYA+EILQ+EMLPHVG ++CETKKAY+ GY++HR
Sbjct: 335 QNQQVALDYIGKRGSTVGFTREKRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHR 394
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 395 LLLCVLGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDGGKDVNL 454
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLTFAS+LSHLRR+NSPIGR
Sbjct: 455 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGR 513
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEWS E
Sbjct: 514 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTE 573
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I +TKIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++R+I +E
Sbjct: 574 NFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVD-VNTEVGVVRNINLKE 632
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYN-NYGWQVLVQSGVVEYIDTLEE 624
+R++TD GR RPL I + L +KK I L+ R+ + + GW LV G +EY+DT EE
Sbjct: 633 LRLYTDYGRCSRPLFIVDKKRLRIKKNDIIALQMRESSEDSGWHDLVAKGFIEYVDTEEE 692
Query: 625 ETTMIAM 631
ETTMIAM
Sbjct: 693 ETTMIAM 699
>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1185
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/664 (59%), Positives = 488/664 (73%), Gaps = 38/664 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT-STEVE 59
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH + E
Sbjct: 15 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGRQAE 74
Query: 60 TPP-RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V R+ E+
Sbjct: 75 IGDVTYKINFGQIYLSKPMMTEADGETATLWPKAARLRNLTYSAPLYVDVTKFVTRKTED 134
Query: 119 PVTTQH----QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
K +IGK+PIMLRS YC L +D+DLTEL ECP D GGYFIINGSEKVL
Sbjct: 135 GEEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIINGSEKVL 194
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +KY Y E+RS E+ +RP S ++V M++R G K + G
Sbjct: 195 IAQEKMSTNHVYVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRMLSRAGA--KGGSSG 252
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I A LPYI+ EIPI++VFRALGFVAD+DILEHI YDF D MME+++PSL+EAFVIQ
Sbjct: 253 QYIRATLPYIRTEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAFVIQN 312
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RG+ GVT+E+RIKYA+EILQKEMLPHVGV +FCETKKAYF GY++HRLL
Sbjct: 313 QQVALDYIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYIIHRLL 372
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
L ++G E DDRDHY VR Y QK +D GK+ NL
Sbjct: 373 LCAIGGAE-DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDNGKEINLAY 431
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
A+K K IT GL+YSLATGNWG Q RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+G
Sbjct: 432 AVKAKTITSGLKYSLATGNWG-QANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREG 490
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALMAYI+VGS +PILEFLEEWS EN
Sbjct: 491 KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEFLEEWSTENF 550
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EEI+P+ I ++TKIFVNG WVGIHR+PE L+ TLR+LRRQ+D + +EV ++RDIR +E+R
Sbjct: 551 EEISPAVIPNSTKIFVNGLWVGIHRNPELLVRTLRQLRRQVD-VNTEVGVVRDIRLKELR 609
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
++TD GR RPL I E LL+KK+ + L+ ++ + W LV G +EY+DT EEETT
Sbjct: 610 LYTDYGRCSRPLFIVEKQRLLIKKQDVRALQMKESSENSWYDLVSKGFIEYVDTEEEETT 669
Query: 628 MIAM 631
MI+M
Sbjct: 670 MISM 673
>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 1202
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/680 (59%), Positives = 494/680 (72%), Gaps = 52/680 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W VI++YF+EKGLVRQQLDSFDEFIQ ++Q +V+DS I + EAQ+ + +T
Sbjct: 29 QEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKTNT 88
Query: 63 R--YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
Y + F QIYLSKPT E DGS S M P+EARLRNLTYSAPLYVD+ V ++ + P
Sbjct: 89 DTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDV---VCQKYQAPS 145
Query: 121 T-------------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
+ + K FIG +PIMLRS YC+L TD++LTELNEC D GGYFII
Sbjct: 146 SGPANLEDMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFII 205
Query: 168 NGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+M+ N VY F SKY++ E RS +EH RPTST++V M +GG
Sbjct: 206 NGSEKVLIAQERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKGG-- 263
Query: 227 LKKSAI-GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
KSAI G +I A++PYI+Q+IP++I+FRALGFVADR+ILEHI YDF D E+ME K SL
Sbjct: 264 -GKSAITGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSL 322
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
+EAFVIQEQ VAL+FIG RG+ V+K RI+YA++ILQKEMLPHVGV D ETKKAYFL
Sbjct: 323 EEAFVIQEQEVALDFIGRRGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFL 382
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GY+VH+LL+ SLGR DDRDHY V+ + QK +D
Sbjct: 383 GYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDN 442
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
GKDFNL LAI+++ IT+GLRYSLATGNWG QK A ++AGVSQVLNRLT+ASSLSHLRR+
Sbjct: 443 GKDFNLTLAIRSRTITNGLRYSLATGNWGMQKSA--SKAGVSQVLNRLTYASSLSHLRRL 500
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+P+GR+GK A+PRQLHNT WGMICPAETPEG AVGLVKNLALMAYISVGS +PILEFL
Sbjct: 501 NTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFL 560
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EEW+ ENLEEI P I +TKIFVNG WVG+HR+P +L+ TLR LRR +DI +EVS+IR
Sbjct: 561 EEWATENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELIRTLRSLRRCVDID-AEVSVIR 619
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYI 619
D+ ++E+RI+TDAGR+CRPL I E+ LLL+K + L+ NY W L+ GVVE I
Sbjct: 620 DLMNKELRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELI 679
Query: 620 DTLEEETTMIAMWQVLVQSG 639
DT EEE MIAM V +G
Sbjct: 680 DTEEEEVCMIAMEPKDVGTG 699
>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1203
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/667 (59%), Positives = 496/667 (74%), Gaps = 43/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTE--- 57
+ Q+ W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH +
Sbjct: 35 ITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQPD 94
Query: 58 -VETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
VET Y +KF QIYLS+P E DG + + P ARLRNLTYS+PLYVD+ K V+++G
Sbjct: 95 FVETI--YKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEVIKKG 152
Query: 117 E--EPVTTQHQ--KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
E VT + K FIGK+PIMLRS+YC L L+++DLTEL ECP D GGYFI+NGSEK
Sbjct: 153 HDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 212
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM++N VYVF + +KYAY E+RS E ++ S+++V M++R S K A
Sbjct: 213 VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQNKAPSSMFVRMLSR---SNAKGA 269
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI++VFRALGFVAD+DIL HI YDF D +MME+++PSL+EAFVI
Sbjct: 270 SGQYIRATLPYIRAEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVI 329
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RG+ G T+ERRIKYA+EILQ+EMLPHVG ++CETKKAY+ GY++HR
Sbjct: 330 QNQQVALDYIGKRGSTVGFTRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHR 389
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 390 LLLCVLGRRPEDDRDHYGBKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNL 449
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLTFAS+LSHLRR+NSPIGR
Sbjct: 450 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGR 508
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEWS E
Sbjct: 509 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTE 568
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I +TKIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++R+I +E
Sbjct: 569 NFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVD-VNTEVGVVRNINLKE 627
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYN-NYGWQVLVQSGVVEYIDTLEE 624
+R++TD GR RPL I E L++KK+ I L+ R+ + + GW LV G +EY+DT EE
Sbjct: 628 LRLYTDYGRCSRPLFIVEKKKLIIKKKDIIALQMRESSEDSGWHDLVAKGFIEYVDTEEE 687
Query: 625 ETTMIAM 631
ETTMIAM
Sbjct: 688 ETTMIAM 694
>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1215
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/675 (56%), Positives = 500/675 (74%), Gaps = 53/675 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI ++F+EKGLVRQQLDSFDEF+Q ++Q +V+++ + LQ H + +
Sbjct: 29 ITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVLQ----HVGGDGDV 84
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQGEEP 119
RY++ F QIYLSKPT E DGS PM P EAR+RNLTY+APLY+D++K T + + ++P
Sbjct: 85 TKRYIIDFGQIYLSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQIARPQDP 144
Query: 120 ---VTTQHQ-------------KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 163
+T + K F+GK+P+MLRS+YC+L+ + ++++ +LNEC D GG
Sbjct: 145 NNPITNPNDFFIDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNECSFDMGG 204
Query: 164 YFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR 222
YF+INGSEKVLIAQE+MATNTVYVFS + +++ EIRS E S+ S L++ MM
Sbjct: 205 YFVINGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPLFIKMMR- 263
Query: 223 GGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 282
S ++ GQ I A LPYI+ EIP++IVFRALG V+DRD+LEHI YD +D EM+E++K
Sbjct: 264 --PSAERGTAGQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRNDYEMLELLK 321
Query: 283 PSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKA 342
PS++EAFVIQ+Q+VAL+FIG RG G T+ERRIKYA EILQKE+LPHVG + ET+K+
Sbjct: 322 PSIEEAFVIQDQDVALDFIGKRGTTVGATRERRIKYASEILQKELLPHVGTAYKTETRKS 381
Query: 343 YFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKF 376
YF GYM+HRLLLA+L RRELDDRDHY V Y QK
Sbjct: 382 YFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRILFRKLTRDVAKYLQKC 441
Query: 377 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHL 436
I+ ++FNL LA+K+ IT+GL+YSLATGNWGDQKKA QARAGVSQVLNR TFAS+LSHL
Sbjct: 442 IESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHL 501
Query: 437 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 496
RR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+YISVGS +P++
Sbjct: 502 RRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSANPLI 561
Query: 497 EFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
FLEEW+MENLEE++ ++IAD+TK+FVNG W+GIHRDP +L+ +L+++RR +D I EVS
Sbjct: 562 MFLEEWAMENLEELSATSIADSTKVFVNGVWIGIHRDPGELITSLKQMRRSVD-ISPEVS 620
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
I+RDIR++E+R++TDAGR CRPL + EN L L + + L++ D +++GWQ L+ G+V
Sbjct: 621 IVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTREDVGRLQDPD-DDFGWQDLIAEGIV 679
Query: 617 EYIDTLEEETTMIAM 631
EY+D EEET MI M
Sbjct: 680 EYVDADEEETAMICM 694
>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1174
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/669 (60%), Positives = 492/669 (73%), Gaps = 47/669 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT------ 54
+ QE W+VI+++F+EKGLVRQQLDSF+EFIQ ++Q IV++ +I+L E QH
Sbjct: 14 IGQEDAWVVISSFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQDID 73
Query: 55 STEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---T 111
S E +T Y + F QIYLSKP E DG + + P EARLRNLTYSAPLYVD+ K T
Sbjct: 74 SMEKKT---YKISFNQIYLSKPMVTEADGYTTTLFPKEARLRNLTYSAPLYVDMVKEVTT 130
Query: 112 VVRQGEEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGS 170
V GE V + K+FIGK+PIMLRS YC L+G TD++LTEL ECP D GGYF+INGS
Sbjct: 131 VQPDGETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGS 190
Query: 171 EKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKVLIAQE+M+TN VYVF K SK+ ++ E RS E SR S+ + + G K
Sbjct: 191 EKVLIAQERMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASSCVMRQLHAPG---TK 247
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
A G I LPYI+ +IPI +VFRALGFVAD+DILEHI+YD D EMMEM++PS++EAF
Sbjct: 248 DAPGP-IRCTLPYIRTDIPIFVVFRALGFVADKDILEHIVYDLADNEMMEMLRPSIEEAF 306
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ Q VAL+FIG RG+ GV++E+RIKYA+EILQKE+LPHVGV + CETKKAYFLGYM+
Sbjct: 307 VIQSQEVALDFIGKRGSAVGVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMI 366
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLLL SLGRR DDRDHY VR+Y Q+ ID GK+
Sbjct: 367 HRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEI 426
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
L+LAIK K IT GL+YSLATGNWG Q A RAGVSQVLNRL+++S+LSHLRR+NSPI
Sbjct: 427 QLQLAIKAKTITQGLKYSLATGNWGSQGAA-DIRAGVSQVLNRLSYSSTLSHLRRINSPI 485
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GR+GKLAKPRQLHN+LWGMICPAETPEG AVGLVKNLALMA +SVGS PILEFL+EW+
Sbjct: 486 GREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSEPILEFLDEWT 545
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
MENLEEI+PS IA++TKIF+NG WVG+HR+P L+ TLRKLRRQ DI S VS++ DIR
Sbjct: 546 MENLEEISPSLIAESTKIFLNGVWVGVHRNPADLVRTLRKLRRQCDID-SSVSVVHDIRL 604
Query: 564 REIRIHTDAGRICRPLLIAENG-SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTL 622
+E+R++TD GR RPL I E+ L +KK+HI+ L E+D Y W LV SG +EY+DT
Sbjct: 605 KELRLYTDYGRCTRPLFIVEDDQKLKIKKQHIELLTEKDVTGYTWNELVTSGFIEYVDTE 664
Query: 623 EEETTMIAM 631
EEETTMI+M
Sbjct: 665 EEETTMISM 673
>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
elegans]
Length = 859
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/501 (76%), Positives = 425/501 (84%), Gaps = 30/501 (5%)
Query: 174 LIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
LIAQEKMATNTVYVFSMKD KYA+KTE RSCLE+SSRPTST+WVNM+ARGG KK+A+G
Sbjct: 1 LIAQEKMATNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMG 60
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
QRII ILPYIKQEIPIMIVFRALGFV+DRDIL HIIYDF+DPEMMEMVKPSLDEAFVIQE
Sbjct: 61 QRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQE 120
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
QNVALNFIGARGA+PGVT+E+RIKYAREILQKE+LPHVGVS+ CETKKA+F+GYMVHRLL
Sbjct: 121 QNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLL 180
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA+LGRRELDDRDH +RM AQK+I++ DF L++
Sbjct: 181 LAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDV 240
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
+KT IT GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+G
Sbjct: 241 CVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREG 300
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMENL
Sbjct: 301 KLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENL 360
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EE++PSAIADATKIFVNG WVGIHR+P+QLM TL+KLRRQMDIIVSEVS++RDIRDREIR
Sbjct: 361 EEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIR 420
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHIDNLKER--DYNNYGWQVLVQSGVVEYIDTLEEE 625
I+TDAGR+CRPLLI EN L LKKRHID LKE + N Y W LV GVVE ID++EEE
Sbjct: 421 IYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEE 480
Query: 626 TTMIAMWQVLVQSGVVEYIDT 646
T+MIAM ++SG Y DT
Sbjct: 481 TSMIAMMPEDLRSG--GYCDT 499
>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1193
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/675 (56%), Positives = 498/675 (73%), Gaps = 53/675 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI ++F+EKGLVRQQLDSFDEF+Q ++Q +V+++ + LQ H + +
Sbjct: 7 ITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVLQ----HVGGDGDV 62
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQGEEP 119
RY++ F QIYLSKPT E DGS PM P EAR+RNLTY+APLY+D++K T + + ++P
Sbjct: 63 TKRYIIDFGQIYLSKPTMTEADGSSQPMFPQEARIRNLTYAAPLYIDMSKRTQIARPQDP 122
Query: 120 VTTQHQ----------------KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 163
+ K F+GK+P+MLRS+YC+L+ + ++++ +LNEC D GG
Sbjct: 123 NDPRTNPNDLFVDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNECSFDMGG 182
Query: 164 YFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR 222
YF+INGSEKVLIAQE+MATNTVYVFS + +++ EIRS E S+ S L++ MM
Sbjct: 183 YFVINGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPLFIKMMR- 241
Query: 223 GGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 282
S ++ GQ I A LPYI+ EIP++IVFRALG V+DRD+LEHI YD +D EM+E++K
Sbjct: 242 --PSAERGTAGQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRNDYEMLELLK 299
Query: 283 PSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKA 342
PS++EAFVIQ+Q+VAL+FIG RG G T+ERRIKYA EILQKE+LPHVG + ET+K+
Sbjct: 300 PSIEEAFVIQDQDVALDFIGKRGTTVGATRERRIKYASEILQKELLPHVGTAYKTETRKS 359
Query: 343 YFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKF 376
YF GYM+HRLLLA+L RRELDDRDHY V Y QK
Sbjct: 360 YFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFRKLTRDVAKYLQKC 419
Query: 377 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHL 436
I+ ++FNL LA+K+ IT+GL+YSLATGNWGDQKKA QARAGVSQVLNR TFAS+LSHL
Sbjct: 420 IESSREFNLSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHL 479
Query: 437 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 496
RR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+YISVGS +P++
Sbjct: 480 RRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSANPLI 539
Query: 497 EFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
FLEEW+MENLEE++ ++IAD+TK+FVNG W+GIHRDP +L+ +L+++RR +D I EVS
Sbjct: 540 MFLEEWAMENLEELSATSIADSTKVFVNGVWIGIHRDPGELITSLKQMRRSVD-ISPEVS 598
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
I+RDIR++E+R++TDAGR CRPL + EN L L + + L++ D +++GWQ L+ G+V
Sbjct: 599 IVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTRDDVGRLQDPD-DDFGWQDLIAEGIV 657
Query: 617 EYIDTLEEETTMIAM 631
EY+D EEET MI M
Sbjct: 658 EYVDADEEETAMICM 672
>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1203
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/667 (59%), Positives = 493/667 (73%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ Q+ W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV+++ I+++ E+QH S
Sbjct: 34 ITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQSD 93
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
V+T Y +KF QIYLS+P E DG + + P ARLRNLTYS+PLYVD+ K V+++G
Sbjct: 94 FVDTI--YKIKFTQIYLSRPMMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEVIKKG 151
Query: 117 ---EEPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE Q K FIGK+PIMLRS+YC L L+++DLTEL ECP D GGYFI+NGSEK
Sbjct: 152 HDYEEVSECQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 211
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM++N VYVF + +KYAY E+RS E ++ ST++V M++R + S
Sbjct: 212 VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQTKAPSTMFVRMLSRSNAKVGSS- 270
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYIK EIPI+IVFRALGFVAD+DIL HI YDF D +MME+++PSL+EAFVI
Sbjct: 271 -GQYIKATLPYIKNEIPIIIVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAFVI 329
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RG+ G ++ERRIKYA+EILQ+EMLPHVG ++CETKKAY+ GY++HR
Sbjct: 330 QNQQVALDYIGKRGSTVGFSRERRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHR 389
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 390 LLLCVLGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDSGKDVNL 449
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLTFAS+LSHLRR+NSPIGR
Sbjct: 450 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGR 508
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEWS E
Sbjct: 509 EGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTE 568
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I +TKIFVNGCWVGIHR+P+ L+ TLR+LRRQ+D + +EV ++R+I +E
Sbjct: 569 NFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVD-VNTEVGVVRNINLKE 627
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYN-NYGWQVLVQSGVVEYIDTLEE 624
+R++TD GR RPL I + L++KK+ I L+ RD + + GW L G +EY+DT EE
Sbjct: 628 LRLYTDYGRCSRPLFIVDKKKLIIKKKDILALQLRDSSEDSGWHDLXAKGFIEYVDTEEE 687
Query: 625 ETTMIAM 631
ETTMIAM
Sbjct: 688 ETTMIAM 694
>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
Length = 1171
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/654 (61%), Positives = 478/654 (73%), Gaps = 42/654 (6%)
Query: 16 EKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT--STEVETPPRYLLKFEQIYL 73
EKGLVRQQLDSFDEFIQ ++Q +V+DS I + EAQ+ + T Y + F QIYL
Sbjct: 27 EKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKANTDTIYNISFGQIYL 86
Query: 74 SKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIP 133
SKPT E DGS S M P+EARLRNLTYSAPLYVD+ Q E P K FIG +P
Sbjct: 87 SKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVDMDPYDQVETP------KEFIGMVP 140
Query: 134 IMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD- 192
IMLRS YC+L TD++LTELNEC D GGYFIINGSEKVLIAQE+M+ N VY F
Sbjct: 141 IMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKNAA 200
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI-GQRIIAILPYIKQEIPIMI 251
SKY++ E RS +EH RPTST++V M + G KSAI G +I A++PYI+Q+IP++I
Sbjct: 201 SKYSWVCETRSHVEHGVRPTSTMYVQMYQKSG---GKSAITGNQIRAVIPYIRQDIPVVI 257
Query: 252 VFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVT 311
+FRALGFVADR+ILEHI YDF D E+ME K SL+EAFVIQEQ VAL+FIG RG+ V+
Sbjct: 258 IFRALGFVADREILEHICYDFSDAELMERFKSSLEEAFVIQEQEVALDFIGRRGSAINVS 317
Query: 312 KERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY--- 368
K RI+YA++ILQKEMLPHVGV D ETKKAYFLGY+VH+LL+ SLGR DDRDHY
Sbjct: 318 KADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNK 377
Query: 369 -----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATG 405
V+ + QK +D GKDFNL LAI+++ IT+GLRYSLATG
Sbjct: 378 RLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATG 437
Query: 406 NWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 465
NWG QK A ++AGVSQVLNRLT+ASSLSHLRR+N+P+GR+GK A+PRQLHNT WGMICP
Sbjct: 438 NWGMQKSA--SKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICP 495
Query: 466 AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 525
AETPEG AVGLVKNLALMAYISVGS +PILEFLEEW+ ENLEEI P I +TKIFVNG
Sbjct: 496 AETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQIIPHSTKIFVNG 555
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG 585
WVG+HR+P +L+ TLR LRR +D I +EVS+IRD+ ++E+RI+TDAGR+CRPL I E+
Sbjct: 556 NWVGVHREPNELIRTLRSLRRCVD-IDAEVSVIRDLMNKELRIYTDAGRVCRPLFIVEDN 614
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSG 639
LLL+K + L+ NY W L+ GVVE IDT EEE MIAM V +G
Sbjct: 615 QLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGTG 668
>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
Length = 1175
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/660 (57%), Positives = 481/660 (72%), Gaps = 40/660 (6%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT---STEVETPPR 63
W VI+AYF+EKGLVRQQLDSF++FI S+Q IV+++ I + ++QH E +
Sbjct: 23 WAVISAYFEEKGLVRQQLDSFNDFINTSLQEIVDENKLISITPQSQHVPGMQVEDDVEKI 82
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDI---TKTVVRQGEEPV 120
+ ++F QIYLSKP E DG + + P EARLRNLTY+APLYVDI K V G E V
Sbjct: 83 FEVEFGQIYLSKPVFIEADGETAVLFPKEARLRNLTYAAPLYVDIERRDKVVHSDGSEEV 142
Query: 121 -TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
T + K F+G +PIMLRS YC L+G ++RDL +L ECP D GGYF+INGSEKVLIAQE+
Sbjct: 143 EVTPYPKVFLGDVPIMLRSDYCNLSGRSERDLCDLGECPYDQGGYFVINGSEKVLIAQER 202
Query: 180 MATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA N VYVF + SKYAY E RS +E S+R ST+ V M++R GQ GQ I A
Sbjct: 203 MANNHVYVFRKSQPSKYAYVAECRSVVEGSTRTVSTMQVKMLSRAGQK----GAGQCIRA 258
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PY++ +IPI+I+FRALGFVAD+DILEHI+YDF D MME ++PS++EAF IQ Q VAL
Sbjct: 259 SIPYVRADIPILIIFRALGFVADKDILEHIVYDFGDTTMMEALRPSIEEAFPIQSQEVAL 318
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG RG+ G T+ RI+YARE+LQKE+LPHVG+ +FCETKKAYF GY++HRLLL +LG
Sbjct: 319 DYIGKRGSTIGATRNARIQYARELLQKELLPHVGMEEFCETKKAYFFGYVIHRLLLVALG 378
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RRE DDRDHY VR Y QK +D+GK+ NL AI
Sbjct: 379 RREEDDRDHYGNKRLDLGGPLLANLFRQLFRKLSKDVRGYVQKCVDKGKEINLTSAINKD 438
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IT GLRYSLATGNWG A + R GVSQVLNRLT+AS+LSHLRR+NSPIGR+GK+AKP
Sbjct: 439 TITRGLRYSLATGNWG-VVGAGEVRPGVSQVLNRLTYASTLSHLRRINSPIGREGKIAKP 497
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHN+ WGMICPAETPEG A GLVKNLALM YISVG +P+L+FL+EW+ E+LEEI+P
Sbjct: 498 RQLHNSQWGMICPAETPEGQACGLVKNLALMTYISVGCASNPVLDFLQEWATEDLEEISP 557
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S I ATKIFVNG WVGIHRDP+ L+ TLR +RRQ+D I +EV ++ DIR +E+R++TD
Sbjct: 558 SVIPKATKIFVNGVWVGIHRDPQTLVETLRAMRRQVD-ISTEVGVVHDIRLQELRLYTDY 616
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW 632
GR CRPL I E+ ++ +KKR I NL+ R+ + WQ ++++G +EY+D EEETTMIAM+
Sbjct: 617 GRCCRPLFIVEDQAVKVKKRDIINLQNREETGFTWQSMIEAGYIEYVDVEEEETTMIAMF 676
>gi|347309788|gb|AEO79204.1| DNA-directed RNA polymerase II subunit, partial [Hymenolepis
microstoma]
Length = 793
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/496 (75%), Positives = 421/496 (84%), Gaps = 27/496 (5%)
Query: 172 KVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ-SLKKS 230
KVLIAQEKMATNTVYVF KDSKYAYKTEIRSCLEHSSRP STLWVNMMARGG+ S K++
Sbjct: 1 KVLIAQEKMATNTVYVFQQKDSKYAYKTEIRSCLEHSSRPASTLWVNMMARGGKDSNKRA 60
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
IGQRI+AILPYIKQEIP++IVFRALGFVADRDILEHIIYDFDD EM EM+KPSLDEAF
Sbjct: 61 TIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDNEMREMIKPSLDEAFC 120
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQ+Q VALNFIG+RGARPGVTKE+RIKYAREILQKE LPH+G+SDFC+T+KAYFLGYMVH
Sbjct: 121 IQDQKVALNFIGSRGARPGVTKEKRIKYAREILQKETLPHIGISDFCDTRKAYFLGYMVH 180
Query: 351 ---------------------RL-----LLASLGRRELDDRDHYVRMYAQKFIDRGKDFN 384
RL LLA L R + +R+YAQKF+D+GKDF
Sbjct: 181 RLLLTALRRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLTKEIRLYAQKFVDKGKDFG 240
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
LE AI++ IITDGL+YSLATGNWGDQKKA+QAR GVSQVLNRLTFAS+LSHLRR+NSPIG
Sbjct: 241 LESAIRSGIITDGLKYSLATGNWGDQKKANQARPGVSQVLNRLTFASTLSHLRRLNSPIG 300
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
RDGKLA+PRQLHNTLWGMICPAETPEG+AVGLVKNLALMAYISVGSQPSPILEFLEEWSM
Sbjct: 301 RDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 360
Query: 505 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR 564
ENLEE+APSAI + KIFVNGCWVGIH P+ LM TLRKLRRQ+D+IVSEVS++RD RD+
Sbjct: 361 ENLEEVAPSAIGKSCKIFVNGCWVGIHNSPDNLMVTLRKLRRQVDVIVSEVSMVRDYRDQ 420
Query: 565 EIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEE 624
EIRI+TDAGRICRPL+I E G+L+LKK+HI L + + +GWQ LV SGVVEYIDT+EE
Sbjct: 421 EIRIYTDAGRICRPLIIVEKGNLMLKKKHIKYLTDTHLSRFGWQELVLSGVVEYIDTMEE 480
Query: 625 ETTMIAMWQVLVQSGV 640
ETTMIAM +Q+ V
Sbjct: 481 ETTMIAMGPSEMQAAV 496
>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
Length = 1210
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/684 (56%), Positives = 487/684 (71%), Gaps = 59/684 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L QE CW VI++YF+E L RQQL SFDEF+Q ++Q IV+D + L AQHT + +
Sbjct: 12 LTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDY 71
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ----- 115
RY + F QIYLS+PT E DGS + M P EARLRNLTYS+PLYVD+ K V+R
Sbjct: 72 TRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMRAQDSNV 131
Query: 116 --GEEPVTTQHQ-----KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
GEE T+ + K FIGKIPIMLRST+C+LNG++D +L +LNECP D GGYFIIN
Sbjct: 132 PIGEEIWLTEEEDDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 169 GSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKV+IAQE+ A N V VF S AY EIRS LE SR S++ + +MAR ++
Sbjct: 192 GSEKVIIAQERSAANIVQVFRKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARSTEN- 250
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
GQ I A LPYI+ +IPI++VFRALG V DRDILEHI YD +D +M+EM+KP ++E
Sbjct: 251 ----SGQTIKATLPYIRSDIPIVVVFRALGVVPDRDILEHICYDPNDLQMLEMMKPCIEE 306
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ+++VAL++IG RG+ GVT+E+R++YA +ILQKEMLPH+ + ET+KA+FLGY
Sbjct: 307 AFVIQDKDVALDYIGKRGSTTGVTREKRLRYAHDILQKEMLPHITTLEGFETRKAFFLGY 366
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MVHR+LL +L RRE DDRDH+ V Y QK ++ +
Sbjct: 367 MVHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFKKMTRDVYKYMQKCVETNR 426
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K+ IT+GLRYSLATGNWGDQK+ R GVSQVLNR TFAS+LSHLRR N+
Sbjct: 427 EFNLTLAVKSNTITNGLRYSLATGNWGDQKRGLANRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+Y+SVGS +PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W ME+LE+ PSA +ATK+FVNG W+G+HRDP L TLR LRR++D I +EVSI+RDI
Sbjct: 547 WGMESLEDYNPSASPNATKVFVNGIWLGVHRDPVHLTETLRSLRRRLD-ISAEVSIVRDI 605
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDN-LKERDY------NNYGW 607
R++E+R+ TDAGRICRPL I +N G L ++K HI L++RD +GW
Sbjct: 606 REKELRLFTDAGRICRPLFIVDNDSNSDTKGELCIRKEHIQQLLEDRDRFDINAEQRFGW 665
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
L+ SG++EY+D EEET MIAM
Sbjct: 666 SSLIASGLIEYLDAEEEETVMIAM 689
>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
C-169]
Length = 1170
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/665 (58%), Positives = 483/665 (72%), Gaps = 41/665 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE W VI+A+F+ KGLVRQQLDSF+EFI ++Q IV++ + ++ E+QH E
Sbjct: 17 ITQEDAWAVISAFFEAKGLVRQQLDSFNEFINSNMQEIVDEYGTLLVKPESQHNPGMAEL 76
Query: 61 PPR-YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ---G 116
+ Y ++F QIYLSKPT E DG + P EARLRNLTY+APLY+DI KTV+ + G
Sbjct: 77 EEKEYKVEFGQIYLSKPTMTEADGETVVLFPKEARLRNLTYAAPLYIDIKKTVITRVPNG 136
Query: 117 E-EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
E E + K FIG++PIMLRS+YC L+ T++ LT+L ECP D GGYF++NGSEKVLI
Sbjct: 137 EAETEEESYPKIFIGEVPIMLRSSYCSLHERTNQQLTQLGECPYDQGGYFVVNGSEKVLI 196
Query: 176 AQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+MA N VYVF + SKYAY+ E RS +E+S+R TS++ + M+AR G GQ
Sbjct: 197 AQERMANNQVYVFRKSQPSKYAYQAECRSVVENSTRNTSSMSIRMLARSG-----GKGGQ 251
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
I A LPYI+ +IPI+I+FRALG AD+DIL+H++YDF+D MME ++PS++EAF IQ Q
Sbjct: 252 AIRATLPYIRADIPILIIFRALGLTADKDILQHVVYDFNDTAMMEALRPSIEEAFPIQTQ 311
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
VAL+FIG RG+ PGVT+E+RI YAR+ILQ+EMLPHV + +F ETKKAYF GYMVHRLLL
Sbjct: 312 EVALDFIGKRGSNPGVTREKRIHYARDILQREMLPHVAIGEFSETKKAYFFGYMVHRLLL 371
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
+LGRR+ DDRDHY VR + QK +DRGK+ NL A
Sbjct: 372 VALGRRDQDDRDHYCNKRLDLGGPLLANLFRQLFRKLTKDVRSHVQKAVDRGKEINLMAA 431
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
+ IT GLRYS+ATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR++SPIGR+GK
Sbjct: 432 VNKDTITRGLRYSIATGNWGMQGTAGM-RAGVSQVLNRLTYASTLSHLRRISSPIGREGK 490
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
LAKPRQLHN+ WG+ICPAETPEG A GLVKNLALM+Y+SVG +PI EFLEEWS ENLE
Sbjct: 491 LAKPRQLHNSQWGVICPAETPEGQACGLVKNLALMSYVSVGCPSAPIGEFLEEWSTENLE 550
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
EI PS I +ATK+FVNG WVGIHR P L+ TLRK+RRQ+D I +EV I+ DIR +E+R+
Sbjct: 551 EINPSVILEATKVFVNGVWVGIHRQPAVLVNTLRKMRRQVD-ISTEVGIVHDIRLQELRL 609
Query: 569 HTDAGRICRPLLIA--ENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEET 626
+TD GR CRPL I + L + K I L+ER+ ++GW LV G +EYIDT EEET
Sbjct: 610 YTDYGRCCRPLFIVDPDRKRLTITKDDIRQLQEREVTHFGWNELVHKGCIEYIDTEEEET 669
Query: 627 TMIAM 631
TMIAM
Sbjct: 670 TMIAM 674
>gi|328870070|gb|EGG18445.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1565
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/667 (59%), Positives = 489/667 (73%), Gaps = 57/667 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT--STEVET 60
QE W VI++YF EKGLVRQQLDSFDEFIQ ++Q I+++SP I L+ E QH ++
Sbjct: 21 QEDAWTVISSYFQEKGLVRQQLDSFDEFIQNTMQDIIDESPPITLKPETQHQPGQSQAHN 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---E 117
+ +KF QIYLSKPT + DG + PN+AR+RNLTYSAPLYVDITKT+ + E
Sbjct: 81 YTTFSIKFGQIYLSKPTS-DIDGLTQSITPNQARIRNLTYSAPLYVDITKTLTTKQSVEE 139
Query: 118 EPVTTQHQKSFIGKIPIMLRSTYCLLNG---LTDRDLTELNECPLDPGGYFIINGSEKVL 174
E + +K FIGK+PIMLRS YC+L+G +D DL + ECP D GGYF+INGSEKVL
Sbjct: 140 EAL----EKIFIGKVPIMLRSKYCILSGDGDTSDTDLAMMGECPFDQGGYFVINGSEKVL 195
Query: 175 IAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+ N VYVF SKY+Y EIRSC E SRPTST++V M L+KS+ G
Sbjct: 196 IAQEKMSHNHVYVFKKTPPSKYSYVAEIRSCQETGSRPTSTMYVKM-------LQKSSKG 248
Query: 234 -QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
I A +PYIK ++PI+++FRALGFVAD+DILEHI YDF D ++M++++PSL+E+FVIQ
Sbjct: 249 PSGIKATIPYIKMDVPIVVIFRALGFVADKDILEHICYDFSDAQLMDLMRPSLEESFVIQ 308
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q VAL+++G RG+ G T++ RIK+ARE+LQKEMLPHV V ++ ETKKAY+ GY+VHRL
Sbjct: 309 NQEVALDYLGKRGSTVG-TRDHRIKFAREVLQKEMLPHVSVEEYFETKKAYYFGYIVHRL 367
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
LLA+L RR LDDRDH+ VRM+ Q+ ID+GK+F
Sbjct: 368 LLAALERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRMWLQRCIDKGKEFTPI 427
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQ-ARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
AIK K IT GL+YSLATGNWG AH ARAGV+QVLNRLTFAS+LSHLRR+N+PIGR
Sbjct: 428 SAIKPKTITSGLKYSLATGNWG---AAHSGARAGVAQVLNRLTFASTLSHLRRLNTPIGR 484
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHNT WG++CP+ETPEG A GLVKNLA+MAYISVGS PILEFLEEWS E
Sbjct: 485 EGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMAYISVGSASEPILEFLEEWSTE 544
Query: 506 NLEEIA-PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR 564
NLEEI PS+I +ATKIFVNG WVGI++ P+ L+ TLR LR D+ V EVSI+RDIR++
Sbjct: 545 NLEEITDPSSILNATKIFVNGMWVGINKQPDHLLKTLRTLRGCGDVSV-EVSIVRDIREK 603
Query: 565 EIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEE 624
EIR++TDAGR CRPL + + LL+KK HI NL +Y W L+ SG++EYIDT EE
Sbjct: 604 EIRLYTDAGRCCRPLFVVRDSKLLIKKSHIQNLIVNP--DYKWMDLITSGLIEYIDTEEE 661
Query: 625 ETTMIAM 631
ET MI M
Sbjct: 662 ETVMIGM 668
>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Loxodonta africana]
Length = 1010
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/445 (83%), Positives = 397/445 (89%), Gaps = 26/445 (5%)
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
KKSAIGQRI+A LPYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDE
Sbjct: 84 KKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE 143
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQEQNVALNFIG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGY
Sbjct: 144 AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGY 203
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MVHRLLLA+LGRRELDDRDHY VR+YAQKFIDRGK
Sbjct: 204 MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK 263
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
DFNLELAIKT+II+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NS
Sbjct: 264 DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS 323
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEE
Sbjct: 324 PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE 383
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
WSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDI
Sbjct: 384 WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI 443
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
R+REIRI+TDAGRICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDT
Sbjct: 444 REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDT 503
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDT 646
LEEET M+AM +Q V Y T
Sbjct: 504 LEEETVMLAMTPDDLQEKEVAYCST 528
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/61 (88%), Positives = 57/61 (93%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 P 61
P
Sbjct: 81 P 81
>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces
pombe]
Length = 1210
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/685 (55%), Positives = 483/685 (70%), Gaps = 61/685 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L QE CW VI+++F+E L RQQL SFDEF+Q ++Q IV+D + L AQHT + +
Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDV 71
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY + F QIYLS+PT E DGS + M P EARLRNLTYS+PLYVD+ K V+ + V
Sbjct: 72 TRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNV 131
Query: 121 ------------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
+ K FIGKIPIMLRST+C+LNG++D +L +LNECP D GGYFIIN
Sbjct: 132 PIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKV+IAQE+ A N V VF S AY EIRS LE SR S++ + +MAR ++
Sbjct: 192 GSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTEN- 250
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
GQ I A LPYI+ +IPI+IVFRALG V DRDILEHI YD +D +M+EM+KP ++E
Sbjct: 251 ----SGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEE 306
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ++++AL++IG RG+ GVT+E+R++YA +ILQKE+LPH+ + ET+KA+FLGY
Sbjct: 307 AFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGY 366
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HR+LL +L RRE DDRDH+ V Y QK ++ +
Sbjct: 367 MIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNR 426
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K+ IIT+GLRYSLATGNWGDQK++ R GVSQVLNR TFAS+LSHLRR N+
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+Y+SVGS +PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E LE+ PSA +ATK+FVNG W+G+HRDP L TLR LRR++D I +EVSI+RDI
Sbjct: 547 WGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLD-ISAEVSIVRDI 605
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNY--------G 606
R++E+R+ TDAGRICRPL I +N G L ++K HI L E D + Y G
Sbjct: 606 REKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIE-DKDRYDIDPEQRFG 664
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W LV SG++EY+D EEET MIAM
Sbjct: 665 WTALVSSGLIEYLDAEEEETVMIAM 689
>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
972h-]
gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 138 kDa polypeptide
gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
Length = 1210
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/685 (55%), Positives = 483/685 (70%), Gaps = 61/685 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L QE CW VI+++F+E L RQQL SFDEF+Q ++Q IV+D + L AQHT + +
Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDV 71
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY + F QIYLS+PT E DGS + M P EARLRNLTYS+PLYVD+ K V+ + V
Sbjct: 72 TRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNV 131
Query: 121 ------------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
+ K FIGKIPIMLRST+C+LNG++D +L +LNECP D GGYFIIN
Sbjct: 132 PIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKV+IAQE+ A N V VF S AY EIRS LE SR S++ + +MAR ++
Sbjct: 192 GSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTEN- 250
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
GQ I A LPYI+ +IPI+IVFRALG V DRDILEHI YD +D +M+EM+KP ++E
Sbjct: 251 ----SGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEE 306
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ++++AL++IG RG+ GVT+E+R++YA +ILQKE+LPH+ + ET+KA+FLGY
Sbjct: 307 AFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGY 366
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HR+LL +L RRE DDRDH+ V Y QK ++ +
Sbjct: 367 MIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNR 426
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K+ IIT+GLRYSLATGNWGDQK++ R GVSQVLNR TFAS+LSHLRR N+
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+Y+SVGS +PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E LE+ PSA +ATK+FVNG W+G+HRDP L TLR LRR++D I +EVSI+RDI
Sbjct: 547 WGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLD-ISAEVSIVRDI 605
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNY--------G 606
R++E+R+ TDAGRICRPL I +N G L ++K HI L E D + Y G
Sbjct: 606 REKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIE-DKDRYDIDPEQRFG 664
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W LV SG++EY+D EEET MIAM
Sbjct: 665 WTALVSSGLIEYLDAEEEETVMIAM 689
>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
Length = 1178
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/672 (56%), Positives = 482/672 (71%), Gaps = 47/672 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEV-- 58
+ QE W VI+++F+EKGL RQQLDSF+EFIQ ++Q IV++ ++ E QH E
Sbjct: 14 IGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPEEQHMPGEEAD 73
Query: 59 -ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
+ +Y ++F+QIYLSKP E DG S + P EARLRNLTYSAPLY+D+ K+ + +
Sbjct: 74 GKGKKKYKVEFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYIDMAKSTITTTD 133
Query: 118 EPVTT-----------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
E T ++ K F GK+PIMLRS YC L+ TD++LTEL ECP D GGYFI
Sbjct: 134 EIDATTGKYIETIDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFI 193
Query: 167 INGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
INGSEKVLIAQEKM+TN VYVF + SKY + E RS E +R S+ + G
Sbjct: 194 INGSEKVLIAQEKMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGT 253
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
+ I +PYI+ EIP+ +VFRALGFVAD+DILEH++YDF+D EMM++++ S+
Sbjct: 254 KDEAGVIS----VTIPYIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSI 309
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
+EA VIQ Q+VAL+FIG RG+ GVT+ +RI+YAREILQKE+LPHVGV++ CETKKAYFL
Sbjct: 310 EEAQVIQSQDVALDFIGKRGSAVGVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFL 369
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GY+V+RLLL +LGR++ DDRDH+ VR+Y+Q+ ID
Sbjct: 370 GYIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRKVTKDVRLYSQRCIDS 429
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
GKD L LA+K K IT GL+YSLATGNWG Q A RAGVSQVLNRL+F+S+LSHLRR+
Sbjct: 430 GKDIQLTLAVKAKTITSGLKYSLATGNWGAQG-AQDIRAGVSQVLNRLSFSSTLSHLRRL 488
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG AVGLVKNL+LM +SVGS +P+LEFL
Sbjct: 489 NSPIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSVGSPSAPLLEFL 548
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EEWSMENLEEI+PS I +ATKIFVNG WVG+HR+P QL+ TLR LRR++DI + EV ++
Sbjct: 549 EEWSMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTLRNLRRKLDITI-EVGVVH 607
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYI 619
DI RE+R++TD GR RPL I E+ L++KK+ I L E++ Y W LV +G +EY+
Sbjct: 608 DIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLYEKEITGYTWNDLVATGCIEYV 667
Query: 620 DTLEEETTMIAM 631
DT EEETTMIAM
Sbjct: 668 DTEEEETTMIAM 679
>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
bisporus H97]
Length = 1183
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/673 (55%), Positives = 486/673 (72%), Gaps = 50/673 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++F++KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT E +
Sbjct: 34 QEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHETDMTR 93
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY +KF QIYLS+PT E DGS P+ P EARLRNLTYSAPLY+++ K V+ E+P T
Sbjct: 94 RYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGREDPDTA 153
Query: 123 QH--------------QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
K +IGK+PIMLRST+C+L GL D+DL +LNECP D GGYFIIN
Sbjct: 154 GEIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIIN 213
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R
Sbjct: 214 GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN---- 269
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
++ ++G + A +PYIK +IPI +VFR LG ++DRDILEHI YD D +M+EM+KP +D+
Sbjct: 270 QERSLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDD 329
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GY
Sbjct: 330 GFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGY 389
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLLA+L RRELDDRDH+ V Y QK ++ K
Sbjct: 390 MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHK 449
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+
Sbjct: 450 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 509
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEE
Sbjct: 510 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 569
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E+LEE A S + TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDI
Sbjct: 570 WGLESLEENAHST-SPCTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDI 627
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEY 618
R++E+RI+TDAGR+CRPL I EN LLL KRHI ++ + + N Y W+ L++ GV+E
Sbjct: 628 REKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIEL 687
Query: 619 IDTLEEETTMIAM 631
+D EEET MI+M
Sbjct: 688 LDAEEEETVMISM 700
>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1220
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/673 (55%), Positives = 486/673 (72%), Gaps = 50/673 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++F++KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT E +
Sbjct: 28 QEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHETDMTR 87
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT- 121
RY +KF QIYLS+PT E DGS P+ P EARLRNLTYSAPLY+++ K V+ E+P T
Sbjct: 88 RYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGREDPDTP 147
Query: 122 -------------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
K +IGK+PIMLRST+C+L GL D+DL +LNECP D GGYFIIN
Sbjct: 148 GEIAWEAEKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIIN 207
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R
Sbjct: 208 GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN---- 263
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
++ ++G + A +PYIK +IPI +VFR LG ++DRDILEHI YD D +M+EM+KP +D+
Sbjct: 264 QERSLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDD 323
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GY
Sbjct: 324 GFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGY 383
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLLA+L RRELDDRDH+ V Y QK ++ K
Sbjct: 384 MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHK 443
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+
Sbjct: 444 EFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 503
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEE
Sbjct: 504 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 563
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E+LEE A S + TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDI
Sbjct: 564 WGLESLEENAHST-SPCTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDI 621
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEY 618
R++E+RI+TDAGR+CRPL I EN LLL KRHI ++ + + N Y W+ L++ GV+E
Sbjct: 622 REKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIEL 681
Query: 619 IDTLEEETTMIAM 631
+D EEET MI+M
Sbjct: 682 LDAEEEETVMISM 694
>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1172
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/666 (57%), Positives = 480/666 (72%), Gaps = 41/666 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS-PQIDLQAEAQHT---ST 56
+ QE W VI+++F+EKGL RQQLDSF+EFIQ ++Q IV D +L+ E QH
Sbjct: 13 IGQEDAWTVISSFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQHVPGEEG 72
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
E Y + F+QIYLSKP E DG S + P EARLRNLTYSAPLYVD+ KTV
Sbjct: 73 EGGEKKTYKISFKQIYLSKPMVTEADGMTSTLFPKEARLRNLTYSAPLYVDMEKTVTTVT 132
Query: 117 EEPVTTQH----QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
+ T+ K FIGK+PIMLRS YC L+ TD++LTEL ECP D GGYFIINGSEK
Sbjct: 133 LDSQKTEEVEKINKVFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFIINGSEK 192
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM++N VYVF + SKY + E RS E +R S M+ G ++
Sbjct: 193 VLIAQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESGARAASACVARMLHSPGTKMEPGC 252
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
I R+ LPYI+ +IP+ +VFRALGFVAD+DILEHI+YDF+D + ME+++PS++EA I
Sbjct: 253 I--RVT--LPYIRTDIPLFVVFRALGFVADKDILEHIVYDFNDHDAMELLRPSIEEALPI 308
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q + VAL++IG RG+ GV++E+RIKYA++ILQKE+LPHVGV + CET+KAY+LGY+VHR
Sbjct: 309 QSKKVALDYIGKRGSAVGVSREKRIKYAQDILQKELLPHVGVDEECETRKAYYLGYIVHR 368
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDH+ VR+Y Q+ +D GK+ L
Sbjct: 369 LLLCALGRRNEDDRDHFGNKRMDLAGPLIAILFRQLFRKLTKDVRLYCQRCVDSGKEIQL 428
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
LA+K K IT GL+YSLATGNWG Q A RAGVSQVLNRL+F+S+LSHLRR+NSPIGR
Sbjct: 429 TLAVKAKTITSGLKYSLATGNWGAQG-AQDIRAGVSQVLNRLSFSSTLSHLRRLNSPIGR 487
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNL+LMA +SVGS SP+LEFLEEW+ME
Sbjct: 488 EGKLAKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMALVSVGSPSSPVLEFLEEWTME 547
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
NLEEI+PS I+ ATKIFVNG WVG+HRDP L+ TLR+LRR++D I +EV I+ DIR +E
Sbjct: 548 NLEEISPSVISHATKIFVNGVWVGVHRDPADLVRTLRELRRKVD-ITTEVGIVHDIRLQE 606
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEE 625
+R++TD GR RPL I E+ + +KKR+I+ L+E+D + W LV SG +EY+DT EEE
Sbjct: 607 LRLYTDYGRCIRPLFIVEDQRMKIKKRNIEMLQEKDITGFTWNDLVSSGCIEYVDTEEEE 666
Query: 626 TTMIAM 631
TTMI+M
Sbjct: 667 TTMISM 672
>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1209
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/675 (55%), Positives = 489/675 (72%), Gaps = 52/675 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++F++KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT E +
Sbjct: 13 QEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHESDMTR 72
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY +KF QIYLS+PT E DGS P+ P EARLRNLTYSAPLY+++ K V+ +P
Sbjct: 73 RYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMKKRVLIGHSDPNGG 132
Query: 123 Q--------HQKS-------FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
Q H++S +IGK+PIMLRST+C+L GL D+DL +LNECP D GGYFII
Sbjct: 133 QGDILWDAEHEESPEDTTKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFII 192
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R
Sbjct: 193 NGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN--- 249
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
++ ++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D
Sbjct: 250 -QERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCID 308
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
+ FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF G
Sbjct: 309 DGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFG 368
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM+HRLLLA+L RRELDDRDH+ V Y QK ++
Sbjct: 369 YMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETH 428
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
K+FNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N
Sbjct: 429 KEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCN 488
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLE
Sbjct: 489 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLE 548
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E+LEE A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RD
Sbjct: 549 EWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRD 606
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGVV 616
IR+RE+R++TDAGR+CRPL I EN L L+K+HI L ++ D Y W+ LV+SG++
Sbjct: 607 IRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHLVKSGII 666
Query: 617 EYIDTLEEETTMIAM 631
E +D EEET MI+M
Sbjct: 667 ELLDAEEEETVMISM 681
>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
delicata TFB-10046 SS5]
Length = 1217
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/673 (55%), Positives = 486/673 (72%), Gaps = 51/673 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW +I+++F+EKGLVRQQLDSFDEF+Q ++Q +V+++ ++ L QHT E +
Sbjct: 26 QEDCWTIISSFFEEKGLVRQQLDSFDEFVQNTMQELVDENAELILHQGDQHTGQEGDANL 85
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT- 121
R+ +KF QIYLS+PT E DGS +P+ P EARLRNLTYSAPLYV++ ++ + G E +T
Sbjct: 86 RHEIKFGQIYLSRPTITEADGSVTPVFPQEARLRNLTYSAPLYVEMRRSRL-TGRESMTK 144
Query: 122 -------------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
T QK +IGK+PIMLRS++C+L L+DRDL +LNECP D GGYFIIN
Sbjct: 145 PGDYDWQRDPNESTTMQKIWIGKVPIMLRSSFCILKTLSDRDLYDLNECPYDQGGYFIIN 204
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+MA N VYVF+ + S + EIRS +E + S+ V M R
Sbjct: 205 GSEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRSAVEKGGKTISSFQVKMFHRN---- 260
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
++ G I A +PYIKQ+IPI IVFRALG ++DRDILEHI YD D M+EM+KP +DE
Sbjct: 261 QEKTSGNTIKATIPYIKQDIPIWIVFRALGVMSDRDILEHICYDMHDVTMLEMLKPCIDE 320
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQE+ AL+FIG RG G+ KERR++YA+EILQKEMLPH+ +++ E+KKAYFLGY
Sbjct: 321 GFVIQEREQALSFIGVRGTTTGLNKERRLRYAQEILQKEMLPHISMAEGSESKKAYFLGY 380
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLLA+L RRELDDRDH+ V Y QK ++ K
Sbjct: 381 MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRYLQKCVEARK 440
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K IT+GL+YSLATGNWGDQKK+ A+AGVSQVLNR TFAS+LSHLRR N+
Sbjct: 441 EFNLSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRTNT 500
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS +P++EFLEE
Sbjct: 501 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEE 560
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E+LEE A S + +TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDI
Sbjct: 561 WGLESLEENAHSGVP-STKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDI 618
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHID---NLKERDYNNYGWQVLVQSGVVEY 618
R++E+R++TDAGR+CRPL I E+ L++KK H++ N ++ Y W L+++GV+E
Sbjct: 619 REKELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKEDESGAPYKWDNLIKTGVIEL 678
Query: 619 IDTLEEETTMIAM 631
+D EEET MI M
Sbjct: 679 LDAEEEETVMICM 691
>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
edodes]
Length = 1228
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/674 (54%), Positives = 488/674 (72%), Gaps = 50/674 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++F++KGLVRQQLDSFDEF+Q ++Q +V+++ + L + QH+ E +
Sbjct: 34 QEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQQDQHSGREGDMTR 93
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY ++F QIYLS+PT E DGS P+ P EARLRNLTYSAPLY+++ K V+ E+P
Sbjct: 94 RYEIRFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMKKKVMVGREDPDGV 153
Query: 123 ---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
K +IGK+PIMLRST+C+L GL D+DL +LNECP D GGYFII
Sbjct: 154 PGDMAWETENDDGPENSTKVWIGKVPIMLRSTFCILRGLADQDLYDLNECPYDSGGYFII 213
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M RG
Sbjct: 214 NGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRG--- 270
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
++ A+G + A +PYIK +IPI +VFR LG ++DRDILEHI YD D +M+EM+KP +D
Sbjct: 271 -QERAMGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCID 329
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E FVIQ++ VAL+FIG RG G+++E+RI+YA+EILQKEMLPHV +++ E+KKA+F G
Sbjct: 330 EGFVIQDREVALDFIGNRGTTTGLSREKRIRYAQEILQKEMLPHVSMAEGSESKKAFFFG 389
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM+HRLLLA+L RRELDDRDH+ V Y QK ++
Sbjct: 390 YMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYMQKCVETH 449
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
K+FNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N
Sbjct: 450 KEFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCN 509
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLE
Sbjct: 510 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLE 569
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E+LEE A S+ TK+FVNG W+G+HR+P L+ T+RKLRR+ D I EVS++RD
Sbjct: 570 EWGLESLEENAHSSTPTMTKVFVNGVWMGVHREPANLVKTIRKLRRK-DDISPEVSVVRD 628
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHID---NLKERDYNNYGWQVLVQSGVVE 617
IR+RE+R++TDAGR+CRPL I EN L+L+K+HI N + + + + W+ LV++G+VE
Sbjct: 629 IRERELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLLNGQNDEGSEFKWEHLVKNGIVE 688
Query: 618 YIDTLEEETTMIAM 631
+D EEET MI+M
Sbjct: 689 LLDAEEEETVMISM 702
>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 1228
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/676 (55%), Positives = 492/676 (72%), Gaps = 53/676 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++FD+KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT E +
Sbjct: 31 QEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHETDMTR 90
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP--- 119
RY + F QIYLS+PT E DGS P+ P EARLRNLTYSAPLY+D+ K V+ E+P
Sbjct: 91 RYEIHFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIDMKKRVLTGREDPDMP 150
Query: 120 --VT-------TQHQ---KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
VT +++Q K +IGK+PIMLRST+C+L L D+DL +LNECP D GGYFII
Sbjct: 151 GEVTWIPEDPDSENQEGTKVWIGKVPIMLRSTFCILRELQDQDLYDLNECPYDSGGYFII 210
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V M R
Sbjct: 211 NGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMFHRS--- 267
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
++ ++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D
Sbjct: 268 -QERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCID 326
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
+ FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +S+ E+KKAYF G
Sbjct: 327 DGFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFG 386
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM+HRLLLA++ RRELDDRDH+ V Y QK ++
Sbjct: 387 YMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETH 446
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
K+FN+ LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N
Sbjct: 447 KEFNISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCN 506
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLE
Sbjct: 507 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLE 566
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E+LEE A S+ A TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RD
Sbjct: 567 EWGLESLEENAHSSAA-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRD 624
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKE--RDYN---NYGWQVLVQSGV 615
IR+RE+R++TDAGR+CRPL I E+ LLL+K+HI L + RD + + W LV+ GV
Sbjct: 625 IRERELRLYTDAGRVCRPLFIVEDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQLVKGGV 684
Query: 616 VEYIDTLEEETTMIAM 631
+E +D EEET MIAM
Sbjct: 685 IELLDAEEEETVMIAM 700
>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit
[Schizophyllum commune H4-8]
gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit
[Schizophyllum commune H4-8]
Length = 1204
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/672 (54%), Positives = 484/672 (72%), Gaps = 50/672 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI+++FDEKGLVRQQLDSFDEFIQ ++Q +V+++P++ L QHT +
Sbjct: 13 ITQEDCWTVISSFFDEKGLVRQQLDSFDEFIQNTMQELVDENPELILDQAEQHTGHNFDQ 72
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR------ 114
R+ ++F QIYLS+PT E DGS P+ P EARLRNLTY+APLY+++ + +
Sbjct: 73 SKRFEIQFGQIYLSRPTITEADGSVVPVFPQEARLRNLTYAAPLYIEMRQKTLHATDELD 132
Query: 115 QGEEPV--------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
+ EP+ QK IGK+PIMLRS +C+LN L+D+++ +LNECP D GGYFI
Sbjct: 133 EAGEPIWRTVKEDEGNAVQKVHIGKVPIMLRSAFCILNKLSDQEIYDLNECPYDSGGYFI 192
Query: 167 INGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
INGSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R
Sbjct: 193 INGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHR--- 249
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
K+ ++G I A +PYIK +IPI +VFRAL ++DRDIL+HI Y+ DP+M+E++KP +
Sbjct: 250 -TKERSMGNVIKATIPYIKVDIPIWVVFRALNVISDRDILDHICYESTDPQMLELLKPCI 308
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
D+ FVIQE+ VAL+FIG RG G+ +ERR++YA+EILQKE+LPHV +++ E+KKAYF
Sbjct: 309 DDGFVIQEREVALDFIGNRGTTTGLNRERRVRYAQEILQKELLPHVSMAEGSESKKAYFF 368
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GYMVHRLLLA+L RRELDDRDH+ V Y QK ++
Sbjct: 369 GYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYRYLQKCVES 428
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
KDFNL LAIK I+ GL+YSLATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR
Sbjct: 429 NKDFNLNLAIKHHTISQGLKYSLATGNWGDQKKAGAAKAGVSQVLNRYTYASTLSHLRRC 488
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISVGS +P+++FL
Sbjct: 489 NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSISAPVIDFL 548
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
+EW++E+LEE A S+ A TK+FVNG W+G+HRDP +L+ T+R+LRR+ D I EVS++R
Sbjct: 549 QEWNLESLEENARSSEATFTKVFVNGVWMGVHRDPAKLVETIRRLRRK-DDISQEVSVVR 607
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYI 619
DIR++E+R++TDAGR+CRPL I EN SLLL+K H+ L + W LV+ G++E +
Sbjct: 608 DIREKELRVYTDAGRVCRPLFIVENQSLLLEKHHVHALTQ----GAKWDSLVKQGIIELL 663
Query: 620 DTLEEETTMIAM 631
D EEET MIAM
Sbjct: 664 DAEEEETVMIAM 675
>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
ATCC 30864]
Length = 1729
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/672 (56%), Positives = 477/672 (70%), Gaps = 44/672 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE W+VI ++F KGLVRQQLDSFD+FI +++ ++ + ++L+ E Q +
Sbjct: 33 ITQEDTWVVIRSFFKNKGLVRQQLDSFDDFISLTIPELISEQGTLELKVERQFLDADEVA 92
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRY++ F+ I++S PT E DG + PNEARLRNLTY+ LYV++ + + R E V
Sbjct: 93 PPRYVVSFDNIFISHPTITESDGYNHALFPNEARLRNLTYACRLYVNLKREMFRYDENGV 152
Query: 121 TTQHQ-----KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
+ K ++G+IP+MLRS C L D +L ++NECP D GGYF+INGSEKVLI
Sbjct: 153 EEPPEVKILDKVYLGQIPMMLRSKNCALFNKKDYELEKMNECPYDQGGYFVINGSEKVLI 212
Query: 176 AQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+MA N VYVF K +KY+Y EIRS LE RP +TL+ M+ RG QS +SA G
Sbjct: 213 AQERMANNNVYVFHRKPPAKYSYVAEIRSALETGHRPANTLYTKMLTRG-QSKGESA-GN 270
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
RI LPYIK +IPI++VFRALGFV+DRD+L+H+IYD+ D EMMEM++ SL+EA IQEQ
Sbjct: 271 RIQCTLPYIKTDIPIVVVFRALGFVSDRDVLDHVIYDYQDQEMMEMLRFSLEEALPIQEQ 330
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
VAL+FIG RG G T+E RI+YA+EILQKE+LPHVGV+D ETKKAYF GY+VHRLL
Sbjct: 331 PVALDFIGKRGLVQGATRENRIRYAKEILQKELLPHVGVTDHSETKKAYFFGYIVHRLLQ 390
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
A+LGRRELDDRDHY V+ QK +D+ +FNL A
Sbjct: 391 AALGRRELDDRDHYGNKRCDLAGALVGGLFRLLFRKLIKDVKASLQKDVDKRHEFNLLAA 450
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
K KII+DGLRYSLATGNWGD KKAH++RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GK
Sbjct: 451 FKAKIISDGLRYSLATGNWGDAKKAHESRAGVSQVLNRLTYASTLSHLRRLNSPIGREGK 510
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
LAKPRQL NT WG++CPAETPEG A GLVKNLALMAYISVGS I+EFLEEW+ ENLE
Sbjct: 511 LAKPRQLQNTQWGVMCPAETPEGQACGLVKNLALMAYISVGSPALHIIEFLEEWATENLE 570
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
E P +I +TKIFVNGCWVGIH +L+ TL +LR++ D I E+SI+ DIR+RE+RI
Sbjct: 571 ETTPQSILQSTKIFVNGCWVGIHAQANELVRTLAQLRQRTD-ISPEISIVPDIRERELRI 629
Query: 569 HTDAGRICRPLLIAENGSLLLKKRHIDNLK---------ERDYNNYGWQVLVQSGVVEYI 619
++DAGR RPL + E+ L +++ HID LK E N W L+ +GV+EYI
Sbjct: 630 YSDAGRAMRPLFVVEDERLSIRREHIDALKQAAQADRAGEHIDNPMRWPELITTGVIEYI 689
Query: 620 DTLEEETTMIAM 631
DT EEET MIAM
Sbjct: 690 DTQEEETRMIAM 701
>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
Length = 1174
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/675 (55%), Positives = 489/675 (72%), Gaps = 51/675 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI+++F+EKGLVRQQLDSFD FIQ ++Q +V++ Q+ LQ+ +Q + E +
Sbjct: 3 ITQENCWQVISSFFEEKGLVRQQLDSFDSFIQNTMQELVDEHSQLVLQSNSQFSGQEGDV 62
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV-------- 112
R++++F Q+YLSKP H EKDG +P++P+ ARLRNLTY+APLY+DI KT
Sbjct: 63 TRRHVIQFGQVYLSKPLHTEKDGMSTPLLPSMARLRNLTYAAPLYIDIKKTTYVADPNHE 122
Query: 113 VRQGEEPVTTQH---------QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 163
+ QG V H ++ F+GK+P+M++S+YC L+ ++ +L + ECP D GG
Sbjct: 123 LNQGIVNVNEMHLEQEDEVMYERIFLGKVPLMVKSSYCALSSSSNHELMGMGECPYDQGG 182
Query: 164 YFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMAR 222
YFIINGSEKVLIAQE+MA N VYVF+ S Y+Y EIRS +E + S ++V M++R
Sbjct: 183 YFIINGSEKVLIAQERMANNQVYVFAKSPPSPYSYTAEIRSAVERGGKNASAVFVKMLSR 242
Query: 223 GGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 282
K GQ I +PYIKQ+IPI IVFRALG VAD+DIL HI+YD +D +M++++K
Sbjct: 243 LAD---KGTSGQYIRCQIPYIKQDIPIGIVFRALGVVADKDILSHIVYDPEDTQMLDLLK 299
Query: 283 PSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKA 342
P ++EAF IQ+QNVAL+FIG RG GV +E+RIKYAREILQKE LPHVGV + E+KKA
Sbjct: 300 PCIEEAFTIQDQNVALDFIGKRGTTVGVRREQRIKYAREILQKEFLPHVGVEEHSESKKA 359
Query: 343 YFLGYMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKF 376
+F GYM++RLL +L RRELDDRDH+ + Y QK
Sbjct: 360 FFFGYMINRLLQCALERRELDDRDHFAKKRLDLAGPLLGGLFRMLFRKLTTDVGKYLQKC 419
Query: 377 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHL 436
I+ G++FNL LA+K +IIT GL+YS+ATGNWGDQ KA RAGVSQVLNR T+ S+LSHL
Sbjct: 420 INEGREFNLPLAVKHQIITSGLKYSIATGNWGDQSKAMSTRAGVSQVLNRYTYISTLSHL 479
Query: 437 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 496
RR N+PIGR+GKLAKPRQLHN+ +GM+CPAE+PEG A GLVKNLALMAY+SVGS SP+L
Sbjct: 480 RRCNAPIGREGKLAKPRQLHNSQFGMVCPAESPEGQACGLVKNLALMAYVSVGSPTSPVL 539
Query: 497 EFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
EFLEEW+MENL ++ PS I ATK+FVNG WVGIHRDP+ L L++LRR +D + EVS
Sbjct: 540 EFLEEWAMENLADVNPSFIGGATKVFVNGVWVGIHRDPDMLAENLKQLRRSLD-LSQEVS 598
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
I+RD RDRE+R++TD+GR+CRPL I ++G+L+L K H+ L++++ GW L+ GVV
Sbjct: 599 IVRDYRDRELRLYTDSGRVCRPLFIVKDGALVLTKNHVRLLEKKE---IGWNQLLADGVV 655
Query: 617 EYIDTLEEETTMIAM 631
EYIDT EEET +I+M
Sbjct: 656 EYIDTEEEETALISM 670
>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
versicolor FP-101664 SS1]
Length = 1231
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/679 (54%), Positives = 489/679 (72%), Gaps = 56/679 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++FD+KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT E +
Sbjct: 33 QEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHESDVTR 92
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT- 121
RY +KF QIYLS+PT E DGS P+ P EARLRNLTYSAPLY+++ K V+ E+P +
Sbjct: 93 RYEIKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYIEMKKRVLLGREDPDSA 152
Query: 122 -------TQH-------QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
T+H +K +IGK+PIMLRST+C+L+GL D +L +LNECP D GGYFII
Sbjct: 153 TGDMVWETEHDDNPEDTRKVWIGKVPIMLRSTFCILHGLEDDELYDLNECPYDSGGYFII 212
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V + R
Sbjct: 213 NGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRS--- 269
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
++ ++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D
Sbjct: 270 -QERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCID 328
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E FVIQ++ +AL++IG RG G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF G
Sbjct: 329 EGFVIQDREIALDYIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFG 388
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM+HRLLLA+L RR+LDDRDH+ V Y QK ++
Sbjct: 389 YMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETH 448
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
K+F L LA+K IT+GL+YSLATGNWGDQKK ++AGVSQVLNR T+AS+LSHLRR N
Sbjct: 449 KEFQLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCN 508
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISVGS +P++EFLE
Sbjct: 509 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLE 568
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E+LEE A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I +EVS++RD
Sbjct: 569 EWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISAEVSVVRD 626
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLK------ERDYNN--YGWQVLVQ 612
IR+RE+R++TDAGR+CRPL I EN LLL+K+HI+NL E+D Y W L++
Sbjct: 627 IRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLARGKEEPEKDATKFEYKWDNLIK 686
Query: 613 SGVVEYIDTLEEETTMIAM 631
GV+E +D EEET MI M
Sbjct: 687 DGVIELLDAEEEETVMICM 705
>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 1169
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/668 (58%), Positives = 492/668 (73%), Gaps = 48/668 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ QE W VI+AYF EKGLVRQQLDSFDEFIQ ++Q I+++SP I L+ EAQH + +
Sbjct: 18 ITQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPEAQHHPGQTQI 77
Query: 60 --TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
T + +KF QIYLSKPT E DG + PN+AR+RNLTYSAPL+VDITKTV+ +
Sbjct: 78 QNTVSTFSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGPK 136
Query: 118 EPVTTQH------QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSE 171
+ Q ++ FIGK+PIMLRS YC+L TDRDLT + ECP D GGYF+INGSE
Sbjct: 137 GKIEEQRRNDELLKRVFIGKVPIMLRSQYCMLYEATDRDLTTMGECPFDQGGYFVINGSE 196
Query: 172 KVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQEKM N VYVF SKY+Y EIRSC E SRPTST+++ M+ + K
Sbjct: 197 KVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKML----HNTNKG 252
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+G I A +PYIKQ++P++IVFRALGFVAD+DILEHI YDF+D +MM++++PSL+E+FV
Sbjct: 253 PVG--IKATIPYIKQDVPVIIVFRALGFVADKDILEHICYDFNDAQMMDLMRPSLEESFV 310
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQ Q VAL+++G RG+ G T+E+RIK+ARE+LQKEMLPHV V++F ETKKA++ GY+VH
Sbjct: 311 IQSQEVALDYLGKRGSTIG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYIVH 369
Query: 351 RLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFN 384
RLLLASL RR LDDRDH+ VR+Y Q+ ID+ K+F
Sbjct: 370 RLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFI 429
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
A+K+K IT GL+YSLATGNWG K ++GV+QVLNRLTFAS+LSHLRR+N+PIG
Sbjct: 430 PSSAVKSKTITSGLKYSLATGNWGSSKSG-GTKSGVAQVLNRLTFASTLSHLRRLNTPIG 488
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
R+GKLAKPRQLHNT WG++CP+ETPEG A GLVKNL++M+YISVGS PILEFLEEW+
Sbjct: 489 REGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLSMMSYISVGSASQPILEFLEEWTT 548
Query: 505 ENLEEIAP-SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ENLEEI+ S+I ATKIFVNG WVGIH P++L+GTLR LRR D+ V EVS++RDIR+
Sbjct: 549 ENLEEISDLSSIFTATKIFVNGMWVGIHHQPDKLLGTLRLLRRCGDVSV-EVSVVRDIRE 607
Query: 564 REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLE 623
+E+R++TD GR CRPL + ++ L +KK HI L + + Y WQ L+ G++EYID E
Sbjct: 608 KELRLYTDPGRCCRPLFVVQDNKLQVKKHHISKLIN-NSDEYKWQDLLNEGIIEYIDAEE 666
Query: 624 EETTMIAM 631
EET +IAM
Sbjct: 667 EETVLIAM 674
>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 1170
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/670 (58%), Positives = 491/670 (73%), Gaps = 54/670 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH------T 54
+ QE W VI+AYF EKGLVRQQLDSFDEFIQ ++Q I+++SP I L+ E+QH
Sbjct: 18 ISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVV 77
Query: 55 STEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV- 113
S V T + +KF QIYLSKPT E DG + PN+AR+RNLTYSAPL+VDITKTV+
Sbjct: 78 SNNVST---FSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMT 133
Query: 114 ---RQGEEPVTTQHQKS-FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
+G+E T + K FIGK+PIMLRS YC+LN DRDLT + EC D GGYFIING
Sbjct: 134 GSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIING 193
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQEKM N VYVF SKY+Y EIRSC E SRPTST+++ M+ +
Sbjct: 194 SEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKML----HNTN 249
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K +G I A +PYIKQ++P++IVFRALGFVAD+DILEHI YDF D +MM++++PSL+E+
Sbjct: 250 KGPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEES 307
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ Q VAL+++G RG+ G T+E+RIK+ARE+LQKEMLPHV V++F ETKKA++ GY+
Sbjct: 308 FVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYI 366
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
HRLLLASL RR LDDRDH+ VR+Y Q+ ID+ K+
Sbjct: 367 THRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKE 426
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
F A+K+K IT GL+YSLATGNWG K ++GV+QVLNRLTFAS+LSHLRR+N+P
Sbjct: 427 FIASSAVKSKTITSGLKYSLATGNWGSSKSG-GTKSGVAQVLNRLTFASTLSHLRRLNTP 485
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GKLAKPRQLHNT WG++CP+ETPEG A GLVKNLA+M+YISVGS PILEFLEEW
Sbjct: 486 IGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEW 545
Query: 503 SMENLEEIAP-SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ ENLEEI+ S+I ATKIFVNG WVGIH P++L+ TLR LRR D+ V EVS++RDI
Sbjct: 546 TTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSV-EVSVVRDI 604
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
R++E+R++TD GR CRPL + ++ + +KK+HI+ L D Y WQ L+ G+VEYID
Sbjct: 605 REKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND--EYKWQDLLSEGIVEYIDA 662
Query: 622 LEEETTMIAM 631
EEET +IAM
Sbjct: 663 EEEETVLIAM 672
>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
50818]
Length = 1193
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/679 (56%), Positives = 484/679 (71%), Gaps = 53/679 (7%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
W + CW VINAYF+EKGLVRQQLDSFD FIQ +Q VE SP ++++A+ Q+T+ E E P
Sbjct: 18 WPQGCWDVINAYFNEKGLVRQQLDSFDHFIQYGIQDAVEKSPALEIEAKPQYTTNEFEEP 77
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR-QGEEPV 120
P Y +KF ++ LSKPTH+E+DG+ + PN+ARLRNLTY + ++V+ +T Q EP
Sbjct: 78 PSYSVKFCEVSLSKPTHYEEDGTSHFLYPNDARLRNLTYWSEMFVEAEETYRETQDSEPE 137
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TT +GKIPIMLRS +CLLNG + DL LNECPLDPGGYFIINGSEKVL+AQEKM
Sbjct: 138 TTT-TSVHLGKIPIMLRSKFCLLNGKLNDDLYNLNECPLDPGGYFIINGSEKVLLAQEKM 196
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
A NTV+VF KD KY + TEI+S LE S RP S+L V ++ RG QS +S G + L
Sbjct: 197 APNTVFVFEKKDPKYLFVTEIKSVLERSPRPPSSLLVKLL-RGSQSAARS--GPVLHVTL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PY++Q++P+++VFRALGF DR ILEHIIYDF+D EMMEM+KPSLDEAFVIQ ++VAL++
Sbjct: 254 PYVRQDVPVVVVFRALGFEDDRSILEHIIYDFNDMEMMEMLKPSLDEAFVIQNRDVALDW 313
Query: 301 IGARGAR-PGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
IG R + P ++KERRI YA++ILQKE+LPH+G+ CETKKA+FLGYMVHR L A+L R
Sbjct: 314 IGKRAVQSPAISKERRIHYAKDILQKELLPHIGLGPHCETKKAFFLGYMVHRTLQAALRR 373
Query: 360 RELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKI 393
R+LDDRDHY +R Y QK ++R ++ L + +K
Sbjct: 374 RQLDDRDHYGNKRLDMSGPLTGFLFRTLFRNVTKELRSYIQKKLNRSEEIKLSAGLNSKQ 433
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
I GLRYS ATGNWG Q KA +ARAGVSQVLNRLTFAS+LSHLRR+NSPI R GK+AKPR
Sbjct: 434 IESGLRYSFATGNWGTQAKAFEARAGVSQVLNRLTFASTLSHLRRLNSPIERTGKIAKPR 493
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP- 512
QLHNT WG ICPAETPEG AVGLVKNLALMA ++VG +P+LE L ME+L+++A
Sbjct: 494 QLHNTHWGYICPAETPEGHAVGLVKNLALMASVTVGGDATPVLELLNSIGMESLDDLASR 553
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR-QMDIIVSEVSIIRDIRDREIRIHTD 571
S I D TKIFVNG WVGIH +PE+++ L RR Q D+I SEVSI RDIR+REI +++D
Sbjct: 554 SVIRDTTKIFVNGAWVGIHMEPEEVVRNLHLCRRTQADMIQSEVSIFRDIREREIHVYSD 613
Query: 572 AGRICRPLLIAE--------------NGSLLLKKRHIDNLKERDYNN-----YGWQVLVQ 612
+GR+ RPLLI E +L LKK+H++ L+ N Y W LV+
Sbjct: 614 SGRLTRPLLIVEKPELDDTFHDGTQQQQTLALKKQHLEKLQSAAMQNAFEATYSWSDLVR 673
Query: 613 SGVVEYIDTLEEETTMIAM 631
G+VEYID EE+TTMIAM
Sbjct: 674 EGLVEYIDVNEEDTTMIAM 692
>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1222
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/673 (54%), Positives = 485/673 (72%), Gaps = 50/673 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++FD+KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT +
Sbjct: 31 QEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGQAGDMTR 90
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT- 121
RY +KF QIYLS+PT E DGS P+ P EARLRNLTYSAPLY+++ K V+ E+P
Sbjct: 91 RYEIKFGQIYLSRPTVTEADGSVVPVFPQEARLRNLTYSAPLYIEMRKRVLVGREDPAVP 150
Query: 122 ------TQHQ-------KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
+H+ K +IGK+PIMLRS++C+L+ L D+DL +LNECP D GGYFIIN
Sbjct: 151 GDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSGGYFIIN 210
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R
Sbjct: 211 GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVERGGKTISQFQVKMFHRN---- 266
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
++ ++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+
Sbjct: 267 QERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDD 326
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FIG RG G+ ++RRI+YA+EILQKEMLPH+ +++ E+KKAYF GY
Sbjct: 327 GFVIQDREVALDFIGNRGTTTGLPRDRRIRYAQEILQKEMLPHISMAEGSESKKAYFFGY 386
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLLA+L RRELDDRDH+ V Y QK ++ K
Sbjct: 387 MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHK 446
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+
Sbjct: 447 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNT 506
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS +P++EFLEE
Sbjct: 507 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEE 566
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E+LEE A S TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDI
Sbjct: 567 WGLESLEENAHSTTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDI 624
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEY 618
R+RE+R++TDAGR+CRPL I EN L+L+K+H+ N + D + W+ L++SG+VE
Sbjct: 625 RERELRLYTDAGRVCRPLFIVENQQLVLQKKHVRWLANSENDDGEEWKWENLIKSGIVEL 684
Query: 619 IDTLEEETTMIAM 631
+D EEET MI M
Sbjct: 685 LDAEEEETVMICM 697
>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
disseminatus]
Length = 1241
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/673 (55%), Positives = 486/673 (72%), Gaps = 50/673 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI ++FD+KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT + +
Sbjct: 49 QEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHDTDMTR 108
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV-- 120
RY +KF QIYLS+PT E DGS P+ P EARLRNLTYS+PLYV++ K V+ E+P
Sbjct: 109 RYEIKFGQIYLSRPTVTEADGSVFPLFPQEARLRNLTYSSPLYVEMKKRVLIGREDPDGV 168
Query: 121 ------------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
T + +K +IGK+PIMLRS++C+L+ L D +L +LNECP D GGYFIIN
Sbjct: 169 PGDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYDSGGYFIIN 228
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R
Sbjct: 229 GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN---- 284
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
++ ++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+
Sbjct: 285 QERSMGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDD 344
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPH+ +++ E+KKAYF GY
Sbjct: 345 GFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHISMAEGSESKKAYFFGY 404
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLLA+L RRELDDRDH+ V Y QK ++ K
Sbjct: 405 MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVETHK 464
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K + IT+GL+YSLATGNWGDQKK ++AGVSQVLNR T+AS+LSHLRR N+
Sbjct: 465 EFNLTLAVKQQTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYASTLSHLRRCNT 524
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEE
Sbjct: 525 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 584
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E+LEE A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDI
Sbjct: 585 WGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDI 642
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN---YGWQVLVQSGVVEY 618
R+RE+R++TDAGR+CRPL I EN LLL+K+HI L + + Y W+ L++SGV+E
Sbjct: 643 RERELRLYTDAGRVCRPLFIVENQQLLLQKKHIGWLNDGVDDQGEPYKWENLIKSGVIEL 702
Query: 619 IDTLEEETTMIAM 631
+D EEET MI+M
Sbjct: 703 LDAEEEETVMISM 715
>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
Length = 1226
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/674 (54%), Positives = 488/674 (72%), Gaps = 51/674 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++F++KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT + +
Sbjct: 33 QEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQSDQHTGHDGDVNR 92
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT- 121
RY +KF QIYLS+PT E DGS +P+ P EARLRNLTYSAPLY+++ K V+ E+P +
Sbjct: 93 RYEIKFGQIYLSRPTVTEADGSVAPVFPQEARLRNLTYSAPLYIEMKKRVLVGREDPDSL 152
Query: 122 -------TQHQ-------KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
+H+ K +IGK+PIMLRS++C+L+GL D D+ +LNECP D GGYFII
Sbjct: 153 TGDMTWEPEHEENPEDTRKVWIGKVPIMLRSSFCILHGLVDEDVYDLNECPFDSGGYFII 212
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V + R
Sbjct: 213 NGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQFQVKLFHRN--- 269
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
++ ++G + A +PYI+ +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D
Sbjct: 270 -QERSLGNVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCID 328
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
+ FVIQ++ VAL+FIG RG G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF G
Sbjct: 329 DGFVIQDREVALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFG 388
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM+HRLLLA++ RR+LDDRDH+ V Y QK ++
Sbjct: 389 YMIHRLLLAAMERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETH 448
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
K+FNL LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N
Sbjct: 449 KEFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCN 508
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISVGS +P++EFLE
Sbjct: 509 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLE 568
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E+LEE A SA TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RD
Sbjct: 569 EWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRD 626
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKE--RDYN-NYGWQVLVQSGVVE 617
IR+RE+R++TDAGR+CRPL I EN LLL K+HI L + D N Y W L++ GV+E
Sbjct: 627 IRERELRLYTDAGRVCRPLFIVENQQLLLTKKHIKYLNDGVDDQNEQYKWDQLIKGGVIE 686
Query: 618 YIDTLEEETTMIAM 631
+D EEET MI+M
Sbjct: 687 LLDAEEEETVMISM 700
>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 1222
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/675 (54%), Positives = 488/675 (72%), Gaps = 54/675 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI ++FD+KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT + +
Sbjct: 31 QEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHDGDVTR 90
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---------- 112
RY +KF QIYLS+PT E DG+ P+ P EARLRNLTYSAPLY+++ K +
Sbjct: 91 RYEIKFGQIYLSRPTVTEADGAVVPVFPQEARLRNLTYSAPLYIEMKKRILIGREDQEGS 150
Query: 113 ------VRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
V++ ++P T+ K +IGK+PIMLRSTYC+L+ L D++L +LNECP D GGYFI
Sbjct: 151 GDMVWEVQRDDDPEDTR--KVWIGKVPIMLRSTYCILHELGDKELFDLNECPYDSGGYFI 208
Query: 167 INGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
INGSEKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V + R
Sbjct: 209 INGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRS-- 266
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
++ ++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +
Sbjct: 267 --QERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCI 324
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
DE FVIQ++ +AL++IG RG G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF
Sbjct: 325 DEGFVIQDREIALDYIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFF 384
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GYM+HRLLLA+L RR+LDDRDH+ V Y QK ++
Sbjct: 385 GYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET 444
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
K+FN+ LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR
Sbjct: 445 HKEFNISLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRC 504
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISVG+ +P++EFL
Sbjct: 505 NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFL 564
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EEW +E+LEE A A TK+FVNG W+G+HRDP +L+ TLRKLRR+ D I EVS++R
Sbjct: 565 EEWGLESLEENA-HASTPCTKVFVNGVWMGVHRDPVKLVSTLRKLRRK-DDINCEVSVVR 622
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNYGWQVLVQSGVV 616
DIR+RE+R++TDAGR+CRPL I EN LL++K+HI++L K+ NY W L++ GV+
Sbjct: 623 DIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRAKDDPTFNYNWDSLLKDGVI 682
Query: 617 EYIDTLEEETTMIAM 631
E +D EEET MI M
Sbjct: 683 ELLDAEEEETVMICM 697
>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1198
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/678 (54%), Positives = 479/678 (70%), Gaps = 56/678 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++FDEKGLVRQQ+DSFDEF+Q ++Q IVE++ ++ L Q+T + +T
Sbjct: 4 QEDCWTVISSFFDEKGLVRQQIDSFDEFVQNTMQEIVEENQKLTLDQFNQYTQHKNDTTR 63
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT- 121
RY ++F QIYLS+PT E DGS SPM P+EARLRNLTYSAP+Y+D+ K V+ Q E+ T
Sbjct: 64 RYEIQFGQIYLSRPTMTEADGSVSPMFPHEARLRNLTYSAPIYIDMKKRVLVQVEDDETG 123
Query: 122 ------------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
+ K +IGK+PIML+ST+C LN + L+ELNECP D GGYFIING
Sbjct: 124 DLIWVPEFDEEHDETTKVWIGKVPIMLKSTFCNLNNVDSARLSELNECPFDQGGYFIING 183
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE++A N VY+F+ + S +Y+ EIRS +E + S++ + M R +
Sbjct: 184 SEKVLIAQERLAANHVYIFAKAEPSPVSYQAEIRSAMEKGGKTVSSMQIKMFRRP----Q 239
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+A + A +PYIK EIPI+IVFRALG V DR+ILEHI +DFDD +M++++KP ++EA
Sbjct: 240 GNAQADTMRATIPYIKNEIPIIIVFRALGIVPDREILEHICFDFDDSQMLDLLKPCIEEA 299
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FV+Q+QNVAL+FIG RG G++K++RI+YA++ILQKEMLPHV ++ ETKKAYF GYM
Sbjct: 300 FVVQDQNVALDFIGRRGTTTGLSKDKRIRYAKDILQKEMLPHVATNEGSETKKAYFFGYM 359
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRL+LA L RRELDDRDH+ V Y QK ++ K+
Sbjct: 360 IHRLMLARLERRELDDRDHFGKKRLDLGGPLLASLFRMLFRKLTKDVYRYMQKCVETHKE 419
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL A+K IT+GL+YSLATGNWGDQKK QARAGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 420 FNLNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRCNTP 479
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA +S GS +PI +FL+EW
Sbjct: 480 IGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVSTGSSSAPIQDFLQEW 539
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LEE P ++ K+FVNG W+G+HRDP L+ TLRKLRR+ D I EVS++RD+R
Sbjct: 540 GMEELEEFNPR--SNQVKVFVNGVWIGVHRDPTNLVKTLRKLRREGD-IQHEVSVVRDVR 596
Query: 563 DREIRIHTDAGRICRPLLIA--ENGSLLLKKRHI------DNLKERDYNN-YGWQVLVQS 613
++EI++ TDAGR+CRPL + E L + K HI N ++ D + Y W L+
Sbjct: 597 EKEIKVFTDAGRVCRPLFLVDEETQQLEINKSHIAKIEAHTNGEDEDPDQPYNWAKLMSD 656
Query: 614 GVVEYIDTLEEETTMIAM 631
GV+E +D EEET MI M
Sbjct: 657 GVMELLDAEEEETVMICM 674
>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 1247
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/700 (53%), Positives = 489/700 (69%), Gaps = 53/700 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI+++FD+KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT + +
Sbjct: 32 ITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGSATDM 91
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP- 119
RY +KF QIYLS+PT E DGS P+ P EARLRNLTY+APLY+++ K + E+P
Sbjct: 92 TRRYEIKFGQIYLSRPTVTEADGSVMPVFPQEARLRNLTYNAPLYIEMRKRTLIGREDPE 151
Query: 120 --------------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+K +IGK+PIMLRST+C+L+ + + DL +LNECP D GGYF
Sbjct: 152 GAPGDVIWQEEPGDAAEDSRKVWIGKVPIMLRSTFCILHDIPENDLFDLNECPYDSGGYF 211
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
IINGSEKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V M R
Sbjct: 212 IINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMYTRN- 270
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
++ ++G I A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP
Sbjct: 271 ---QERSLGNLIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPC 327
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
+ + F IQ++ +AL+FIG RG G++KERR++YA+EILQKEMLPHV +++ E+KKAYF
Sbjct: 328 IQDGFAIQDREIALDFIGNRGTTTGLSKERRLRYAQEILQKEMLPHVSMAEGSESKKAYF 387
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
GYM+HRLLLA+L RRELDDRDH+ V Y QK I+
Sbjct: 388 FGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCIE 447
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
GK FNL LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR
Sbjct: 448 TGKQFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRR 507
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISVGS +P++EF
Sbjct: 508 CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSISAPVIEF 567
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW +E+LEE A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I E S++
Sbjct: 568 LEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPLNLVKTIKKLRRK-DDISPETSVV 625
Query: 559 RDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEY 618
RDIR+RE+RI TDAGR+CRPL I EN L+LKK HI+ L + + VL +G +
Sbjct: 626 RDIRERELRISTDAGRVCRPLFIVENQQLVLKKSHIEKLHKHNTE----PVLDDAGAPTF 681
Query: 619 IDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
D ++ + LV+ GV+EY+D EEET MI M+P
Sbjct: 682 -DENGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTP 720
>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1212
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/684 (55%), Positives = 481/684 (70%), Gaps = 62/684 (9%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT-------- 54
QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q +V+DS I + E QH
Sbjct: 28 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVGYDDEAY 87
Query: 55 --STEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV 112
E ET + + F Q+YLSKPT EKDG+ + M P+EARLRN+TYSAPLYVD+
Sbjct: 88 DREQEKETKFVFEIHFGQVYLSKPTTVEKDGTITNMFPHEARLRNMTYSAPLYVDVDLNQ 147
Query: 113 VRQGEE------------PVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPL 159
+ G E PV T+H +K F+G +PIMLRS +C+L+ D DL++L EC
Sbjct: 148 YQVGREVNVNDPSEDLGEPVATEHAKKEFLGYVPIMLRSLFCVLSDKDDADLSDLGECVY 207
Query: 160 DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVN 218
D GGYF+INGSEKV+IAQE+++ N VY F K SK+++ E RS +E+S+RP STL++
Sbjct: 208 DQGGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQ 267
Query: 219 MMARGGQSLKKSAI-GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 277
M +GG + AI G +I + LPYI+ +IP++I+FRALG+VADRDI+EH++YD D EM
Sbjct: 268 MYHKGG----RGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEM 323
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
M++ +PSL+EAFVIQ Q+VAL+FIG RG+ VTKE R++YA+ ILQKE+LPHVG + C
Sbjct: 324 MDLFRPSLEEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAILQKEVLPHVGTEEHC 383
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ETKK +F+GY VH+LL+ LGR E DDRDH+ VR
Sbjct: 384 ETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRK 443
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
+ Q+ +D GK FN+ AIK+ ITDGL+YSLATGNWGD+ A +AGVSQVLNRLT+AS
Sbjct: 444 HLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNWGDKGMA--TKAGVSQVLNRLTYAS 501
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
SLSHLRR N+P+ R GK AKPRQLHNT WGM+CPAETPEG AVGLVKNLALMAYI+ G+
Sbjct: 502 SLSHLRRCNTPLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYITTGTA 561
Query: 492 PSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMD 549
P+LEFLEE+S ENL +I PS IA + KIFVNG WVGIHRDP+ L T R LRR +D
Sbjct: 562 QVPVLEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKALEETFRSLRRMVD 621
Query: 550 IIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYN--NYGW 607
I +EVSI+RDI D+E+RI+TDAGRICRPL + + L +KK HI L+ D N W
Sbjct: 622 ID-AEVSIVRDIADKEVRIYTDAGRICRPLFVVQEQKLAIKKHHIMQLQGMDPNEKKLTW 680
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
L+ G+VEYIDT EEETTM+AM
Sbjct: 681 TDLLMEGLVEYIDTEEEETTMVAM 704
>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
sp. DJM-731 SS1]
Length = 1258
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/678 (54%), Positives = 482/678 (71%), Gaps = 53/678 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L QE CW +I ++F+EKGLVRQQLDSFDEF+Q S+Q +V++S ++ L QH+ E++
Sbjct: 57 LSQEDCWQIITSFFEEKGLVRQQLDSFDEFVQNSMQEVVDESGELILDQANQHSGRELDE 116
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP- 119
RY L F QIYLS+P+ E DGS P+ P EARLRNLTYSAPLY+D+ K V+ E P
Sbjct: 117 TKRYELSFGQIYLSRPSTMEPDGSNLPIFPQEARLRNLTYSAPLYIDVKKRVLSGRENPE 176
Query: 120 --------------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ K ++GK+P+MLRST+C+L+GL+D DL +LNECP D GGYF
Sbjct: 177 DVNGEMIWESQNTDADKEIHKIWVGKVPVMLRSTFCILSGLSDGDLYDLNECPYDQGGYF 236
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
IINGSEKVLIAQE+MA N VYVF+ + S ++ EIRS +E + S L + M R
Sbjct: 237 IINGSEKVLIAQERMAANHVYVFAKAQPSPISHLAEIRSQVEKGGKQISLLQIKMTHR-- 294
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+L+KS G + A LPYI+ +IP+++VFRALG V DRD+LEHI YD +D M+EM+KP
Sbjct: 295 -NLEKST-GSLMRAQLPYIRNDIPVVVVFRALGIVPDRDVLEHICYDPEDHAMLEMLKPC 352
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++EAFVIQ++ VAL++IG RG G+++++R++YA+EILQKEMLPH+ + E+KKAYF
Sbjct: 353 IEEAFVIQDREVALDYIGRRGTTTGLSRDKRLRYAQEILQKEMLPHISTQEGAESKKAYF 412
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
GYMVHRL+LA+L RRELDDRDH+ V Y QK ++
Sbjct: 413 FGYMVHRLVLAALDRRELDDRDHFGKKRLDLAGPLLATLFRMLFRRLTKDVYRYMQKCVE 472
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
++FN+ A+K IT+GL+YSLATGNWGDQKK QA+AGVSQVLNR TFAS+LSHLRR
Sbjct: 473 THREFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTLSHLRR 532
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+A+PRQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS P++EF
Sbjct: 533 TNTPIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSQPVVEF 592
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW +E L + I ATK+FVNG W+GIHR+P+ L+ T+R LRR D I SE+S++
Sbjct: 593 LEEWGLEPLGDQTNETIT-ATKVFVNGVWMGIHRNPQHLVETVRTLRRS-DGISSEISVV 650
Query: 559 RDIRDREIRIHTDAGRICRPLLIAENGS--LLLKKRHIDNLKER---DYNNYGWQVLVQS 613
RDIR+RE+R++TDAGR+CRPL I G+ L++ K+ I+ L+ R + YGW LV S
Sbjct: 651 RDIRERELRLYTDAGRVCRPLFIVNEGTQDLVIGKKEINCLQNRVDDEGQPYGWSQLVSS 710
Query: 614 GVVEYIDTLEEETTMIAM 631
G+VE +D EEET MIAM
Sbjct: 711 GMVELLDAEEEETVMIAM 728
>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
hirsutum FP-91666 SS1]
Length = 1230
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/675 (54%), Positives = 477/675 (70%), Gaps = 52/675 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++FDEKGLVRQQLDSFDEF+Q ++Q ++E++ + L QHT + +
Sbjct: 33 QEDCWTVISSFFDEKGLVRQQLDSFDEFVQNTMQELIEENADLILDQADQHTGHDNDVTR 92
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP--- 119
RY L F Q+YLS+ T E DGS P+ P EARLRNLTYS+PLYV++ + E+P
Sbjct: 93 RYELHFNQVYLSRATVTEADGSVVPVFPQEARLRNLTYSSPLYVEVARRFSVGREDPDGQ 152
Query: 120 -------------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
T + QK +IGK+P+MLRS +C+L+ L + +L +LNECP D GGYFI
Sbjct: 153 AGEINWEVEVDEISTKEFQKVWIGKLPLMLRSQFCILSELGENELYDLNECPYDSGGYFI 212
Query: 167 INGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
INGSEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R
Sbjct: 213 INGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYHRN-- 270
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
+ G I A +PYIK +IPI +VFRALG ++DRDILEHI YD +D +M+EM+KP +
Sbjct: 271 --QDKTSGNVIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMEDAQMLEMLKPCI 328
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
D+ FVIQ++ +AL+FIG RG G+++ERR++YA+EILQKEMLPH+ +S+ E+KKAYF
Sbjct: 329 DDGFVIQDREIALDFIGNRGTTTGLSRERRLRYAQEILQKEMLPHISMSEGSESKKAYFF 388
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GYM+HRLLLA++ RRELDDRDH+ V Y QK ++
Sbjct: 389 GYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVET 448
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
KDFNL LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR
Sbjct: 449 HKDFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRC 508
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISVGS P+++FL
Sbjct: 509 NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATISVGSLSLPVIDFL 568
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EEW +E+LEE A SA TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVSI+R
Sbjct: 569 EEWGLESLEENAHSATP-TTKVFVNGVWMGVHRDPANLIKTIKKLRRK-DDIHPEVSIVR 626
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN---YGWQVLVQSGVV 616
DIR+RE+R++TDAGR+CRPL + E+ L + K+HI+ L +N + W L++SGVV
Sbjct: 627 DIRERELRLYTDAGRVCRPLFVVEDQQLAVTKKHINMLTRGTDDNGEEFKWNNLIKSGVV 686
Query: 617 EYIDTLEEETTMIAM 631
EY+D EEET MI M
Sbjct: 687 EYLDAEEEETVMICM 701
>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
Length = 942
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/570 (64%), Positives = 438/570 (76%), Gaps = 35/570 (6%)
Query: 93 ARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTD 148
ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC L ++
Sbjct: 2 ARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 61
Query: 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEH 207
+DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+RS E
Sbjct: 62 KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES 121
Query: 208 SSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEH 267
+RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEH
Sbjct: 122 QNRPPSSMFVRMLSRA--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 179
Query: 268 IIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEM 327
I YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG GVTKE+RIKYA+EILQKEM
Sbjct: 180 ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGQTVGVTKEKRIKYAKEILQKEM 239
Query: 328 LPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------- 368
LPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 240 LPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRML 299
Query: 369 -------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 421
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVS
Sbjct: 300 FRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 358
Query: 422 QVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
QVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 359 QVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 418
Query: 482 LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTL 541
LM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+PE L+ TL
Sbjct: 419 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 478
Query: 542 RKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERD 601
R+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+HI +L++R+
Sbjct: 479 RQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKHIRSLQQRE 537
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ GW LV G +EY+DT EEETTMI+M
Sbjct: 538 TQDEGWHDLVAKGFIEYVDTEEEETTMISM 567
>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
B]
Length = 1242
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/703 (52%), Positives = 487/703 (69%), Gaps = 66/703 (9%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI+++F++KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT E +
Sbjct: 35 QEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHEADVTR 94
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP--- 119
RY +KF QIYLS+PT E DGS P+ P EAR RNLTYSAPLY++I K V+ E+P
Sbjct: 95 RYEIKFGQIYLSRPTVTEADGSVVPVFPQEARQRNLTYSAPLYIEIKKRVLIGREDPDSA 154
Query: 120 ------------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
K +IGK+PIMLRST+C+L+ + D +L +LNECP D GGYFII
Sbjct: 155 TGDILWEPEQRETAEDTTKVWIGKVPIMLRSTFCILHNVQDSELYDLNECPYDSGGYFII 214
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V + R
Sbjct: 215 NGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQFQVKLYHRN--- 271
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
++ ++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D
Sbjct: 272 -QERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCID 330
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
+ FVIQ++ VAL+FIG RG G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF G
Sbjct: 331 DGFVIQDREVALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFG 390
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM+HRLLLA+L RR+LDDRDH+ V Y QK ++
Sbjct: 391 YMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESH 450
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
K+FNL LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N
Sbjct: 451 KEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCN 510
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLE
Sbjct: 511 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIEFLE 570
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E+LEE A SA TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RD
Sbjct: 571 EWGLESLEENAHSATP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRD 628
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL-----KERDYNNYGWQVLVQSGV 615
IR+RE+RI+TDAGR+CRPL I E+ LLL K+HI L +E+ + G
Sbjct: 629 IRERELRIYTDAGRVCRPLFIVEDQQLLLTKKHISWLSRSKEEEKQRMSRG--------- 679
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ + E + W L++ GV+E +D EEET MI MSP
Sbjct: 680 ----EDKDAEGAYVYRWDNLIKDGVIELLDAEEEETVMICMSP 718
>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit
[Thalassiosira pseudonana CCMP1335]
gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1196
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/684 (55%), Positives = 481/684 (70%), Gaps = 62/684 (9%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH--------- 53
QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q +V+DS I + E QH
Sbjct: 10 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVGYDEANF 69
Query: 54 -TSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV 112
+ T + +KF Q+YLSKPT EKDG+ + M P+EARLRNLTY+APLYVD+T
Sbjct: 70 DETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTMNE 129
Query: 113 VRQGE------------EPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPL 159
R G EPV+T+ +K F+G +PIMLRS +C+L+ D L +L EC
Sbjct: 130 YRVGNDVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIY 189
Query: 160 DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVN 218
D GGYF+INGSEKV++AQE+M+ N VY F K SK+++ E RS +E+S+RPTSTL++
Sbjct: 190 DQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQ 249
Query: 219 MMARGGQSLKKSAI-GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 277
M +GG K AI G +I + LPYI+ +IP++I+FRALG+VADRDI+EH++YD D EM
Sbjct: 250 MYQKGG----KGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEM 305
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
M++ +PSL+EAFVIQ+Q VAL+FIG RG+ VTK+ RI+YA ILQKE+LPHVG + C
Sbjct: 306 MDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHC 365
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ETKK +FLGY VH+LL+ LGR + DDRDH+ VR
Sbjct: 366 ETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRK 425
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
+ Q+ +D GK FN+ AIK+ I+DGL+YSLATGNWGD K + ++AGVSQVLNRLT+AS
Sbjct: 426 HLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGD--KGNTSKAGVSQVLNRLTYAS 483
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
SLSHLRR N+P+ R GK AKPRQLHN+ WGM+CPAETPEG AVGLVKN+ALMAYI+ G+
Sbjct: 484 SLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITTGTS 543
Query: 492 PSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMD 549
P++EFLEE+S ENL +I PS IA + KIFVNG WVGIHRDP+QL+ T R LRR +D
Sbjct: 544 QVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRRMID 603
Query: 550 IIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLK--ERDYNNYGW 607
I +EVSI+RDI + E+RI+TDAGRICRPL I + L +KK HI L+ D W
Sbjct: 604 ID-AEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAIKKHHISQLQGVSPDQKKLTW 662
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
L+ G+VEY+DT EEETTMIAM
Sbjct: 663 TDLLMEGLVEYVDTEEEETTMIAM 686
>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
98AG31]
Length = 1257
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/689 (53%), Positives = 478/689 (69%), Gaps = 62/689 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI+A+F+E+ LV QQ+ SFD F+ ++Q +V+++ + L+ Q+T +
Sbjct: 41 ITQEDCWQVISAFFNERNLVSQQISSFDGFVNTTMQELVDETGSLILEQSMQYTDKAGDL 100
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT-VVRQGE-- 117
RY + F QIYLS+PT E DG+ SPM PNEARLRNLTYSAPLYVD++K+ V GE
Sbjct: 101 TKRYEISFGQIYLSRPTMTESDGTVSPMFPNEARLRNLTYSAPLYVDMSKSNKVATGEFD 160
Query: 118 ----EPV---------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGY 164
EP+ + +IGK+PIMLRS +C+L+ L DR L +LNECP D GGY
Sbjct: 161 EVTGEPIYISDDDDNPDKNSSQIYIGKVPIMLRSEFCILDKLDDRGLYDLNECPFDQGGY 220
Query: 165 FIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARG 223
F+INGSEKVLIAQE+MA N VYVF+ S ++ +EIRS +E S+ ST+ V M G
Sbjct: 221 FVINGSEKVLIAQERMAANHVYVFAKAAPSPISFLSEIRSAVEKGSKTVSTMQVKMF--G 278
Query: 224 GQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 283
G +K+ G I LPYI+ +IPI++VFRALG + D+DIL+HI YD +D +M EM+KP
Sbjct: 279 GHKAEKAGGGATIKTTLPYIRNDIPIVVVFRALGIIPDKDILDHICYDRNDIDMFEMLKP 338
Query: 284 SLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 343
L+++F IQEQ VAL+FIG RG G+++E+R+KYA EILQKEMLPH+ +S+ + KKAY
Sbjct: 339 CLEDSFPIQEQEVALDFIGRRGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGKKAY 398
Query: 344 FLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFI 377
F GYMVHRLLLA+L RR+LDDRDH+ V + QK +
Sbjct: 399 FFGYMVHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQKCV 458
Query: 378 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLR 437
+ K FNL A+K+ IT+GL+YSLATGNWGDQKKA QARAGVSQVLNR TFAS+LSHLR
Sbjct: 459 EMQKPFNLNTAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLR 518
Query: 438 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 497
R N+PIGRDGK+AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM+YISVGS +PI+E
Sbjct: 519 RCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVE 578
Query: 498 FLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSI 557
FLEEW ME+L+E + + +A TK+FVNG W G+HR P +L+ T+++LRR D I EVS+
Sbjct: 579 FLEEWGMESLDEFS-ADMATGTKVFVNGVWQGVHRSPAELLDTIKRLRRCGD-IEPEVSV 636
Query: 558 IRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLK---------------ERDY 602
+RD+R+RE+R+ TD GR+CRPL I EN LLL K H++ L E +
Sbjct: 637 VRDVRERELRVFTDGGRVCRPLFIVENQQLLLTKDHVEWLSNGYVTGTEDPNGIVPEDEG 696
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW LV G+VEY+D EEET MI M
Sbjct: 697 QPFGWSQLVAKGIVEYLDAEEEETVMICM 725
>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1237
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/702 (53%), Positives = 487/702 (69%), Gaps = 77/702 (10%)
Query: 6 CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYL 65
CW +I+++FD+KGLVRQQLDSFDEF+Q ++Q +V+++ + L QHT E + RY
Sbjct: 40 CWHIISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHEADVTRRYE 99
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT--- 122
+KF QIYLS+PT E DGS P+ P EARLRNLTYSAPLYV++ K + E+P +T
Sbjct: 100 IKFGQIYLSRPTVTEADGSVVPIFPQEARLRNLTYSAPLYVEMKKRTLVGREDPDSTTGD 159
Query: 123 -----QHQKS-------FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGS 170
+H +S +IGK+PIMLRST+C+LN LT +L +LNECP D GGYFIINGS
Sbjct: 160 LVWEQEHDESPEDTRKVWIGKVPIMLRSTFCILNKLTQEELFDLNECPYDSGGYFIINGS 219
Query: 171 EKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V + R ++
Sbjct: 220 EKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRN----QE 275
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
++G + A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ F
Sbjct: 276 RSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGF 335
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ +AL+FIG RG G+ +ERR++YA+EILQKEMLPH+ KAYF GYM+
Sbjct: 336 VIQDREIALDFIGNRGTTTGLNRERRLRYAQEILQKEMLPHI--------HKAYFFGYMI 387
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLLLA+L RR+LDDRDH+ V Y QK ++ K+F
Sbjct: 388 HRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEF 447
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL LA+K IT+GL+YSLATGNWGDQKK+ A+AGVSQVLNR T+AS+LSHLRR N+P+
Sbjct: 448 NLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPL 507
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISVGS +P++EFLEEW
Sbjct: 508 GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWG 567
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
+E+LEE A S TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+
Sbjct: 568 LESLEENAHSTTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRE 625
Query: 564 REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT-- 621
RE+R++TDAGR+CRPL I EN L L+K+HI+ W + SGV +Y D
Sbjct: 626 RELRLYTDAGRVCRPLFIVENNQLTLRKKHIE-----------W---IASGVPQYDDAGS 671
Query: 622 --LEEETTMIAM---WQVLVQSGVVEYIDTLEEETTMIAMSP 658
L+E+ T W LV+ GV+E +D EEET MI M+P
Sbjct: 672 RLLKEDGTYDNQPYEWSNLVKDGVIELLDAEEEETVMICMTP 713
>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
Length = 874
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/576 (63%), Positives = 440/576 (76%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ K FIGK+PIMLRS+YC L
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTL 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSRA--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+PE
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPEL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ ++ GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQQRESPDDGGWHDLVAKGFIEYVDTEEEETTMISM 576
>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1277
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/673 (55%), Positives = 476/673 (70%), Gaps = 55/673 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W+VI+AYF EKGLVRQQLDSFDEF+Q ++ +V + +I + E Q+ +
Sbjct: 105 QEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRR 164
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
+ + F Q+YL+KPT EKDGS + M P+EARLRNLTY++PLY DI+ + E V
Sbjct: 165 TFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDIS---CKTYEADVGD 221
Query: 123 QHQ---------------KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
+ Q K F+G +PIMLRS++C+L TD++LTEL EC D GGYF+I
Sbjct: 222 RSQEDGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVI 281
Query: 168 NGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIA E+M+TN VY F + SK+ + +EIRS +++S RP S++++ M A+G Q
Sbjct: 282 NGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQH 341
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
K + G I A LPYI+ ++P+++VFRALG+ D+ ILEHI+YDF D +MME +PSL+
Sbjct: 342 SKVN--GGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLE 399
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
EA VIQ Q VA +FIG RG+ V + RI YA+ +LQ+E LPHVG+ E KK +FLG
Sbjct: 400 EADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLG 459
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YMVH+LL+ SLGR E DDRDHY VR Y Q +D+G
Sbjct: 460 YMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKG 519
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
F + AIK++ ITDGL+YSLATGNWGD+K A +AGVSQVLNRLT+AS+LSHLRR+N
Sbjct: 520 TQFVVGTAIKSQFITDGLKYSLATGNWGDKKTA--TKAGVSQVLNRLTYASALSHLRRLN 577
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK AKPRQLHNT WG ICPAETPEG AVGLVKNLALMAYISVG SPILEFLE
Sbjct: 578 TPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLE 637
Query: 501 EWSMENLEEIAPSAIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
EW+MENL+EIAP IA + TK+FVNG WVG+HRDP +L+ TL RR +DI V EVS++
Sbjct: 638 EWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDV-EVSVV 696
Query: 559 RDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEY 618
RDI+ RE+R++TDAGR+CRPL + EN L ++K+HI++L + NYGW L+Q GVVEY
Sbjct: 697 RDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHD---PNYGWTNLMQQGVVEY 753
Query: 619 IDTLEEETTMIAM 631
IDT EEETTM+AM
Sbjct: 754 IDTEEEETTMVAM 766
>gi|402589898|gb|EJW83829.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 473
Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/450 (76%), Positives = 390/450 (86%), Gaps = 28/450 (6%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEFIQM+VQRIVEDSP ++LQ+E QH S +VE P
Sbjct: 24 WQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSGDVENP 83
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEA--RLRNLTYSAPLYVDITKTVVRQGEEP 119
++ LKF+QIYLSKPTHWEKDG+P+PMMPNEA RLRNLTYS+PLY+DITKT+ R GEEP
Sbjct: 84 IKFALKFDQIYLSKPTHWEKDGAPTPMMPNEAFARLRNLTYSSPLYIDITKTMTRIGEEP 143
Query: 120 VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
T+++K F+GKIPIMLRS+YC+L ++DRDL+ELNECPLDPGGYF+INGSEKVLIAQEK
Sbjct: 144 KETKYEKVFVGKIPIMLRSSYCMLANMSDRDLSELNECPLDPGGYFVINGSEKVLIAQEK 203
Query: 180 MATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
MATNTVYVFSMKD KY YKTE RSCLE+SSRPTSTLWVNM+ RGG KKSA+G +IIAI
Sbjct: 204 MATNTVYVFSMKDGKYTYKTECRSCLENSSRPTSTLWVNMLPRGGGGSKKSAMGPKIIAI 263
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
LPYIKQEIP+MIVFRALGFV+D DILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALN
Sbjct: 264 LPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALN 323
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
FIGARGA+PGVTKE+RIKYAREILQKEMLPHVG+SDFCETKKAYFLGYMVHRLLLA+LGR
Sbjct: 324 FIGARGAKPGVTKEQRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGR 383
Query: 360 RELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKI 393
RELDDRDH VR+ AQK+I++ DF L+L +KT +
Sbjct: 384 RELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNGDFMLDLCVKTPL 443
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQV 423
IT GL YSLATGNWGDQKKAHQ+RAGVSQV
Sbjct: 444 ITRGLAYSLATGNWGDQKKAHQSRAGVSQV 473
>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
Length = 873
Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/576 (63%), Positives = 440/576 (76%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540
Query: 597 LKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ + + GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQQRESHEDGGWHDLVAKGFIEYVDTEEEETTMISM 576
>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
Length = 873
Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/576 (63%), Positives = 438/576 (76%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ +K FIGK+PIMLRS+YC L
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFKKVFIGKVPIMLRSSYCTL 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSRA--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVTKE+RIKYAREI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAREI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVG+ ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I +TKIFVNGCWVGIHR+PE
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPEL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KKR I
Sbjct: 482 LVKTLRALRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+ R+ + GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQLRESPDEGGWHDLVAKGYIEYVDTEEEETTMISM 576
>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
Length = 865
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/571 (63%), Positives = 437/571 (76%), Gaps = 36/571 (6%)
Query: 93 ARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTD 148
ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC L ++
Sbjct: 2 ARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQEFAKVFIGKVPIMLRSSYCTLYQNSE 61
Query: 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEH 207
+DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+RS E
Sbjct: 62 KDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAES 121
Query: 208 SSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEH 267
+RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEH
Sbjct: 122 QNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEH 179
Query: 268 IIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEM 327
I YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EILQKEM
Sbjct: 180 ICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEILQKEM 239
Query: 328 LPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------- 368
LPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 240 LPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRML 299
Query: 369 -------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 421
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A RAGVS
Sbjct: 300 FRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVS 358
Query: 422 QVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
QVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLA
Sbjct: 359 QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 418
Query: 482 LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTL 541
LM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+PE L+ TL
Sbjct: 419 LMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPELLVKTL 478
Query: 542 RKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERD 601
R+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I L++R+
Sbjct: 479 RQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRE 537
Query: 602 YNNY-GWQVLVQSGVVEYIDTLEEETTMIAM 631
+ GW LV G +EY+DT EEETTMI+M
Sbjct: 538 SSEEGGWHDLVAKGFIEYVDTEEEETTMISM 568
>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
Length = 906
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/575 (62%), Positives = 436/575 (75%), Gaps = 35/575 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E+ +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAENQNRPPSSMFVRMLSRA--SSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVTKE+RIKYA+EI
Sbjct: 183 DILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVG ++CETKKAY+ GY++HRLLL ++GRR DDRDHY
Sbjct: 243 LQKEMLPHVGTGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K +T GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTVTSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR LRR++D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRLLRRRVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRV 540
Query: 597 LKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQQRETQEEGWHDLVAKGFIEYVDTEEEETTMISM 575
>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
Length = 873
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/576 (62%), Positives = 439/576 (76%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ + A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYVRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT++S+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ + GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQQRESPEDGGWHDLVAKGFIEYVDTEEEETTMISM 576
>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
Length = 951
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/576 (62%), Positives = 438/576 (76%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I +TKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KKR I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+ R+ + GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISM 576
>gi|68131856|gb|AAY85206.1| RNA polymerase II second largest subunit [Embothrium coccineum]
Length = 706
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/578 (62%), Positives = 440/578 (76%), Gaps = 36/578 (6%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC
Sbjct: 3 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
+ +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + ++YAY E
Sbjct: 63 TVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNRYAYVGE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVA
Sbjct: 123 VRSMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI YDF D +MM +++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMGLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAK 240
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 300
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 359
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A
Sbjct: 360 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQAC 419
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+P
Sbjct: 420 GLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNP 479
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHI 594
E L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I + LL+KK+ +
Sbjct: 480 ELLVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVDKQRLLIKKKDV 538
Query: 595 DNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ ++ GW LV G +EYIDT EEETTMI+M
Sbjct: 539 RALQQRESPDDGGWHDLVAKGFIEYIDTEEEETTMISM 576
>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
Length = 873
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/576 (62%), Positives = 437/576 (75%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNHQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ W M+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWXMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540
Query: 597 LKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ + GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQQRESHEEGGWHDLVAKGFIEYVDTEEEETTMISM 576
>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
Length = 875
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/577 (63%), Positives = 437/577 (75%), Gaps = 37/577 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC L
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECPLD GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YHNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E+ +RP ST++V M++R G K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAENQNRPPSTMFVRMLSRAGA--KGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVTKE+RIKYAREI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAREI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY+VHRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D+GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRGYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSP GR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPTGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENL-EEIAPSAIADATKIFVNGCWVGIHRDPE 535
VKNLALM YI+VGS PILEFLEEWS EN EEI+P+ I A KIFVNGCWVGIHRDP+
Sbjct: 422 VKNLALMVYITVGSAAYPILEFLEEWSTENFEEEISPAVIPQAAKIFVNGCWVGIHRDPD 481
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHID 595
L+ TLR+LRR++D + +EV ++RDI +E+RI+TD GR RPL I + LL+KKR I
Sbjct: 482 LLVKTLRQLRRRVD-VNTEVGVVRDIHLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIR 540
Query: 596 NLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+ R+ + GW LV G +EYIDT EEETTMI+M
Sbjct: 541 ALQLRETPEDGGWHDLVAKGFIEYIDTEEEETTMISM 577
>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
Length = 951
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/576 (62%), Positives = 437/576 (75%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S ++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSGMFVRMLSRA--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL ++GRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQQRESPEEGGWHDLVAKGYIEYVDTEEEETTMISM 576
>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
Length = 951
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/605 (60%), Positives = 444/605 (73%), Gaps = 36/605 (5%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ K FIG++PIMLRS+YC L
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVAETQDFTKVFIGRVPIMLRSSYCTL 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSRA--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYAREI
Sbjct: 183 DILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAREI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL ++GRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GK+ NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRGYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS PILEFLEEWS EN EEI+P+ I +TKIFVNGCWVGIHR+PE
Sbjct: 422 VKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPEL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDI +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIHLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIA 655
L+ R+ GW LV G +EY+DT EEETTMI+M + S V + E T
Sbjct: 541 LQLRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVSARVNPKEAYSETYTHCE 600
Query: 656 MSPRL 660
+ P L
Sbjct: 601 IHPSL 605
>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
Length = 1166
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/666 (55%), Positives = 468/666 (70%), Gaps = 39/666 (5%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
EACW VINAYF EKGLVRQQLDSFD FI +VQ+I+++SP I++Q Q+ S E+E PP+
Sbjct: 11 EACWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKNSPPIEVQGRLQYLSNEIEEPPK 70
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ + F Q + P H E+DG+ + PN+ RLRNLTY + + +IT TV ++ E
Sbjct: 71 HTISFGQAGFALPQHKEEDGNYDHVFPNDCRLRNLTYQSLMQCEITHTVEQKNPETGEVT 130
Query: 124 HQKSFIGKIPIMLRSTYCLLNGL-TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 182
+ +GK+P+MLRS YC LN + T RD ++NECPLDPGGYFIINGSEKVLIAQEKMA
Sbjct: 131 TTPALLGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEKVLIAQEKMAG 190
Query: 183 NTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARG-GQSLKKSAIGQRIIAILP 241
NTVYVF KDSK+ + TE+RS +E S+RPTST+ V M+ G G + ++ G+ I A LP
Sbjct: 191 NTVYVFEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKGRATFGRVIHASLP 250
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YI+Q+IP++++FRALGF DR ILEHIIYDFDD EMME++KPSLDEAFV+Q + VAL+ I
Sbjct: 251 YIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDEAFVVQTREVALDLI 310
Query: 302 GARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
G R A G++K+ R+++AR+ILQKEMLPH+GV CE KA+FLGYMVHR L A+L RR
Sbjct: 311 GRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYMVHRTLQAALRRR 370
Query: 361 ELDDRDHYVR----------------MYAQ----------KFIDRGKDFNLELAIKTKII 394
ELDDRDHY ++ Q ++R F + + +I+
Sbjct: 371 ELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRNHKFMVITLLDVEIL 430
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
GLRYSLATGNWGDQKKAH+ARAGVSQVLNRLTFAS+LSHLRR+NSPI R GK+AKPRQ
Sbjct: 431 GSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLNSPIDRTGKIAKPRQ 490
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI-APS 513
LHNT WG ICPAETPEG AVGLVKNL+LMA ++VGS +P+ + L ++ L+ + + S
Sbjct: 491 LHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLGASGLDYLDRLPSRS 550
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRK-LRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
AI ATK+FVNG WVGIH P++L+ T+R+ L + SEVSI R+IR+RE+ I TD+
Sbjct: 551 AIKTATKVFVNGNWVGIHSHPDELVTTMRQYLLDAAHSVASEVSIFRNIREREVHIVTDS 610
Query: 573 GRICRPLLI-----AENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
GR RPLLI A LK H+ L+ + W LVQ GVVEYID EEETT
Sbjct: 611 GRTTRPLLIVNKDDANRCRFALKNSHVMALRN---DQMSWTHLVQRGVVEYIDVNEEETT 667
Query: 628 MIAMWQ 633
MIAM Q
Sbjct: 668 MIAMDQ 673
>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
Length = 1197
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/674 (53%), Positives = 474/674 (70%), Gaps = 51/674 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI A+F+EKGLVRQQ+DSF+EF+ +VQ +VE+S + L+ QHT +
Sbjct: 12 QEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQHTGQAEDKTR 71
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE---- 118
RY ++F QIY++KP E DGS +P+ P EAR RNLTYSA L+VD+++ V+ +GEE
Sbjct: 72 RYEIEFGQIYMNKPQQTEADGSTAPLFPQEARQRNLTYSAGLHVDVSQKVLVKGEEDELD 131
Query: 119 --------PVTTQHQ----KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
P TQ + K ++GK+PIML S +C L L D LNECP D GGYFI
Sbjct: 132 ENGDQLWIPDPTQEEIVDEKVYLGKVPIMLHSHFCWLTDLPDEGKYSLNECPFDSGGYFI 191
Query: 167 INGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
INGSEKVLIAQE+MA N VYVFS S + EIRS +E + ST+ V + +R
Sbjct: 192 INGSEKVLIAQERMAANHVYVFSKAPPSPITFLAEIRSAVERGGKTISTMQVKLFSRN-- 249
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
++ ++ I A LPYI+ +IPI+IVFRALG V DRD+L+HI YDF+D +M+EM+KP +
Sbjct: 250 --REKSLNNTIKATLPYIRNDIPIVIVFRALGVVPDRDVLQHICYDFNDTQMLEMLKPCI 307
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
+EAFVIQ++ VAL+FIG RG G+++ +R YA+EILQKEMLPH+ +S+ TKKAYF
Sbjct: 308 EEAFVIQDREVALDFIGRRGTTTGLSRFKRTAYAQEILQKEMLPHISMSEGSNTKKAYFF 367
Query: 346 GYMVHRLLLASLGRRELDDRDHY---------------VRM-----------YAQKFIDR 379
GYMVHRLLLA+L RRE+DDRDH+ RM + Q+ ++
Sbjct: 368 GYMVHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSGLFRMLFRKVTRDIYRHLQRCVED 427
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
++F+L+ A++ IT+GLRYSLATGNWGDQKKA Q++AGVSQVLNR TFAS+LSHLRR
Sbjct: 428 QREFHLQAAVRHATITNGLRYSLATGNWGDQKKAMQSKAGVSQVLNRYTFASTLSHLRRC 487
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISVG+ +PI+EFL
Sbjct: 488 NTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSNISVGTPSAPIVEFL 547
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EE+ + +L ++ A ATK+FVNG W+G H DP QL+ TLR LRR+ D I EVS++R
Sbjct: 548 EEFGLTSLIDMQ-GADPKATKVFVNGVWLGTHDDPGQLVDTLRDLRRK-DDISHEVSVVR 605
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGS--LLLKKRHIDNLKERDYNNYGWQVLVQSGVVE 617
DIR++E+RI+TDAGR+ RPL I + S LL+K+ H++ L E + W LVQSGV+E
Sbjct: 606 DIREKELRIYTDAGRLLRPLFIVDQPSMTLLIKRHHVEALNEETGEGWDWTRLVQSGVIE 665
Query: 618 YIDTLEEETTMIAM 631
Y+DT EEET +I M
Sbjct: 666 YLDTEEEETVLICM 679
>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa
s.n.]
Length = 951
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/578 (62%), Positives = 440/578 (76%), Gaps = 36/578 (6%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYSAPLYVD++K V+++G EE TQ K FIGK+PIMLRS+YC
Sbjct: 3 ATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
L +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E
Sbjct: 63 TLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E +RP ST++V M+AR S K + GQ I A LPYI+ +IPI+IVFRALGFVA
Sbjct: 123 VRSMAESQNRPPSTMFVRMLAR--TSAKGGSSGQYIRATLPYIRVDIPIIIVFRALGFVA 180
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYAR
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAR 240
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQKEMLPHVG++++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 241 EILQKEMLPHVGMAEYCETKKAYYFGYIIHRLLLVALGRRAEDDRDHYGNKRLDLAGPLL 300
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 359
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A
Sbjct: 360 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 419
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNLALM YI+VGS PILEFLEEW EN EEI+P+ I +ATKIFVNGCWVGIHRDP
Sbjct: 420 GLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPEATKIFVNGCWVGIHRDP 479
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHI 594
+ L+ TLR+LRR++D + +EV ++RDIR +E+RI+TD GR RPL I E LL+KK+ I
Sbjct: 480 DMLVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDI 538
Query: 595 DNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ + GW LV G +EY+DT EEETTMI+M
Sbjct: 539 QALQQRETPEDGGWHDLVAKGFIEYVDTEEEETTMISM 576
>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
Length = 868
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/576 (62%), Positives = 436/576 (75%), Gaps = 41/576 (7%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK ++++G EE TQ K FIGK+PIMLRS+YC L
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRIIKKGHDCEEVTETQDFAKVFIGKVPIMLRSSYCTL 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYA+ E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R SA G I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSR------TSAKGY-IRATLPYIRTEIPIIIVFRALGFVADK 177
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 178 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 237
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 238 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 297
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 298 LFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKPITSGLKYSLATGNWG-QANAAGT 356
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT++S+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 357 RAGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 416
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWVGIHR+P+
Sbjct: 417 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDL 476
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 477 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 535
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ GW LV G +EY+DT EEETTMI+M
Sbjct: 536 LQQRESPEEGGWHDLVAKGFIEYVDTEEEETTMISM 571
>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
Length = 952
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/576 (63%), Positives = 437/576 (75%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC L
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTL 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYA+ E+R
Sbjct: 65 FQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP ST++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSTMFVRMLSRA--SAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV +FCETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS PILEFLEEW EN EEI+P+ I ATKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHREPDM 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRR++D + +EV ++RDIR RE+RI+TD GR RPL I E LL++K+ I
Sbjct: 482 LVKTLRRLRRRVD-VNTEVGVVRDIRLRELRIYTDYGRCSRPLFIVEKQRLLIRKKDIHA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ + GW LV G +EYIDT EEETTMI+M
Sbjct: 541 LQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISM 576
>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1233
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/685 (53%), Positives = 471/685 (68%), Gaps = 63/685 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW+VI+++F EKGLV QQLDSFDEFI+ ++Q +V + + L AQHTS + R
Sbjct: 22 EDCWLVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLVLDQPAQHTSEDDFENRR 81
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG------- 116
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V +
Sbjct: 82 YEISFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVFKSDDNDRKNN 141
Query: 117 -----EEPVTTQ--HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
EE V + K ++GK+PIMLRS +C+L L + + EL ECP D GGYF+ING
Sbjct: 142 ELEWIEEHVEGEGTDTKVYLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVING 201
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR S+L + + R
Sbjct: 202 SEKVLIAQERSAANIVQVFKKAGPSPISHVAEIRSALEKGSRLISSLQIKLYGRD----D 257
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
++A G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 258 RAASGRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEG 317
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQEQ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + T+KA+FLGYM
Sbjct: 318 FVIQEQEVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFATRKAFFLGYM 376
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
V+RLLL +L R+E DDRDH+ + Y Q+ ++ K+
Sbjct: 377 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYNYMQRCVENDKE 436
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 437 FNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 496
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL FLEEW
Sbjct: 497 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSSEPILVFLEEW 556
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E LE+ +PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I EVSIIRDIR
Sbjct: 557 GLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVETIRSLRRKGD-ISPEVSIIRDIR 615
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN---------YG 606
+RE +I TDAGR+ RPL I ++ G L+L K H+ L + +Y++ YG
Sbjct: 616 EREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNKSHVKKLMDSEYDDYVYDDEQEAYG 675
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W LV+ G++EY+D EEET MIAM
Sbjct: 676 WSSLVRDGIIEYVDAEEEETIMIAM 700
>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1087
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/584 (61%), Positives = 434/584 (74%), Gaps = 36/584 (6%)
Query: 80 EKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIM 135
E DG + + P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIM
Sbjct: 4 ESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIM 63
Query: 136 LRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SK 194
LRS+YC L +++DLTEL ECPLD GGYFIINGSEKVLIAQEKM+TN VYVF + +K
Sbjct: 64 LRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNK 123
Query: 195 YAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFR 254
YA+ E+RS E +RP ST++V M++R S K + GQ I A LPYI+ EIPI+IVFR
Sbjct: 124 YAFVAEVRSMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFR 181
Query: 255 ALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKER 314
ALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVT+E+
Sbjct: 182 ALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREK 241
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------ 368
RIKYA+EILQKEMLPHVG+ ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 242 RIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLD 301
Query: 369 --------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG
Sbjct: 302 LAGPLLGGXFRMLFRKLTRDVRAYVQKXVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG 361
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAET
Sbjct: 362 -QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAET 420
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNLALM YI+VGS PILEFLEEW EN EEI+P+ I ATKIFVNG WV
Sbjct: 421 PEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWV 480
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL 588
GIHRDP+ ++ + R+ + +EV ++RDIR +E+RI+TD GR RPL I E LL
Sbjct: 481 GIHRDPD-MLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 539
Query: 589 LKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+KK+ I L++R+ GW LV G +EYIDT EEETTMI+M
Sbjct: 540 IKKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEEEETTMISM 583
>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
Length = 951
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/576 (61%), Positives = 431/576 (74%), Gaps = 36/576 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYV++TK ++R+G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVNVTKRIIRKGHDLEEVTETQEFTKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+ N VYVF + +KYAY E+R
Sbjct: 65 YHNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSDNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVQMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEH YDF +MME+ PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHTCYDFSGTQMMELPHPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
QKEMLPHVGV ++CETKKAY+ GY++H+LLL + GRR DDRDHY
Sbjct: 243 FQKEMLPHVGVGEYCETKKAYYFGYIIHQLLLCAFGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I +TKIFVNGCWVGIHR+P+
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDL 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ TLR+LRRQ+D + +EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 482 LVKTLRQLRRQVD-VNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIRA 540
Query: 597 LKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+ R+ + GW LV G +EY+DT EEETTMI+M
Sbjct: 541 LQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISM 576
>gi|281204919|gb|EFA79113.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1965
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/664 (57%), Positives = 468/664 (70%), Gaps = 75/664 (11%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH--TSTEVET 60
QE W VI++YF +KGLVRQQLDSFDEFIQ ++Q I+++SP I L+ EAQH +V
Sbjct: 19 QEDSWAVISSYFKDKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPEAQHHPGQQQVHN 78
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV---RQGE 117
+ +KF QIYLSKPT E DG P+ PN+AR+RNLTYSAPLYVDITKT V R+ E
Sbjct: 79 FSTFSIKFGQIYLSKPTS-EIDGMTQPVTPNQARIRNLTYSAPLYVDITKTQVTKDRRDE 137
Query: 118 EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
EP+ +K FIGK+PIMLRS YC+L+ +D DL + ECP D GGYFIINGSEKVLIAQ
Sbjct: 138 EPL----EKIFIGKVPIMLRSKYCMLDETSDVDLPMMGECPYDQGGYFIINGSEKVLIAQ 193
Query: 178 EKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
EKM+ N VYVF SKY+Y EIRSC E SRPTST++V M+ Q+ K IG I
Sbjct: 194 EKMSHNHVYVFKKTPPSKYSYVAEIRSCQETGSRPTSTMYVKML----QNSNKGPIG--I 247
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
A +PYIKQ++PI++VFRALGFVAD+DILEHI YDF D +MM++++PSL+E+FVIQ Q +
Sbjct: 248 KATIPYIKQDVPIVVVFRALGFVADKDILEHICYDFSDQQMMDLMRPSLEESFVIQNQEI 307
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
AL+++G RG+ G T+E+RIK+ARE+LQKEMLPHV V+++ ETKKAY+ GY+VHRLLLA+
Sbjct: 308 ALDYLGKRGSTVG-TREQRIKFAREVLQKEMLPHVSVAEYFETKKAYYFGYIVHRLLLAA 366
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
L RR LDDRDH+ VR + Q+ ID+G++F AIK
Sbjct: 367 LERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRSHLQRCIDKGREFIPSQAIK 426
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
+K IT GL+YSLATGNWG ARAGV+QVLNRLTFAS+LSHLRR+N+PIGR+
Sbjct: 427 SKTITSGLKYSLATGNWGAANTG--ARAGVAQVLNRLTFASTLSHLRRLNTPIGRE---- 480
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
EG A GLVKNLA+MAYISVGS PILEFLEEWS ENLEEI
Sbjct: 481 -------------------EGQACGLVKNLAMMAYISVGSASQPILEFLEEWSTENLEEI 521
Query: 511 APSA-IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
S+ I +ATKIFVNG WVGIH P+ L+ TLR LRR D+ V EVSI+RDIR++E+R++
Sbjct: 522 TDSSTILNATKIFVNGMWVGIHHQPDHLLKTLRVLRRCGDVSV-EVSIVRDIREKELRLY 580
Query: 570 TDAGRICRPLLIAENGS--LLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
TD+GR CRPL + ++ L +KK HI L Y W L+ G+VEYIDT EEET
Sbjct: 581 TDSGRCCRPLFVVDDKDYKLTIKKSHIRQLDSDP--EYKWLDLITDGLVEYIDTEEEETV 638
Query: 628 MIAM 631
MIAM
Sbjct: 639 MIAM 642
>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/689 (53%), Positives = 467/689 (67%), Gaps = 71/689 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + + L AQHTS + R
Sbjct: 23 EDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRR 82
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V +
Sbjct: 83 YEIAFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVFKSDDNNRKDN 142
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ EEP T K ++GK+PIMLRS +C+L GL + + EL ECP D GGYF
Sbjct: 143 ELEWIEESVENEEPQT----KVYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGYF 198
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 199 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD- 257
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 258 ---DKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPC 314
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 315 VEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFF 373
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 374 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCVE 433
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K+FN LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 434 NDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 493
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 494 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYF 553
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW ME LE+ PS +AT++FVNG WVG HR+P L+ T+R LRR+ D I EVSI+
Sbjct: 554 LEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLVETMRNLRRRGD-ISPEVSIV 612
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN-------- 603
RDIR+RE +I TDAGR+ RPL I ++ G L LKK H++ L +Y+
Sbjct: 613 RDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKEHVNKLLNAEYDEFSDEPDT 672
Query: 604 -NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
NY W L+ GVVEY+D EEET MIAM
Sbjct: 673 LNYSWSSLLNDGVVEYVDAEEEETIMIAM 701
>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC
6260]
Length = 1291
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/693 (53%), Positives = 470/693 (67%), Gaps = 75/693 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + ++ L AQHTS E R
Sbjct: 76 EDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRR 135
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V++
Sbjct: 136 YEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEH 195
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ EEP+T K ++GK+PIMLRS +C+L L + + EL ECP D GGYF
Sbjct: 196 ELEWIEEEIKDEEPLT----KVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYF 251
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 252 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGRE- 310
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+KS + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 311 ---EKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPC 367
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RGA G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 368 VEEGFVIQEREVALDFIGRRGAL-GIKREKRIQYAKDILQKELLPNITQDEGFETRKAFF 426
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 427 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVE 486
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 487 NDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 546
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 547 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYF 606
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I EVSII
Sbjct: 607 LEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGD-ISPEVSII 665
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN------- 604
RDIR++E +I TDAGR+ RPL I ++ G L L+K HI L +Y+
Sbjct: 666 RDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEF 725
Query: 605 ------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GVVEY+D EEET MIAM
Sbjct: 726 GEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAM 758
>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
Length = 1229
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/690 (53%), Positives = 465/690 (67%), Gaps = 69/690 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F+EKGLV QQLDSFDEFI+ ++Q +V + + L AQHT+ R
Sbjct: 19 EDCWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHTTPNDNQNKR 78
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ + F +IYLS+PT E DGS PM P EAR RNLTYS+PLYVD+ K V+ ++P +
Sbjct: 79 FEITFGKIYLSRPTMTEADGSTHPMYPQEARARNLTYSSPLYVDMKKRVLFSIDDPARPE 138
Query: 124 H---------------QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
K +IGK+PIMLRS +C+L GL + DL ELNECP D GGYF+IN
Sbjct: 139 ADVVWNPIPGEVEEPVSKVYIGKVPIMLRSKFCILRGLRENDLYELNECPYDQGGYFVIN 198
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + M R +
Sbjct: 199 GSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAVEKGSRLISSMQIKMFGRSDKGP 258
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
I A LPY++ +IPI++VFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 259 VT------IKAALPYVRADIPIVVVFRALGVVPDGDILEHICYDNNDWQMLEMLKPCIEE 312
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ++ VAL++IG RG+ GV +ERR++YAR+ILQKE+LPH+ + ET+KAYFLGY
Sbjct: 313 AFVIQDREVALDYIGRRGSAVGVNRERRVRYARDILQKELLPHITQEEGFETRKAYFLGY 372
Query: 348 MVHRLLLASLGRRELDDRDHY---------------VRM-----------YAQKFIDRGK 381
MVHR+LL +LGR+E DDRDH+ RM Y K ++ K
Sbjct: 373 MVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRMLFKKLTKDIYRYMLKCVETNK 432
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
DFNL LA+K+ IT+GL+YSLATGNWGDQKKA +RAGVSQVLNR TFAS+LSHLRR N+
Sbjct: 433 DFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFASTLSHLRRTNT 492
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PI+ FL+E
Sbjct: 493 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSFPIINFLDE 552
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W ME LE+ P +T++FVNG WVG+HRD QL ++ LRR D I SEVSIIRDI
Sbjct: 553 WGMEPLEDYVPHTHTTSTRVFVNGVWVGVHRDATQLTDMIKSLRRMGD-IESEVSIIRDI 611
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE-------------RD 601
R++EIRI TDAGR+ RPL + EN G L+L+K HI L++ +
Sbjct: 612 REKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHIYQLQQQMAEQAETEGDEGKG 671
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N GW LV +GV+EYID EEET MIAM
Sbjct: 672 DKNTGWNWLVDNGVIEYIDGEEEETVMIAM 701
>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
Length = 952
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/577 (62%), Positives = 433/577 (75%), Gaps = 37/577 (6%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD++ V+++G EE Q QK FIGK+PIMLRS+YC L
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVSMRVIKKGHDGEELTEPQDLQKVFIGKVPIMLRSSYCTL 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP ST++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSTMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+L HLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLPHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS PILEFLEEW EN EEI+P I ATKIFVNGCWVGIHRDP+
Sbjct: 422 VKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPVVIPQATKIFVNGCWVGIHRDPDM 481
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR--HI 594
L+ TLR+LRR++D + +EV ++RDIR +E+RI+TD GR RPL I E LL+KK+ H
Sbjct: 482 LVKTLRRLRRRVD-VNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHA 540
Query: 595 DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+E ++ GW LV G +EYIDT EEETTMI+M
Sbjct: 541 LQLREGGPDDVGWHDLVAKGFIEYIDTEEEETTMISM 577
>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/689 (53%), Positives = 467/689 (67%), Gaps = 71/689 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + + L AQHTS + R
Sbjct: 23 EDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRR 82
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V +
Sbjct: 83 YEIAFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVFKSDDNNRKDN 142
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ EEP T K ++GK+PIMLRS +C+L GL + + EL ECP D GGYF
Sbjct: 143 ELEWIEESVENEEPQT----KVYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGYF 198
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 199 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD- 257
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 258 ---DKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPC 314
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 315 VEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFF 373
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 374 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCVE 433
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K+FN LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 434 NDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 493
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 494 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYF 553
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW ME LE+ PS +AT++FVNG WVG HR+P L+ T+R LRR+ D I EVSI+
Sbjct: 554 LEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLVETMRNLRRRGD-ISPEVSIV 612
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN-------- 603
RDIR+RE +I TDAGR+ RPL I ++ G L LKK H++ L +Y+
Sbjct: 613 RDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKEHVNKLLNAEYDEFSDEPDT 672
Query: 604 -NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
NY W L+ GVVEY+D EEET MIAM
Sbjct: 673 LNYSWSSLLNDGVVEYVDAEEEETIMIAM 701
>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
reilianum SRZ2]
Length = 1242
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/678 (52%), Positives = 470/678 (69%), Gaps = 53/678 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI A+F+EKGLVR QLDSF+EF+ ++Q +VE+ + L+ QH+ +
Sbjct: 53 ISQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDK 112
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY ++F QIYL+KPT E DGS + + P EAR RNLTYSA L+VD+T+ V+ Q + V
Sbjct: 113 TRRYEIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSHDEV 172
Query: 121 T---------------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ Q+ FIGK+PIML+S +C L GL D LNECP D GGYF
Sbjct: 173 DLNGDPAWVPEHGKTDVEEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYF 232
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+MA N VYVFS + + EIRS +E + ST+ V + +R
Sbjct: 233 VINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRN- 291
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
K+ I A LPYI+ +IPI+IVFRALG V DR++L+HI YDF+D M+EM+KP
Sbjct: 292 ---KEKTANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPC 348
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++EAFVIQ+++VAL+FIG RG G+++ +R YA+EILQKEMLPH+ S+ TKKAYF
Sbjct: 349 IEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYF 408
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
GYM+HRLLLA+L RRE+DDRDH+ V + QK ++
Sbjct: 409 FGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVE 468
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
++F+++ A+K+ IT+GLRYSLATGNWGDQKKA QA+AGVSQVLNR FAS+LSHLRR
Sbjct: 469 EHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRR 528
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ++VG+ +PI+EF
Sbjct: 529 TNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEF 588
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEE+ +++L ++ A A ATKIFVNG W+G H DP QL+ TLR LRR+ D I EVS++
Sbjct: 589 LEEFGLDSLVDMQ-LAHAKATKIFVNGVWMGTHDDPGQLVDTLRDLRRK-DDISHEVSVV 646
Query: 559 RDIRDREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKE---RDYNNYGWQVLVQS 613
RDIR+RE+RI+TDA R+ RP+ I + SLL+KKRH++ + + + +GW LVQ
Sbjct: 647 RDIRERELRIYTDASRVLRPVFIVNPNDMSLLIKKRHVNMIGQPVPQTGEEFGWTHLVQE 706
Query: 614 GVVEYIDTLEEETTMIAM 631
GV+EY+D EEE+ +I M
Sbjct: 707 GVIEYLDAEEEESALICM 724
>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
Length = 1232
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/686 (53%), Positives = 466/686 (67%), Gaps = 64/686 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + + L AQHTS + R
Sbjct: 21 EDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRR 80
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG------- 116
Y + F +IY+SKP E DG+ PM P EARLRNLTYS+PLYVD+TK V +
Sbjct: 81 YEITFGKIYISKPMQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVFKSDDNRRKEN 140
Query: 117 -----EEPVTTQ--HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
EE V + QK F+GK+PIMLRS +C+L L + + EL ECP D GGYF+ING
Sbjct: 141 ELEWVEEKVEDEEPQQKVFLGKVPIMLRSKFCMLRDLGEHEFFELKECPYDMGGYFVING 200
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R +
Sbjct: 201 SEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD----E 256
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 257 KGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEG 316
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + E++KA+FLGYM
Sbjct: 317 FVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFESRKAFFLGYM 375
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
V+RLLL +L R+E DDRDH+ + Y Q+ ++ K+
Sbjct: 376 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCVENDKE 435
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 436 FNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 495
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FLEEW
Sbjct: 496 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILYFLEEW 555
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I EVSIIRDIR
Sbjct: 556 GMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPANLVDTMRSLRRRGD-ISPEVSIIRDIR 614
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN----------NY 605
++E +I TDAGR+ RPL I ++ G L L+K H+ NL +Y+ +Y
Sbjct: 615 EKEFKIFTDAGRVYRPLFIVDDEAESETKGDLKLQKEHVHNLLSSEYDEYEDPDNEGASY 674
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ GVVEY+D EEET MIAM
Sbjct: 675 TWSSLINDGVVEYVDAEEEETIMIAM 700
>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC
6260]
Length = 1291
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/693 (53%), Positives = 469/693 (67%), Gaps = 75/693 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + ++ L AQHTS E R
Sbjct: 76 EDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRR 135
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V++
Sbjct: 136 YEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEH 195
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ EEP T K ++GK+PIMLRS +C+L L + + EL ECP D GGYF
Sbjct: 196 ELEWIEEEIKDEEPST----KVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYF 251
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 252 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGRE- 310
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+KS + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 311 ---EKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPC 367
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RGA G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 368 VEEGFVIQEREVALDFIGRRGAL-GIKREKRIQYAKDILQKELLPNITQDEGFETRKAFF 426
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 427 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVE 486
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 487 NDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 546
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 547 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYF 606
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I EVSII
Sbjct: 607 LEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGD-ISPEVSII 665
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN------- 604
RDIR++E +I TDAGR+ RPL I ++ G L L+K HI L +Y+
Sbjct: 666 RDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEF 725
Query: 605 ------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GVVEY+D EEET MIAM
Sbjct: 726 GEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAM 758
>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
Length = 1236
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/693 (53%), Positives = 469/693 (67%), Gaps = 75/693 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + ++ L AQHTS E R
Sbjct: 21 EDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRR 80
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V++
Sbjct: 81 YEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEH 140
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ EEP T K ++GK+PIMLRS +C+L L + + EL ECP D GGYF
Sbjct: 141 ELEWIEEEIKDEEPST----KVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYF 196
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 197 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGRE- 255
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+KS + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 256 ---EKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPC 312
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RGA G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 313 VEEGFVIQEREVALDFIGRRGAL-GIKREKRIQYAKDILQKELLPNITQDEGFETRKAFF 371
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 372 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVE 431
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 432 NDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 491
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 492 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYF 551
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I EVSII
Sbjct: 552 LEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGD-ISPEVSII 610
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN------- 604
RDIR++E +I TDAGR+ RPL I ++ G L L+K HI L +Y+
Sbjct: 611 RDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEF 670
Query: 605 ------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GVVEY+D EEET MIAM
Sbjct: 671 GEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAM 703
>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
[Meyerozyma guilliermondii]
Length = 1219
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/693 (53%), Positives = 469/693 (67%), Gaps = 75/693 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + ++ L AQHTS E R
Sbjct: 21 EDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRR 80
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V++
Sbjct: 81 YEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEH 140
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ EEP T K ++GK+PIMLRS +C+L L + + EL ECP D GGYF
Sbjct: 141 ELEWIEEEIKDEEPST----KVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYF 196
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 197 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGRE- 255
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+KS + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 256 ---EKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPC 312
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RGA G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 313 VEEGFVIQEREVALDFIGRRGAL-GIKREKRIQYAKDILQKELLPNITQDEGFETRKAFF 371
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 372 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVE 431
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 432 NDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 491
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 492 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYF 551
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I EVSII
Sbjct: 552 LEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGD-ISPEVSII 610
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN------- 604
RDIR++E +I TDAGR+ RPL I ++ G L L+K HI L +Y+
Sbjct: 611 RDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEF 670
Query: 605 ------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GVVEY+D EEET MIAM
Sbjct: 671 GEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAM 703
>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
Length = 1232
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/703 (51%), Positives = 474/703 (67%), Gaps = 70/703 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + + L AQHTS + R
Sbjct: 23 ENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSEDDHENRR 82
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG------- 116
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V++
Sbjct: 83 YEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVLKSDDNNRVDN 142
Query: 117 -----EEPVTTQ--HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
EE + + K ++GK+PIMLRS +C+L GL + + EL ECP D GGYF+ING
Sbjct: 143 ELEWVEEKIEDEGPQTKVYLGKVPIMLRSKFCMLRGLGEHEFYELKECPYDMGGYFVING 202
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R
Sbjct: 203 SEKVLIAQERSAANIVQVFKKAAPSPISHIAEIRSAIEKGSRLISSMQIKLYGRD----D 258
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 259 KGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEG 318
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYM
Sbjct: 319 FVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYM 377
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
V+RLLL +L R+E DDRDH+ + Y Q+ ++ K+
Sbjct: 378 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKE 437
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 438 FNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 497
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL FLEEW
Sbjct: 498 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSSEPILYFLEEW 557
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ DI EVSIIRDIR
Sbjct: 558 GMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGDI-SPEVSIIRDIR 616
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSGV 615
++E +I TDAGR+ RPL I ++ G L LKK ++ L +Y+++G
Sbjct: 617 EKEFKIFTDAGRVYRPLFIVDDDAESETKGELKLKKENVHKLINAEYDDFG--------- 667
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
++ ++ W LV G+VEY+D EEET MIAM+P
Sbjct: 668 -------DDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTP 703
>gi|397576311|gb|EJK50184.1| hypothetical protein THAOC_30880 [Thalassiosira oceanica]
Length = 1299
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/715 (52%), Positives = 480/715 (67%), Gaps = 91/715 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT------ 54
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q +V+DS I + E QHT
Sbjct: 50 VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHTVGYDED 109
Query: 55 ----STEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK 110
+ T + +KF Q+YLSKPT EKDG+ + M P+EARLRNLTY+APLYVD+T
Sbjct: 110 GFDEAMSSSTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTM 169
Query: 111 TVVR------------QGEEPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 157
R + EPV+T+ +K F+G +PIMLRS +C+L+ D L +L EC
Sbjct: 170 NEYRVPSDANVADPAEEMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGEC 229
Query: 158 PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLW 216
D GGYF++NGSEKV++AQE+M+ N VY F K SK+++ E RS +E+S+RPTSTL+
Sbjct: 230 IYDQGGYFVVNGSEKVIVAQERMSNNHVYAFRKKQPSKFSWVIETRSQVENSTRPTSTLY 289
Query: 217 VNMMARGGQSLKKSAI-GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDP 275
+ M +GG K AI G +I + LPYI+ +IP++I+FRALG+VADRDI+EH++YD D
Sbjct: 290 IQMYQKGG----KGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDG 345
Query: 276 EMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSD 335
EMM++ +PSL+E+FVIQ+Q VAL+FIG RG+ VTK+ RI+YA ILQ+E+LPHVG +
Sbjct: 346 EMMDLFRPSLEESFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQREVLPHVGTEE 405
Query: 336 FCETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------V 369
CETKK +FLGY VH+LL+ LGR + DDRDH+ V
Sbjct: 406 HCETKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDV 465
Query: 370 RMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNW---------------------- 407
R + Q+ +D GK FN+ AIK+ ITDGL+YSLATGN
Sbjct: 466 RRHLQRCLDEGKHFNIGAAIKSNHITDGLKYSLATGNCESYRKNDCIFVFSCKPNNLMRH 525
Query: 408 ------GDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWG 461
GD K +AGVSQVLNRLT+ASSLSHLRR N+P+ R GK AKPRQLHN+ WG
Sbjct: 526 LGRLEGGD--KGATTKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWG 583
Query: 462 MICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT-- 519
M+CP ETPEG AVGLVKN+ALMAYI+ G+ P++EFLEE+S ENL +I PS IA+++
Sbjct: 584 MVCPCETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAESSTC 643
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
KIFVNG WVG+HRDP L+ T R LRR +DI +EVSI+RDI + E+RI+TDAGRICRPL
Sbjct: 644 KIFVNGNWVGVHRDPRHLVHTFRSLRRMIDID-AEVSIVRDITESEVRIYTDAGRICRPL 702
Query: 580 LIA-ENGSLLLKKRHIDNLK--ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I E+ L +KK HI ++ D W L+ G+VEY+DT EEETTMIAM
Sbjct: 703 FIVNEDQELAIKKHHISQIQGFSEDGKRLTWTDLLMEGLVEYVDTEEEETTMIAM 757
>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
hordei]
Length = 1241
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/678 (52%), Positives = 470/678 (69%), Gaps = 53/678 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI A+F+EKGLVR QLDSF+EF+ ++Q +VE+ + L+ QH+ +
Sbjct: 52 ITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDK 111
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY ++F QIYL+KPT E DGS + + P EAR RNLTYSA L+VD+T+ V+ Q E+ V
Sbjct: 112 TRRYEIEFGQIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSEDEV 171
Query: 121 T---------------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ ++ FIGK+PIML+S +C L GL D LNECP D GGYF
Sbjct: 172 DLNGDPAWIPEYGKTDVEEEQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYF 231
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+MA N VYVFS + + EIRS +E + ST+ V + +R
Sbjct: 232 VINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRN- 290
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
K+ I A LPYI+ +IPI+IVFRALG V DR++L+HI YDF+D M+EM+KP
Sbjct: 291 ---KEKTANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPC 347
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++EAFVIQ+++VAL+FIG RG G+++ +R YA+EILQKEMLPH+ S+ TKKAYF
Sbjct: 348 IEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYF 407
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
GYM+HRLLLA+L RRE+DDRDH+ V + QK ++
Sbjct: 408 FGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVE 467
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
++F+++ A+K+ IT+GLRYSLATGNWGDQKKA QA+AGVSQVLNR FAS+LSHLRR
Sbjct: 468 EHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRR 527
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ++VG+ +PI+EF
Sbjct: 528 TNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEF 587
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEE+ +++L ++ A A ATKIFVNG W+G H DP QL+ TLR LRR+ D I EVS++
Sbjct: 588 LEEFGLDSLVDMQ-LAHAKATKIFVNGVWMGTHDDPAQLVDTLRDLRRK-DDISHEVSVV 645
Query: 559 RDIRDREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKE---RDYNNYGWQVLVQS 613
RDIR+RE+RI+TDA R+ RP+ I + +LL+KKRH++ + + + + W L+Q
Sbjct: 646 RDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKRHVEMIGQTIPQTGEEFRWTHLIQE 705
Query: 614 GVVEYIDTLEEETTMIAM 631
GV+EY+D EEE+ +I M
Sbjct: 706 GVIEYLDAEEEESVLICM 723
>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
mediterranea MF3/22]
Length = 1274
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/722 (50%), Positives = 484/722 (67%), Gaps = 79/722 (10%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW +I+A+F+EKGLVRQQLDSFDEF++ ++Q I+E++ + L + QH+ +E +
Sbjct: 43 QEDCWNIISAFFNEKGLVRQQLDSFDEFVKNTIQEIIEENADLILDQQDQHSGSEKDAAR 102
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY + F QI +S P+ E DGS + P + R+RNLTY+AP+Y ++TK + E+P +
Sbjct: 103 RYHIHFSQIIVSNPSFSEADGSTQAIFPQDCRIRNLTYAAPVYCEMTKQTLIGHEDPDSM 162
Query: 123 ---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
+H K IG+IP+MLRS +C L +RDL +NECP D GGYFII
Sbjct: 163 TGEMIWEPEHGGEALEHVKPMIGRIPMMLRSYFCNLRKFNERDLYRVNECPYDSGGYFII 222
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+MATN VYVF+ + S ++ EIRS +E + S V M RG
Sbjct: 223 NGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEQGGKTISQFQVKMYHRG--- 279
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
++ A G + A +PYIK +IPI +VFRALG ++DRDILEHI +D +D M+EM+KP +D
Sbjct: 280 -QERASGSVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICFDMNDSSMLEMLKPCID 338
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
+ FVIQ++ VAL+FIG RG G+ +++R++YA+EILQKEMLPH+ +++ E+KKAYF G
Sbjct: 339 DGFVIQDREVALDFIGNRGTATGLNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYFFG 398
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM+HRLLLA+L RRELDDRDH+ V Y QK ++
Sbjct: 399 YMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETH 458
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
K+FN+ +AIKT+ +T+GL+YSLATGNWGDQKKA ++AGVSQVLNR T+AS+LSHLRR N
Sbjct: 459 KEFNINMAIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCN 518
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS P+++FLE
Sbjct: 519 TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAVISVGSVSGPVIDFLE 578
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E LEE S + TK+FVNG W+G+ RDP ++ TLR LRR D SEVSI+RD
Sbjct: 579 EWGLETLEENTQS--TNLTKVFVNGVWLGVCRDPLNMVNTLRTLRRMQD-FDSEVSIVRD 635
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGV----- 615
IR+REIRI++DAGR+ RPL I E+ L LK++H+ L+E+ W++ + V
Sbjct: 636 IREREIRIYSDAGRVLRPLFIVEDHKLKLKRQHLRWLQEK------WRIEERPYVPREER 689
Query: 616 ----VEYIDTL--EEETTMIA-------------MWQVLVQSGVVEYIDTLEEETTMIAM 656
V +T+ EEE I W L++ GV+E +D EEET MI M
Sbjct: 690 NKEEVSEGETVADEEEGRPIMRDERRVKRKKKPFTWSSLIRDGVIELLDAEEEETVMICM 749
Query: 657 SP 658
+P
Sbjct: 750 TP 751
>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
Length = 1147
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/636 (56%), Positives = 459/636 (72%), Gaps = 48/636 (7%)
Query: 35 VQRIVEDSPQIDLQAEAQHT-STEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEA 93
+Q +V+DS ++ ++ E Q+T E T + + F Q+Y+SKPT E+DG+ S M P+EA
Sbjct: 1 MQELVDDSGELTVKPETQYTPGQESVTRSTFAVLFNQVYVSKPTATERDGTTSNMFPHEA 60
Query: 94 RLRNLTYSAPLYVDIT---KTVVRQGEEPVTTQH---QKSFIGKIPIMLRSTYCLLNGLT 147
RLRN+TYS+P+YVDI+ +R E +T K F+G +PIMLRS +C+L +
Sbjct: 61 RLRNMTYSSPMYVDISVNSACRIRMLAEDGSTHRIDSPKEFLGYVPIMLRSRFCVLADKS 120
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLE 206
D++L EL EC D GGYF+INGSEKV++AQE+M+ N VY F K KY++ E RS +E
Sbjct: 121 DKELCELGECIYDQGGYFVINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVE 180
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
H +RPTST+++ M + G+ + G +I LPYI+ ++P++IVFRALGFVADRDILE
Sbjct: 181 HGARPTSTIYMQMYNKAGRGQSQ---GNQIRMTLPYIRVDVPVIIVFRALGFVADRDILE 237
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKE 326
H++YDF D EMME ++PSLDEAFV+Q Q +AL+FIG RG+ + + +R++YA+E+LQKE
Sbjct: 238 HVVYDFSDTEMMEQLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKE 297
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
+LPHVG + +TKKA+F+GY+VH+LL+ SL R + DDRDHY
Sbjct: 298 VLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRM 357
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
V Y QK ID G+DFNL AIK+++ITDGLRYSLATGNWGD+K A +RAGV
Sbjct: 358 LFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDA--SRAGV 415
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVLNRLT+AS+LSHLRR+N+P+GR+GK AKPRQLHNT WG ICPAETPEG AVGLVKNL
Sbjct: 416 SQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNL 475
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLM 538
ALM+Y+SVGS SPILEFLEEWSMENLEEI+P IAD TKIFVNG WVG+HRDP L
Sbjct: 476 ALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLE 535
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS---LLLKKRHID 595
TLR LRRQ+DI EVS++RDI+++E+RI+TDAGR+CRPLLI S L L+K HI
Sbjct: 536 STLRSLRRQIDID-PEVSVVRDIKEKELRIYTDAGRVCRPLLIISKFSRQELRLRKSHIQ 594
Query: 596 NLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L GW L+ G+VE +DT EEETTMIAM
Sbjct: 595 KLVN---GELGWTQLLVKGLVELVDTEEEETTMIAM 627
>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
Y-27907]
Length = 1238
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/683 (53%), Positives = 464/683 (67%), Gaps = 61/683 (8%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + + L AQHTS R
Sbjct: 29 EDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSESDHENRR 88
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG------- 116
Y + F +IY+SKP+ E DG+ PM P EARLRNLTYS+PLYVD+TK V +
Sbjct: 89 YEITFGKIYISKPSQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKKVFKSDDNKRKEN 148
Query: 117 ------EEPVTTQ--HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
EE V + K ++GK+PIMLRS +C+L L + D EL ECP D GGYF+IN
Sbjct: 149 NELDWIEEKVEDEDPRTKVYLGKVPIMLRSKFCMLRDLGEHDFYELKECPYDMGGYFVIN 208
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R
Sbjct: 209 GSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD---- 264
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
+K + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 265 EKGVSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE 324
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGY
Sbjct: 325 GFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGY 383
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MV+RLLL +L R+E DDRDH+ + Y Q+ ++ K
Sbjct: 384 MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDK 443
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+
Sbjct: 444 EFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT 503
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FLEE
Sbjct: 504 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILYFLEE 563
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W ME+LE+ PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I EVSIIRDI
Sbjct: 564 WGMESLEDYVPSNSPDSTRVFVNGVWVGTHRDPVNLVDTMRSLRRRGD-ISPEVSIIRDI 622
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN------YGWQ 608
R++E +I TDAGR+ RPL I ++ G L L+K H+ L +Y++ Y W
Sbjct: 623 REKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQKEHVLKLLNSEYDDYDGDEGYNWT 682
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
LV G+VEY+D EEET MIAM
Sbjct: 683 SLVNDGIVEYVDAEEEETIMIAM 705
>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
T-34]
Length = 1240
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/678 (52%), Positives = 469/678 (69%), Gaps = 53/678 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI A+F+EKGLVR QLDSF+EF+ ++Q +VE+ + L+ QH+ +
Sbjct: 51 ITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDK 110
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY ++F QIYL+KPT E DGS + + P EAR RNLTYSA L+VD+T+ V+ Q E+ +
Sbjct: 111 TRRYEIEFGQIYLNKPTMTESDGSSAQLFPQEARYRNLTYSASLFVDVTQKVLVQSEDEL 170
Query: 121 --------TTQHQKS-------FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+H K+ FIGK+PIML+S +C L GL D LNECP D GGYF
Sbjct: 171 DLNGDAAWVPEHGKTDVDEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYF 230
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+MA N VYVFS + + EIRS +E + ST+ V + +R
Sbjct: 231 VINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRN- 289
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
K+ I A LPYI+ +IPI+IVFRALG V DR++L+HI YDF+D M+EM+KP
Sbjct: 290 ---KEKTANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPC 346
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++EAFVIQ+++VAL+FIG RG G+++ +R YA+EILQKEMLPHV S+ TKKAYF
Sbjct: 347 IEEAFVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHVSTSEGSNTKKAYF 406
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
GYM+HRLLLA+L RRE+DDRDH+ V + QK ++
Sbjct: 407 FGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVE 466
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
++F+++ A+K+ IT+GLRYSLATGNWGDQKKA QA+AGVSQVLNR FAS+LSHLRR
Sbjct: 467 EHREFHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRR 526
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ++VG+ +PI+EF
Sbjct: 527 TNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEF 586
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEE+ +++L ++ A A ATK+FVNG W+G H DP QL+ TLR LRR+ D I EVS++
Sbjct: 587 LEEFGLDSLVDMQ-VAHAKATKVFVNGVWMGTHDDPGQLVDTLRDLRRK-DDISHEVSVV 644
Query: 559 RDIRDREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKE---RDYNNYGWQVLVQS 613
RDIR+RE+RI+TDA R+ RP+ I + +LL+KK H++ + + + W LVQ
Sbjct: 645 RDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKHHVEMIGQPVPATGEEFRWTQLVQE 704
Query: 614 GVVEYIDTLEEETTMIAM 631
GV+EY+D EEE+ +I M
Sbjct: 705 GVIEYLDAEEEESVLICM 722
>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1184
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/686 (53%), Positives = 467/686 (68%), Gaps = 67/686 (9%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEV-- 58
+ QE W VI++YF+EKGLVRQQLDSFDEF+ ++Q IV+ P + L AE Q+ +
Sbjct: 6 ITQEDAWTVISSYFEEKGLVRQQLDSFDEFVTNTMQEIVDSQPDLVLTAEPQYLPGQRSE 65
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--QG 116
+ RY++ F Q+ LSKPT E G P+ PN+ARLRNLTYS+ LY D+T T V G
Sbjct: 66 DLDKRYVVSFGQLSLSKPTFTEDTGETRPLYPNQARLRNLTYSSALYCDVTVTEVNLESG 125
Query: 117 EEPVTTQHQ--KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
+E T+QH + F+G+IPIML+S +C L L DL EL ECP D GGYF+INGSEKV+
Sbjct: 126 KEE-TSQHPPIRVFLGRIPIMLKSQFCHLYNLEPWDLAELGECPYDQGGYFVINGSEKVI 184
Query: 175 IAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQE+M +N V+VF + SKY+Y E RS + +RP S L V ++ RGG K G
Sbjct: 185 IAQERMTSNHVFVFKRSQPSKYSYVAECRSAPDSGNRPPSLLQVKLL-RGG---AKGISG 240
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I +PYIKQ+IP++IVFRALGF DR+I+ HI Y+F D E+M + PS++EA VIQ+
Sbjct: 241 QYIRVSMPYIKQDIPVIIVFRALGFENDREIMSHICYNFQDEELMTFLMPSIEEAAVIQD 300
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
VAL++IG RG VTK++RI+YARE+LQKE LPH+G+ + CE KK YFLGY+++RLL
Sbjct: 301 HLVALDYIGKRGNTIAVTKDKRIQYAREVLQKEFLPHIGIGEGCELKKGYFLGYVINRLL 360
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
+LGRRE+DDRDHY R Q+ +D GK NL+
Sbjct: 361 STALGRREVDDRDHYGNKRLDLAGPLLGEMFRHHLRRVLKETRSILQRNLDTGKGLNLQG 420
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
A+K++ IT+GL+ +LATGNW + R GVSQVLNRLT+AS+LSHLRR+NSPIGR+G
Sbjct: 421 AVKSRTITNGLKNALATGNW------IRGRTGVSQVLNRLTYASTLSHLRRLNSPIGREG 474
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHNT WGMICPAETPEG A GL KNLALMAYISVG+ +P++EFLEEWSMENL
Sbjct: 475 KLAKPRQLHNTHWGMICPAETPEGQACGLTKNLALMAYISVGTPSAPVIEFLEEWSMENL 534
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EI+PS + ATK+FVNG WVGIHR+PE L+ TL++LRRQ I EVSI+ D + +E+R
Sbjct: 535 LEISPSVVPLATKVFVNGAWVGIHREPEDLVRTLKELRRQ-GTIKEEVSIVMDHQFKELR 593
Query: 568 IHTDAGRICRPLLIAE----------------------NGSLLLKKRHIDNLKERDYNNY 605
I+TD GR+CRPL I +L +KK HID LK D +
Sbjct: 594 IYTDPGRVCRPLFIVNPPPPPISFEDANEDTNVFGQRPPQTLAIKKSHIDMLKRTDGDRC 653
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
+ LV++G++EY+D EEETTMIAM
Sbjct: 654 SFSFLVENGLIEYVDVNEEETTMIAM 679
>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
Length = 1228
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/686 (51%), Positives = 466/686 (67%), Gaps = 68/686 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI ++F EKGLV QQLDSFDEFI+ ++Q ++ + + L AQHTS + R
Sbjct: 20 EDCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTSEKDSKNKR 79
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV----------- 112
Y + F ++Y+SKP+ E DG+ PM P EARLRNLTYSAPLYVD++K V
Sbjct: 80 YEITFGKMYISKPSQTEGDGTTHPMFPQEARLRNLTYSAPLYVDMSKKVFESDDNNRVDN 139
Query: 113 -------VRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ QGE+ + ++GK+PIM+RS +C+L L + ++ EL ECP D GGYF
Sbjct: 140 ELEWKEQIVQGED----SDSQVYLGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGYF 195
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS +E SR S + + + R
Sbjct: 196 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISAMQIKLYGRD- 254
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+KS+ + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 255 ---EKSSSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPC 311
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 312 VEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFF 370
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 371 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVE 430
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 431 NDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 490
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PI F
Sbjct: 491 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPISSF 550
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
L +W +E LE+ PS DAT++FVNG WVG+HR+P L+ +R LRR D I EVSII
Sbjct: 551 LRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNGD-ISPEVSII 609
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN------NY 605
RDIR++E++I TDAGR+ RPL I ++ G L LKK H++ L E Y+ +Y
Sbjct: 610 RDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHVNRLLESSYDGDEDEPSY 669
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W LV+ G+VEY+D EEET MIAM
Sbjct: 670 TWSSLVREGIVEYVDAEEEETIMIAM 695
>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1238
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/707 (50%), Positives = 467/707 (66%), Gaps = 76/707 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + + L AQHTS + R
Sbjct: 25 EDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQHTSEKDHDNKR 84
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+P+YVD+TK V
Sbjct: 85 YEINFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPIYVDMTKRVFTSDDNKRIDN 144
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+GE+ + K ++GK+PIMLRS +C+L L + + EL ECP D GGYF
Sbjct: 145 ELEWHEIDVEGEKKTS----KVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYF 200
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R
Sbjct: 201 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD- 259
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+K + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 260 ---EKGTSARTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDQNDWQMLEMLKPC 316
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 317 VEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFF 375
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 376 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVE 435
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 436 NDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 495
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 496 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSDPILSF 555
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
L +W +E LE+ P+ D T++FVNG WVG+HR+P L+ +R LRR DI EVS+I
Sbjct: 556 LRDWGLEPLEDYTPANSPDVTRVFVNGVWVGVHREPASLVDYMRDLRRNGDI-SPEVSLI 614
Query: 559 RDIRDREIRIHTDAGRICRPLLI-------AENGSLLLKKRHIDNLKERDYNNYGWQVLV 611
RDIR++E +I TDAGR+ RPL I A G L L+K H++ L E Y Y
Sbjct: 615 RDIREKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKEHVNQLLESSYEGY------ 668
Query: 612 QSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
D +E+ W LV+ G+VEY+D EEET MIAM+P
Sbjct: 669 --------DEDDEDAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTP 707
>gi|68300792|gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
Length = 853
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/576 (60%), Positives = 422/576 (73%), Gaps = 56/576 (9%)
Query: 88 MMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYCLL 143
+ P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC +
Sbjct: 5 LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTV 64
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIR 202
+++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E+R
Sbjct: 65 YQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVR 124
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVAD+
Sbjct: 125 SMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 182
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREI 322
DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVT+E+RIKYA+EI
Sbjct: 183 DILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTREKRIKYAKEI 242
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
LQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 243 LQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGG 302
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 303 LFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGT 361
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A GL
Sbjct: 362 RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGL 421
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VGS +PILEFLEEWS EN EEI+P+ I ATKIFVNGCWV ++
Sbjct: 422 VKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVDVN----- 476
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
+EV +IRDIR +E+R++TD GR RPL I E LL+KK+ I
Sbjct: 477 ----------------TEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKDIQA 520
Query: 597 LKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++R+ + + GW LV G +EY+DT EEETTMI+M
Sbjct: 521 LQQRESHEDGGWHDLVAKGFIEYVDTEEEETTMISM 556
>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
Length = 1179
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/674 (54%), Positives = 466/674 (69%), Gaps = 68/674 (10%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW +I ++FDEKGLVRQQLDSFDEF+Q ++Q +V++S + L QHT E +
Sbjct: 73 QEDCWTIITSFFDEKGLVRQQLDSFDEFVQNTMQELVDESADLILDQSDQHTGAENDATK 132
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE-EPVT 121
RY ++F QIYLS+PT E DGS P+ P EA PLYVD+TK V+ E E
Sbjct: 133 RYEIRFGQIYLSRPTITEADGSVVPVFPQEA--------PPLYVDMTKRVLHGFEDENGE 184
Query: 122 TQHQ-----------KSFIGK----IPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
TQ + K +IGK IP+ L S +DL +LNECPLD GGYFI
Sbjct: 185 TQFRPEGNGLEERADKVWIGKVGRNIPLCLES----------KDLYDLNECPLDQGGYFI 234
Query: 167 INGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
INGSEKVLIAQE+MA N VYVF+ + S ++ +EIRS +E + ST+ V M R
Sbjct: 235 INGSEKVLIAQERMAGNHVYVFAKAQPSPISFLSEIRSAVEKGGKTISTMQVKMFHRN-- 292
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
+ +G I A LPYIK +IPI +VFRALG +DRDILEHI YD DD M+EM+KP +
Sbjct: 293 --QDKTLGNVIRASLPYIKNDIPIWVVFRALGVTSDRDILEHICYDRDDTSMLEMLKPCI 350
Query: 286 DEAFVIQEQNV----ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKK 341
DE FVIQE+ V AL+FIG+RG G+ KE+R++YA+EILQKEMLPH+ +++ ETKK
Sbjct: 351 DEGFVIQERIVSGQNALDFIGSRGTTTGLNKEKRLRYAQEILQKEMLPHISMAEGSETKK 410
Query: 342 AYFLGYMVHRLLLASLGRRELDDRDHY---------------VRMYAQKF----IDRGKD 382
A+F GYM+HRLLLA+L RRELDDRDH+ RM +K ++ ++
Sbjct: 411 AFFFGYMIHRLLLAALDRRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDCVESNRE 470
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
F L LA+K IT+GL+YSLATGNWGDQKK+ A+AGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 471 FQLRLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFASTLSHLRRCNTP 530
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISVGS P++EFLEEW
Sbjct: 531 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSGPVIEFLEEW 590
Query: 503 SMENLEE-IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+E+LEE +A A ATK+FVNG W+GIHRD L+ TL +LRR MD I SEVSI+RDI
Sbjct: 591 GLESLEENVATGNSASATKVFVNGVWLGIHRDAPNLVKTLHRLRR-MDHINSEVSIVRDI 649
Query: 562 RDREIRIHTDAGRICRPLLIA-ENGSLLLKKRHIDNLK---ERDYNNYGWQVLVQSGVVE 617
R++E+RI+TDAGRICRPL I E L LKK+H++ L+ + + + W+ LV+ GV+E
Sbjct: 650 REKELRIYTDAGRICRPLFIVDEQQKLTLKKKHVEWLQNGVDEEGQEFKWKQLVKRGVIE 709
Query: 618 YIDTLEEETTMIAM 631
+D EEET MI+M
Sbjct: 710 LLDADEEETVMISM 723
>gi|68131892|gb|AAY85224.1| RNA polymerase II second largest subunit [Nepenthes maxima]
Length = 667
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/614 (59%), Positives = 439/614 (71%), Gaps = 71/614 (11%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYSAPLYVD+TK V+++G EE Q K FIGK+PIMLRS+YC
Sbjct: 3 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVSEAQDFTKVFIGKVPIMLRSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
L +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E
Sbjct: 63 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E+ +RP ST++V M++R G S+ Q I A LPYI+ EIPI+I+FRALGFVA
Sbjct: 123 VRSMAENQNRPPSTMFVRMLSRAGAKGGGSSG-QYIKATLPYIRTEIPIIIIFRALGFVA 181
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVT+E+RIKYA+
Sbjct: 182 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAK 241
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 242 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 301
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Y QK +D+GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 302 GGLFRMLFRKLTRDVRAYVQKCVDQGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 360
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA-- 472
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG
Sbjct: 361 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 420
Query: 473 ----------------------------------AVGLVKNLALMAYISVGSQPSPILEF 498
A GLVKNLALM YI+VGS PILEF
Sbjct: 421 GLVKNLALMVYITVGSAAYPILEFLEEWSTENFEACGLVKNLALMVYITVGSAAYPILEF 480
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEWS EN EEI+P+ I ATKIFVNGCWVGIHRDP+ L+ TLR+LRR++D + +EV ++
Sbjct: 481 LEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRDPDLLVKTLRQLRRRVD-VNTEVGVV 539
Query: 559 RDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVE 617
RDIR +E+RI+TD GR RPL I E LL+KK+ I L++R+ + GW LV G +E
Sbjct: 540 RDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRESPDEGGWHDLVAKGFIE 599
Query: 618 YIDTLEEETTMIAM 631
YIDT EEETTMI+M
Sbjct: 600 YIDTEEEETTMISM 613
>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
Length = 1228
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/686 (51%), Positives = 465/686 (67%), Gaps = 68/686 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI ++F EKGLV QQLDSFDEFI+ ++Q ++ + + L AQHTS + R
Sbjct: 20 EDCWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTSDKDNKNKR 79
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV----------- 112
Y + F ++Y+SKP+ E DG+ M P EARLRNLTYSAPLYVD++K V
Sbjct: 80 YEITFGKMYISKPSQTEGDGTTHLMFPQEARLRNLTYSAPLYVDMSKKVFESDDNNRKDN 139
Query: 113 -------VRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ QGE+ K ++GK+PIM+RS +C+L L + ++ EL ECP D GGYF
Sbjct: 140 ELEWKEQIVQGED----SDSKVYMGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGYF 195
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R
Sbjct: 196 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD- 254
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+KS+ + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 255 ---EKSSSARTIRATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPC 311
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 312 VEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFF 370
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 371 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVE 430
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 431 NDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 490
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PI F
Sbjct: 491 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPISSF 550
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
L +W +E LE+ PS DAT++FVNG WVG+HR+P L+ +R LRR D I EVSII
Sbjct: 551 LRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNGD-ISPEVSII 609
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN------Y 605
RDIR++E++I TDAGR+ RPL I ++ G L L+K H++ L E Y+ Y
Sbjct: 610 RDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLRKEHVNQLLESSYDGLDDEPTY 669
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W LV+ G+VEY+D EEET MIAM
Sbjct: 670 TWSSLVREGIVEYVDAEEEETIMIAM 695
>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris
CBS 7435]
Length = 1227
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/694 (51%), Positives = 465/694 (67%), Gaps = 72/694 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+A+F+EKGLV QQLDSFDEF++ S+Q +V + P++ L AQHT+ + R
Sbjct: 15 EDCWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEKDNINKR 74
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV---------- 113
Y ++F +IYLS+PT E DG+ M P EARLRNLTYS+P+Y+D+ K++
Sbjct: 75 YEIRFGKIYLSRPTMTEADGTTHAMFPQEARLRNLTYSSPVYLDMEKSMFTSIDDEGNPN 134
Query: 114 -----RQGEEPV---TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+Q EP+ + K IGK+PIMLRS +C L L + DL ++ ECP D GGYF
Sbjct: 135 ATLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKECPYDMGGYF 194
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR ST+ + + R
Sbjct: 195 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISTMQIKLYGR-- 252
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+ G+ I A LPY+KQ+IPI+IVFRALG V D +IL+HI YD +D +M+EM+KP
Sbjct: 253 ---EDKGTGRTIKATLPYVKQDIPIVIVFRALGVVPDGEILQHICYDENDWQMLEMLKPC 309
Query: 285 LDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 343
++E FVIQ++ VAL+FIG RG A G+ +E+RI+YA++ILQKE+LPH+ + ET+K +
Sbjct: 310 IEEGFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGFETRKTF 369
Query: 344 FLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFI 377
FLGYMV+RLLL +L R++ DDRDH+ + Y Q+ I
Sbjct: 370 FLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYRYMQRCI 429
Query: 378 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLR 437
+ +DFNL LA+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLR
Sbjct: 430 ETDRDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLR 489
Query: 438 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 497
R N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+L++ IS+GS PI+
Sbjct: 490 RTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPSEPIIN 549
Query: 498 FLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSI 557
FLEEW ME LE+ P+ +T+IFVNG W GIHRDP L+ T+R LRR I EVSI
Sbjct: 550 FLEEWGMEPLEDYDPAQHTKSTRIFVNGVWTGIHRDPSMLVSTMRDLRRS-GAISPEVSI 608
Query: 558 IRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHI-------------DNL 597
IRDIR+RE +I TD GR+ RPL I E+ G L + K HI D+
Sbjct: 609 IRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHIRKIQQGYDDDAMNDDS 668
Query: 598 KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+E++ + YGW LV SGV+EY+D EEET MIAM
Sbjct: 669 EEQEQDVYGWSSLVTSGVIEYVDGEEEETIMIAM 702
>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
Length = 1234
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/688 (51%), Positives = 460/688 (66%), Gaps = 63/688 (9%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI ++F EKGLV QQLDSFDEF++ S+Q +V + + L AQHTS +
Sbjct: 20 ITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHE 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---- 116
RY + F +IY+SKP+ E DGS + P EARLRNLTYS+PLYVD+T V +
Sbjct: 80 NKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKR 139
Query: 117 ---------EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
EEP K F+GK+PIMLRS +C+L L + + EL ECP D GGYF+I
Sbjct: 140 KDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVI 199
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R
Sbjct: 200 NGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD--- 256
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
+K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++
Sbjct: 257 -EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVE 315
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLG
Sbjct: 316 EGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLG 374
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YMV+RLLL +L R+E DDRDH+ + Y Q+ ++ G
Sbjct: 375 YMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENG 434
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
DFN+ LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N
Sbjct: 435 GDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 494
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FL
Sbjct: 495 TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLR 554
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
++ +E LE+ PS D+T++FVNG WVG+HRDP L+ +R+LRR D + EVSIIRD
Sbjct: 555 DYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGD-LSPEVSIIRD 613
Query: 561 IRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL----------KERDYN 603
IR++E +I TDAGR+ RPL I ++ G L + K HI L ++ D
Sbjct: 614 IREKEFKIFTDAGRVYRPLFIVDDNPESETKGELKITKEHIKQLLRSDELDEDDEDYDNT 673
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W LV G+VEY+D EEET MIAM
Sbjct: 674 RYTWSSLVADGIVEYVDAEEEETIMIAM 701
>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans
WO-1]
Length = 1234
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/688 (51%), Positives = 461/688 (67%), Gaps = 63/688 (9%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI ++F EKGLV QQLDSFDEF++ S+Q +V + + L AQHTS +
Sbjct: 20 ITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHE 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---- 116
RY + F +IY+SKP+ E DGS + P EARLRNLTYS+PLYVD+T V +
Sbjct: 80 NKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKR 139
Query: 117 ---------EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
EEP K F+GK+PIMLRS +C+L L + + EL ECP D GGYF+I
Sbjct: 140 KDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVI 199
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R
Sbjct: 200 NGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD--- 256
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
+K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++
Sbjct: 257 -EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVE 315
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLG
Sbjct: 316 EGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLG 374
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YMV+RLLL +L R+E DDRDH+ + Y Q+ ++ G
Sbjct: 375 YMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENG 434
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
DFN+ LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N
Sbjct: 435 GDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 494
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FL
Sbjct: 495 TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLR 554
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
++ +E LE+ PS D+T++FVNG WVG+HRDP L+ +R+LRR D + EVSIIRD
Sbjct: 555 DYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGD-LSPEVSIIRD 613
Query: 561 IRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL----------KERDYN 603
IR++E +I TDAGR+ RPL I ++ G L + K H+ L ++ + +
Sbjct: 614 IREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLLRSDELDEDDEDYENS 673
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W LV G+VEY+D EEET MIAM
Sbjct: 674 RYTWSSLVADGIVEYVDAEEEETIMIAM 701
>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
Length = 1210
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/688 (51%), Positives = 461/688 (67%), Gaps = 63/688 (9%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI ++F EKGLV QQLDSFDEF++ S+Q +V + + L AQHTS +
Sbjct: 20 ITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHE 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG---- 116
RY + F +IY+SKP+ E DGS + P EARLRNLTYS+PLYVD+T V +
Sbjct: 80 NKRYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKR 139
Query: 117 ---------EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
EEP K F+GK+PIMLRS +C+L L + + EL ECP D GGYF+I
Sbjct: 140 KDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVI 199
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R
Sbjct: 200 NGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD--- 256
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
+K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++
Sbjct: 257 -EKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVE 315
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLG
Sbjct: 316 EGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLG 374
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YMV+RLLL +L R+E DDRDH+ + Y Q+ ++ G
Sbjct: 375 YMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENG 434
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
DFN+ LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N
Sbjct: 435 GDFNVTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 494
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FL
Sbjct: 495 TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLR 554
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
++ +E LE+ PS D+T++FVNG WVG+HRDP L+ +R+LRR D + EVSIIRD
Sbjct: 555 DYGLEVLEDYVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGD-LSPEVSIIRD 613
Query: 561 IRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL----------KERDYN 603
IR++E +I TDAGR+ RPL I ++ G L + K H+ L ++ + +
Sbjct: 614 IREKEFKIFTDAGRVYRPLFIVDDNPDSETKGELKITKEHVKQLLRSDELDEDDEDYENS 673
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W LV G+VEY+D EEET MIAM
Sbjct: 674 RYTWSSLVADGIVEYVDAEEEETIMIAM 701
>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
Length = 923
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/539 (63%), Positives = 411/539 (76%), Gaps = 32/539 (5%)
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
T + K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVLIAQEKM
Sbjct: 14 TQEFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 73
Query: 181 ATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
+TN VYVF + +KYAY E+RS E +RP S+++V M++R S K + GQ I A
Sbjct: 74 STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRA--SAKGGSSGQYIRAT 131
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL+
Sbjct: 132 LPYIRTEIPIIIVFRALGFVADKDILEHICYDFLDTQMMELLRPSLEEAFVIQNQQVALD 191
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
+IG RG+ GVT+E+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGR
Sbjct: 192 YIGKRGSTVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGR 251
Query: 360 RELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKI 393
R DDRDHY VR Y QK +D GK+ NL+ AIK K
Sbjct: 252 RPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKEVNLQFAIKAKT 311
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPR
Sbjct: 312 ITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPR 370
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS +PILEFLEEWS EN EEI+P+
Sbjct: 371 QLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPA 430
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
I ATKIFVNGCWVGIHR+PE L+ TLRKLRRQ+D + +EV +IRDI +E+R++TD G
Sbjct: 431 VIPQATKIFVNGCWVGIHRNPELLVNTLRKLRRQVD-VNTEVGVIRDIHLKELRLYTDYG 489
Query: 574 RICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
R RPL I E LL+KK+ I L++R+ + GW LV G +EY+DT EEETTMI+M
Sbjct: 490 RCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGYIEYVDTEEEETTMISM 548
>gi|403284743|ref|XP_003933716.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2, partial [Saimiri boliviensis boliviensis]
Length = 992
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/440 (76%), Positives = 372/440 (84%), Gaps = 47/440 (10%)
Query: 10 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFE 69
+++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE PPRYLLKFE
Sbjct: 1 LSSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYLLKFE 60
Query: 70 QIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFI 129
QIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE + TQHQK+FI
Sbjct: 61 QIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFI 120
Query: 130 GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS 189
GKIPIM + LLN + L S+ VLIAQEKMATNTVYVF+
Sbjct: 121 GKIPIM----FDLLNFMAVTFLM-----------------SKXVLIAQEKMATNTVYVFA 159
Query: 190 MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPI 249
KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LPYIKQE+PI
Sbjct: 160 KKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPI 219
Query: 250 MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPG 309
+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFIG+RGA+PG
Sbjct: 220 IIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPG 279
Query: 310 VTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY- 368
VTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRELDDRDHY
Sbjct: 280 VTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 339
Query: 369 -------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLA 403
VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLA
Sbjct: 340 NKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLA 399
Query: 404 TGNWGDQKKAHQARAGVSQV 423
TGNWGDQKKAHQARAGVSQV
Sbjct: 400 TGNWGDQKKAHQARAGVSQV 419
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 76/95 (80%)
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLV 611
VS+VS+IRDIR+REIRI+TDAGRICRPLLI E LLLKKRHID LKER+YNNY WQ LV
Sbjct: 416 VSQVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLV 475
Query: 612 QSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 476 ASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 510
>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1240
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/707 (50%), Positives = 462/707 (65%), Gaps = 66/707 (9%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI+++F EKGLV QQLDSFDEF++ S+Q +V + + L AQHTS
Sbjct: 20 ITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSVADHK 79
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY ++F +IY+SK + E DG+ + P EARLRNLTYS+PLYVD+TK +
Sbjct: 80 NKRYEIEFGKIYISKTSQTEGDGTTHSVFPQEARLRNLTYSSPLYVDMTKRKFESDDNKR 139
Query: 121 TTQ---------------HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
K F+GK+PIMLRS +C+LNGL + + EL ECP D GGYF
Sbjct: 140 KDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKFCMLNGLAEHEFYELKECPYDMGGYF 199
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 200 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD- 258
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 259 ---EKGVAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPC 315
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 316 VEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFF 374
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 375 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRCVE 434
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
DFNL LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 435 NDSDFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRR 494
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVGS PIL F
Sbjct: 495 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSSSEPILGF 554
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
L ++ +E LE+ PS D+T+IFVNG WVG+HRDP QL+ +R LRR DI EVSII
Sbjct: 555 LRDFGLEVLEDYVPSNAPDSTRIFVNGVWVGVHRDPAQLVDYVRDLRRSGDI-SPEVSII 613
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLV 611
RDIR++E +I TDAGR+ RPL I ++ G L++ K HI L V
Sbjct: 614 RDIREKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITKEHIRKL-----------VAE 662
Query: 612 QSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
E + E + W LV G+VEY+D EEET MIAMSP
Sbjct: 663 DMDDDELEEDEEGGESRKYTWSSLVSEGIVEYVDAEEEETIMIAMSP 709
>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
Length = 1206
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/665 (53%), Positives = 461/665 (69%), Gaps = 42/665 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
QE W VI A+FD+KGLVRQQLDSF+EF+ +++Q I++++P+I ++ E+QH E
Sbjct: 23 QEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAHEE 82
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT-VVRQGEEPV 120
Y++KF Q+YLS+P E+DG + P EARLRNLTY APLYVD+TKT RQ ++ V
Sbjct: 83 KEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTRQADDTV 142
Query: 121 TTQHQ---KSFIGKIPIMLRSTYCLLN-GLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
+ + +GK+PIML+S C L+ T+++ T L ECP D GGYF+INGSEKVLIA
Sbjct: 143 EEKQETLSHVHLGKVPIMLKSERCNLHEAATEQEATNLGECPYDQGGYFVINGSEKVLIA 202
Query: 177 QEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MA N VYVF + SKY + EIRS +E S+R S++ + M+A+G ++ I +
Sbjct: 203 QERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQ 262
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD-DPEMMEMVKPSLDEAFVIQEQ 294
I PYI+ E PI I+FRALGFV+DRDILEHI+YD D DP M+E ++ S++EA +Q Q
Sbjct: 263 I----PYIRAEFPIFILFRALGFVSDRDILEHIVYDLDSDPAMLEALRASVEEAQEVQTQ 318
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
ALN++G RG G +K RI+YAR +L KE+LPH+G +F ET+K YF+GYMVHRL+L
Sbjct: 319 EEALNYLGKRGTVTGASKADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLML 378
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
+LGRR DDRDHY +RM+AQ+ +D GK+ N+ A
Sbjct: 379 VALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMHAQRMVDAGKEINVLSA 438
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
I KIIT GL+YSLATGNWG+Q K RAGVSQVL RLT+AS+LSHLRRVNSPIGR+GK
Sbjct: 439 INEKIITRGLKYSLATGNWGEQGK-QGIRAGVSQVLARLTYASTLSHLRRVNSPIGREGK 497
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
LAKPRQLHN+LWGM CPAETPEG AVGLVKN+ALM YI+VG+ P++ LEE++ E L+
Sbjct: 498 LAKPRQLHNSLWGMFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTEALD 557
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
E+ P+ IA ATK+F+NG W+GI RDP L+ LR +RRQ+ +EVSII D +E+RI
Sbjct: 558 EVTPADIAAATKVFINGVWLGIQRDPTALIKNLRAMRRQV-AFSTEVSIIYDGPLKELRI 616
Query: 569 HTDAGRICRPLLIAENGSLLLKKRHIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEET 626
TD GR RPL I E+ LL+ K HI L D Y W LVQ G+VEYID EEET
Sbjct: 617 FTDYGRTSRPLYIVEDNRLLVTKNHIRRLISPLPDEEEYAWPQLVQDGLVEYIDAEEEET 676
Query: 627 TMIAM 631
TMIAM
Sbjct: 677 TMIAM 681
>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1
ERTm2]
Length = 1137
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/685 (51%), Positives = 479/685 (69%), Gaps = 39/685 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTST-EVE 59
L QE CW V++A+F +KGLVRQQLDSF+EFIQ ++Q +V+++ +I L A H+ T E E
Sbjct: 4 LTQEDCWKVVSAFFKDKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLMA---HSPTGEEE 60
Query: 60 TPPRYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
+Y ++F+QIY+SKP T E DG SPM PN+AR+R+LTYSA LY+DI KT EE
Sbjct: 61 KARKYTIEFKQIYVSKPPTITEPDGRTSPMFPNDARVRSLTYSASLYIDIVKTEHIGDEE 120
Query: 119 PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
+ +++ IG IPIMLRS YC+ + D+D+ + EC D GGYFI+NGSEKVLIA E
Sbjct: 121 VESRTYKRMPIGSIPIMLRSLYCVYSNTDDKDMNRIEECTYDQGGYFIVNGSEKVLIAHE 180
Query: 179 KMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+MA+N VY+F S Y Y E+RS +H R S+L + ++AR S S G +
Sbjct: 181 RMASNLVYIFKKAPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVAR--SSDNASGGGYFLR 238
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A+LP+ KQ++P++++FRALGFV+D++ILEHI YDF D EM+ M++PS++EAFVIQ+Q VA
Sbjct: 239 ALLPHAKQDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEAFVIQDQGVA 298
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG R A G +KE+RIK+A+++ Q+E LPHVG +FCETKKAY LGY +++LL+ +L
Sbjct: 299 LDYIGKRVAPAGFSKEKRIKFAKDLFQREFLPHVGTKEFCETKKAYLLGYTINKLLMVAL 358
Query: 358 GRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKT 391
GRR +DRDHY R Y Q+ ID KD NL + ++T
Sbjct: 359 GRRSEEDRDHYGRKRLDLAGPLMAGLFRMLFKKMSNELAKYMQRCIDGNKDLNLIVGLRT 418
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
+T+GLRYSLATGNWG+Q K+ QARAGV+QVLNR + S+LSHLRRVN+PIGRDGKLAK
Sbjct: 419 STLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDGKLAK 478
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
PRQLH++ WGM+CPAETPEG A GLVKN ALM++ISVGS S ++E LEE +E LEE++
Sbjct: 479 PRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHISVGSNSSIVVELLEECGLEGLEEVS 538
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
P+AIA ATK+ VNG WVG+HR P+ L+GTL+ LRR + + SE+ I+RD+R++EIRI+TD
Sbjct: 539 PTAIAGATKVLVNGSWVGVHRSPDDLIGTLKYLRRSGE-LSSEIGIVRDLREKEIRINTD 597
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPL I E G +L+ H L+ + + W L+ G VE++D EEET MIA+
Sbjct: 598 GGRACRPLFIVEKG--VLRIEHF--LEANRHRAFTWDELMADGCVEFLDVEEEETAMIAV 653
Query: 632 WQVLVQSGVVEYIDTLEEETTMIAM 656
+++ + Y + TM+ +
Sbjct: 654 KTSDLRNTEIMYTHCEIQPATMLGV 678
>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
513.88]
Length = 1231
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/687 (50%), Positives = 461/687 (67%), Gaps = 59/687 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + EV+
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ +TK ++ E
Sbjct: 80 VVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRER 139
Query: 119 PVT-------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSE 171
V + + FIGK+PIML+S YC+L L+++ L NECP D GGYFIINGSE
Sbjct: 140 LVADRDDDDMAKEETVFIGKMPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFIINGSE 199
Query: 172 KVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A NTV VF S Y EIRS +E SR S L + + A+G + K
Sbjct: 200 KVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSA--KG 257
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
G I + LPY+K +IPI++VFRALG V+D DIL HI YD +D M+EM+KP ++E FV
Sbjct: 258 GFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 317
Query: 291 IQEQNVALNFIGARGA-RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL+FI RG+ + + ERR++YAREI+QKE LPH+ S+ ET+KA+FLGYMV
Sbjct: 318 IQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGYMV 377
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLL +LGRR++DDRDH+ ++ Y Q+ ++ ++
Sbjct: 378 HRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNREI 437
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
L + IK +T GL+Y+LATGNWG+QKKA A+AGVSQVL+R T+AS+LSHLRR N+PI
Sbjct: 438 YLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPI 497
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ + +
Sbjct: 498 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRN 557
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVGIHRDP L+ T+ LRR+ ++I EVS+IRDIR+
Sbjct: 558 MEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNTMLSLRRR-NMISHEVSLIRDIRE 616
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE------------RDYNN 604
RE +I TDAGR+CRPL + +N GSL+L K HI L++ R
Sbjct: 617 REFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEHIRKLEQDKDLPPDLDPEDRRERY 676
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW LV+SGVVEY+D EEET MI M
Sbjct: 677 FGWDGLVKSGVVEYVDAEEEETIMIVM 703
>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1241
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/704 (50%), Positives = 466/704 (66%), Gaps = 72/704 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI S+Q +V + + L+ AQH + + +
Sbjct: 42 EDCWTVISSFFREKGLVSQQLDSFDEFINTSIQELVWEDSTLILEQPAQHITEDDNINRK 101
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK------------T 111
Y +KF +I+LS+PT E DG+ M P EARLRNLTY+APL+V++ K T
Sbjct: 102 YEIKFGKIFLSRPTMTESDGTTQQMFPQEARLRNLTYAAPLFVEMDKITYETIDGTNDWT 161
Query: 112 VVRQGEEPVT----TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
V++ E ++K +IG++PIML+S YCLL L + ++ L ECP D GGYF+I
Sbjct: 162 VIKDEVEDELDDDGNDNKKVYIGRVPIMLKSKYCLLRDLEEEEMYSLKECPYDMGGYFVI 221
Query: 168 NGSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R +
Sbjct: 222 NGSEKVLIAQERSAANIVQVFKKSAPSPVSHVAEIRSALEKGSRLISSMQIKLYGRDDK- 280
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
G+ I A LPYIKQ+IPI+IVFRALG V D DILEHI YD +D +M EM+KP ++
Sbjct: 281 ----GSGRTIKATLPYIKQDIPIVIVFRALGIVPDGDILEHICYDQNDWQMFEMLKPCVE 336
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E FVIQ++ VAL+FIG RG G+ +E+RI+YA++ILQKE LPH+ + E++KA+FLG
Sbjct: 337 EGFVIQDREVALDFIGRRGNALGIRREKRIQYAKDILQKEFLPHITQQEGFESRKAFFLG 396
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YMV+RLLL +L R+ DDRDH+ + Y Q+ ++
Sbjct: 397 YMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDIYRYMQRSVETD 456
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
DFNL+LA+K IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N
Sbjct: 457 TDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 516
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS PI+ FLE
Sbjct: 517 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSGSDPIIYFLE 576
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW ME LE+ P DAT+IFVNG W GIHRDP +L+ T+R LRR+ +I EVSIIRD
Sbjct: 577 EWGMEPLEDYLPHQAPDATRIFVNGVWHGIHRDPAKLISTMRNLRRRGEI-SPEVSIIRD 635
Query: 561 IRDREIRIHTDAGRICRPLLIAENGS------LLLKKRHIDNLKERDYNNYGWQVLVQSG 614
IR++E ++ TDAGR+ RPL + E+ L LK+ H+ + + +Y +Y
Sbjct: 636 IREKEFKVFTDAGRVYRPLFVVEDNEETGAKELALKREHVQKIVDTEYGDY--------- 686
Query: 615 VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ +EEE +W LV +G+VEY+D EEET MIAMSP
Sbjct: 687 -----EEMEEEP---FVWNSLVTNGIVEYVDAEEEETIMIAMSP 722
>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
RIB40]
Length = 1221
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/693 (50%), Positives = 462/693 (66%), Gaps = 65/693 (9%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L EV+
Sbjct: 5 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPDEDEVDP 64
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ ITK ++ E
Sbjct: 65 VVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRER 124
Query: 119 PVTTQ-------------HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
V + + FIGK+PIML+S YC+L L+++ L NECP D GGYF
Sbjct: 125 SVADRDDEEIEEDEDRKAQETVFIGKVPIMLKSKYCILKDLSEQALYNWNECPYDSGGYF 184
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
IINGSEKVLIAQE+ A NTV VF S Y EIRS +E SR S L + + A+G
Sbjct: 185 IINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGD 244
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+ K G I + LPY+K +IPI++VFRALG V+D DIL HI YD +D M+EM+KP
Sbjct: 245 SA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPC 302
Query: 285 LDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 343
++E FVIQ++ VAL+FI RG+ + + ERR++YAREI+QKE+LPH+ S+ ET+KA+
Sbjct: 303 IEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAF 362
Query: 344 FLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFI 377
FLGYMVHRLL +LGRR++DDRDH+ ++ Y Q+ +
Sbjct: 363 FLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCV 422
Query: 378 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLR 437
+ ++ L + IK +T GL+Y+LATGNWG+QKKA A+AGVSQVL+R T+AS+LSHLR
Sbjct: 423 ETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLR 482
Query: 438 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 497
R N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM Y++VG+ PI++
Sbjct: 483 RTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSEPIID 542
Query: 498 FLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSI 557
F+ + +ME LEE P +ATK+FVNG WVGIHRDP L+ T++ LRR+ ++I EVS+
Sbjct: 543 FMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNTMQSLRRR-NMISHEVSL 601
Query: 558 IRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE----------- 599
IRDIR+RE +I TDAGR+CRPL + +N G L+L K HI L++
Sbjct: 602 IRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVLNKEHIRKLEQDKELPPDLDPE 661
Query: 600 -RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
R +GW LV+SGVVEY+D EEET MI+M
Sbjct: 662 DRRERYFGWDGLVRSGVVEYVDAEEEETIMISM 694
>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1267
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/713 (49%), Positives = 459/713 (64%), Gaps = 88/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI+++FD KGLV QQ+DSFDEF+Q ++Q +VE++ Q+ L +S +
Sbjct: 23 EDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTLDQNNPPSSNDNPIALR 82
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY +KF I LS+P E DGS M+P EARLRNLTYS+PLY+++TK+ E PV
Sbjct: 83 RYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQVAVERPVPL 142
Query: 123 QH-------------------------------------QKSFIGKIPIMLRSTYCLLNG 145
++ ++GK+P+ML+S YC L
Sbjct: 143 NELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGPAPERVYVGKLPMMLKSEYCFLKN 202
Query: 146 LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSC 204
+ DL NECP D GGYFIINGSEKVLIAQE+ A N V VF + +Y EIRS
Sbjct: 203 CDEDDLYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPANQAVSYLAEIRSA 262
Query: 205 LEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDI 264
LE SR S+L + + +G + G+ + + LPYIKQ+IPI IVFRALG V+D DI
Sbjct: 263 LEKGSRLISSLQIKLYDKGDSG--RGGFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDI 320
Query: 265 LEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQ 324
L HI YD +D +M+EM+KP ++EAFVIQ++ VAL+FIG RG +T+++RIKYAR+I+Q
Sbjct: 321 LNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQ 380
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------- 368
KE+LPH+ + ET+KA+FLGYMVH+LL +LGRRE DDRDH+
Sbjct: 381 KELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLF 440
Query: 369 ----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
V Y Q+ ++ ++FNL L +K+ IT+GL+YSLATGNWGDQKKA + A
Sbjct: 441 RNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTA 500
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 501 GVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 560
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM Y++VG+ PI+EF+ + +ME LEE P +ATK+FVNG WVG+HRDP L+
Sbjct: 561 NLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGVHRDPAHLV 620
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
++ LRR +I EVS+IR+IRDRE +I TDAGR+CRPLL+ +N G+L+L K
Sbjct: 621 KCVQDLRRS-HLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNK 679
Query: 592 RHIDNLKERD-------------YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L++ + YG+Q L+ GVVEY+D EEET MI M
Sbjct: 680 DHIRRLEDDQSLPSNMDKDEKVHHGYYGFQGLINDGVVEYLDAEEEETVMITM 732
>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
[Piriformospora indica DSM 11827]
Length = 1223
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/675 (51%), Positives = 462/675 (68%), Gaps = 54/675 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE CW VI A+F+++GLVRQQLDSF+EFI ++Q IVEDS ++L+ QHT E +
Sbjct: 29 ITQEDCWTVIAAFFEKRGLVRQQLDSFNEFINNTIQDIVEDSGDLNLEQHEQHTGAETDK 88
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
R+ +KF Q+YL++P+ EKDG SP+ P EARLRNLTYSA L V+I V + +E V
Sbjct: 89 STRHKIKFGQVYLTRPSVTEKDGQVSPLFPQEARLRNLTYSATLMVEI----VEEKQEQV 144
Query: 121 TTQH---------------QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ + KIPIMLRS C L + D + +LNECP DPGGYF
Sbjct: 145 PNDEGGWDWERIPGSIPGFNRLPLAKIPIMLRSDICALYTIPDPEKYDLNECPDDPGGYF 204
Query: 166 IINGSEKVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
II+G EKVLIAQE+MA N VYVF+ + S ++ EIRS E + S+ V + +G
Sbjct: 205 IISGQEKVLIAQERMAGNHVYVFAKGQPSPISFLAEIRSVPERGGKLLSSFQVKLFHKG- 263
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
++K + G I A +PYIK ++PI I+FRA+G +ADRDILEHI YD D +M+EM+KP
Sbjct: 264 --IEKQS-GGAIRASVPYIKTDVPIWILFRAMGVLADRDILEHICYDGHDDQMLEMLKPC 320
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
+DE FV+Q + +AL+FIG RG P +++ERRI+YA+EI+QKE+LPH+ + + E +KAYF
Sbjct: 321 IDEGFVVQHREIALDFIGRRGNTPTISRERRIRYAQEIIQKELLPHISMEEGNEARKAYF 380
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
+GYM+HRLLLA+L RRE+DDRDH+ V Y QK ++
Sbjct: 381 VGYMIHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSTLFRMLFRKVVKDVYRYLQKCVE 440
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
GK F++ AIK I++GL+YSLATGNWGDQ+ A ++AGVSQVLNR T+AS+LSHLRR
Sbjct: 441 SGKAFDVGRAIKLGTISNGLKYSLATGNWGDQQNAMSSKAGVSQVLNRYTYASTLSHLRR 500
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISVGS +P+ EF
Sbjct: 501 TNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSYSAPVGEF 560
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
L+EW ME LEE A S +TK+F+NG W+G+HR+P QL+ TL+ LRR + I EVS++
Sbjct: 561 LDEWGMEALEENAQSD-RPSTKVFLNGVWMGVHREPTQLLNTLKHLRR-TEAIHPEVSVV 618
Query: 559 RDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKER--DYNNYGWQVLVQSGVV 616
RDIR++E+RI+TD+GR+CRPL + E LL+ + L++ D Y W L + GVV
Sbjct: 619 RDIREKELRIYTDSGRVCRPLFVVEKDKLLITPEQVARLRDEKDDPAGYRWDNLFKDGVV 678
Query: 617 EYIDTLEEETTMIAM 631
E +D EEET MI M
Sbjct: 679 ELLDAEEEETVMICM 693
>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
[Botryotinia fuckeliana]
Length = 1260
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/713 (49%), Positives = 465/713 (65%), Gaps = 88/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI+++F+ KGLV QQLDSFDEF+Q ++Q +VE++ Q+ L +S +
Sbjct: 23 EDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTLDQNNPPSSHDNPIALR 82
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY +KF I LS+P E DGS M+P EARLRNLTYS+PLY+++TK+
Sbjct: 83 RYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQVAVERPVPL 142
Query: 112 ----------VVRQGEEPV----------------TTQHQKSFIGKIPIMLRSTYCLLNG 145
+V GE P ++ +IGK+P+ML+S +C+L G
Sbjct: 143 NELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMMLKSEFCILKG 202
Query: 146 LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSC 204
L + +L NECP D GGYFIINGSEKVLIAQE+ A N V VF +S +Y EIRS
Sbjct: 203 LDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPANSAVSYLAEIRSA 262
Query: 205 LEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDI 264
LE SR S+L + + +G + + G+ + + LPYIK +IPI IVFRALG V+D DI
Sbjct: 263 LEKGSRLISSLQIKLYDKGDSN--RGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDI 320
Query: 265 LEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQ 324
L HI YD +D +M+EM+KP ++EAFVIQ++ VAL+FIG RG +T+++RIKYAR+I+Q
Sbjct: 321 LNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQ 380
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------- 368
KE+LPH+ + ET+KA+FLGYMVH+LL +LGRRE DDRDH+
Sbjct: 381 KELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLF 440
Query: 369 ----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
V Y Q+ ++ ++FNL L +K+ IT+GL+YSLATGNWGDQKKA + A
Sbjct: 441 RNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTA 500
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 501 GVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 560
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM Y++VG+ PI+EF+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 561 NLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLV 620
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
++ LRR +I EVS+IR+IRDRE +I TDAGR+CRPLL+ +N G+L+L K
Sbjct: 621 KCVQDLRRS-HLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNK 679
Query: 592 RHIDNL-----------KERDYNN--YGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L K+ N YG+Q L+ GVVEY+D EEET MI M
Sbjct: 680 DHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITM 732
>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
Length = 1207
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/713 (49%), Positives = 465/713 (65%), Gaps = 88/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI+++F+ KGLV QQLDSFDEF+Q ++Q +VE++ Q+ L +S +
Sbjct: 23 EDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTLDQNNPPSSHDNPIALR 82
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY +KF I LS+P E DGS M+P EARLRNLTYS+PLY+++TK+
Sbjct: 83 RYEIKFGTIMLSRPAMTEGDGSTQVMLPQEARLRNLTYSSPLYIEMTKSTQVAVERPVPL 142
Query: 112 ----------VVRQGEEPV----------------TTQHQKSFIGKIPIMLRSTYCLLNG 145
+V GE P ++ +IGK+P+ML+S +C+L G
Sbjct: 143 NELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLPMMLKSEFCILKG 202
Query: 146 LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSC 204
L + +L NECP D GGYFIINGSEKVLIAQE+ A N V VF +S +Y EIRS
Sbjct: 203 LDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPANSAVSYLAEIRSA 262
Query: 205 LEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDI 264
LE SR S+L + + +G + + G+ + + LPYIK +IPI IVFRALG V+D DI
Sbjct: 263 LEKGSRLISSLQIKLYDKGDSN--RGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDI 320
Query: 265 LEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQ 324
L HI YD +D +M+EM+KP ++EAFVIQ++ VAL+FIG RG +T+++RIKYAR+I+Q
Sbjct: 321 LNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQ 380
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------- 368
KE+LPH+ + ET+KA+FLGYMVH+LL +LGRRE DDRDH+
Sbjct: 381 KELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLF 440
Query: 369 ----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
V Y Q+ ++ ++FNL L +K+ IT+GL+YSLATGNWGDQKKA + A
Sbjct: 441 RNLFRRLTTDVYRYLQRCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTA 500
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 501 GVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 560
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM Y++VG+ PI+EF+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 561 NLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLV 620
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
++ LRR +I EVS+IR+IRDRE +I TDAGR+CRPLL+ +N G+L+L K
Sbjct: 621 KCVQDLRRS-HLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNK 679
Query: 592 RHIDNL-----------KERDYNN--YGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L K+ N YG+Q L+ GVVEY+D EEET MI M
Sbjct: 680 DHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITM 732
>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
reinhardtii]
Length = 1607
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/664 (53%), Positives = 460/664 (69%), Gaps = 41/664 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
QE W VI A+FD+KGLVRQQLDSF+EF+ +++Q I++++P+I ++ E+QH E
Sbjct: 14 QEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAAEE 73
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT-VVRQGEEPV 120
Y++KF Q+YLS+P E+DG + P EARLRNLTY APLYVD+TKT R GE V
Sbjct: 74 KEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTRVGENEV 133
Query: 121 TTQHQKSFI--GKIPIMLRSTYCLLN-GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
+ S + GK+PIML+S C L+ T+++ T L ECP D GGYF+INGSEKVLIAQ
Sbjct: 134 EEKTDLSHVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYFVINGSEKVLIAQ 193
Query: 178 EKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
E+MA N VYVF + SKY + EIRS +E S+R S++ + M+A+G ++ I +I
Sbjct: 194 ERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQI 253
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD-DPEMMEMVKPSLDEAFVIQEQN 295
PYI+ E PI I+FRALGFV+DRDILEHI+YD D DP M+E ++ S++EA +Q Q
Sbjct: 254 ----PYIRAEFPIFILFRALGFVSDRDILEHIVYDLDADPAMLEALRSSVEEAQEVQTQE 309
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
ALN++G RG G +K RI+YAR +L KE+LPH+G +F ET+K YF+GYMVHRL+L
Sbjct: 310 EALNYLGKRGTVTGASKADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLMLV 369
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+LGRR DDRDHY +RM AQ+ +D GK+ N+ AI
Sbjct: 370 ALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDAGKEINVISAI 429
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K+IT GL+YSLATGNWG+Q K RAGVSQVL RLT+AS+LSHLRRVNSPIGR+GKL
Sbjct: 430 NDKVITRGLKYSLATGNWGEQGK-QGIRAGVSQVLARLTYASTLSHLRRVNSPIGREGKL 488
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHN+LWG+ CPAETPEG AVGLVKN+ALM YI+VG+ P++ LEE++ E L+E
Sbjct: 489 AKPRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTEALDE 548
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
+ P+ IA +TK+F+NG W+GI RDP L+ LR +RRQ+ +EV+II D +E+RI
Sbjct: 549 VTPADIAASTKVFINGVWLGIQRDPTALIKNLRAMRRQV-AFSTEVAIIYDGPLKELRIF 607
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEETT 627
TD GR RPL I E+ LL+ K HI L D + Y W LVQ G+VEYID EEETT
Sbjct: 608 TDYGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYIDAEEEETT 667
Query: 628 MIAM 631
MIAM
Sbjct: 668 MIAM 671
>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
Length = 1255
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/710 (49%), Positives = 459/710 (64%), Gaps = 87/710 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDSFDEF+ ++Q +V ++ + L A ++ + P
Sbjct: 23 EDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENSVLTLDQNA--PPSDSDDPIL 80
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV------- 113
RY +KF + LS+P E DGS S M+P EARLRNLTYS+PLY+++TK V
Sbjct: 81 IRRYEIKFGTVLLSRPAMTEGDGSTSTMLPQEARLRNLTYSSPLYLEMTKKVSIARERVV 140
Query: 114 --RQGEEPVTTQH------------------------QKSFIGKIPIMLRSTYCLLNGLT 147
E+P K F+GK+PIML+S YC+L L
Sbjct: 141 FENADEDPNPDSDAQKRFGADANLDWVIEDGDDDQDPSKVFVGKLPIMLKSKYCILKDLG 200
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLE 206
+ +L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIRS +E
Sbjct: 201 EAELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAPPSATPYVAEIRSAVE 260
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
SR S++ + + A+G K GQ + A LPY+K ++PI IVFRALG V+D DIL
Sbjct: 261 KGSRLISSMQIKLFAKGEN--HKGGFGQTVKATLPYVKTDVPIGIVFRALGIVSDEDILN 318
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKE 326
HI YD +D +M+E +KP ++EAFVIQ++ VAL++IG+RG +++ +R+KYAR+I+QKE
Sbjct: 319 HICYDRNDTQMLEKLKPCIEEAFVIQDREVALDWIGSRGNSQSLSRPKRVKYARDIMQKE 378
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
+LPH+ +D ETKKA+FLGYMVHR+L +LGRRE+DDRDH+
Sbjct: 379 LLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRM 438
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
V Y QK ++ ++FNL L +K+ +T+GL+YSLATGNWGDQKKA ++AGV
Sbjct: 439 LFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 498
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL
Sbjct: 499 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 558
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
ALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP L+
Sbjct: 559 ALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVSN 618
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRH 593
++ LRR II EVS++RDIRDRE +I TDAGR+CRPL + +N G+L+L K H
Sbjct: 619 VQDLRRG-HIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYGNLVLTKEH 677
Query: 594 IDNLKE---------RD---YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I L+E RD GW LV GVVEY+D EEET MI M
Sbjct: 678 IARLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVM 727
>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
Length = 1255
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/710 (50%), Positives = 464/710 (65%), Gaps = 87/710 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDSFDEF+ ++Q +V ++ + L A ++ + P
Sbjct: 23 EDCWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENAILTLDQNA--PPSDSDDPVL 80
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--TVVRQ--- 115
RY +KF + LS+P E DGS S M+P EARLRNLTYS+PLY+++TK +V R+
Sbjct: 81 IRRYEIKFGTVLLSRPAMTEGDGSTSAMLPQEARLRNLTYSSPLYLEMTKKVSVARERVA 140
Query: 116 ----GEEP---VTTQHQ---------------------KSFIGKIPIMLRSTYCLLNGLT 147
E+P TQ + K F+GK+PIML+S YC+L L
Sbjct: 141 VENADEDPNPDSDTQKRFGADANLDWVIEDGEDDQDPSKVFVGKLPIMLKSKYCILKDLG 200
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLE 206
+ +L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIRS +E
Sbjct: 201 ETELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAPPSATPYIAEIRSAVE 260
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
SR S++ + + A+G K GQ + A LPY+K ++PI IVFR LG V+D DIL
Sbjct: 261 KGSRLISSMQIKLFAKGEN--HKGGFGQTVKATLPYVKTDVPIGIVFRGLGIVSDEDILN 318
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKE 326
HI YD +D +M+E +KP ++EAFVIQ++ VAL++IG+RG +++ +R+KYAR+I+QKE
Sbjct: 319 HICYDRNDTQMLEKLKPCIEEAFVIQDREVALDWIGSRGNSQSLSRPKRVKYARDIMQKE 378
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
+LPH+ +D ETKKA+FLGYMVHR+L +LGRRE+DDRDH+
Sbjct: 379 LLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRM 438
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
V Y QK ++ ++FNL L +K+ +T+GL+YSLATGNWGDQKKA ++AGV
Sbjct: 439 LFNKLTKDVFKYLQKCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQKKAASSKAGV 498
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL
Sbjct: 499 SQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 558
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
ALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP L+
Sbjct: 559 ALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVSN 618
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRH 593
++ LRR II EVS++RDIRDRE +I TDAGR+CRPL + +N G+L+L K H
Sbjct: 619 VQDLRRG-HIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYGNLVLTKEH 677
Query: 594 IDNLKE---------RD---YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I L+E RD GW LV GVVEY+D EEET MI M
Sbjct: 678 ITRLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVM 727
>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 1256
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/712 (49%), Positives = 463/712 (65%), Gaps = 84/712 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L EV+
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPNEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV----- 113
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ ITK ++
Sbjct: 80 IVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRER 139
Query: 114 ----RQGEE-----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGL 146
R EE P + + FIGK+PIML+S YC+L L
Sbjct: 140 LVADRNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKYCILKDL 199
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCL 205
+++ L NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIRS +
Sbjct: 200 SEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAV 259
Query: 206 EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDIL 265
E SR S L + + A+G + K G I + LPY+K +IPI++VFRALG V+D DIL
Sbjct: 260 EKGSRLLSQLSLKLFAKGDSA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDIL 317
Query: 266 EHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQ 324
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YAREI+Q
Sbjct: 318 NHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQ 377
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------- 368
KE+LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 KELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 437
Query: 369 ----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA A+A
Sbjct: 438 RVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKA 497
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 498 GVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 557
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 558 NLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLV 617
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
T+ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N GSL+L K
Sbjct: 618 NTMSSLRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNK 676
Query: 592 RHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 EHIRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 728
>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
Length = 1222
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/704 (50%), Positives = 463/704 (65%), Gaps = 65/704 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++FI ++Q ++ + + L+ AQHT+ +
Sbjct: 24 EDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNISRK 83
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ-------- 115
Y + F +IYL+KP+ E DG M P EARLRNLTY++ L+V+I K
Sbjct: 84 YEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDL 143
Query: 116 -----GEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGS 170
EE T+ K FIG++PIMLRS YCLL+ L++ DL L ECP D GGYFIINGS
Sbjct: 144 KYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIINGS 203
Query: 171 EKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G +
Sbjct: 204 EKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGST--- 260
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP ++E F
Sbjct: 261 ---SRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGF 317
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM+
Sbjct: 318 VIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 377
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+RLLL +L R++ DDRDH+ + + Q+ ++ KDF
Sbjct: 378 NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDF 437
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL+LA+K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PI
Sbjct: 438 NLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 497
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 498 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWG 557
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D I +EVSI+RDIR+
Sbjct: 558 MEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGD-ITAEVSIVRDIRE 616
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN-----------NY 605
+E++I TDAGR+ RPL + + L ++K HI L +Y NY
Sbjct: 617 KELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDINY 676
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEE 649
W L+ G+VEYID EEET +IAM Q + V + +D +E
Sbjct: 677 TWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDE 720
>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
lozoyensis 74030]
Length = 1263
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/720 (48%), Positives = 467/720 (64%), Gaps = 99/720 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQLDSFDEF+ ++Q +VE++ Q+ L Q+ + P
Sbjct: 23 EDCWAVISSFFESKGLVSQQLDSFDEFVSTTMQELVEENSQLTLD---QNNPPSSDDNPI 79
Query: 63 ---RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
RY +KF + LS+P E DG+ + M+P EARLRNLTYS+PLY+++TK V E P
Sbjct: 80 ALRRYEIKFGTVLLSRPAMTEGDGTTAVMLPQEARLRNLTYSSPLYLEMTKKVSVAVERP 139
Query: 120 VT---------TQHQKS-------------------------------FIGKIPIMLRST 139
V+ +H ++ +IGK+PIML+S
Sbjct: 140 VSLNEMDEEQLAEHHRTGEFPTRLLWEDEDSGQEITAAGDKQDKIDRVYIGKLPIMLKSK 199
Query: 140 YCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYK 198
YC+L L + +L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y
Sbjct: 200 YCILKDLDEDELYGWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKPLPSPTPYI 259
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARG-GQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALG 257
EIRS LE SR S++ + + A+G GQ + GQ I + LPY+K +IPI +VFRALG
Sbjct: 260 AEIRSALEKGSRLISSMTIKLFAKGDGQ---RGGFGQTIKSTLPYVKSDIPIAVVFRALG 316
Query: 258 FVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIK 317
V+D DIL HI YD D +M+EM+KP ++EAFVIQ++ VAL+FIG RG +T+++R++
Sbjct: 317 VVSDEDILNHICYDRSDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGNSNTLTRDKRVR 376
Query: 318 YAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------- 368
+AR+I+QKE+LPH+ + ET+KA+FLGYMVH++L +LGRRE DDRDH+
Sbjct: 377 HARDIMQKELLPHISQKEGSETRKAFFLGYMVHKMLQCALGRRECDDRDHFGKKRLDLAG 436
Query: 369 -----------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQK 411
V Y Q+ ++ ++FNL L +K+ +T+GL+YSLATGNWGDQK
Sbjct: 437 PLLAKLFRNLFKRLTGDVYKYLQRCVENNREFNLTLGVKSTTLTNGLKYSLATGNWGDQK 496
Query: 412 KAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
KA Q+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG
Sbjct: 497 KAAQSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 556
Query: 472 AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIH 531
A GLVKNLALM Y++VG+ PI+EF+ + +ME LEE P +ATK+FVNG WVG+H
Sbjct: 557 QACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVH 616
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN------- 584
RDP L+ T++ LRR +I EVS+IRDIRDRE +I TDAGR+CRPL + +N
Sbjct: 617 RDPAHLVRTVQHLRRS-HLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVDSQNK 675
Query: 585 GSLLLKKRHIDNLKE-------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G+L+L K H+ L+E + +G+Q L+ +GVVEY+D EEET MI M
Sbjct: 676 GNLVLNKDHVRRLEEDQLMPANMDLEQKAEAGYFGFQGLINAGVVEYLDAEEEETVMIVM 735
>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
Length = 1220
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/686 (51%), Positives = 457/686 (66%), Gaps = 66/686 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQ-RIVEDSPQIDLQAEAQHTSTEVETPP 62
E W VI+A+F EKGLV QQLDSF++FI ++Q IVEDS I L+ AQHT+
Sbjct: 24 EDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLI-LEQLAQHTTEADNISR 82
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ------- 115
+Y + F +IYL+KP+ E DG M P EARLRNLTY++ L+V+I K
Sbjct: 83 KYEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIRKRTYEAVDIPGRD 142
Query: 116 ------GEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
EE + K FIG++PIMLRS YCLL+ LT+ DL +L ECP D GGYFIING
Sbjct: 143 LKYEVIDEESEMSDESKIFIGRVPIMLRSKYCLLDELTESDLYKLKECPFDMGGYFIING 202
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G +
Sbjct: 203 SEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGST-- 260
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+E++KP ++E
Sbjct: 261 ----NRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLELLKPCVEEG 316
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 317 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 376
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + + Q+ ++ KD
Sbjct: 377 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKD 436
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL+LA+K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 437 FNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSSTLSHLRRTNTP 496
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 497 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEW 556
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D + SEVSI+RDIR
Sbjct: 557 GMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGD-VTSEVSIVRDIR 615
Query: 563 DREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYN-----------NY 605
++E++I TDAGR+ RPL I + L L+K HI L +Y NY
Sbjct: 616 EKELKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIRKLMMTEYQDIEGGFEEEDINY 675
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ G+VEYID EEET +IAM
Sbjct: 676 TWSSLLNEGLVEYIDAEEEETILIAM 701
>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
Length = 1256
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/712 (49%), Positives = 465/712 (65%), Gaps = 84/712 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + EV+
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ +TK ++ E
Sbjct: 80 VVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRER 139
Query: 119 PV----------TTQHQKS----------------------FIGKIPIMLRSTYCLLNGL 146
V +T+ +K+ FIGK+PIML+S YC+L L
Sbjct: 140 LVADRDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKDL 199
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCL 205
+++ L NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIRS +
Sbjct: 200 SEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAV 259
Query: 206 EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDIL 265
E SR S L + + A+G + K G I + LPY+K +IPI++VFRALG V+D DIL
Sbjct: 260 EKGSRLLSQLSLKLFAKGDSA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDIL 317
Query: 266 EHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQ 324
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YAREI+Q
Sbjct: 318 NHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQ 377
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------- 368
KE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 437
Query: 369 ----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA A+A
Sbjct: 438 RVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKA 497
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 498 GVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 557
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 558 NLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLV 617
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
T+ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N GSL+L K
Sbjct: 618 NTMLSLRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNK 676
Query: 592 RHIDNLKE------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L++ R +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 EHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 728
>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus
NRRL3357]
gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus
NRRL3357]
gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae
3.042]
Length = 1254
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/711 (49%), Positives = 462/711 (64%), Gaps = 83/711 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L EV+
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPDEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ ITK ++ E
Sbjct: 80 VVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRER 139
Query: 119 PVT-------------------------------TQHQKSFIGKIPIMLRSTYCLLNGLT 147
V + + FIGK+PIML+S YC+L L+
Sbjct: 140 SVADRDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETVFIGKVPIMLKSKYCILKDLS 199
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLE 206
++ L NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIRS +E
Sbjct: 200 EQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVE 259
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
SR S L + + A+G + K G I + LPY+K +IPI++VFRALG V+D DIL
Sbjct: 260 KGSRLLSQLSLKLFAKGDSA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILN 317
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQK 325
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YAREI+QK
Sbjct: 318 HICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQK 377
Query: 326 EMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------------- 368
E+LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 ELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFR 437
Query: 369 ---------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 419
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA A+AG
Sbjct: 438 VLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAG 497
Query: 420 VSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 479
VSQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKN
Sbjct: 498 VSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 557
Query: 480 LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMG 539
LALM Y++VG+ PI++F+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 558 LALMCYVTVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVN 617
Query: 540 TLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKR 592
T++ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N G L+L K
Sbjct: 618 TMQSLRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVLNKE 676
Query: 593 HIDNLKE------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L++ R +GW LV+SGVVEY+D EEET MI+M
Sbjct: 677 HIRKLEQDKELPPDLDPEDRRERYFGWDGLVRSGVVEYVDAEEEETIMISM 727
>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
Length = 1258
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/714 (49%), Positives = 460/714 (64%), Gaps = 86/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E++
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V
Sbjct: 80 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRER 139
Query: 115 ---------QGEE------------------PVT---TQHQKSFIGKIPIMLRSTYCLLN 144
QGEE P+ + + FIG++PIML+S YC+L
Sbjct: 140 LIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSKYCILK 199
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L ++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 200 DLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 259
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + +G S K G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 260 AIEKGSRILSQLSIKLFGKGDAS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 317
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 318 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 377
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 378 IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 437
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA +
Sbjct: 438 LFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASS 497
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 498 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 557
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 558 VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSH 617
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + EN GSL+L
Sbjct: 618 LVNTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 676
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 SKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730
>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1258
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/714 (49%), Positives = 460/714 (64%), Gaps = 86/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E++
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V
Sbjct: 80 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRER 139
Query: 115 ---------QGEE------------------PVT---TQHQKSFIGKIPIMLRSTYCLLN 144
QGEE P+ + + FIG++PIML+S YC+L
Sbjct: 140 LIAERDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSKYCILK 199
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L ++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 200 DLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 259
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + +G S K G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 260 AIEKGSRILSQLSIKLFGKGDAS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 317
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 318 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 377
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 378 IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 437
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA +
Sbjct: 438 LFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASS 497
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 498 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 557
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 558 VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSH 617
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + EN GSL+L
Sbjct: 618 LVNTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 676
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 SKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730
>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii
var. asahii CBS 8904]
Length = 1757
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/681 (51%), Positives = 456/681 (66%), Gaps = 58/681 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W VIN++FDEKGLVRQQL+SF+EF++ ++Q +V+++ ++ L QHT +
Sbjct: 33 QEDYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHTGVMGDETR 92
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE--EPV 120
RY + F QIYL+K E DG + P EARLRNLTY+APLYVD+ K+ + G+ +P+
Sbjct: 93 RYEITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLTYAAPLYVDMKKSTLSAGDVDDPI 152
Query: 121 TT---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ K +IGK+P+M+RS +CLL+GL D LNECP D GGYF
Sbjct: 153 EADWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECPYDQGGYF 212
Query: 166 IINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
IINGSEKVLIAQE+MA NTVYVF D S Y +E+ S +E + S V M R
Sbjct: 213 IINGSEKVLIAQERMAANTVYVFKKADPSPVTYLSEVTSQMEKGGKTPSKTVVKMYLR-- 270
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+ K+ G I LPY K +IPI+IVFRALG V DRD+L HI ++ +D M+EM++P
Sbjct: 271 -AQDKATTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLEMLRPC 329
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++EAF IQ+++ AL+FIG RG + T+ R + A +ILQKE LPHV VS+ E++KA+F
Sbjct: 330 IEEAFSIQDRDTALDFIGRRGQQEKGTRAVRQRAAFDILQKEFLPHVSVSEGFESRKAFF 389
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYM+HRL A+LGRRELDDRDH+ V + QK ++
Sbjct: 390 LGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHLQKCVE 449
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K+F L AIK IIT+GL+YSLATGNWGDQ KA QARAGVSQVLNR TFAS+LSHLRR
Sbjct: 450 THKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTLSHLRR 509
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG+ICPAETPEG A GLVKNLALM+YISVGS +P++EF
Sbjct: 510 TNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYSAPVMEF 569
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW +E +E + +ATK+FVNG W+GIHRD +L L ++RR + EVSI+
Sbjct: 570 LEEWGLEPQDEYG--SAPNATKVFVNGVWMGIHRDAVKLHENLLEMRRGGQ-LKHEVSIV 626
Query: 559 RDIRDREIRIHTDAGRICRPLLIAE--NGSLLLKKRHIDNLK------ERDYNNYGWQVL 610
RDIR+RE+R++TDAGR+CRPL I + +L LK+ HID L+ E + W L
Sbjct: 627 RDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLENIADGLEEAVDGSAWDEL 686
Query: 611 VQSGVVEYIDTLEEETTMIAM 631
+ GV+EY+D EEET +IAM
Sbjct: 687 LYQGVIEYVDAEEEETILIAM 707
>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
Length = 1140
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/659 (50%), Positives = 462/659 (70%), Gaps = 50/659 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+E W++I+++F++KGLVRQQLDSFD+F++ +Q ++++SP I +Q+ + +ET
Sbjct: 7 KEHSWLIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIVQSAP---TAGIETQK 63
Query: 63 RYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
R ++F QIY+SKP + E DG + PNEAR+R+LTY++PL++D+TK + E V
Sbjct: 64 RITVRFGQIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETI--SELGVV 121
Query: 122 TQHQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+H+ S + G +P+MLRS+YC+L GL+D+DL +L ECP D GGYFI+NGSEKV++AQE+
Sbjct: 122 DKHKYSRVPFGSLPVMLRSSYCVLYGLSDKDLIDLGECPYDQGGYFIVNGSEKVIVAQER 181
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA+NTVYVF + + Y + EIRS E SSR STL + + G I
Sbjct: 182 MASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGV----------IRV 231
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LP +KQ+IP+ +++RALGF++D++I++HI+Y+ DD EM E++K S++E V+Q+QNVAL
Sbjct: 232 SLPLVKQDIPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGMVVQDQNVAL 290
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG R A G +E+RI A+++L KE+LPH+G +FCETKKAYF+GY+V RLLL +LG
Sbjct: 291 DYIGKRSAPVGTPQEKRIIIAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 359 RRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTK 392
R+ DDRDHY + + QK I+ G++FN+ L +K
Sbjct: 351 RKNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNIALGLKAS 410
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G RY+LATGNWGDQ KA Q RAGV+QVLNR F S+LSHLRRVN+PI ++GKLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNL+LMAYISVGS P++EFLEE +E+LEEI+
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEIST 530
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
+ ATKIFVNG WVGIH DP L+ +L+ LRR ++ + EVSI+RDIR++EIRI +DA
Sbjct: 531 PQLNAATKIFVNGIWVGIHSDPVYLIKSLKLLRRSLE-MDKEVSIVRDIREKEIRIQSDA 589
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPLL+ +N L++ I LK + W L+ G +E++D EEE +MIAM
Sbjct: 590 GRPCRPLLVVKNNELVITPEDIKRLKRGEIK---WDNLISEGFIEFLDVEEEEMSMIAM 645
>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
kawachii IFO 4308]
Length = 1256
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/712 (49%), Positives = 463/712 (65%), Gaps = 84/712 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + EV+
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ +TK ++
Sbjct: 80 VVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRER 139
Query: 115 ---------------------------QGEEPVTTQHQKS-FIGKIPIMLRSTYCLLNGL 146
Q E P +++ FIGK+PIML+S YC+L L
Sbjct: 140 LVADRDEDDMGESNEDRKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKDL 199
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCL 205
+++ L NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIRS +
Sbjct: 200 SEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAV 259
Query: 206 EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDIL 265
E SR S L + + A+G + K G I + LPY+K +IPI++VFRALG V+D DIL
Sbjct: 260 EKGSRLLSQLSLKLFAKGDSA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDIL 317
Query: 266 EHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQ 324
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YAREI+Q
Sbjct: 318 NHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQ 377
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------- 368
KE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 437
Query: 369 ----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA A+A
Sbjct: 438 RVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKA 497
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 498 GVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 557
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 558 NLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLV 617
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
T+ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N GSL+L K
Sbjct: 618 NTMLSLRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLYVVDNDPKSENCGSLVLNK 676
Query: 592 RHIDNLKE------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L++ R +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 EHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 728
>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1222
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/704 (49%), Positives = 462/704 (65%), Gaps = 65/704 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++FI ++Q ++ + + L+ AQHT+ +
Sbjct: 24 EDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTESDNISRK 83
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ-------- 115
Y + F +IYL+KP+ E DG M P EARLRNLTY++ L+V+I K
Sbjct: 84 YEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDVPGRDL 143
Query: 116 -----GEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGS 170
EE ++ K FIG++PIMLRS YCLL+ L++ DL L ECP D GGYFIINGS
Sbjct: 144 KYEIIQEESEDSEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIINGS 203
Query: 171 EKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G +
Sbjct: 204 EKVLIAQERSAGNIVQVFKKSAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGST--- 260
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+ I A LPYIKQ++PI+I+FRALG + D +ILEHI YD +D +M+EM+KP ++E F
Sbjct: 261 ---SRTIKATLPYIKQDVPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGF 317
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM+
Sbjct: 318 VIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 377
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+RLLL +L R++ DDRDH+ + + Q+ ++ KDF
Sbjct: 378 NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDF 437
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL+LA+K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PI
Sbjct: 438 NLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 497
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 498 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWG 557
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D I +EVSI+RDIR+
Sbjct: 558 MEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGD-ITAEVSIVRDIRE 616
Query: 564 REIRIHTDAGRICRPLLIAE-------NGSLLLKKRHIDNLKERDYN-----------NY 605
+E++I TDAGR+ RPL + + L ++K HI L +Y NY
Sbjct: 617 KELKIFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHIRKLMLTEYQDIEGGFEEEDINY 676
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEE 649
W L+ G+VEYID EEET +IAM Q + V + D +E
Sbjct: 677 TWTSLLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQTADPSDE 720
>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb03]
gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
brasiliensis Pb18]
Length = 1258
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/714 (48%), Positives = 458/714 (64%), Gaps = 86/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + EV+
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V E
Sbjct: 80 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRER 139
Query: 119 PVT----------------------------------TQHQKSFIGKIPIMLRSTYCLLN 144
++ + + FIG++PIML+S YC+L
Sbjct: 140 LISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILK 199
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L ++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 200 DLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 259
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + A+G S K G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 260 AVEKGSRILSQLSIKLFAKGDTS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 317
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 318 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 377
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 378 IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 437
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA +
Sbjct: 438 LFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASS 497
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 498 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 557
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 558 VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSH 617
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + EN GSL+L
Sbjct: 618 LVSTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 676
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 SKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730
>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1258
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/714 (48%), Positives = 458/714 (64%), Gaps = 86/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + EV+
Sbjct: 20 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V E
Sbjct: 80 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRER 139
Query: 119 PVT----------------------------------TQHQKSFIGKIPIMLRSTYCLLN 144
++ + + FIG++PIML+S YC+L
Sbjct: 140 LISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILK 199
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L ++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 200 DLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 259
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + A+G S K G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 260 AVEKGSRILSQLSIKLFAKGDTS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 317
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 318 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 377
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 378 IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 437
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA +
Sbjct: 438 LFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASS 497
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 498 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 557
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 558 VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSH 617
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + EN GSL+L
Sbjct: 618 LVSTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 676
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 SKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 730
>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
[Encephalitozoon cuniculi]
Length = 1141
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/659 (50%), Positives = 461/659 (69%), Gaps = 50/659 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+E W +I+++F++KGLVRQQLDSFD+F++ +Q ++ +SP I +Q+ + +ET
Sbjct: 7 KEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAP---TAGIETQK 63
Query: 63 RYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
R ++F QIY+SKP + E DG + PNEAR+R+LTY++PL++D+TK + E V
Sbjct: 64 RIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETL--SELGVV 121
Query: 122 TQHQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+H+ S + G +P+MLRS+YC+L GL D+DL +L ECP D GGYFI+NGSEKV++AQE+
Sbjct: 122 DKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQER 181
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA+NTVYVF + + Y + EIRS E SSR STL + + G I
Sbjct: 182 MASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGV----------IRV 231
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LP +KQ++P+ +++RALGF++D++I++HI+Y+ DD EM E++K S++E V+Q+QNVAL
Sbjct: 232 SLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQNVAL 290
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG R A G +E+RI A+++L KE+LPH+G +FCETKKAYF+GY+V RLLL +LG
Sbjct: 291 DYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 359 RRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTK 392
RR DDRDHY + + QK I+ G++FN+ L +K
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALGLKAS 410
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G RY+LATGNWGDQ KA Q RAGV+QVLNR F S+LSHLRRVN+PI ++GKLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNL+LMAYISVGS P++EFLEE +E+LEEI+
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLEEIST 530
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S + ATKIFVNG WVGIH DP L+ +L+ LRR +++ EVSI+RDIR++EIR+ +DA
Sbjct: 531 SQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMD-KEVSIVRDIREKEIRVQSDA 589
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPLL+ ++ L++ I LK + W LV SG +E++D EEE +MIAM
Sbjct: 590 GRPCRPLLVVKDNKLVITAEDIRKLKRGEIK---WDNLVTSGFIEFLDVEEEEMSMIAM 645
>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1141
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/659 (50%), Positives = 461/659 (69%), Gaps = 50/659 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+E W +I+++F++KGLVRQQLDSFD+F++ +Q ++ +SP I +Q+ + +ET
Sbjct: 7 KEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAP---TAGIETQK 63
Query: 63 RYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
R ++F QIY+SKP + E DG + PNEAR+R+LTY++PL++D+TK + E V
Sbjct: 64 RIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETL--SELGVV 121
Query: 122 TQHQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+H+ S + G +P+MLRS+YC+L GL D+DL +L ECP D GGYFI+NGSEKV++AQE+
Sbjct: 122 DKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQER 181
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA+NTVYVF + + Y + EIRS E SSR STL + + G I
Sbjct: 182 MASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGV----------IRV 231
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LP +KQ++P+ +++RALGF++D++I++HI+Y+ DD EM E++K S++E V+Q+QNVAL
Sbjct: 232 SLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQNVAL 290
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG R A G +E+RI A+++L KE+LPH+G +FCETKKAYF+GY+V RLLL +LG
Sbjct: 291 DYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 359 RRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTK 392
RR DDRDHY + + QK I+ G++FN+ L +K
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALGLKAS 410
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G RY+LATGNWGDQ KA Q RAGV+QVLNR F S+LSHLRRVN+PI ++GKLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNL+LMAYISVGS P++EFLEE +E+LEEI+
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEIST 530
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S + ATKIFVNG WVGIH DP L+ +L+ LRR +++ EVSI+RDIR++EIR+ +DA
Sbjct: 531 SQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMD-KEVSIVRDIREKEIRVQSDA 589
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPLL+ ++ L++ I LK + W LV SG +E++D EEE +MIAM
Sbjct: 590 GRPCRPLLVVKDNKLVITAEDIRKLKRGEIK---WDNLVTSGFIEFLDVEEEEMSMIAM 645
>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus
Af293]
gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus
Af293]
gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus
A1163]
Length = 1255
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/715 (48%), Positives = 463/715 (64%), Gaps = 89/715 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + +E E
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTL--DQTLPPSEDED 77
Query: 61 PP----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
P RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ ITK ++
Sbjct: 78 DPVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGR 137
Query: 117 EE---------------------------------PVTTQHQKSFIGKIPIMLRSTYCLL 143
E P + + FIGK+PIML+S YC+L
Sbjct: 138 ERLIADRDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKYCIL 197
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L+++ L NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIR
Sbjct: 198 KDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIR 257
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + A+G + K G I + LPY+K +IPI++VFRALG V+D
Sbjct: 258 SAVEKGSRLLSQLSLKLFAKGDSA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDE 315
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YARE
Sbjct: 316 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYARE 375
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------- 368
I+QKE+LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 376 IMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 435
Query: 369 -------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA
Sbjct: 436 NLFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAAS 495
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 496 SKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 555
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 556 LVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPA 615
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+ T+ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N GSL+
Sbjct: 616 HLVNTMLSLRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLV 674
Query: 589 LKKRHIDNLKE------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L++ R +GW LV+SGVVEY+D EEET MI M
Sbjct: 675 LNKDHIRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 729
>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
181]
Length = 1255
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/714 (49%), Positives = 465/714 (65%), Gaps = 87/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + S + +
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLD-QTLPPSDDEDD 78
Query: 61 P---PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--- 114
P RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ ITK ++
Sbjct: 79 PVVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRE 138
Query: 115 -----------------------------QGEEPVTTQHQKS-FIGKIPIMLRSTYCLLN 144
Q E P +++ FIGK+PIML+S YC+L
Sbjct: 139 RLIADRDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILK 198
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L+++ L NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIRS
Sbjct: 199 DLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRS 258
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + A+G + K G I + LPY+K +IPI++VFRALG V+D D
Sbjct: 259 AVEKGSRLLSQLSLKLFAKGDSA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDED 316
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YAREI
Sbjct: 317 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREI 376
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------- 368
+QKE+LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 377 MQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 436
Query: 369 ------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA +
Sbjct: 437 LFRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASS 496
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 497 KAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 556
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 557 VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAH 616
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T+ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N GSL+L
Sbjct: 617 LVNTMLSLRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVL 675
Query: 590 KKRHIDNLKE------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L++ R +GW LV+SGVVEY+D EEET MI M
Sbjct: 676 NKEHIRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 729
>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 1743
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/714 (48%), Positives = 457/714 (64%), Gaps = 86/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L +++
Sbjct: 505 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDKIDP 564
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V
Sbjct: 565 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRER 624
Query: 115 ---------QGEEPVTTQ---------------------HQKSFIGKIPIMLRSTYCLLN 144
QGEE + + FIG++PIML+S YC+L
Sbjct: 625 LIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILK 684
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L ++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 685 DLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 744
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + +G S KS G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 745 AVEKGSRILSQLSIKLFGKGDTS--KSGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 802
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 803 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 862
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 863 IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 922
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA +
Sbjct: 923 LFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASS 982
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 983 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 1042
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM I+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 1043 VKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSH 1102
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + EN GSL+L
Sbjct: 1103 LVSTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 1161
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 1162 SKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 1215
>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1255
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/711 (48%), Positives = 458/711 (64%), Gaps = 83/711 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI ++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E+E
Sbjct: 20 ITSEDCWTVITSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVLDQTLPPSEDEIEP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ +TK ++
Sbjct: 80 IVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGRER 139
Query: 115 ----------QGEEPVTTQ-----------------HQKSFIGKIPIMLRSTYCLLNGLT 147
GE TQ + FIGK+PIML+S YC+L L
Sbjct: 140 MGKPNDDDDNDGETDPKTQGTYLEWETKQLPQEQMKEETVFIGKMPIMLKSKYCILKDLN 199
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLE 206
D L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIRS +E
Sbjct: 200 DASLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAVE 259
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
SR S+L + + A+G + K G I + LPY+K +IPI++VFRALG V+D DIL
Sbjct: 260 KGSRMLSSLTLKLFAKGDSA--KGGFGPTIRSTLPYVKADIPIVVVFRALGVVSDEDILN 317
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQK 325
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + +RR++YAR+I+QK
Sbjct: 318 HICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSNLNHDRRVRYARDIMQK 377
Query: 326 EMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------------- 368
E+LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 ELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLASLFR 437
Query: 369 ---------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 419
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA A+AG
Sbjct: 438 TLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAG 497
Query: 420 VSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 479
VSQVL+R TF+SSLSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKN
Sbjct: 498 VSQVLSRYTFSSSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 557
Query: 480 LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMG 539
LALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 558 LALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVT 617
Query: 540 TLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKR 592
T++ LRR+ ++I EVS+IRDIR+RE +I TD GR+CRPL + +N G L+L K
Sbjct: 618 TMQNLRRR-NMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSGGLVLNKE 676
Query: 593 HIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L +ER +GW LV+SG VEY+D EEET MI M
Sbjct: 677 HIRKLEADKDLPPDLGPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVM 727
>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL
1]
gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL
1]
Length = 1257
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/713 (48%), Positives = 464/713 (65%), Gaps = 85/713 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEF+ ++Q +VE+ Q+ L EV+
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTLDQTLPPADDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV----- 113
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ ITK ++
Sbjct: 80 VVLRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGITKRIMEGRER 139
Query: 114 ----RQGEEPV------------------------TTQHQKSFIGKIPIMLRSTYCLLNG 145
R+ +E V + + FIGK+PIML+S YC+L
Sbjct: 140 LIADREDDETVPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKD 199
Query: 146 LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSC 204
L+++ L NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIRS
Sbjct: 200 LSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSA 259
Query: 205 LEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDI 264
+E SR S L + + A+G + K G I + LPY+K +IPI++VFRALG V+D DI
Sbjct: 260 VEKGSRLLSQLSLKLFAKGDSA--KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDI 317
Query: 265 LEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREIL 323
L HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YAREI+
Sbjct: 318 LNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIM 377
Query: 324 QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------- 368
QKE+LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 QKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANL 437
Query: 369 -----------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 417
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA ++
Sbjct: 438 FRVLFTRVTRDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSK 497
Query: 418 AGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 477
AGVSQVL+R T++S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLV
Sbjct: 498 AGVSQVLSRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 557
Query: 478 KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 537
KNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP L
Sbjct: 558 KNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHL 617
Query: 538 MGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLK 590
+ T+ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N GSL+L
Sbjct: 618 VNTMLSLRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGSLVLN 676
Query: 591 KRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEE MI+M
Sbjct: 677 KEHIRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEEHIMISM 729
>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1255
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/711 (48%), Positives = 460/711 (64%), Gaps = 83/711 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E+E
Sbjct: 20 ITSEDCWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVLDQTLPPSEDEIEP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV----- 113
RY LKF + LS+P+ E DG+ + M+P EARLRNLTY++PLY+ +TK ++
Sbjct: 80 IVVRRYELKFGTVMLSRPSVTEGDGATTIMLPQEARLRNLTYASPLYLGVTKKIMEGREK 139
Query: 114 ---------RQGEEPVTTQ-----------------HQKSFIGKIPIMLRSTYCLLNGLT 147
+GE TQ + FIGK+PIML+S YC+L L
Sbjct: 140 IGKPTDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEETVFIGKMPIMLKSKYCILKDLN 199
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLE 206
+ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIRS +E
Sbjct: 200 ESSLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAVE 259
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
SR S+L + + A+G + K G I + LPY+K +IPI++VFRALG V+D DIL
Sbjct: 260 KGSRMLSSLTLKLFAKGDSA--KGGFGPTIRSTLPYVKADIPIVVVFRALGVVSDEDILN 317
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQK 325
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + +RR++YAR+I+QK
Sbjct: 318 HICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSNLNHDRRVRYARDIMQK 377
Query: 326 EMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------------- 368
E+LPH+ ++ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 ELLPHISQNEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLASLFR 437
Query: 369 ---------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 419
++ Y Q+ ++ ++ L + IK +T GL+Y+LATGNWG+QKKA A+AG
Sbjct: 438 TLFTRVTKDLQRYVQRCVETNREIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAG 497
Query: 420 VSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 479
VSQVL+R TFASSLSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKN
Sbjct: 498 VSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 557
Query: 480 LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMG 539
LALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVGIHRDP L+
Sbjct: 558 LALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVT 617
Query: 540 TLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKR 592
T++ LRR+ ++I EVS+IRDIR+RE +I TD GR+CRPL + +N G L+L K
Sbjct: 618 TMQNLRRR-NMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSGGLVLNKE 676
Query: 593 HIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L +ER +GW LV+SG VEY+D EEET MI M
Sbjct: 677 HIRKLEADKDLPTDMAPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVM 727
>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
Length = 1307
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/714 (48%), Positives = 456/714 (63%), Gaps = 86/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L E++
Sbjct: 122 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDP 181
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V
Sbjct: 182 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRER 241
Query: 115 ---------QGEEPVT---------------------TQHQKSFIGKIPIMLRSTYCLLN 144
QGEE + + FIG++PIML+S YC+L
Sbjct: 242 LIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILK 301
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L ++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 302 DLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 361
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + +G S K G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 362 AVEKGSRILSQLSIKLFGKGDTS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 419
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 420 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 479
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 480 IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 539
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA +
Sbjct: 540 LFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSSGLKYALATGNWGEQKKAASS 599
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 600 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 659
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM I+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 660 VKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSH 719
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + EN GSL+L
Sbjct: 720 LVSTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 778
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 779 SKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 832
>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
nidulans FGSC A4]
Length = 1252
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/710 (49%), Positives = 461/710 (64%), Gaps = 82/710 (11%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + EV+
Sbjct: 20 ITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSEDEVDP 79
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + LS+P E DG+ + M+P+EARLRN+TY++PLY+ I K ++
Sbjct: 80 VVVRRYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKKKIMEGRER 139
Query: 115 ----------------------QGEE----PVTTQHQKSFIGKIPIMLRSTYCLLNGLTD 148
Q EE P + + IGK+PIML+S YCLL L +
Sbjct: 140 MVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHIGKMPIMLKSKYCLLRDLGE 199
Query: 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEH 207
+ L + NECP D GGYFIINGSEKVLIAQE+ A NTV VF S Y EIRS +E
Sbjct: 200 QALYDWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEK 259
Query: 208 SSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEH 267
SR S L + + +G + K G I + LPYIK +IPI+IVFRALG V+D DIL H
Sbjct: 260 GSRLLSQLSLKLFGKGDSA--KGGFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNH 317
Query: 268 IIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQKE 326
I YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + + ERR++YAREI+QKE
Sbjct: 318 ICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKE 377
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
+LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+
Sbjct: 378 LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 437
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
++ Y Q+ ++ ++ L + +K +T GLRY+LATGNWG+QKKA A+AGV
Sbjct: 438 LFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGV 497
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL
Sbjct: 498 SQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 557
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
ALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HR P L+ T
Sbjct: 558 ALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVET 617
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRH 593
++ LRR+ ++I EVS+IRDIR+RE +I TDAGR+CRPL + +N G+L+L K H
Sbjct: 618 MQALRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEH 676
Query: 594 IDNLKE------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I L+E R +GW LV+SGVVEY+D EEET MI M
Sbjct: 677 IRKLEEDKELPPDMDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 726
>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
G186AR]
Length = 1307
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/714 (48%), Positives = 456/714 (63%), Gaps = 86/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L E++
Sbjct: 122 ITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDP 181
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---- 114
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V
Sbjct: 182 VVLRRYELKFGTVMLARPSVTEGDGATSIMLPQEARLRNLTYASPLYLGITKRVTEGRER 241
Query: 115 ---------QGEEPVT---------------------TQHQKSFIGKIPIMLRSTYCLLN 144
QGEE + + FIG++PIML+S YC+L
Sbjct: 242 LIAERDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILK 301
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L ++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 302 DLNEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 361
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + +G S K G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 362 AVEKGSRILSQLSIKLFGKGDTS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 419
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 420 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 479
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 480 IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 539
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA +
Sbjct: 540 LFRILFMRVTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASS 599
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 600 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 659
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM I+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 660 VKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSH 719
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + EN GSL+L
Sbjct: 720 LVSTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 778
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER +GW LV+SGVVEY+D EEET MI M
Sbjct: 779 SKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 832
>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
Length = 1275
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/742 (47%), Positives = 462/742 (62%), Gaps = 93/742 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F+EKGLV QQLDSF+EFI+ S+Q +V + ++ L AQH + + + R
Sbjct: 19 EDCWTVISSFFEEKGLVSQQLDSFEEFIESSIQELVLEDKKLILDQPAQHITEDDDVNRR 78
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ--GEEPVT 121
Y + F I+LSKP+ E DG+ S ++P EARLRNLTYSAPLYV++ K V ++ VT
Sbjct: 79 YEITFGDIFLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLYVEMKKMVKESIDDDDVVT 138
Query: 122 TQ---------------------------------------------------HQKSFIG 130
TQ Q FIG
Sbjct: 139 TQVVWYREGEITRYRNGEIEQDEMVIMPPNFDDDSDDIIEERHGIKVHRSGAESQTIFIG 198
Query: 131 KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM 190
K+PIML+S +C L GL++ +L E+ ECP D GGYFIINGSEKVLIAQE+ A N V VF
Sbjct: 199 KVPIMLKSKFCSLYGLSEDELYEIRECPFDMGGYFIINGSEKVLIAQERSAANIVQVFKK 258
Query: 191 KD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPI 249
S ++ E+RS LE SR S++ V + G + K +G+ I A LPYIK +IPI
Sbjct: 259 SPPSPVSHIAELRSALEKGSRLISSIQVKLARGGASNFKSGGVGRSIKATLPYIKADIPI 318
Query: 250 MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPG 309
+IVFRALG + D DIL+HI YD +D +M+EM+KP ++E F+IQ Q VAL++IG RG G
Sbjct: 319 VIVFRALGVIEDGDILQHICYDENDWQMLEMLKPCIEEGFLIQSQEVALDYIGRRGNSIG 378
Query: 310 VTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY- 368
+ KERRI+YA++ILQ+E LPH+ ET KAYFLGY+V+RLLL +L R+E DDRDH+
Sbjct: 379 IKKERRIQYAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERKEPDDRDHFG 438
Query: 369 -------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLA 403
+ Y Q+ I+RG DFN+ A+K+ IT GL+YSLA
Sbjct: 439 KKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGDDFNIVSAVKSNTITSGLKYSLA 498
Query: 404 TGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMI 463
TGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++
Sbjct: 499 TGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLV 558
Query: 464 CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFV 523
CPAETPEG A GLVKNL+LMA SVGS PI LEEW +E L + P +AT++F+
Sbjct: 559 CPAETPEGQACGLVKNLSLMACASVGSASEPITYLLEEWGLEPLSDYEPQEHKNATRVFL 618
Query: 524 NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE 583
NG WVG HRDP L+ T+R+LRR I EVS+IRDIR+RE +I TDAGRI RPL I +
Sbjct: 619 NGNWVGTHRDPAMLVETMRQLRRS-GTISPEVSLIRDIREREFKIFTDAGRIYRPLFIVD 677
Query: 584 N-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLV 636
N G L L K H + +R+ +VQ + + W L+
Sbjct: 678 NDPDSEHKGELKLTKEHCRKILDREVEE-----IVQDEEFDDEGQPLGPVQRVFGWDSLL 732
Query: 637 QSGVVEYIDTLEEETTMIAMSP 658
+G++EY+D EEET +IAMSP
Sbjct: 733 SNGIIEYLDAEEEETVLIAMSP 754
>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
Length = 1221
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/687 (50%), Positives = 455/687 (66%), Gaps = 66/687 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++FI ++Q ++ + + L+ AQHT+ +
Sbjct: 22 EDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRK 81
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP---- 119
Y + F +IYL+KP+ E DG M P EARLRNLTY++ L+V+I K + + P
Sbjct: 82 YEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDL 141
Query: 120 ----------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS YCLL+ LT+ DL L ECP D GGYFIING
Sbjct: 142 KYEIITEESEENEENNKIFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIING 201
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G +
Sbjct: 202 SEKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGST-- 259
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP ++E
Sbjct: 260 ----SRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEG 315
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 316 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 375
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + + Q+ ++ KD
Sbjct: 376 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKD 435
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL+LA+K IT GL+Y+LATGNWG+QKK+ +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 436 FNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 495
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 496 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEW 555
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D I EVSI+RDIR
Sbjct: 556 GMEPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGD-ITPEVSIVRDIR 614
Query: 563 DREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYN------------N 604
++E++I TDAGR+ RPL I + L +KK H+ L +Y N
Sbjct: 615 EKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMN 674
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W L+ G+VEYID EEET +IAM
Sbjct: 675 YTWTSLLNEGLVEYIDAEEEETILIAM 701
>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
SJ-2008]
Length = 1141
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/659 (50%), Positives = 462/659 (70%), Gaps = 50/659 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+E W +I+++F++KGLVRQQLDSFD+F++ +Q ++ ++P I +Q+ A TE++
Sbjct: 7 KEHSWSIISSFFEQKGLVRQQLDSFDQFVRTKMQEVINENPAIIVQS-APTAGTEIQK-- 63
Query: 63 RYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
R ++F QIY+SKP + E DG + PNEAR+R+LTY++PL++D+ K V E V
Sbjct: 64 RITVRFGQIYVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVIKETV--SELGVV 121
Query: 122 TQHQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+H+ S + G +P+MLRS+YC+L+GL D+DL +L ECP D GGYFI+NGSEKV++AQE+
Sbjct: 122 DKHKYSRVPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQER 181
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA+NTVYVF + + Y + EIRS E SSR STL + + G I
Sbjct: 182 MASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGA----------IRV 231
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LP +KQ+IP+ +++RALGF++D++I++HI+Y+ DD EM E++K S++E V+Q+QNVAL
Sbjct: 232 SLPLVKQDIPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGTVVQDQNVAL 290
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG R A G +E+RI AR++L KE+LPH+G +FCETKKAYF+GY+V RLLL +LG
Sbjct: 291 DYIGKRSAPVGTPQEKRITIARDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 359 RRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTK 392
RR DDRDHY + + QK I+ G++FN+ L +K
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNIALGLKAS 410
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G RY+LATGNWGDQ KA Q RAGV+QVLNR F S+LSHLRRVN+PI ++GKLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNL+LMAYISVGS P++EFLEE +E+LEEI+
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLEEIST 530
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
++ ATK+FVNG WVGIH DP L+ +L+ LRR ++ I EVSI+RDIR++EIRI +DA
Sbjct: 531 LQLSTATKVFVNGVWVGIHSDPVYLIKSLKLLRRSLE-IDKEVSIVRDIREKEIRIQSDA 589
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPL++ + L++ I+++++ W L+ G +E++D EEE +MIAM
Sbjct: 590 GRPCRPLMVVRDNKLVIT---IEDIRKLRRGEIKWDNLIGEGFIEFLDVEEEEMSMIAM 645
>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
24927]
Length = 1258
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/717 (47%), Positives = 456/717 (63%), Gaps = 94/717 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++FD KGLV QQ+DSFDEF+ ++Q ++++ Q+ L ++ E R
Sbjct: 19 EDCWTVISSFFDAKGLVSQQIDSFDEFVSTTMQELIDEDNQLVLDHNTP-SNDEGIALRR 77
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
+ +KF + LS+PT E DGS M P EARLRNLTY++PLY+ +++ V+ E+ +
Sbjct: 78 FEIKFGNVLLSRPTFTEGDGSTQVMQPQEARLRNLTYASPLYLQMSQKVMVAREKSMAEK 137
Query: 121 ------------------------------------------TTQHQKSFIGKIPIMLRS 138
T+ H + FIGKIPIML+S
Sbjct: 138 EEDEDEDMDDAEEGEKKEKQDFHWQVIGDTTEEVGDDDDDIDTSNHTRVFIGKIPIMLKS 197
Query: 139 TYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAY 197
YC+L + L LNECP D GGYF+INGSEKVLIAQE+ A N V F S +Y
Sbjct: 198 QYCVLKEFNEDGLYGLNECPYDQGGYFVINGSEKVLIAQERSAANIVQCFKKAAPSPISY 257
Query: 198 KTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALG 257
EIRS LE SR S+L + +MA+G ++ G+ I + LPYIK ++PI +VFRALG
Sbjct: 258 IAEIRSALEKGSRLISSLTIKLMAKGE---GRTGFGRTIRSTLPYIKTDVPIAVVFRALG 314
Query: 258 FVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIK 317
V+D DIL + YD +D M+EM+KP ++EAFVIQ++ VAL+FIG RG+ G+ +++RIK
Sbjct: 315 VVSDEDILNRVCYDRNDTAMLEMLKPCIEEAFVIQDREVALDFIGKRGSAQGINRDKRIK 374
Query: 318 YAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------ 371
YA+EI+QKE+LPH+ ++ ET+KA+FLGYMVH++L +L RRE DDRDH+ R
Sbjct: 375 YAKEIMQKELLPHISQAEGHETRKAFFLGYMVHKMLQCALERRETDDRDHFGRKRLDLAG 434
Query: 372 --------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQK 411
Y QK ++ G+DFN+ LAIK+ IT+GL+YSLATGNWGDQK
Sbjct: 435 PLLANLFRMLFKKLVKDVFKYLQKCVESGRDFNVTLAIKSNTITNGLKYSLATGNWGDQK 494
Query: 412 KAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
K A+AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG
Sbjct: 495 KPASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 554
Query: 472 AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIH 531
A GLVKNL+LM+YI+VGS PI F+E+ ++E LE P + TK+F+NG WVG+H
Sbjct: 555 QACGLVKNLSLMSYITVGSPTEPIQAFMEQRNLEPLETFEPGRSPNVTKVFINGSWVGVH 614
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN------- 584
RD L T+ LRR ++I EVS+IRDIRDRE +I +DAGR+ RPL + +N
Sbjct: 615 RDAASLYRTVLSLRR-TNVISHEVSVIRDIRDREFKIFSDAGRVTRPLYVIDNDPGSLRK 673
Query: 585 GSLLLKKRHIDNLKERDYNN----------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L+K HI+ L+ + YGW L+ G VEY+D EEET MI+M
Sbjct: 674 GELVLQKYHIEKLENAKFQTAEDLAPGEEKYGWNGLLNDGCVEYVDAEEEETIMISM 730
>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1266
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/716 (48%), Positives = 460/716 (64%), Gaps = 94/716 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW+VI+++F+ KGLV QQ+DSFDEF+ ++Q +VE++ Q+ L Q+ + P
Sbjct: 30 EDCWMVISSFFEAKGLVSQQVDSFDEFVSTTMQELVEENSQLTLD---QNNPPSADENPI 86
Query: 63 ---RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV------ 113
RY +KF + LS+P E DG+ M+P EARLRNLTYS+PLY+++TK V
Sbjct: 87 ALRRYEIKFGTVLLSRPAMTEGDGTTQVMLPQEARLRNLTYSSPLYLEMTKNVSVAVERN 146
Query: 114 ---------RQGEEPVTTQH-----------------------QKSFIGKIPIMLRSTYC 141
++ E T H + FIGK+PIML+S YC
Sbjct: 147 VPLNELDDEQEAEMAATGIHPTRLVWEDEDGREAGPDKIEPTPDRVFIGKLPIMLKSKYC 206
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTE 200
+L L + DL NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y E
Sbjct: 207 ILKDLDEDDLYAWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFQKSLPSPTPYVAE 266
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S + + + ++ + GQ I + LPYI+ ++PI +VFRALG V+
Sbjct: 267 IRSALEKGSRLISQMSIKLFSK--GDGGRGGFGQTIKSTLPYIRADVPIAVVFRALGVVS 324
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D DIL HI YD +D +M+EM+KP ++EAFVIQ++ VAL+FIG RG +T+++R+KYAR
Sbjct: 325 DEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGQNSTLTRDKRVKYAR 384
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
+I+QKE+LPH+ S+ ET+KA+FLGYMVH++L +LGRRE DDRDH+
Sbjct: 385 DIMQKELLPHISQSEGSETRKAFFLGYMVHKMLQCALGRRETDDRDHFGKKRLDLAGPLL 444
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
V Y + ++ K+FNL L +K +T+GL+YSLATGNWGDQKKA
Sbjct: 445 AKLFRGLFRRLTSDVYKYLKLCVENNKEFNLALGVKATTMTNGLKYSLATGNWGDQKKAA 504
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TF+S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A
Sbjct: 505 SSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 564
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNLALM Y++VG+ PI+EF+ + +ME LEE P +ATK+FVNG WVG+HRDP
Sbjct: 565 GLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVHRDP 624
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSL 587
L+ T++ LRR +I EVS+IRDIRDRE +I TDAGR+CRPL + +N G+L
Sbjct: 625 GHLVKTVQHLRRS-HLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNDVESPNKGNL 683
Query: 588 LLKKRHIDNLKE------------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+L K HI L+E +D +G+Q L+ GVVEY+D EEET MI M
Sbjct: 684 VLNKDHIRRLEEDQHLHANTDPALKDELYFGFQGLINEGVVEYVDAEEEETIMIVM 739
>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
Length = 1141
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/659 (50%), Positives = 462/659 (70%), Gaps = 50/659 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+E W +I+++F++KGLVRQQLDSFD+F++ +Q ++++SP I +Q+ + ET
Sbjct: 7 KEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIVQSAP---TAGTETQK 63
Query: 63 RYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
R ++F QIY+SKP + E DG + PNEAR R+LTY++PL++D+ K V E V
Sbjct: 64 RITVRFGQIYVSKPPIYTESDGRTITVFPNEARTRDLTYASPLFIDVIKETV--SELGVV 121
Query: 122 TQHQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+H+ S + G +P+MLRS+YC+L+GL D+DL +L ECP D GGYFI+NGSEKV++AQE+
Sbjct: 122 DKHKYSRVPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQER 181
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA+NTVYVF + + Y + EIRS E SSR STL + L +S + R+
Sbjct: 182 MASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMK--------LCRSPVAIRVS- 232
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LP +KQ++P+ +++RALGF++D++I++HI+Y+ DD EM E++K S++E V+Q+QNVAL
Sbjct: 233 -LPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDDEMFELLKESIEEGMVVQDQNVAL 290
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG R A G +E+RI A+++L KE+LPH+G +FCETKKAYF+GY+V RLLL +LG
Sbjct: 291 DYIGKRTAPVGTPQEKRIMMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 359 RRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTK 392
RR DDRDHY + + QK I+ G++FN+ L +K
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGREFNIALGLKAS 410
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G RY+LATGNWGDQ KA Q RAGV+QVLNR F S+LSHLRRVN+PI ++GKLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNL+LMAYISVGS P++EFLEE +E+LEEI+
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLEECGVESLEEISN 530
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
+ ATK+FVNG W+GIH DP L+ +L+ LRR +++ EVSI+RDIR++EIRI +DA
Sbjct: 531 FQLNTATKVFVNGVWIGIHSDPVYLVKSLKLLRRSLEMD-KEVSIVRDIREKEIRIQSDA 589
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPL++ ++ L++ + I L+ + W L+ G +E++D EEE +MIAM
Sbjct: 590 GRPCRPLMVVKDNKLVITEEDIGRLRRGEIK---WDNLIGEGFIEFLDVEEEEMSMIAM 645
>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
112818]
Length = 1258
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/715 (47%), Positives = 461/715 (64%), Gaps = 87/715 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+A+F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E +
Sbjct: 19 ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDP 78
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ I+K ++ E
Sbjct: 79 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRER 138
Query: 119 PVT-----------------------------------TQHQKSFIGKIPIMLRSTYCLL 143
++ + + FIGK+PIML+S YC+L
Sbjct: 139 LLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCIL 198
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L ++ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 199 KDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 258
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + ++++G + K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 259 SAVEKGSRILSQLSIKLLSKGDSA--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 316
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + +E+R++YAR+
Sbjct: 317 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYARD 376
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 377 IIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 436
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ G+ L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 437 NLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 496
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 497 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 556
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM I+VG+ PI++F+ + +ME LEE P ++TK+FVNG WVG+HRDP
Sbjct: 557 LVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPA 616
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+GT++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 617 HLVGTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 675
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER ++GW LV+SGV+EY+D EEET MI M
Sbjct: 676 LVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVM 730
>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
Length = 1222
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/685 (50%), Positives = 451/685 (65%), Gaps = 64/685 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 26 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEADNISRK 85
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 86 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGREL 145
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 146 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATELDLYKLKECPFDMGGYFIING 205
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 206 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR 265
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 266 T------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 319
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ + E++KA+FLGYM
Sbjct: 320 FVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYM 379
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ KD
Sbjct: 380 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAKD 439
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 440 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 499
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 500 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 559
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS++RDIR
Sbjct: 560 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMVRDIR 618
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYN----------NYG 606
++E++I TDAGR+ RPL I E+ L ++K HI L +Y +Y
Sbjct: 619 EKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIGKLMATEYQDIEGGFEDSEDYT 678
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ G+VEYID EEET +I+M
Sbjct: 679 WSSLLNEGLVEYIDAEEEETILISM 703
>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS
113480]
gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS
113480]
Length = 1258
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/715 (48%), Positives = 459/715 (64%), Gaps = 87/715 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+A+F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L E +
Sbjct: 19 ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPGDDEQDP 78
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ I+K ++ E
Sbjct: 79 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRER 138
Query: 119 PVT-----------------------------------TQHQKSFIGKIPIMLRSTYCLL 143
++ + + FIGK+PIML+S YC+L
Sbjct: 139 LLSERDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPIMLKSKYCIL 198
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L ++ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 199 KDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 258
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + A+G + K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 259 SAVEKGSRILSQLSIKLFAKGDSA--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 316
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + +E+R++YAR+
Sbjct: 317 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYARD 376
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 377 IIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 436
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ G+ L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 437 NLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 496
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 497 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 556
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM I+VG+ PI++F+ + +ME LEE P ++TK+FVNG WVG+HRDP
Sbjct: 557 LVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPA 616
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+GT++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 617 HLVGTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 675
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER ++GW LV+SGVVEY+D EEET MI M
Sbjct: 676 LVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVVEYVDAEEEETIMIVM 730
>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
118892]
Length = 1258
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/715 (47%), Positives = 460/715 (64%), Gaps = 87/715 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+A+F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E +
Sbjct: 19 ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDP 78
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ I+K ++ E
Sbjct: 79 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRER 138
Query: 119 PVT-----------------------------------TQHQKSFIGKIPIMLRSTYCLL 143
++ + + FIGK+PIML+S YC+L
Sbjct: 139 LLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCIL 198
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L ++ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 199 KDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 258
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + ++G + K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 259 SAVEKGSRILSQLSIKLFSKGDSA--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 316
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + +E+R++YAR+
Sbjct: 317 DILNHICYDRNDTSMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYARD 376
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 377 IIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 436
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ G+ L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 437 NLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 496
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 497 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 556
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM I+VG+ PI++F+ + +ME LEE P ++TK+FVNG WVG+HRDP
Sbjct: 557 LVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPA 616
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+GT++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 617 HLVGTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 675
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER ++GW LV+SGV+EY+D EEET MI M
Sbjct: 676 LVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVM 730
>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm3]
gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm1]
Length = 1137
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/685 (51%), Positives = 476/685 (69%), Gaps = 39/685 (5%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTST-EVE 59
L QE CW V++A+F EKGLVRQQLDSF+EFIQ ++Q +V+++ +I L A H+ T E E
Sbjct: 4 LSQEDCWKVVSAFFKEKGLVRQQLDSFNEFIQSTMQEVVDENSKIVLLA---HSPTGEEE 60
Query: 60 TPPRYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
+Y ++F+QIY+SKP T E DG S M PN+AR+R+LTYSA LY+DI KT EE
Sbjct: 61 QARKYTIEFKQIYVSKPPTITEPDGRTSSMFPNDARVRSLTYSASLYIDIVKTEHIGDEE 120
Query: 119 PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
+ ++K IG IPIMLRS YC+ + DRD+ + EC D GGYFI+NGSEKVLIA E
Sbjct: 121 VESRSYKKMPIGSIPIMLRSLYCVYSNTDDRDMNRIEECTYDQGGYFIVNGSEKVLIAHE 180
Query: 179 KMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+MA+N VY+F S Y Y E+RS +H R S+L + +++R S S G +
Sbjct: 181 RMASNLVYIFKKSPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVSRASDS--ASGGGYLLR 238
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A+LP+ K ++P++++FRALGFV+D++ILEHI YDF D EM+ M++PS++EAFVIQ+Q VA
Sbjct: 239 ALLPHAKLDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEAFVIQDQGVA 298
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG R A G +KE+RIK+A+++ QKE LPHVG +FCETKKAY GY +++LL+ +L
Sbjct: 299 LDYIGKRVAPAGFSKEKRIKFAKDLFQKEFLPHVGTKEFCETKKAYLFGYTINKLLMVAL 358
Query: 358 GRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKT 391
GRR +DRDHY R Y Q+ ID KD NL + ++T
Sbjct: 359 GRRSEEDRDHYGRKRLDLAGPLMTGLFRMLFKKMSNELAKYMQRCIDGNKDLNLIVGLRT 418
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
+T+GLRYSLATGNWG+Q K+ QARAGV+QVLNR + S+LSHLRRVN+PIGRDGKLAK
Sbjct: 419 STLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHLRRVNTPIGRDGKLAK 478
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
PRQLH++ WGM+CPAETPEG A GLVKN ALM+++SVG+ S ++E LEE +E LEE++
Sbjct: 479 PRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHVSVGTSSSVVVELLEECGLEGLEEVS 538
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
PSAI ATK+ VNG WVG+HR P+ LMGTL+ LRR + + SE++I+RD+R++EIRI+TD
Sbjct: 539 PSAIVGATKVLVNGSWVGVHRSPDDLMGTLKYLRRSGE-LSSEIAIVRDLREKEIRINTD 597
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPL I + G L +++ L+ + + W L+ G VE++D EEET MIA+
Sbjct: 598 GGRACRPLFIVDKGVLRIER----FLEANRHRKFTWDELMADGCVEFLDVEEEETAMIAV 653
Query: 632 WQVLVQSGVVEYIDTLEEETTMIAM 656
+++ V Y + TM+ +
Sbjct: 654 KPGDLKNTDVMYTHCEIQPATMLGV 678
>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
127.97]
Length = 1258
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/715 (47%), Positives = 460/715 (64%), Gaps = 87/715 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+A+F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E +
Sbjct: 19 ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDP 78
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ I+K ++ E
Sbjct: 79 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRER 138
Query: 119 PVT-----------------------------------TQHQKSFIGKIPIMLRSTYCLL 143
++ + + FIGK+PIML+S YC+L
Sbjct: 139 LLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCIL 198
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L ++ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 199 KDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 258
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + ++G + K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 259 SAVEKGSRILSQLSIKLFSKGDSA--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 316
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + +E+R++YAR+
Sbjct: 317 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYARD 376
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 377 IIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 436
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ G+ L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 437 NLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 496
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 497 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 556
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM I+VG+ PI++F+ + +ME LEE P ++TK+FVNG WVG+HRDP
Sbjct: 557 LVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPA 616
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+GT++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 617 HLVGTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 675
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER ++GW LV+SGV+EY+D EEET MI M
Sbjct: 676 LVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVM 730
>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
Length = 1205
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/712 (48%), Positives = 459/712 (64%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE--TP 61
E CW VI+A+F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E +
Sbjct: 22 EDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVL 81
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ I+K ++ E ++
Sbjct: 82 RRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLS 141
Query: 122 -----------------------------------TQHQKSFIGKIPIMLRSTYCLLNGL 146
+ + FIGK+PIML+S YC+L L
Sbjct: 142 ERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDL 201
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCL 205
++ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIRS +
Sbjct: 202 GEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAV 261
Query: 206 EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDIL 265
E SR S L + + ++G + K G I + LPYIK +IPI++VFRALG V+D DIL
Sbjct: 262 EKGSRILSQLSIKLFSKGDSA--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDIL 319
Query: 266 EHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREILQ 324
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + +E+R++YAR+I+Q
Sbjct: 320 NHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYARDIIQ 379
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------------- 371
KE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 380 KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 439
Query: 372 -------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
Y Q+ ++ G+ L + +K +T GL+Y+LATGNWG+QKKA ++A
Sbjct: 440 RVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKA 499
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 500 GVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 559
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM I+VG+ PI++F+ + +ME LEE P ++TK+FVNG WVG+HRDP L+
Sbjct: 560 NLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLV 619
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
GT++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+L K
Sbjct: 620 GTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVK 678
Query: 592 RHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L +ER ++GW LV+SGV+EY+D EEET MI M
Sbjct: 679 EHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVM 730
>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis
RS]
Length = 1258
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/715 (48%), Positives = 454/715 (63%), Gaps = 93/715 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L Q + + + P
Sbjct: 23 EDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLD---QTIAPDEDDPDP 79
Query: 63 ----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK + E
Sbjct: 80 VMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGRER 139
Query: 119 PVT-----------------------------------TQHQKSFIGKIPIMLRSTYCLL 143
+ + FIGK+PIML+S YC+L
Sbjct: 140 SLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCIL 199
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L + L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 200 KDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 259
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + A+G S K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 260 SAVEKGSRILSQLSIKLFAKGDSS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 317
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+
Sbjct: 318 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARD 377
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR++DDRDH+ +
Sbjct: 378 IIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 437
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ + L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 438 NLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 497
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 498 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 557
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM YI+VG+ PI++F+ + +ME LEE P ++TKIFVNG WVG+HRDP
Sbjct: 558 LVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPS 617
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+ T++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 618 HLVSTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 676
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER YGW LV+SGVVEY+D EEET MI M
Sbjct: 677 LTKEHIHKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVM 731
>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
Length = 1258
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/715 (47%), Positives = 460/715 (64%), Gaps = 87/715 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE- 59
+ E CW VI+A+F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E +
Sbjct: 19 ITSEDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEHDP 78
Query: 60 -TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ I+K ++ E
Sbjct: 79 VVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRER 138
Query: 119 PVT-----------------------------------TQHQKSFIGKIPIMLRSTYCLL 143
++ + + FIGK+PIML+S YC+L
Sbjct: 139 LLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCIL 198
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L ++ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 199 KDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 258
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + ++G + K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 259 SAVEKGSRILSQLSIKLFSKGDSA--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 316
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + +E+R++YAR+
Sbjct: 317 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYARD 376
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 377 IIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 436
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ G+ L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 437 NLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 496
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 497 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 556
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM I+VG+ PI++F+ + +ME LEE P ++TK+FVNG WVG+HRDP
Sbjct: 557 LVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPA 616
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+GT++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 617 HLVGTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 675
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER ++GW LV+SGV+EY+D EEET MI M
Sbjct: 676 LVKEHIHKLEADKELPADLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVM 730
>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
Silveira]
Length = 1205
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/715 (48%), Positives = 456/715 (63%), Gaps = 93/715 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L Q + + + P
Sbjct: 23 EDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLD---QTIAPDEDDPDP 79
Query: 63 ----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE- 117
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK + E
Sbjct: 80 VMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGRER 139
Query: 118 -----------------------------EPVTTQHQKS-----FIGKIPIMLRSTYCLL 143
EP ++ FIGK+PIML+S YC+L
Sbjct: 140 SLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCIL 199
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L + L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 200 KDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 259
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + A+G S K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 260 SAVEKGSRILSQLSIKLFAKGDSS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 317
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+
Sbjct: 318 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARD 377
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR++DDRDH+ +
Sbjct: 378 IIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 437
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ + L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 438 NLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 497
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 498 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 557
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM YI+VG+ PI++F+ + +ME LEE P ++TKIFVNG WVG+HRDP
Sbjct: 558 LVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPS 617
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+ T++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 618 HLVSTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 676
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER YGW LV+SGVVEY+D EEET MI M
Sbjct: 677 LTKEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVM 731
>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
Length = 1205
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/712 (48%), Positives = 459/712 (64%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE--TP 61
E CW VI+A+F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L + E +
Sbjct: 22 EDCWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVL 81
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ I+K ++ E ++
Sbjct: 82 RRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGISKKIMEGRERLLS 141
Query: 122 -----------------------------------TQHQKSFIGKIPIMLRSTYCLLNGL 146
+ + FIGK+PIML+S YC+L L
Sbjct: 142 ERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDL 201
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCL 205
++ L NECP D GGYF+INGSEKVLIAQE+ A N V VF S Y EIRS +
Sbjct: 202 GEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAV 261
Query: 206 EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDIL 265
E SR S L + + ++G + K G I + LPYIK +IPI++VFRALG V+D DIL
Sbjct: 262 EKGSRILSQLSIKLFSKGDSA--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDIL 319
Query: 266 EHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREILQ 324
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + +E+R++YAR+I+Q
Sbjct: 320 NHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPMSMNQEKRVRYARDIIQ 379
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------------- 371
KE LPH+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 380 KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 439
Query: 372 -------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
Y Q+ ++ G+ L + +K +T GL+Y+LATGNWG+QKKA ++A
Sbjct: 440 RVLFMRLTKDLYKYVQRCVETGRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKA 499
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 500 GVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 559
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM I+VG+ PI++F+ + +ME LEE P ++TK+FVNG WVG+HRDP L+
Sbjct: 560 NLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHRDPAHLV 619
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
GT++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+L K
Sbjct: 620 GTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLVK 678
Query: 592 RHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L +ER ++GW LV+SGV+EY+D EEET MI M
Sbjct: 679 EHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVM 730
>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 1258
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/715 (48%), Positives = 454/715 (63%), Gaps = 93/715 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L Q + + + P
Sbjct: 23 EDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLD---QTIAPDEDDPDP 79
Query: 63 ----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK + E
Sbjct: 80 VMVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKIAEGRER 139
Query: 119 PVT-----------------------------------TQHQKSFIGKIPIMLRSTYCLL 143
+ + FIGK+PIML+S YC+L
Sbjct: 140 SLAERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCIL 199
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
L + L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIR
Sbjct: 200 KDLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIR 259
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S +E SR S L + + A+G S K G I + LPYIK +IPI++VFRALG V+D
Sbjct: 260 SAVEKGSRILSQLSIKLFAKGDSS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDE 317
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYARE 321
DIL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+
Sbjct: 318 DILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARD 377
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
I+QKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR++DDRDH+ +
Sbjct: 378 IIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 437
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y Q+ ++ + L + +K +T GL+Y+LATGNWG+QKKA
Sbjct: 438 NLFRVLFMRLTKDLYKYVQRCVETNRQLYLNIGVKASTLTGGLKYALATGNWGEQKKAAS 497
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 498 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 557
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM YI+VG+ PI++F+ + +ME LEE P ++TKIFVNG WVG+HRDP
Sbjct: 558 LVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPS 617
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
L+ T++ LRR+ ++I EVS++ DIRDRE +I TDAGR+CRPL + +N GSL+
Sbjct: 618 HLVSTVQSLRRR-NMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 676
Query: 589 LKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K HI L +ER YGW LV+SGVVEY+D EEET MI M
Sbjct: 677 LTKEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVM 731
>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
Length = 1236
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/720 (49%), Positives = 465/720 (64%), Gaps = 71/720 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 32 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRK 91
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT------------ 111
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K
Sbjct: 92 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHEAIDMPGREL 151
Query: 112 ----VVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167
+ + EE K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFII
Sbjct: 152 KYSLIAEESEEDFDAG--KVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFII 209
Query: 168 NGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS 226
NGSEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S
Sbjct: 210 NGSEKVLIAQERSAGNIVQVFKKAAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSS 269
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP ++
Sbjct: 270 ------SRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVE 323
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
+ FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ + E++KA+FLG
Sbjct: 324 DGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLG 383
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YM++RLLL +L R++ DDRDH+ + Y Q+ ++
Sbjct: 384 YMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDIFRYMQRTVEEA 443
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
KDFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N
Sbjct: 444 KDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 503
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL
Sbjct: 504 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLS 563
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRD
Sbjct: 564 EWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRD 622
Query: 561 IRDREIRIHTDAGRICRPLLIAENGS------LLLKKRHIDNLKERDYN----------N 604
IR++E++I TDAGR+ RPL I ++ S L ++K HI L +Y +
Sbjct: 623 IREKELKIFTDAGRVYRPLFIVDDDSELGHKELKVRKGHIAKLLATEYQDIEGGYEDEED 682
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYID---TLEEETTMIAMSPRLK 661
Y W L+ G+VEYID EEET +I+M ++ E ID EE + ++ R+K
Sbjct: 683 YTWTSLLNEGLVEYIDAEEEETILISMAPEDLEPISPEEIDEANNSEESAGHVDVAKRIK 742
>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1223
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/685 (50%), Positives = 450/685 (65%), Gaps = 64/685 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+++F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 25 EDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRK 84
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP---- 119
Y + F +IY++KP E DG + P E+RLRNLTYS+ L+VD+ K + P
Sbjct: 85 YEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVNKRTYEAVDVPGRDL 144
Query: 120 ----------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 145 NYQLIAEESEEDNENDKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 204
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 205 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSTR 264
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 265 T------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 318
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ + E++KA+FLGYM
Sbjct: 319 FVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYM 378
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 379 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQRTVEEAND 438
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 439 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 498
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 499 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 558
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR
Sbjct: 559 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIR 617
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN----------YG 606
++E++I TDAGR+ RPL I EN L ++K HI L +Y + Y
Sbjct: 618 EKELKIFTDAGRVYRPLFIVENDEQLGHKELKVRKGHIARLMATEYQDIEGGFEDSEEYT 677
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ G+VEYID EEET +IAM
Sbjct: 678 WSSLLNEGLVEYIDAEEEETILIAM 702
>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
20631-21]
Length = 1272
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/736 (47%), Positives = 458/736 (62%), Gaps = 110/736 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
EACW VI+++F+ KGLV QQLDSFDEF+ S+Q ++ ++ Q+ L Q+ V P
Sbjct: 27 EACWTVISSFFESKGLVSQQLDSFDEFVSTSMQDLINENSQLTLD---QNNPPPVNGEPI 83
Query: 63 ---RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV------- 112
RY +KF +++++P E DG+ + + P EARLRNLTYS+ LY+ + K V
Sbjct: 84 QLRRYEIKFRTVFIAEPMMTEGDGTTARLFPQEARLRNLTYSSALYIHLDKKVSIAVERP 143
Query: 113 ----------------------------------------VRQGEEPVTTQHQKSFIGKI 132
+ E PVT + FIGK+
Sbjct: 144 TPLNELDDDEQAELAAGGDHPTKVVWEIEDQSMSQEEAAKLPANERPVTAE--PFFIGKL 201
Query: 133 PIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD 192
PIML+S YC L + D +L NECP D GGYF+INGSEKVLIAQE+ A N V VF
Sbjct: 202 PIMLKSKYCNLKDMDDDELYGWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKPP 261
Query: 193 -SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMI 251
S + EIRS LE SR S+L + + ++G ++ + GQ I + LPYIK +IPI +
Sbjct: 262 PSPTPFIAEIRSALEKGSRLISSLTIKLHSKG--DTQRGSFGQTIKSTLPYIKSDIPIAV 319
Query: 252 VFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVT 311
VFRALG V+D DIL H+ YD D +M+EM+KP ++EAFVIQ++ VAL+FIG RG GV
Sbjct: 320 VFRALGVVSDEDILNHVCYDRKDTQMLEMMKPCIEEAFVIQDREVALDFIGKRGQSLGVP 379
Query: 312 KERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM 371
+++RIK+AR+I+QKE+LPH+ + ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 380 RDKRIKHARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKK 439
Query: 372 --------------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATG 405
Y Q+ ++ K+FN L IK +T+GL+YSLATG
Sbjct: 440 RLDLAGPLLAKLFRNLFRKLTGDLYKYIQRCVENKKEFNPALGIKATTLTNGLKYSLATG 499
Query: 406 NWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 465
NWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CP
Sbjct: 500 NWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCP 559
Query: 466 AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 525
AETPEG A GLVKNLALM Y++VG+ PI+EF+ + SME LEE P +ATK+FVNG
Sbjct: 560 AETPEGQACGLVKNLALMCYVTVGTPSEPIIEFMIQRSMEVLEEYEPLRSPNATKVFVNG 619
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE-- 583
WVG+HRDP L+ T++ LRR +I EVS+IRDIRDRE +I TDAGR+CRPL + +
Sbjct: 620 VWVGVHRDPSHLVETVQDLRRS-SLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNK 678
Query: 584 -----NGSLLLKKRHIDNL---------------KERDYNNYGWQVLVQSGVVEYIDTLE 623
NG L+ HI L +ER Y YG+Q L+ GVVEY+D E
Sbjct: 679 TDSENNGKLVFNAEHIRRLEDDLALPNNMDLEEKEERGY--YGFQGLINDGVVEYLDAEE 736
Query: 624 EETTMIAMWQVLVQSG 639
EET MI M ++ G
Sbjct: 737 EETVMIVMTPQDLEDG 752
>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
Length = 1227
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/702 (49%), Positives = 459/702 (65%), Gaps = 69/702 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+++F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 29 EDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRK 88
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 89 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGREL 148
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 149 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 208
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 209 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR 268
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 269 T------VKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 322
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 323 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 382
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 383 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAND 442
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 443 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 502
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 503 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 562
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI EVS+IRDIR
Sbjct: 563 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDTLRTLRRKGDI-NPEVSMIRDIR 621
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNNYGWQVLVQSGVV 616
++E++I TDAGR+ RPL I E+ L ++K HI+ L +Y + ++ G
Sbjct: 622 EKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHINKLMATEYQD------IEGG-- 673
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ +EE T W L+ G+VEYID EEET +IAM P
Sbjct: 674 --FEDVEEYT-----WTSLLNEGLVEYIDAEEEETILIAMQP 708
>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
Length = 1222
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/712 (49%), Positives = 461/712 (64%), Gaps = 69/712 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+++F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 24 EDSWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEADNISRK 83
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 84 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVRKRTYEAVDVPGRDL 143
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 144 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 203
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R
Sbjct: 204 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGR------ 257
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+S+ + I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 258 ESSSSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 317
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 318 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 377
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 378 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQRTVEEAND 437
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 438 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 497
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 498 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 557
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR
Sbjct: 558 GMEPLEDYIPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIR 616
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN----------YG 606
++E++I TDAGR+ RPL I E+ L ++K HI+ L +Y + Y
Sbjct: 617 EKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHINKLMATEYQDIEGGFEDSEEYT 676
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
W L+ G+VEYID EEET +IAM Q +E + EE AM P
Sbjct: 677 WTSLLNEGLVEYIDAEEEETILIAM-----QPEDLEPMGEEEETQNDTAMDP 723
>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
Length = 1223
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/696 (49%), Positives = 457/696 (65%), Gaps = 64/696 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ + +
Sbjct: 26 EDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQDNISRK 85
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP---- 119
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+TK + P
Sbjct: 86 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEAVDVPGRDL 145
Query: 120 ----------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 146 NYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 205
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R
Sbjct: 206 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGR------ 259
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+S+ + I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 260 ESSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 319
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 320 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 379
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 380 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAND 439
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 440 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 499
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 500 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEW 559
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR
Sbjct: 560 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIR 618
Query: 563 DREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYN----------NYG 606
++E++I TDAGR+ RPL I E+ L ++K H+ L +Y +Y
Sbjct: 619 EQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYT 678
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVE 642
W L+ G+VEYID EEE+ +IAM ++ VE
Sbjct: 679 WSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVE 714
>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
18224]
Length = 1254
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/712 (49%), Positives = 465/712 (65%), Gaps = 86/712 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ E CW VI++YFD KGLV QQLDSFDEFI ++Q +VE+ Q+ + T E E
Sbjct: 20 ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTI--TPNEDEI 77
Query: 61 PP----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDIT------- 109
P RY +K+ I L++P+ E +G+ + ++P EAR RNLTY++PLY+++
Sbjct: 78 DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137
Query: 110 --KTVVRQGE------------------EPVTTQHQKS---FIGKIPIMLRSTYCLLNGL 146
K V R+GE +P+ +++ +IG+IPIML+S YCLL L
Sbjct: 138 ERKAVDREGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDL 197
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCL 205
+++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS +
Sbjct: 198 SEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAV 257
Query: 206 EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDIL 265
E SR S L + + A+G S K G I + LPYIK +IPI+IVFRALG V+D DIL
Sbjct: 258 EKGSRILSQLSLKLFAKGDSS--KGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDIL 315
Query: 266 EHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQ 324
HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + ++ +RR++YAREI+Q
Sbjct: 316 NHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSQTSMSHDRRVRYAREIMQ 375
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------------- 371
KE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR++DDRDH+ +
Sbjct: 376 KEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLF 435
Query: 372 -------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
Y Q+ ++ ++ L + +K +T GL+Y+LATGNWG+QKKA ++A
Sbjct: 436 RTLFTRVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSSKA 495
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVL+R TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 496 GVSQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVK 555
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALM I+VGS PI++F+ + +ME LEE P ATK+FVNG WVG+HRDP L+
Sbjct: 556 NLALMCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGVHRDPAHLV 615
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKK 591
T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + +N GSL+L K
Sbjct: 616 STVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVLNK 674
Query: 592 RHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L +ER YGW+ LV+SGV+EY+D EEET MIAM
Sbjct: 675 DHIRRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAM 726
>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1224
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/685 (49%), Positives = 450/685 (65%), Gaps = 64/685 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRK 87
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGREL 147
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 148 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIING 207
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR 267
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 268 T------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 321
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 322 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 381
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 382 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLMAQLFKTLFKKLTKDIFRYMQRTVEEAHD 441
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 442 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 501
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 502 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 561
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR
Sbjct: 562 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIR 620
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN----------YG 606
++E++I TDAGR+ RPL I E+ L ++K H+ L +Y + Y
Sbjct: 621 EKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHVGKLMATEYQDIEGGFEDAEEYT 680
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ G+VEYID EEE+ +IAM
Sbjct: 681 WSTLLNEGLVEYIDAEEEESILIAM 705
>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
Length = 1224
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/702 (49%), Positives = 458/702 (65%), Gaps = 69/702 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRK 87
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGREL 147
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 148 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIING 207
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR 267
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 268 T------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 321
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 322 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 381
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 382 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHD 441
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 442 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 501
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 502 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 561
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI EVS+IRDIR
Sbjct: 562 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI-NPEVSMIRDIR 620
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNNYGWQVLVQSGVV 616
++E++I TDAGR+ RPL I E+ L ++K HI L +Y + ++ G
Sbjct: 621 EKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD------IEGG-- 672
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ +EE T W L+ G+VEYID EEE+ +IAM P
Sbjct: 673 --FEDVEEYT-----WSSLLNEGLVEYIDAEEEESILIAMQP 707
>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; AltName: Full=B150;
AltName: Full=DNA-directed RNA polymerase II 140 kDa
polypeptide
gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1224
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/702 (49%), Positives = 458/702 (65%), Gaps = 69/702 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRK 87
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGREL 147
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 148 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIING 207
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR 267
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 268 T------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 321
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 322 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 381
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 382 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHD 441
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 442 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 501
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 502 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 561
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI EVS+IRDIR
Sbjct: 562 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI-NPEVSMIRDIR 620
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNNYGWQVLVQSGVV 616
++E++I TDAGR+ RPL I E+ L ++K HI L +Y + ++ G
Sbjct: 621 EKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD------IEGG-- 672
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ +EE T W L+ G+VEYID EEE+ +IAM P
Sbjct: 673 --FEDVEEYT-----WSSLLNEGLVEYIDAEEEESILIAMQP 707
>gi|418204392|gb|AFX61750.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
torchioi]
Length = 1137
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/706 (49%), Positives = 450/706 (63%), Gaps = 86/706 (12%)
Query: 9 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE--TPPRYLL 66
VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L EV+ RY L
Sbjct: 2 VISSFFETKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPEEDEVDPVVLRRYEL 61
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE--------- 117
KF + L +P+ E DG+ S M+P EARLRNLTYS+PLY+ ITK + E
Sbjct: 62 KFGTVMLGRPSMTEGDGATSIMLPQEARLRNLTYSSPLYLSITKRITEGRERLISERDDD 121
Query: 118 --------------------EPVT-----TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLT 152
EP T + + FIGK+PIML+S YC+L L ++ L
Sbjct: 122 DQVEDDIDDSGKGRGTYLHWEPKTLADDDPEEENVFIGKMPIMLKSKYCILKDLNEQSLY 181
Query: 153 ELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRP 211
NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS +E SR
Sbjct: 182 NWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRI 241
Query: 212 TSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYD 271
S L + + A+G S K G I + LPYI+ +IPI++VFRALG V+D DIL HI YD
Sbjct: 242 LSQLSIKLFAKGDSS--KGGFGSTIRSTLPYIRTDIPIVVVFRALGVVSDEDILNHICYD 299
Query: 272 FDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPG-VTKERRIKYAREILQKEMLPH 330
+D M+EM+KP ++E FVIQ++ VAL+FI RG P + E+R++YAREI+QKE LPH
Sbjct: 300 RNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGTSPTTMNHEKRVRYAREIIQKEFLPH 359
Query: 331 VGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------------------- 371
+ S+ ET+KA+FLGYMVHRLL +LGRR++DDRDH+ +
Sbjct: 360 ISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRTLFMR 419
Query: 372 -------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
Y Q+ ++ + L + +K ++ GL+Y+LATGNWG+QKKA ++AGVSQVL
Sbjct: 420 LTKDLYKYVQRCVETNRQLYLNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGVSQVL 479
Query: 425 NRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA 484
NR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM
Sbjct: 480 NRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMC 539
Query: 485 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKL 544
I+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HRDP L+ T++ L
Sbjct: 540 SITVGTPSEPIIDFMIQRNMEVLEEYEPQVSPNATKVFVNGVWVGVHRDPAHLVSTVQSL 599
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL 597
RR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + +N GSL L K HI L
Sbjct: 600 RRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVDNDPKSENCGSLALTKEHIHKL 658
Query: 598 ------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ER +GW LV+SGV+EY+D EEET MI M
Sbjct: 659 EADKELPPDLDPEERRERYFGWDGLVKSGVIEYVDAEEEETIMIVM 704
>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS
8797]
Length = 1220
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/702 (49%), Positives = 459/702 (65%), Gaps = 69/702 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+++F EKGLV QQLDSF++F+ ++Q I+ + ++ L+ AQHT+ +
Sbjct: 24 EDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSRLILEQLAQHTTEADNISRK 83
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P E+RLRNLTYS+ L+VD+ K + P
Sbjct: 84 YEISFGKIYVTKPMVNESDGVTHALYPQESRLRNLTYSSGLFVDVKKRTYEAIDVPGRDL 143
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 144 KYELIAEESEDDSERGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 203
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S
Sbjct: 204 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSS-- 261
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 262 ----SRTIKATLPYIKQDIPIVIIFRALGVIPDGEILEHICYDVNDWQMLEMLKPCVEDG 317
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 318 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 377
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 378 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQRTVEEAHD 437
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 438 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 497
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 498 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSSISVGTDPMPIITFLSEW 557
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI EVS+IRDIR
Sbjct: 558 GLEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI-NPEVSMIRDIR 616
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNNYGWQVLVQSGVV 616
++E++I TDAGR+ RPL I E+ L ++K HI L +Y + ++ G
Sbjct: 617 EKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHIAKLMATEYQD------IEGG-- 668
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+D +E T W L+ G+VEYID EEET +IAM P
Sbjct: 669 --LDEADEYT-----WTSLLNEGLVEYIDAEEEETILIAMQP 703
>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
[Trachipleistophora hominis]
Length = 1381
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/658 (49%), Positives = 458/658 (69%), Gaps = 42/658 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ +E CW I+++FD+ GLVRQQLDSF+EFI+ ++Q I++++ + +Q+ S E+
Sbjct: 194 ITEEDCWTAISSHFDQYGLVRQQLDSFNEFIETTMQEIIDENNTLIVQSIP---SAGKES 250
Query: 61 PPRYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
+ +LKF QIY+SKP E+DG S + P EARLR+LTY+ PLYVD+TK+VV + EE
Sbjct: 251 VQKIILKFGQIYISKPPVITEQDGKTSTLFPCEARLRDLTYACPLYVDVTKSVV-ENEES 309
Query: 120 VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+++ IG +P+MLRS+ C+L+GL+D++LTEL ECP D GGYF+INGSEKVLIAQE+
Sbjct: 310 DDHFYRQVPIGLVPVMLRSSCCILHGLSDKNLTELGECPYDQGGYFVINGSEKVLIAQER 369
Query: 180 MATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
MATN V+VF + Y + EIRS + S+ S L V + +KK+ + A
Sbjct: 370 MATNVVHVFEKSLATYTHYAEIRSAPQKGSKTPSALIVKL-------VKKTETEFLLRAT 422
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
LP ++Q+IP+++++RALGFV+D++I+EH+IYD +D EM+++++PS++EAFVIQ+QNVAL+
Sbjct: 423 LPGVRQDIPVIVIYRALGFVSDKEIMEHLIYDPNDKEMLQVIRPSIEEAFVIQDQNVALD 482
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
+IG R A G +E+RI++A++IL +E LPH+G FCET+KA+F GYM+ RLL ++ R
Sbjct: 483 YIGKRSAPAGSPREKRIQFAKDILIREFLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKR 542
Query: 360 RELDDRDHYVR--------------------------MYAQKFIDRGKDFNLELAIKTKI 393
DDRDHY + + QK I+ +DFN+ L +KT I
Sbjct: 543 VSPDDRDHYGKKRMDLAGPLLAQLFKVLFRKLCQETIKHMQKCIENKRDFNIALGLKTSI 602
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT G RYSLATGNWG+Q +A Q +AGV+QVLNR F S+LSHLRRVNSP+GR+GKLAKPR
Sbjct: 603 ITQGFRYSLATGNWGEQSRAMQTKAGVAQVLNRYNFISTLSHLRRVNSPMGREGKLAKPR 662
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLHNT WGM+CPAETPEG A GLVKNL+L+AYISV I+E LEE+ +++LEE+APS
Sbjct: 663 QLHNTHWGMVCPAETPEGQACGLVKNLSLLAYISVNHPIEGIVELLEEFGLKSLEEVAPS 722
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
+ ATK+FVNG W+GI + E L L++++RQ I +VSI++ +RD+EIRI D G
Sbjct: 723 EVYKATKVFVNGTWLGITTEREFLYTVLKRMKRQAR-IHKDVSIVQSLRDKEIRILCDVG 781
Query: 574 RICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
R CRP + EN +L H + L+E W+ LV +G+VEY+D EE+ MI M
Sbjct: 782 RPCRPCFVVENNRILFTAEHANMLRE---GKMIWEDLVNNGIVEYLDVEEEDQAMICM 836
>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
Length = 1224
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/685 (49%), Positives = 450/685 (65%), Gaps = 64/685 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRK 87
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGREL 147
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 148 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIING 207
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR 267
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 268 T------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 321
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 322 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 381
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 382 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHD 441
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 442 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 501
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 502 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 561
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR
Sbjct: 562 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIR 620
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN----------YG 606
++E++I TDAGR+ RPL I E+ L ++K HI + +Y + Y
Sbjct: 621 EKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIGKIMATEYQDIEGGFEDSEEYT 680
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ G+VEYID EEE+ +IAM
Sbjct: 681 WSSLLNEGLVEYIDAEEEESILIAM 705
>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
10500]
Length = 1256
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/714 (48%), Positives = 464/714 (64%), Gaps = 88/714 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ E CW VI++YFD KGLV QQLDSFDEFI ++Q +VE+ Q+ + T E E
Sbjct: 20 ITSEDCWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTI--TPNEDEI 77
Query: 61 PP----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--- 113
P RY +K+ I L++P+ E +G+ + ++P EAR RNLTY++PLY+++ + +
Sbjct: 78 DPVVIRRYEIKYGTIMLARPSFSEINGAATLLLPMEARHRNLTYASPLYLNVQRRLTEGR 137
Query: 114 ------RQGE--------------------EPVTTQHQKS---FIGKIPIMLRSTYCLLN 144
R GE +P+ +++ +IG+IPIML+S YCLL
Sbjct: 138 ERKVADRDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLR 197
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L+++ L NECP D GGYFIINGSEKVLIAQE+ A N V VF S Y EIRS
Sbjct: 198 DLSEQSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRS 257
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + A+G S K G I + LPYIK +IPI+IVFRALG V+D D
Sbjct: 258 AVEKGSRILSQLSLKLFAKGDSS--KGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDED 315
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA-RPGVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ + ++ +RR++YAREI
Sbjct: 316 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSQTSMSHDRRVRYAREI 375
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR++DDRDH+ +
Sbjct: 376 MQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLAT 435
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ ++ L + +K +T GL+Y+LATGNWG+QKKA +
Sbjct: 436 LFRTLFTRVTRDLTRYVQRCVETNREVVLNVGLKPATLTGGLKYALATGNWGEQKKAMSS 495
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVL+R TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 496 KAGVSQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 555
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM I+VGS PI++F+ + +ME LEE P ATK+FVNG WVGIHRDP
Sbjct: 556 VKNLALMCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGIHRDPAH 615
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLL 589
L+ T++ LRR+ ++I EVS++RDIRDRE +I TDAGR+CRPL + +N GSL+L
Sbjct: 616 LVSTVQSLRRR-NMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVL 674
Query: 590 KKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L +ER YGW+ LV+SGV+EY+D EEET MIAM
Sbjct: 675 NKDHIRRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAM 728
>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
Length = 1224
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/685 (49%), Positives = 449/685 (65%), Gaps = 64/685 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+++F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 28 EDAWAVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTETDNVSRK 87
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP---- 119
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 88 YEIGFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGREL 147
Query: 120 ----------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 148 KYELIAEESEEESESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 207
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G +
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSDAR 267
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 268 T------INATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 321
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 322 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 381
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 382 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLASLFKTLFRKLTKDIFRYMQRTVEEAHD 441
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 442 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 501
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 502 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 561
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR
Sbjct: 562 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDTLRTLRRKGD-INPEVSMIRDIR 620
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN----------YG 606
++E++I TDAGR+ RPL I E+ L ++K HI L +Y + Y
Sbjct: 621 EKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIAKLMATEYQDIEGGFEDAEEYT 680
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ G+VEYID EEET +I+M
Sbjct: 681 WTSLLNEGLVEYIDAEEEETILISM 705
>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
Length = 1194
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/658 (49%), Positives = 457/658 (69%), Gaps = 42/658 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ +E CW I+++FD+ GLVRQQLDSFDEFI+ ++Q I++++ + +Q+ S E+
Sbjct: 4 ITEEDCWTAISSHFDQYGLVRQQLDSFDEFIETTMQEIIDENNTLIVQSIP---SAGKES 60
Query: 61 PPRYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
+ +LKF QIY+SKP E+DG + + P EARLR+LTY+ PLYVD+TK+V + EE
Sbjct: 61 VQKIILKFGQIYISKPPVITEQDGKTNTLFPCEARLRDLTYACPLYVDVTKSVA-ENEES 119
Query: 120 VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+++ IG +P+MLRS+ C+L+GL+D++LTEL ECP D GGYFIINGSEKVLIAQE+
Sbjct: 120 DDHFYRQVPIGLVPVMLRSSCCILHGLSDKNLTELGECPYDQGGYFIINGSEKVLIAQER 179
Query: 180 MATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
MATN V+VF S Y + EIRS + S+ S L V + +KK+ + A
Sbjct: 180 MATNVVHVFEKSVSTYTHYAEIRSAPQKGSKTPSALIVKL-------VKKTETEFLLRAT 232
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
LP ++Q+IP+++++RALGFV+D++I+EH+IYD +D EM+++++PS++EAFVIQ+QNVAL+
Sbjct: 233 LPGVRQDIPVIVIYRALGFVSDKEIMEHLIYDPNDKEMLQVIRPSIEEAFVIQDQNVALD 292
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
+IG R A G +E+RI++A++IL +E LPH+G FCET+KA+F GYM+ RLL ++ R
Sbjct: 293 YIGKRSAPAGSPREKRIQFAKDILTREFLPHIGDKQFCETRKAFFFGYMIQRLLNCAMKR 352
Query: 360 RELDDRDHYVR--------------------------MYAQKFIDRGKDFNLELAIKTKI 393
DDRDHY + + QK I+ +DFN+ L +KT I
Sbjct: 353 VTPDDRDHYGKKRMDLAGPLLAQLFKVLFRKLCQETIKHMQKCIENKRDFNIALGLKTSI 412
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT G RYSLATGNWG+Q +A Q +AGV+QVLNR F S+LSHLRRVNSP+GR+GKLAKPR
Sbjct: 413 ITQGFRYSLATGNWGEQARAMQTKAGVAQVLNRYNFISTLSHLRRVNSPMGREGKLAKPR 472
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLHNT WGM+CPAETPEG A GLVKNL+L+AYISV ++E LEE+ +++LEE+A S
Sbjct: 473 QLHNTHWGMVCPAETPEGQACGLVKNLSLLAYISVNHPIEGVVELLEEFGLKSLEEVAAS 532
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
+ ATK+FVNG W+GI + E L L++++RQ I +VSI++ +RD+EIRI DAG
Sbjct: 533 EVNKATKVFVNGTWLGITTEREFLYTVLKRMKRQAR-IHKDVSIVQSLRDKEIRILCDAG 591
Query: 574 RICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
R CRP + EN +L H + L+E W+ LV +G+VEY+D EE+ MI M
Sbjct: 592 RPCRPCFVVENNRILFTAEHANMLRE---GKMIWEDLVNNGIVEYLDVEEEDQAMICM 646
>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
Length = 1224
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/702 (48%), Positives = 460/702 (65%), Gaps = 69/702 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+++F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 26 EDSWTVISSFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRK 85
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP---- 119
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 86 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVNKRTYEATDVPGREL 145
Query: 120 ----------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
+++ K FIG++P+MLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 146 KYNLIAEESEEDSENDKVFIGRLPVMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 205
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R
Sbjct: 206 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGR------ 259
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+S+ + I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 260 ESSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 319
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ + E++KA+FLGYM
Sbjct: 320 FVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYM 379
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 380 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQRTVEEAND 439
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 440 FNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSSTLSHLRRTNTP 499
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 500 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 559
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI EVS+IRDIR
Sbjct: 560 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI-NPEVSMIRDIR 618
Query: 563 DREIRIHTDAGRICRPLLIAENGS------LLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
++E++I TDAGR+ RPL I ++ L ++K H+ L +Y + ++ G
Sbjct: 619 EQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVARLMATEYQD------IEGG-- 670
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ +EE T W L+ G+VEYID EEE+ +IAM P
Sbjct: 671 --FEDVEEYT-----WTSLLNEGLVEYIDAEEEESILIAMQP 705
>gi|63100546|gb|AAH95078.1| Polr2b protein [Danio rerio]
Length = 366
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/346 (88%), Positives = 331/346 (95%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ GEE
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQ 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+MMARGGQ +KKSAIGQRI++ L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
IG RGA+PGVTKERRIKYA+E+LQKE+LPHVGVSDFCETKKAYFLG
Sbjct: 321 IGPRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLG 366
>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
Length = 1327
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/679 (49%), Positives = 449/679 (66%), Gaps = 58/679 (8%)
Query: 7 WIVINAYFDE------KGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
W + + YF K LV QQ+DSF++F+ S+Q IV+++ ++ L E Q T E
Sbjct: 89 WTMTDNYFSSGPKKQIKSLVSQQIDSFNDFLNNSMQEIVDENSKLVLDQELQFQGT-AEK 147
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV-------- 112
RY + F Q+YLS+PT E DGS + + P EARLRNLTYS+PLYVD++ TV
Sbjct: 148 LRRYEINFGQVYLSQPTQTEADGSVAALFPQEARLRNLTYSSPLYVDVSMTVKVPHPDGE 207
Query: 113 ---------VRQGEEPVTTQ--HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDP 161
+ + +E Q + ++GK+P+M++S +C L + + L +ECPLD
Sbjct: 208 LDENGEIEWITEEDEAGMQQISQHREYLGKVPMMIKSRFCHLLKMEEDALFNADECPLDK 267
Query: 162 GGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMM 220
GGYFIINGSEKVLIAQE+MA NTVYVF S AY EIRS +E S+ S+L V MM
Sbjct: 268 GGYFIINGSEKVLIAQERMAGNTVYVFGKAPPSPIAYLAEIRSVVESGSQTPSSLTVKMM 327
Query: 221 ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM 280
G A G I LPYI+ +IPI++VFRALG + D+DIL+HI YD +D +M E+
Sbjct: 328 RAGNPDKVGGATGSVIRVTLPYIRADIPILVVFRALGIIPDKDILQHICYDPNDTDMYEL 387
Query: 281 VKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK 340
+KPSL+EAF +Q+QNVAL+FIG RG G+T+++RI+YAR++LQKE+LPHV S K
Sbjct: 388 LKPSLEEAFPVQDQNVALDFIGRRGTAAGLTRDKRIQYARDVLQKEVLPHVSTSAGSHQK 447
Query: 341 KAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQ 374
KAYF GYM+HRLL+A++ RR+LDDRDH+ V Y Q
Sbjct: 448 KAYFFGYMIHRLLMAAMQRRDLDDRDHFGKKRLDLAGPLVASLFRTLFKKMIKDVYRYLQ 507
Query: 375 KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLS 434
K +D K+F + AI+ IT+GL+YSLATGNWG+QKKA ARAGVSQVLNR TFAS+LS
Sbjct: 508 KCVDTQKEFKMNNAIRASTITNGLKYSLATGNWGEQKKAAAARAGVSQVLNRYTFASTLS 567
Query: 435 HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP 494
HLRR N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+YI+VG+ P
Sbjct: 568 HLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYITVGTAIRP 627
Query: 495 ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE 554
I++FL++W +LEE+ + + K+FVNG W G+H +P+ LM L +LRR +
Sbjct: 628 IIDFLQDWGSVSLEEV--TDLRKGAKVFVNGFWQGVHPNPDVLMKVLLRLRR-TGTLNKS 684
Query: 555 VSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNY--GWQVLVQ 612
VSI+RDIR+REIRI D GR+CRPLLI ++ L L++ H+D L ++Y G+ +
Sbjct: 685 VSIVRDIREREIRIFADPGRVCRPLLIVQDQQLRLRRCHLDLLMRDPASDYAAGFDDMTN 744
Query: 613 SGVVEYIDTLEEETTMIAM 631
G+VE++D EEE MI M
Sbjct: 745 WGIVEFLDAEEEEMAMICM 763
>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 999
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/525 (62%), Positives = 395/525 (75%), Gaps = 34/525 (6%)
Query: 135 MLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-S 193
MLRS YC L+G TD++LTEL ECP D GGYF+INGSEKVLIAQE+M+TN VYVF K S
Sbjct: 1 MLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPS 60
Query: 194 KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVF 253
K+ ++ E RS E SR S+ + M G K A G I LPYI+ +IPI +VF
Sbjct: 61 KFMWQAECRSQPERGSRGASSCVMRQMHAVG---TKDAPGP-IRCTLPYIRTDIPIFVVF 116
Query: 254 RALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKE 313
RALGFVAD+DILEHI YD D EMMEM++PS++EAFVIQ Q VAL+FIG RG+ GV++E
Sbjct: 117 RALGFVADKDILEHICYDLADNEMMEMLRPSIEEAFVIQSQEVALDFIGKRGSAVGVSRE 176
Query: 314 RRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----- 368
+RIKYA+EILQKE+LPHVGV + CETKKAYFLGYM+HRLLL SLGRR DDRDHY
Sbjct: 177 KRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRDHYGNKRL 236
Query: 369 ---------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNW 407
VR+Y Q+ ID GK+ L+LAIK K IT GL+YSLATGNW
Sbjct: 237 DLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQLQLAIKAKTITQGLKYSLATGNW 296
Query: 408 GDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAE 467
G Q A RAGVSQVLNRL+++S+LSHLRR+NSPIGR+GKLAKPRQLHN+LWGMICPAE
Sbjct: 297 GSQG-AQDIRAGVSQVLNRLSYSSTLSHLRRINSPIGREGKLAKPRQLHNSLWGMICPAE 355
Query: 468 TPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCW 527
TPEG AVGLVKNLALMA +SVGS PILEFL+EW+MENLEEI+PS IA++TKIF+NG W
Sbjct: 356 TPEGQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVW 415
Query: 528 VGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG-S 586
VG+HRDP L+ TLRKLRRQ D+ S VS++ DIR +E+R++TD GR RPL I ++
Sbjct: 416 VGVHRDPADLVRTLRKLRRQCDVD-SSVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQK 474
Query: 587 LLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L +KK+HI+ L E+D Y W LV SG +EY+DT EEETTMI+M
Sbjct: 475 LRIKKQHIELLTEKDVTGYSWNELVTSGFIEYVDTEEEETTMISM 519
>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1245
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/704 (48%), Positives = 453/704 (64%), Gaps = 83/704 (11%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W VIN++F+EKGLVRQQL+SF+EFI+ ++Q IV+D ++ L Q+T +
Sbjct: 50 QEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETR 109
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQG-EEPV 120
RY + F QIYL++ H E DG + + P EARLRNLTYSAPLYVDI K T+ G ++PV
Sbjct: 110 RYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPV 169
Query: 121 TT---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ +K+ IGK+P+M+RS +CLL+GL D E+ ECP D GGYF
Sbjct: 170 EADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYF 229
Query: 166 IINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
II+GSEKVLIAQE+MATN V+VF +++ Y EI S E R + V M AR
Sbjct: 230 IISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYARA- 288
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
G I LPY K +IP+++VFRALG V DRD+L HI + +D ++EM++PS
Sbjct: 289 ----SGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPS 344
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E+F +Q+++ AL+FIG RG + +R + A +IL KE LPHV ++ E+KKAYF
Sbjct: 345 IEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYF 404
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMVHRL +A+LGR+ELDDRDH+ + Y +K ++
Sbjct: 405 LGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVE 464
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
+ K+F L +AI+ ITDGL+Y+LATGNWG K RAGVSQVLNR TFAS+LSHLRR
Sbjct: 465 QNKEFALNMAIRPNTITDGLKYALATGNWG---KRDNTRAGVSQVLNRYTFASTLSHLRR 521
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRD K AKPRQLHNT WGM+CPAETPEG+A GLVKNLALM+YISVGS +P++EF
Sbjct: 522 TNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEF 581
Query: 499 LEEWSMENLEEI--APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
LEEW +E+L E AP+A TK+FVNG W+GIHRD L L ++RR + EVS
Sbjct: 582 LEEWGLEDLSEYQDAPTA----TKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKY-EVS 636
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAE--NGSLLLKKRHIDNLKERDYNNYGWQVLVQSG 614
I+RDIR+RE+R++TDAGR+CRPL I + +L LK+ HID
Sbjct: 637 IVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDR------------------ 678
Query: 615 VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
ID + +E + W L+ G+VEY+D EEET +IAM+P
Sbjct: 679 ----IDQMADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTP 718
>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1245
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/704 (48%), Positives = 452/704 (64%), Gaps = 83/704 (11%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W VIN++F+EKGLVRQQL+SF+EFI+ ++Q IV+D ++ L Q+T +
Sbjct: 50 QEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETR 109
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQG-EEPV 120
RY + F QIYL++ H E DG + + P EARLRNLTYSAPLYVDI K T+ G ++PV
Sbjct: 110 RYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPV 169
Query: 121 TT---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ +K+ IGK+P+M+RS +CLL+GL D E+ ECP D GGYF
Sbjct: 170 EADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYF 229
Query: 166 IINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
II+GSEKVLIAQE+MATN V+VF +++ Y EI S E R + V M AR
Sbjct: 230 IISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYARA- 288
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
G I LPY K +IP+++VFRALG V DRD+L HI + +D ++EM++PS
Sbjct: 289 ----SGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPS 344
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E+F +Q+++ AL+FIG RG + +R + A +IL KE LPHV ++ E+KKAYF
Sbjct: 345 IEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYF 404
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMVHRL +A+LGR+ELDDRDH+ + Y +K ++
Sbjct: 405 LGYMVHRLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVE 464
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
+ K+F L +AI+ ITDGL+Y+LATGNWG K RAGVSQVLNR TF S+LSHLRR
Sbjct: 465 QNKEFALNMAIRPNTITDGLKYALATGNWG---KRDNTRAGVSQVLNRYTFTSTLSHLRR 521
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRD K AKPRQLHNT WGM+CPAETPEG+A GLVKNLALM+YISVGS +P++EF
Sbjct: 522 TNTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEF 581
Query: 499 LEEWSMENLEEI--APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
LEEW +E+L E AP+A TK+FVNG W+GIHRD L L ++RR + EVS
Sbjct: 582 LEEWGLEDLSEYQDAPTA----TKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKY-EVS 636
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAE--NGSLLLKKRHIDNLKERDYNNYGWQVLVQSG 614
I+RDIR+RE+R++TDAGR+CRPL I + +L LK+ HID
Sbjct: 637 IVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDR------------------ 678
Query: 615 VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
ID + +E + W L+ G+VEY+D EEET +IAM+P
Sbjct: 679 ----IDQMADEGLLSGAWDKLLSEGIVEYVDAAEEETILIAMTP 718
>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
Length = 1224
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/687 (49%), Positives = 449/687 (65%), Gaps = 68/687 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRK 87
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP---- 119
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTHEAVDIPGREL 147
Query: 120 ----------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
+ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 148 KYEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 207
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + AR G S
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLFAREGNS-- 265
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 266 ----SRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 321
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ + E++KA+FLGYM
Sbjct: 322 FVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYM 381
Query: 349 VHRLLLASL-----------GRRELD-----------------DRDHYVRMYAQKFIDRG 380
++RLLL +L G++ LD RD + Y Q+ ++
Sbjct: 382 INRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRD--IFRYMQRTVEEA 439
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
KDFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N
Sbjct: 440 KDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 499
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL
Sbjct: 500 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLS 559
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW ME LE+ P +AT++FVNG W G+HR+P +LM TLR LRR+ D I EVS++RD
Sbjct: 560 EWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMVRD 618
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN---------- 604
IR++E++I TDAGR+ RPL I ++ L ++K HI L +Y +
Sbjct: 619 IREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHISKLMATEYQDIEGGFEDSEE 678
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W L+ G+VEYID EEET +I+M
Sbjct: 679 YTWTSLLNDGLVEYIDAEEEETILISM 705
>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
strain 10D]
Length = 1184
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/666 (51%), Positives = 444/666 (66%), Gaps = 49/666 (7%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP---R 63
W VI+A+F EKGLV+QQLDSF+EFI + Q IV+++P I L+ + QH + PP R
Sbjct: 21 WDVISAHFREKGLVKQQLDSFNEFIGNACQTIVDETPDIVLRPQPQHVPGK-RAPPEGTR 79
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
++ F Q+ KPT E DG+P+ + P+EARLRNL+YS+PLYV++T+ + +P T +
Sbjct: 80 TIISFGQLSAGKPTFTEVDGTPTVLFPHEARLRNLSYSSPLYVEVTRIDIEI--DPATKE 137
Query: 124 HQKS-------FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
++ ++G++P+ML S +C LNGLT+ L + ECP D GGYFIINGSEK LIA
Sbjct: 138 EREFRHPARNLYLGRVPMMLHSDFCHLNGLTEYQLQNIGECPYDQGGYFIINGSEKALIA 197
Query: 177 QEKMATNTVYVFSMKDSK-YAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+M N VYVF + Y++ E RS L+ ++P T V + RGG K GQ
Sbjct: 198 QERMGNNAVYVFKRASTAPYSHVAECRSVLDRGNKPARTTQVKI-TRGG---VKGQSGQC 253
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
I+ LPYI+ +IP+ +VFRALG +DR+I+E +IYD DD EM ++ PSLD VI +QN
Sbjct: 254 IMVSLPYIRADIPLAVVFRALGLESDREIMERVIYDTDDEEMQTLLMPSLDMGSVITDQN 313
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
+AL+FIG RG G T++RRI+YARE+LQ E LPH+G+ + E KA+FLGYM H+LL
Sbjct: 314 LALDFIGKRGNSVGATRDRRIRYAREVLQLEFLPHIGIGAY-EPAKAWFLGYMTHQLLAT 372
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
LGRRE DDRDHY R Q +D GK+ N+ LA+
Sbjct: 373 VLGRREEDDRDHYGLKRLDLAGPLLTGLFRQLFQKVVKDARSILQHQLDMGKELNIALAV 432
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K + ITD L+Y++ATGNW +KA R GVSQVLNRLT+A+SLSHLRR+NSPIGR+GKL
Sbjct: 433 KGRTITDNLKYAIATGNWRADRKA-AVRTGVSQVLNRLTYAASLSHLRRLNSPIGREGKL 491
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WGMICPAETPEG + GLVKNLALMAYISVG+ + ILE L + ME L E
Sbjct: 492 AKPRQLHNTQWGMICPAETPEGQSCGLVKNLALMAYISVGTPVADILEMLYNFEMEPLYE 551
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
+ I TK+F+NG WVGIH PE+L+ LR LRR + I EVSI+ D+ E+RI
Sbjct: 552 VTAERIKRQTKVFLNGSWVGIHPRPEELVTALRVLRRSGE-IADEVSIVFDVSHGELRIG 610
Query: 570 TDAGRICRPLLI--AENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
TDAGR+CRPL I E L ++K+HID L++ + Y + LV+ G+VEY+D EEET
Sbjct: 611 TDAGRVCRPLFIVDTETNLLRIRKQHIDLLRDYETTGYTFSRLVREGLVEYLDVNEEETV 670
Query: 628 MIAMWQ 633
MIAM Q
Sbjct: 671 MIAMDQ 676
>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
IPO323]
gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
Length = 1231
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/711 (47%), Positives = 452/711 (63%), Gaps = 89/711 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FDEKGLV QQLDSFDEF ++Q+IV+D P I + E P
Sbjct: 5 EDCWTVIHSFFDEKGLVSQQLDSFDEFASTTMQQIVDDQPAIVIDQNLAGLDEESGMPIV 64
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV------- 113
R +K + +S+ E DGS M P+EARLRNLTYS+P+++ + KT
Sbjct: 65 KKRSSIKLGTLTVSQAAMTEGDGSTRAMHPHEARLRNLTYSSPMFIKLEKTTQLARERAL 124
Query: 114 ------RQG-----------------EEPVTTQH--QKSFIGKIPIMLRSTYCLLNGLTD 148
QG E+P + + FIGK+P+ML+S C L ++
Sbjct: 125 GGHYDEDQGMWVAPPNWDGTVETVWEEDPDNPKQAIDQVFIGKLPVMLKSKICALRNRSE 184
Query: 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHS 208
+L ECP D GGYFIINGSEKVLIAQE+ A N V VF K + E+RS +E
Sbjct: 185 AELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFRKKGTNTPVVAELRSAVERG 244
Query: 209 SRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
+R S++ V + Q++ GQ I LPYI+ ++PI IVFRA+G V+D DIL HI
Sbjct: 245 TRLISSMQVKLC---NQAVAAQHSGQTIKVSLPYIRADVPIAIVFRAMGVVSDEDILAHI 301
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
+ +D +M E +KP L+EAFVIQ+ +VAL+ IG RG + G TK+RRI+YAR+I+QKE L
Sbjct: 302 CPE-EDTQMREKLKPCLEEAFVIQDHDVALDHIGRRGQQQG-TKDRRIRYARDIMQKEFL 359
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PH+ + ETKKA+FLGYMV+R+L +LGR E DDRDH+
Sbjct: 360 PHISQEEGSETKKAFFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKF 419
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
+R Y + ++ GKDFN+ LA+KT IIT GLRY LATGNWGDQKKA A+AGVSQ
Sbjct: 420 QQLVKDMRQYLHRCVETGKDFNIALAVKTNIITSGLRYCLATGNWGDQKKAASAKAGVSQ 479
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+L
Sbjct: 480 VLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSL 539
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M Y++VG+ PI++F+ + M+ LEE P+ + DATK+F+NG WVG+H+ QL TLR
Sbjct: 540 MCYVTVGTPGEPIVDFMRQRGMDLLEEHDPNQVKDATKVFLNGTWVGVHKSAGQLTETLR 599
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHID 595
+LRR+ ++ EV+IIRD+R+REIR+ TDAGR+CRPL + +N G+L+LK+ H++
Sbjct: 600 QLRRK-GLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNNPKSLEPGTLMLKQDHVE 658
Query: 596 NL---------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L ++R+ +GW+ LV SGVVEY+D EEE MI M
Sbjct: 659 RLHQDQELLASLEGVSEEDREQQLFGWKGLVTSGVVEYLDAEEEEVAMIIM 709
>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/711 (47%), Positives = 454/711 (63%), Gaps = 85/711 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTR 262
Query: 211 PTSTLWV--NMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
S+ + + + GG K A G A+LPYIK E+P+ IVFRALG V+D +IL HI
Sbjct: 263 LISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+Q+E L
Sbjct: 323 VYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQREFL 381
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 382 PHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRILF 441
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQ
Sbjct: 442 LKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQ 501
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+L
Sbjct: 502 VLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSL 561
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M Y+SVGS +PI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ ++
Sbjct: 562 MCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSVVQ 621
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDN 596
+LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I N
Sbjct: 622 ELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDREISN 680
Query: 597 --LKER-DY-------------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+KE+ D+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 681 RLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp.
S-93-48]
Length = 1262
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/711 (47%), Positives = 453/711 (63%), Gaps = 85/711 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTR 262
Query: 211 PTSTLWVNMM--ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
S+ + + GG K A G A+LPYIK E+P+ IVFRALG V+D +IL HI
Sbjct: 263 LISSFNIKWAENSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+Q+E L
Sbjct: 323 VYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQREFL 381
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 382 PHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRILF 441
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQ
Sbjct: 442 LKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQ 501
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+L
Sbjct: 502 VLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSL 561
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M Y+SVGS +PI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ ++
Sbjct: 562 MCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSVVQ 621
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDN 596
+LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I N
Sbjct: 622 ELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREISN 680
Query: 597 --LKER-DY-------------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+KE+ D+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 681 RLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/711 (47%), Positives = 454/711 (63%), Gaps = 85/711 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VVEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTR 262
Query: 211 PTSTLWV--NMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
S+ + + + GG K A G A+LPYIK E+P+ IVFRALG V+D +IL HI
Sbjct: 263 LISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+Q+E L
Sbjct: 323 VYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQREFL 381
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 382 PHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRILF 441
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQ
Sbjct: 442 LKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQ 501
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+L
Sbjct: 502 VLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSL 561
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M Y+SVGS +PI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ ++
Sbjct: 562 MCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSVVQ 621
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDN 596
+LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I N
Sbjct: 622 ELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREISN 680
Query: 597 --LKER-DY-------------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+KE+ D+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 681 RLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
Length = 1262
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/712 (47%), Positives = 452/712 (63%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTR 262
Query: 211 PTSTL---WVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEH 267
S+ W + + G K A G A+LPYIKQE+P+ IVFRALG V+D +IL H
Sbjct: 263 LISSFNIKWADT-SLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEEILSH 321
Query: 268 IIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEM 327
I+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+Q+E
Sbjct: 322 IVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQREF 380
Query: 328 LPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------- 368
LPH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 381 LPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRIL 440
Query: 369 -------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 421
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVS
Sbjct: 441 FLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVS 500
Query: 422 QVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
QVLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+
Sbjct: 501 QVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLS 560
Query: 482 LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTL 541
LM Y+SVGS +PI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ +
Sbjct: 561 LMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSVV 620
Query: 542 RKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHID 595
++LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I
Sbjct: 621 QELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDREIS 679
Query: 596 N--LKER--------------DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N +KE+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 680 NRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cryptococcus neoformans]
Length = 1114
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/680 (49%), Positives = 445/680 (65%), Gaps = 64/680 (9%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W V N++F+EKGLVRQQL+SF+EFI+ ++Q IV+D ++ L Q+T +
Sbjct: 42 QEDYWTVTNSFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYTGVAGDETR 101
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQG-EEPV 120
RY + F QIYL++ H E DG + + P EARLRNLTYSAPLYVDI K T+ G ++PV
Sbjct: 102 RYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPV 161
Query: 121 TT---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ +K+ IGK+P+M+RS +CLL+GL D E+ ECP D GGYF
Sbjct: 162 EADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYF 221
Query: 166 IINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
II+GSEKVLIAQE+MATN V+VF +++ Y EI S E R + V M AR
Sbjct: 222 IISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYARA- 280
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
G I LPY K +IP+++VFRALG V DRD+L HI + +D ++EM++PS
Sbjct: 281 ----SGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPS 336
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E+F +Q+++ AL+FIG RG + +R + A +IL KE LPHV ++ E+KKAYF
Sbjct: 337 IEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYF 396
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMVHRL +A+LGRRELDDRDH+ + Y +K ++
Sbjct: 397 LGYMVHRLCMAALGRRELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVE 456
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
+ K+F L +AI+ ITDGL+Y+LATGNWG K RAGVSQVLN TF S+LSHLRR
Sbjct: 457 QNKEFALNMAIRPNTITDGLKYALATGNWG---KRDNTRAGVSQVLNSYTFTSTLSHLRR 513
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRD K AKPRQLH+T WGM+CPAETPEG+A GLVKNLALM+YISVGS +P++EF
Sbjct: 514 TNTPIGRDSKAAKPRQLHDTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEF 573
Query: 499 LEEWSMENLEEI--APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
LEEW +E+L E AP+ ATK+FVNG W+GIHRD L L ++RR + EVS
Sbjct: 574 LEEWGLEDLSEYQDAPT----ATKVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKY-EVS 628
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAE--NGSLLLKKRH---IDNLKERDYNNYGWQVLV 611
I+RDIR+RE+R++TDAGR+CRPL I + +L LK+ H ID + + + W L+
Sbjct: 629 IVRDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLL 688
Query: 612 QSGVVEYIDTLEEETTMIAM 631
G+VEY+D EEET +IAM
Sbjct: 689 SEGIVEYVDAAEEETILIAM 708
>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/713 (47%), Positives = 453/713 (63%), Gaps = 89/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L TD
Sbjct: 143 VAEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCHLRNQTDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTR 262
Query: 211 PTSTL---WV-NMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
S+ W N +A GQ K A G A+LPYIK E+P+ IVFRALG V+D +IL
Sbjct: 263 LISSFNIKWADNSLANPGQG--KRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILS 320
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKE 326
HI+YD D +M+E++KPS++E V+Q++ AL+FI RGA G T++RR+K+AR+I+Q+E
Sbjct: 321 HIVYDRTDTQMLELLKPSIEEGAVVQDRETALDFIAKRGANQG-TRDRRLKFARDIMQRE 379
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
LPH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 380 FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRI 439
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGV
Sbjct: 440 LFLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 499
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL
Sbjct: 500 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 559
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
+LM Y+SVGS +PI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+
Sbjct: 560 SLMCYVSVGSDATPIVDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSHAQQLVSV 619
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHI 594
+++LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I
Sbjct: 620 VQELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREI 678
Query: 595 DN--LKER--------------DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N +KE+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 679 SNRLVKEQLDSDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/711 (47%), Positives = 454/711 (63%), Gaps = 85/711 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTR 262
Query: 211 PTSTLWV--NMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
S+ + + + GG + A G A+LPYIK E+P+ IVFRALG V+D +IL HI
Sbjct: 263 LISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+Q+E L
Sbjct: 323 VYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQREFL 381
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 382 PHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRILF 441
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQ
Sbjct: 442 LKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQ 501
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+L
Sbjct: 502 VLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSL 561
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M Y+SVGS SPI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ ++
Sbjct: 562 MCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVTVVQ 621
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDN 596
+LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I N
Sbjct: 622 ELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQLVFDRDISN 680
Query: 597 --LKER-DY-------------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+KE+ D+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 681 RLVKEQLDHDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. tritici]
Length = 1262
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/712 (47%), Positives = 452/712 (63%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTR 262
Query: 211 PTSTL---WVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEH 267
S+ W + + GG K A G A+LPYIK E+P+ IVFRALG V+D +IL H
Sbjct: 263 LISSFNIKWADN-SLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSH 321
Query: 268 IIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEM 327
I+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+Q+E
Sbjct: 322 IVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQREF 380
Query: 328 LPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------- 368
LPH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 381 LPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRIL 440
Query: 369 -------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 421
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVS
Sbjct: 441 FLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVS 500
Query: 422 QVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
QVLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+
Sbjct: 501 QVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLS 560
Query: 482 LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTL 541
LM Y+SVGS +PI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ +
Sbjct: 561 LMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSVV 620
Query: 542 RKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHID 595
++LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I
Sbjct: 621 QELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDREIS 679
Query: 596 N--LKER--------------DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N +KE+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 680 NRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
sp. avenaria]
Length = 1262
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/711 (47%), Positives = 454/711 (63%), Gaps = 85/711 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTR 262
Query: 211 PTSTLWV--NMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
S+ + + + GG + A G A+LPYIK E+P+ IVFRALG V+D +IL HI
Sbjct: 263 LISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+Q+E L
Sbjct: 323 VYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQREFL 381
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 382 PHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRILF 441
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQ
Sbjct: 442 LKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQ 501
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+L
Sbjct: 502 VLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSL 561
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M Y+SVGS SPI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ ++
Sbjct: 562 MCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVTVVQ 621
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDN 596
+LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I N
Sbjct: 622 ELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNRNQLVFDRDISN 680
Query: 597 --LKER-DY-------------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+KE+ D+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 681 RLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 731
>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
CIRAD86]
Length = 1248
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/728 (47%), Positives = 464/728 (63%), Gaps = 92/728 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++FD KGLV QQLDSFDEF ++Q IV+++P I + + P
Sbjct: 16 EDCWSVIHSFFDSKGLVSQQLDSFDEFASTTMQEIVDETPAIVIDQNVAADDDDGLNMPI 75
Query: 63 ---RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV------ 113
RY+++ + +S+ E DGS M P+EARLRNLTYS+P+++++TK +
Sbjct: 76 VKRRYIIELGVLTISQAAMTEGDGSTRAMYPHEARLRNLTYSSPMFLNLTKRMQLARERS 135
Query: 114 ---RQGEE------------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGL 146
+ GE P T+ Q FIGK+PIML+S C L
Sbjct: 136 AGGQMGENGVWIDPPNWDGVTVDTIWEEDPDNPPETKDQ-VFIGKLPIMLKSKICALRNR 194
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLE 206
++++L ECP D GGYFIINGSEKVLIAQE+ A N V VF K + E+RS +E
Sbjct: 195 SEQELYAQQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGTPTPVVAELRSAIE 254
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
+R S++ V ++ Q+ +A G+ I +PYIK +IPI IVFRALG V+D DIL
Sbjct: 255 KGTRLISSMQVKLV---NQAAHSNATGKTIKVSVPYIKVDIPIGIVFRALGIVSDEDILN 311
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKE 326
HI+ D D +M+EM+KP L+EAFVIQ+++ AL+FIG RG + GV KERRI+YAREI+QKE
Sbjct: 312 HIV-DRKDTQMLEMLKPCLEEAFVIQDRDGALDFIGKRGNQQGV-KERRIRYAREIMQKE 369
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
LPH+ + ET+KA+FLGYMV+RLL +LGR DDRDH+
Sbjct: 370 FLPHISQEEGSETRKAFFLGYMVNRLLQCALGRTSEDDRDHFGKKRLDLAGPLMAQVFRL 429
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
++ Y + ++ G++FN+ LA+KT IIT GLRY LATGNWGDQKKA Q++AGV
Sbjct: 430 KFQQLVKEMKQYLHRCVETGREFNITLAVKTNIITSGLRYCLATGNWGDQKKASQSKAGV 489
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL
Sbjct: 490 SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 549
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
+LM Y++VG+ P+++F+ + M+ LEE P ATK+F+NG WVG+HR+ L T
Sbjct: 550 SLMCYVTVGTPGFPLIDFMRQRGMDLLEEYDPVINPGATKVFLNGTWVGVHRNAGHLADT 609
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN--------GSLLLKKR 592
LR LRR+ ++ EV+IIRD+R+REIR+ TDAGR+CRPL + +N GSL+L +
Sbjct: 610 LRSLRRK-GLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNRTEAPNNKGSLVLDQT 668
Query: 593 HIDNLKERDYNNYGWQVLVQS--GVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEE 650
H+ L E Q ++Q+ GV E EE I W+ LV GVVEY+D EEE
Sbjct: 669 HLAKLAED-------QDMLQNLEGVSE-----EEREKHIFGWKGLVDGGVVEYLDAEEEE 716
Query: 651 TTMIAMSP 658
T MI+M+P
Sbjct: 717 TAMISMTP 724
>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
C5]
Length = 1208
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/724 (46%), Positives = 450/724 (62%), Gaps = 84/724 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E + P
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPII 84
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--TVVRQGEE 118
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI V R+G +
Sbjct: 85 KRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144
Query: 119 PVTTQHQ----------------------------KSFIGKIPIMLRSTYCLLNGLTDRD 150
P + + + FIGK+P+MLRS C L +D D
Sbjct: 145 PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L LNECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264
Query: 211 PTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIY 270
S+ + K G A LPYIK ++P+ IVFRALG V+D +IL HI+Y
Sbjct: 265 LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVY 324
Query: 271 DFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPH 330
D D +M+E++KPS++E V+Q++ AL+FI RGA G TK+RR+K+AR+I+Q+E LPH
Sbjct: 325 DRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPH 383
Query: 331 VGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------------- 368
+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 384 ISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLK 443
Query: 369 ----VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
V Y Q+ ++ +DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQVL
Sbjct: 444 LTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVL 503
Query: 425 NRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA 484
NR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM
Sbjct: 504 NRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMC 563
Query: 485 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKL 544
Y+SVGS SPI++F+ + +M+ LEE + DATK+FVNG WVG+H + +QL+ +++L
Sbjct: 564 YVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQEL 623
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL 597
RR + E+S+IRDIRDRE +I TDAGR+ RPL + EN L+ K + L
Sbjct: 624 RRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEISNKL 682
Query: 598 K---ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
K + GW + EE W+ L+Q GVVEY+D EEET MI
Sbjct: 683 KAEQQETSTRQGW-------------SQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMI 729
Query: 655 AMSP 658
SP
Sbjct: 730 TFSP 733
>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
Length = 1143
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/659 (49%), Positives = 453/659 (68%), Gaps = 50/659 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+E W +I+ +F++KGLV QQ+DSFD+F++ +Q ++++SP I +Q+ S ET
Sbjct: 7 KEYSWDIISKFFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITVQST---LSAGNETRK 63
Query: 63 RYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
+ LKF QIY+SKP ++ E DG+ + PNEARLR++TY + LY+DI KT + E V
Sbjct: 64 KITLKFGQIYVSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDIVKTT--ESESGVV 121
Query: 122 TQHQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
QH+ S I G +P+M++S+YC L++ +L ++ EC D GGYFIINGSEKV+IAQE+
Sbjct: 122 DQHRYSRIPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIINGSEKVIIAQER 181
Query: 180 MATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA+NT+YVF + + Y++ EIRS E ++ S + SLK I
Sbjct: 182 MASNTIYVFKKSQPASYSHYAEIRSVPEKGAKNPSAV----------SLKLCRNPNVIRV 231
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PY KQEIP+ I++RALGF++D++I +HII DD EM +++K S+ E+ V+Q+QNVAL
Sbjct: 232 SIPYAKQEIPLFIIYRALGFLSDKEITDHIITTNDD-EMFDLLKESILESAVVQDQNVAL 290
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG R A G ++E+RI +A+++L KE+LPH+G +FCETKKAYFLGYMV +LLL +LG
Sbjct: 291 DYIGKRAAPVGSSREKRINFAKDLLAKELLPHIGTQEFCETKKAYFLGYMVQKLLLVALG 350
Query: 359 RRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTK 392
R+ DDRDHY + + QK I+ G+DFN+ L +K
Sbjct: 351 RKREDDRDHYGKKRMDLAGPLLASLFRSLYKKLCSETAKHMQKCIEGGRDFNIALGLKAS 410
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
I G RY++ATGNWGDQ A Q++AGV+QVLNR F S+LSHLRRVN+PI ++GKLAKP
Sbjct: 411 TIAQGFRYAIATGNWGDQAHAMQSKAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAKP 470
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGMICPAETPEG A GLVKNL+LMAYISVGS PI+EFLEE +E+LEEI+
Sbjct: 471 RQLHNTHWGMICPAETPEGQACGLVKNLSLMAYISVGSSSEPIVEFLEECGLESLEEISH 530
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
+ +ATK+FVNG WVGIH DPE L+ +LR LRR ++ I EVSIIRDIR++EI+I +D+
Sbjct: 531 LQLQNATKVFVNGVWVGIHEDPEYLISSLRMLRRTLE-IDKEVSIIRDIREKEIKIQSDS 589
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPL + +N L + + + + + + W +++G++E++D EEE +MIAM
Sbjct: 590 GRPCRPLFVVKNNKLCIDEAYSN---KEEIKRCTWNDFIENGLIEFLDVEEEEVSMIAM 645
>gi|418204386|gb|AFX61747.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
aggregata]
Length = 1109
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/713 (46%), Positives = 448/713 (62%), Gaps = 87/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE--TP 61
E CW VI+++F+ KGLV QQLDSFDEF +++Q +VE+ Q+ L EV+
Sbjct: 9 EDCWTVISSFFETKGLVSQQLDSFDEFATVTMQELVEEQGQVTLDQTLNPDEDEVDPVVV 68
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
RY LKF + L++P+ E DG+ S M+P EARLRNLTYS+P+Y+ I K + +G E +
Sbjct: 69 RRYELKFGTVSLARPSMTEGDGATSVMLPQEARLRNLTYSSPMYLKIRKRI-SEGREKLL 127
Query: 122 TQ---------------------------------HQKSFIGKIPIMLRSTYCLLNGLTD 148
+Q + FIGK+P+ML+S YC+L L +
Sbjct: 128 SQRDEDEEEEEDEDLRAKGTYLQWAEKPLKEDEPAEESIFIGKMPVMLKSRYCILKDLNE 187
Query: 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEH 207
+ L NECP D GGYFIINGSEKVLIAQE+ A N V +F S Y EIRS +E
Sbjct: 188 QALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAEIRSAVEK 247
Query: 208 SSRPTSTLWVNMMARGGQSLK----KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
SR S L + + ++ ++ + + G I + LPYI+ +IPIMIVFRALG V+D D
Sbjct: 248 GSRILSQLSIKLFSKTFKATSAATGRDSNGPMIKSTLPYIRDDIPIMIVFRALGVVSDED 307
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREIL 323
IL HI YD +D M+E++KP++ IQE+ VAL+FI RG + +++RI++AR+I+
Sbjct: 308 ILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGTHQSMAQDKRIRFARDIM 367
Query: 324 QKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------------ 371
QKE LPH+ S+ ET+KA+F GYM+H+LL +LGRR++DDRDH+ +
Sbjct: 368 QKEFLPHISQSEGSETRKAFFFGYMIHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGL 427
Query: 372 --------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 417
Y Q+ ++ + +L + IKT ++ GL+Y+LATGNWG+QKKA ++
Sbjct: 428 FRTLFMRLTKDLYRYVQRCVETNRQLHLNIGIKTATLSGGLKYALATGNWGEQKKAASSK 487
Query: 418 AGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 477
AGVSQVLNR T++S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLV
Sbjct: 488 AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 547
Query: 478 KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 537
KNL+LM I+VGS + I+EFL ME LEE P D TK+F+NG WVG+HRDP L
Sbjct: 548 KNLSLMCTITVGSGTAGIIEFLISQHMEVLEEFEPQVSPDVTKVFLNGVWVGVHRDPSHL 607
Query: 538 MGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLK 590
+ ++ LRRQ +++ E S++RDIRDRE +I TDAGR+CRPL + +N GSL L
Sbjct: 608 VSKVQNLRRQ-NLLPYETSLVRDIRDREFKIFTDAGRVCRPLFVVDNNPSSERCGSLALT 666
Query: 591 KRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K HI L ++R YGWQ LV SGV+EY+D EEET MI M
Sbjct: 667 KDHIRKLEADKDLPPDLDPEDRRQRYYGWQGLVNSGVIEYVDAEEEETIMIVM 719
>gi|418204394|gb|AFX61751.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
variegata]
Length = 1110
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/717 (46%), Positives = 450/717 (62%), Gaps = 89/717 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ E CW VI+++F+ KGLV QQLDS+DEFI ++Q +V++ Q+ + + T E E
Sbjct: 7 ITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTV--DQTLTPDEDEM 64
Query: 61 PP----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR-- 114
P RY LKF + +PT E DG+ + M+P EARLRNLTYS+P+Y++ TK +
Sbjct: 65 NPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRITEAR 124
Query: 115 -----------------------------QGEE----PVTTQHQKSFIGKIPIMLRSTYC 141
Q EE P + + FIGK+PIM+RS YC
Sbjct: 125 EVTMAPDAEDEDDEEDERDADLKARGTYLQWEEKKLGPKEHKMENIFIGKMPIMVRSKYC 184
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTE 200
LL L+++ L NECP D GGYF+INGSEKVLIAQE+ A N V +F S Y E
Sbjct: 185 LLRDLSEQRLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAE 244
Query: 201 IRSCLEHSSRPTSTLWVNMM-ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFV 259
IRS +E SR S L + + AR +S G I + LPY++ +IPI IVFRALG V
Sbjct: 245 IRSAIEKGSRILSQLSIKLFKARTEKSSTGGQSGAMIKSTLPYVRDDIPIFIVFRALGVV 304
Query: 260 ADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYA 319
+D DIL HI YD +D M+E++KP++ IQE+ VAL+FI RG P +T+++RI++A
Sbjct: 305 SDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKRIRFA 364
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------- 368
R+I+QKE LPH+ S+ ET+KA+F GYMVH+LL +LGRR++DDRDH+
Sbjct: 365 RDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPL 424
Query: 369 ---------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
+ Y Q +++ L +A+K ++ GL+Y+LATGNWG+QKKA
Sbjct: 425 LAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGEQKKA 484
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
++AGVSQVLNR T++S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A
Sbjct: 485 ASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 544
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNL+LM I+VG+Q + IL+FL ME LEE P D TK+F+NG WVG+HRD
Sbjct: 545 CGLVKNLSLMCTITVGTQATGILDFLIAQHMEVLEEYEPQVSPDVTKVFLNGVWVGVHRD 604
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GS 586
P L+ ++ LRRQ +++ E S++RDIRD+E +I TDAGR+CRPL + +N G+
Sbjct: 605 PSHLVSKIQSLRRQ-NLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSNCGN 663
Query: 587 LLLKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+L K HI L ++R ++GW+ LV SGV+EY+D EEET MI M
Sbjct: 664 LVLTKEHIKKLEADKDLPRNLDPEDRRARHFGWRGLVTSGVIEYVDAEEEETIMIVM 720
>gi|418204388|gb|AFX61748.1| RNA polymerase II second-largest subunit, partial [Ascosphaera cf.
larvis 64254]
Length = 1110
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/717 (46%), Positives = 450/717 (62%), Gaps = 89/717 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ E CW VI+++F+ KGLV QQLDS+DEFI ++Q +V++ Q+ + + T E E
Sbjct: 7 ITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTV--DQTLTPDEDEM 64
Query: 61 PP----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR-- 114
P RY LKF + +PT E DG+ + M+P EARLRNLTYS+P+Y++ TK +
Sbjct: 65 NPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRITEAR 124
Query: 115 -----------------------------QGEE----PVTTQHQKSFIGKIPIMLRSTYC 141
Q EE P + + FIGK+PIM+RS YC
Sbjct: 125 EVSMAPDAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVRSKYC 184
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTE 200
LL L+++ L NECP D GGYF+INGSEKVLIAQE+ A N V +F S Y E
Sbjct: 185 LLRDLSEQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAE 244
Query: 201 IRSCLEHSSRPTSTLWVNMM-ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFV 259
IRS +E SR S L + + AR ++ G I + LPY++ +IPI IVFRALG V
Sbjct: 245 IRSAIEKGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRALGVV 304
Query: 260 ADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYA 319
+D DIL HI YD +D M+E++KP++ IQE+ VAL+FI RG P +T+++RI++A
Sbjct: 305 SDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKRIRFA 364
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------- 368
R+I+QKE LPH+ S+ ET+KA+F GYMVH+LL +LGRR++DDRDH+
Sbjct: 365 RDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPL 424
Query: 369 ---------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
+ Y Q +++ L +A+K ++ GL+Y+LATGNWG+QKKA
Sbjct: 425 LAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGEQKKA 484
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
++AGVSQVLNR T++S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A
Sbjct: 485 ASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 544
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNL+LM I+VG+Q + IL+FL ME LEE P D TK+F+NG WVG+HR+
Sbjct: 545 CGLVKNLSLMCTITVGTQATGILDFLIAQHMEVLEEYEPQVSPDVTKVFLNGVWVGVHRN 604
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GS 586
P L+ ++ LRRQ +++ E S++RDIRD+E +I TDAGR+CRPL + +N G+
Sbjct: 605 PSHLVSMIQSLRRQ-NLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSNCGN 663
Query: 587 LLLKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+L K HI L +ER ++GW+ LV SGV+EY+D EEET MI M
Sbjct: 664 LVLTKEHIKKLEADKDLPRSLDPEERRARHFGWRGLVTSGVIEYVDAEEEETIMIVM 720
>gi|418204390|gb|AFX61749.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
larvis]
Length = 1110
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/717 (46%), Positives = 450/717 (62%), Gaps = 89/717 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ E CW VI+++F+ KGLV QQLDS+DEFI ++Q +V++ Q+ + + T E E
Sbjct: 7 ITSEDCWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTV--DQTLTPDEDEM 64
Query: 61 PP----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR-- 114
P RY LKF + +PT E DG+ + M+P EARLRNLTYS+P+Y++ TK +
Sbjct: 65 NPVVVRRYELKFGTCQIGRPTMTESDGTTTVMLPQEARLRNLTYSSPIYLEFTKRITEAR 124
Query: 115 -----------------------------QGEE----PVTTQHQKSFIGKIPIMLRSTYC 141
Q EE P + + FIGK+PIM+RS YC
Sbjct: 125 EVSMAPDAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVRSKYC 184
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTE 200
LL L+++ L NECP D GGYF+INGSEKVLIAQE+ A N V +F S Y E
Sbjct: 185 LLRDLSEQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAE 244
Query: 201 IRSCLEHSSRPTSTLWVNMM-ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFV 259
IRS +E SR S L + + AR ++ G I + LPY++ +IPI IVFRALG V
Sbjct: 245 IRSAIEKGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRALGVV 304
Query: 260 ADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYA 319
+D DIL HI YD +D M+E++KP++ IQE+ VAL+FI RG P +T+++RI++A
Sbjct: 305 SDEDILNHICYDPNDLPMLELLKPTIQTCLCIQEREVALDFIAKRGQHPSMTQDKRIRFA 364
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------- 368
R+I+QKE LPH+ S+ ET+KA+F GYMVH+LL +LGRR++DDRDH+
Sbjct: 365 RDIMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPL 424
Query: 369 ---------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
+ Y Q +++ L +A+K ++ GL+Y+LATGNWG+QKKA
Sbjct: 425 LAGLFRTLFMRLTKDLNRYVQICVEKNTQLQLNIAVKNGTLSGGLKYALATGNWGEQKKA 484
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
++AGVSQVLNR T++S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A
Sbjct: 485 ASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 544
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNL+LM I+VG+Q + IL+FL ME LEE P D TK+F+NG WVG+HR+
Sbjct: 545 CGLVKNLSLMCTITVGTQATGILDFLIAQHMEVLEEYEPQVSPDVTKVFLNGVWVGVHRN 604
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GS 586
P L+ ++ LRRQ +++ E S++RDIRD+E +I TDAGR+CRPL + +N G+
Sbjct: 605 PSHLVSMIQSLRRQ-NLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSNCGN 663
Query: 587 LLLKKRHIDNL------------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+L K HI L +ER ++GW+ LV SGV+EY+D EEET MI M
Sbjct: 664 LVLTKEHIKKLEADKDLPRSLDPEERRARHFGWRGLVTSGVIEYVDAEEEETIMIVM 720
>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus
ND90Pr]
Length = 1262
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/724 (46%), Positives = 450/724 (62%), Gaps = 84/724 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E + P
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPII 84
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--TVVRQGEE 118
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI V R+G +
Sbjct: 85 KRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144
Query: 119 PVTTQHQ----------------------------KSFIGKIPIMLRSTYCLLNGLTDRD 150
P + + + FIGK+P+MLRS C L +D D
Sbjct: 145 PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L LNECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264
Query: 211 PTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIY 270
S+ + K G A LPYIK ++P+ IVFRALG V+D +IL HI+Y
Sbjct: 265 LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVY 324
Query: 271 DFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPH 330
D D +M+E++KPS++E V+Q++ AL+FI RGA G T++RR+K+AR+I+Q+E LPH
Sbjct: 325 DRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TRDRRLKFARDIMQREFLPH 383
Query: 331 VGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------------- 368
+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 384 ISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLK 443
Query: 369 ----VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
V Y Q+ ++ +DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQVL
Sbjct: 444 LTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVL 503
Query: 425 NRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA 484
NR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM
Sbjct: 504 NRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMC 563
Query: 485 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKL 544
Y+SVGS SPI++F+ + +M+ LEE + DATK+FVNG WVG+H + +QL+ +++L
Sbjct: 564 YVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQEL 623
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL 597
RR + E+S+IRDIRDRE +I TDAGR+ RPL + EN L+ K + L
Sbjct: 624 RRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEISNKL 682
Query: 598 K---ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
K + GW + EE W+ L+Q GVVEY+D EEET MI
Sbjct: 683 KAEQQETSTRQGW-------------SQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMI 729
Query: 655 AMSP 658
SP
Sbjct: 730 TFSP 733
>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Mycosphaerella populorum SO2202]
Length = 1260
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/713 (46%), Positives = 456/713 (63%), Gaps = 91/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETP- 61
E CW VI+++F KGLV QQLDSFDEF ++Q IV+++P I + Q A E P
Sbjct: 27 EDCWTVIHSFFSTKGLVSQQLDSFDEFASTTMQEIVDETPAIVIDQNVASDGDDETNMPI 86
Query: 62 --PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE-- 117
RY+++ + +S+ E DGS M P+EARLRNLTYS+P+++++ K ++ E
Sbjct: 87 VKRRYIIELGMLTISQAAMTEGDGSTRQMHPHEARLRNLTYSSPMFINMRKKMMLARERS 146
Query: 118 -------------EPV-----TTQ-------------HQKSFIGKIPIMLRSTYCLLNGL 146
+PV TT+ + FIGK+PIML+S C L
Sbjct: 147 IGGHLSEDGTHWIDPVGWDGYTTETVWEDDPDNPMEAKDQVFIGKLPIMLKSKICALRNR 206
Query: 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLE 206
++++L ECP D GGYFIINGSEKVLIAQE+ A N V VF K + E+RS +E
Sbjct: 207 SEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGTNTPVVAELRSAIE 266
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
+R S++ + + QS + + G+ I +PY+K +IPI IVFRALG V+D DIL
Sbjct: 267 KGTRLISSMGIRLY---NQSAQSAVSGKTIRVTVPYLKVDIPIGIVFRALGIVSDEDILN 323
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKE 326
HI+ D D +M+EM+KP L+EAFVIQ+++VAL++IG RG + G TK++RI+YA+E++QKE
Sbjct: 324 HIV-DKSDTQMLEMLKPCLEEAFVIQDKDVALDYIGRRGQQQG-TKDKRIRYAKEVMQKE 381
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
LPH+ + ETKKA+FLGYMV+R+L +LGR + DDRDH+
Sbjct: 382 FLPHISQEEGSETKKAFFLGYMVNRMLQCALGRTDEDDRDHFGKKRLDLAGPLMAQVFRL 441
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
++ Y + ++ G++FN+ LA+KT IIT GLRY LATGNWGDQKKA ++AGV
Sbjct: 442 KFQQLVKEMKQYLHRCVETGREFNITLAVKTNIITSGLRYCLATGNWGDQKKASSSKAGV 501
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL
Sbjct: 502 SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 561
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
+LM Y++VG+ +P+++F+ + M+ LEE P ATKI +NG W+G+H +P L
Sbjct: 562 SLMCYVTVGTPGTPLIDFMRQRGMDLLEEYDPVMNPKATKIMLNGTWIGVHHNPGHLAEV 621
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRH 593
LR LRR+ D I EV+IIRD+RDREIR+ TDAGR+CRPL + +N G L+L + H
Sbjct: 622 LRTLRRK-DTISFEVTIIRDVRDREIRVFTDAGRVCRPLFVVDNDPKSSNRGHLVLNQEH 680
Query: 594 IDNLK---------------ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I L+ ER+ + YGW L + GVVEY+D EEET MI+M
Sbjct: 681 IGKLQQDQEILAGLEGVTEEERESSIYGWTGLTREGVVEYLDAEEEETAMISM 733
>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
Length = 1259
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 334/712 (46%), Positives = 456/712 (64%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++F+ KGLV QQ+DSFDEF +VQ ++++ QI L Q S +V
Sbjct: 24 EDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALR 83
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV-- 120
RY +KF + +S+P+ E DG + ++P E R RNLTY++PLYV ITK V E+P+
Sbjct: 84 RYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPL 143
Query: 121 -------------TTQH-------------------QKS-------FIGKIPIMLRSTYC 141
T +H KS FIG++PIM++S C
Sbjct: 144 NELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKIC 203
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTE 200
L+ + DL LNECP D GGYFIINGSEKVLIAQE+ A N V VF + S Y+Y E
Sbjct: 204 HLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPSPYSYTAE 263
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S++ + + ++G + K GQ I LPY+K ++PI IVFRALG V+
Sbjct: 264 IRSALEKGSRLISSMMLKLYSKGDAA--KGGYGQTIHCSLPYVKADLPIAIVFRALGVVS 321
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D DIL HI YD +D +M+EM++P ++EAF IQ++ VAL+FIG RG+ + +E+R++ A+
Sbjct: 322 DEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGSNHNIPREKRVRTAK 381
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
+ILQKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR+ DDRDH+
Sbjct: 382 DILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLL 441
Query: 369 -------VRMYAQKF-------IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Q+ ++ + F+L L +K + +++GL+YSLATGNWGDQKKA
Sbjct: 442 AKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAM 501
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 502 SSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 561
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNL+LM Y+SVG+ PI++++ + ME LEE P +ATK+F+NG WVG+H+DP
Sbjct: 562 GLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDP 621
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE--------NGS 586
L+ ++ RR+ ++I EVS++RDIRDRE +I +DAGR+ RP+ + E GS
Sbjct: 622 RILVPDVQGTRRR-NVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSANGIVPQGS 680
Query: 587 LLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+L+K ++ ++E+ N W+ L SGV+EY+D EEET MI M
Sbjct: 681 LVLQKATVNEMREQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICM 732
>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
gondii ME49]
gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
GT1]
gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
VEG]
Length = 1259
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 326/668 (48%), Positives = 449/668 (67%), Gaps = 40/668 (5%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
Q+ACW V++++F GLV QQL+SF++F+ +Q I+++ P I+++ Q+ EVE+
Sbjct: 88 QDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEVESN 147
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV----RQGE 117
Y LK +Q+ L++P+ EK+G + P EAR RNLTYS+PLYVD+ +T G
Sbjct: 148 VIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYTVDPETGA 207
Query: 118 EPVTTQ--HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
E + Q + + +G+IP+ML+S YC L + DL ++ EC D GGYFIING EKVL+
Sbjct: 208 ERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIINGGEKVLV 267
Query: 176 AQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMAR-GGQSLKKSAIG 233
AQE+MA+N VYVF K SK+ + E+RS E + TS V +R GG+ K G
Sbjct: 268 AQERMASNFVYVFQKKQPSKFGWVAEVRSQKE-GMQATSGFAVKKRSRTGGEGRKGGRPG 326
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
+I+A LPYI+ EIPI+I+FRALG ++DRDIL + YD DP+++ ++KPSL+E F
Sbjct: 327 GQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLIALMKPSLEEGFDYSS 386
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q+V L+FIG RG G +E+RI+YARE+L+KE+LPHVG CE KKA+++GYMVHRLL
Sbjct: 387 QDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGTEVGCENKKAFYIGYMVHRLL 446
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA LGR DDRDH+ VR Q+ +D GK F++
Sbjct: 447 LADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKDVRRILQRQVDHGKSFDVAG 506
Query: 388 AIKTKI-ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
AI++ IT GL+Y +ATGNWG K+ R GV+QVLNRLTFAS+LSHLRR+N+P+GR+
Sbjct: 507 AIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRLTFASALSHLRRLNTPLGRE 566
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GK+AKPRQLHNT WGMICPAETPEG AVGLVKNLALM+ ISVGS + + EFL EW ++
Sbjct: 567 GKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDISVGSATNTVHEFLVEWGLDP 626
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
LEE+ P I + K+FVNG WVG + + L TLR+LRR+ D I SE SI+RD+ +RE+
Sbjct: 627 LEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQTLRQLRRRCD-ISSETSIVRDLVNREV 685
Query: 567 RIHTDAGRICRPLLIAENGS--LLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEE 624
+I TDAGR RPL + + G+ L++K+ H++ L+ R + W L++ G++E++D EE
Sbjct: 686 KIFTDAGRAMRPLFVVDEGTRDLVMKRCHLEELQRRGKDEKSWGYLMEKGIIEFVDCEEE 745
Query: 625 ETTMIAMW 632
ET MIAM+
Sbjct: 746 ETCMIAMF 753
>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii
var. asahii CBS 2479]
Length = 1732
Score = 639 bits (1647), Expect = e-180, Method: Compositional matrix adjust.
Identities = 339/681 (49%), Positives = 438/681 (64%), Gaps = 83/681 (12%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W VIN++FDEKGLVRQQL+SF+EF++ ++Q +V+++ ++ L QHT +
Sbjct: 33 QEDYWKVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHTGVMGDETR 92
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE--EPV 120
RY + F QIYL+K E DG + P EARLRNLTY+APLYVD+ K+ + G+ +P+
Sbjct: 93 RYEITFGQIYLAKVAMTEMDGQTVGLFPQEARLRNLTYAAPLYVDMKKSTLSAGDVDDPI 152
Query: 121 TT---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ K +IGK+P+M+RS +CLL+GL D LNECP D GGYF
Sbjct: 153 EADWKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECPYDQGGYF 212
Query: 166 IINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
IINGSEKVLIAQE+MA NTVYVF D S Y +E+ S +E + S V M R
Sbjct: 213 IINGSEKVLIAQERMAANTVYVFKKADPSPVIYLSEVTSQMEKGGKTPSKTVVKMYLR-- 270
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+ K+ G I LPY K +IPI+IVFRALG V DRD+L HI ++ +D M+EM++P
Sbjct: 271 -AQDKATTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLEMLRPC 329
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++EAF IQ+++ AL+FIG RG + T+ R KA+F
Sbjct: 330 IEEAFSIQDRDTALDFIGRRGQQEKGTRASR-------------------------KAFF 364
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYM+HRL A+LGRRELDDRDH+ V + QK ++
Sbjct: 365 LGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHLQKCVE 424
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K+F L AIK IIT+GL+YSLATGNWGDQ KA QARAGVSQVLNR TFAS+LSHLRR
Sbjct: 425 THKEFTLVNAIKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTLSHLRR 484
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG+ICPAETPEG A GLVKNLALM+YISVGS +P++EF
Sbjct: 485 TNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYSAPVMEF 544
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW +E +E + +ATK+FVNG W+GIHRD +L L ++RR + EVSI+
Sbjct: 545 LEEWGLEPQDEYG--SAPNATKVFVNGVWMGIHRDAVKLHENLLEMRRGGQ-LKHEVSIV 601
Query: 559 RDIRDREIRIHTDAGRICRPLLIAE--NGSLLLKKRHIDNLK------ERDYNNYGWQVL 610
RDIR+RE+R++TDAGR+CRPL I + +L LK+ HID L+ E + W L
Sbjct: 602 RDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLENIADGLEEAVDGSAWDEL 661
Query: 611 VQSGVVEYIDTLEEETTMIAM 631
+ GV+EY+D EEET +IAM
Sbjct: 662 LYQGVIEYVDAEEEETILIAM 682
>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum
Liverpool]
gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum
Liverpool]
Length = 1260
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 326/669 (48%), Positives = 448/669 (66%), Gaps = 41/669 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
Q+ACW V++++F GLV QQL+SF++F+ +Q I+++ P I+++ Q+ EVE+
Sbjct: 89 QDACWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIKPTPQYRPEEEVESN 148
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV----RQGE 117
Y LK +Q+ L++P+ EK+G + P EAR RNLTYS+PLYVD+ +T G
Sbjct: 149 VIYRLKMDQLSLNRPSVEEKEGISKHLWPYEARTRNLTYSSPLYVDVEQTTYTVDPETGV 208
Query: 118 EPVTTQ--HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
E + Q + + +G+IP+ML+S YC L + DL ++ EC D GGYFIING EKVL+
Sbjct: 209 ERLVDQVTYSRVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFIINGGEKVLV 268
Query: 176 AQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS--LKKSAI 232
AQE+MA+N VYVF K SK+ + E+RS E + TS V +R G+ K
Sbjct: 269 AQERMASNFVYVFQKKQPSKFGWVAEVRSQKE-GMQATSGFAVKKRSRTGEGRGAKGGRP 327
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
G +I+A LPYI+ EIPI+I+FRALG ++DRDIL + YD DP+++ ++KPSL+E F
Sbjct: 328 GGQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLISLMKPSLEEGFDYG 387
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q+V L+FIG RG G +E+RI+YARE+L+KE+LPHVG CE KKA+F+GYMVHRL
Sbjct: 388 SQDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGTEAGCENKKAFFIGYMVHRL 447
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
LLA LGR DDRDH+ VR Q+ +D GK F++
Sbjct: 448 LLADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKDVRRILQRQVDHGKSFDVA 507
Query: 387 LAIKTKI-ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
AI++ IT GL+Y +ATGNWG K+ R GV+QVLNRLTFAS+LSHLRR+N+P+GR
Sbjct: 508 GAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRLTFASALSHLRRLNTPLGR 567
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GK+AKPRQLHNT WGMICPAETPEG AVGLVKNLALM+ ISVGS + + EFL EW ++
Sbjct: 568 EGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDISVGSATNTVHEFLVEWGLD 627
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE+ P I + K+FVNG WVG + + L TLR+LRR+ D I SE SI+RD+ +RE
Sbjct: 628 PLEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQTLRQLRRRCD-ISSETSIVRDLVNRE 686
Query: 566 IRIHTDAGRICRPLLIAENGS--LLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLE 623
++I TDAGR RPL + + G+ L++K+ H++ L+ R + W L++ G++E++D E
Sbjct: 687 VKIFTDAGRAMRPLFVVDEGTRDLVMKRGHLEELQRRGKDEKSWGYLMEKGIIEFVDCEE 746
Query: 624 EETTMIAMW 632
EET MIAM+
Sbjct: 747 EETCMIAMF 755
>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
higginsianum]
Length = 1258
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 333/712 (46%), Positives = 456/712 (64%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++F+ KGLV QQ+DSFDEF +VQ ++++ QI L Q S +V
Sbjct: 23 EDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALR 82
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV-- 120
RY +KF + +S+P+ E DG + ++P E R RNLTY++PLYV ITK V E+P+
Sbjct: 83 RYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPL 142
Query: 121 -------------TTQH-------------------QKS-------FIGKIPIMLRSTYC 141
T +H KS FIG++PIM++S C
Sbjct: 143 NELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKIC 202
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTE 200
L+ + DL LNECP D GGYFIINGSEKVLIAQE+ A N V VF + S Y+Y E
Sbjct: 203 HLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPSPYSYTAE 262
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S++ + + ++G + K GQ I LPY+K ++PI IVFRALG V+
Sbjct: 263 IRSALEKGSRLISSMMLKLYSKGDAA--KGGYGQTIHCSLPYVKADLPIAIVFRALGVVS 320
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D DIL HI YD +D +M+EM++P ++EAF IQ++ VAL+FIG RG+ + +E+R++ A+
Sbjct: 321 DEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGSNHNIPREKRVRTAK 380
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
+ILQKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR+ DDRDH+
Sbjct: 381 DILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLL 440
Query: 369 -------VRMYAQKF-------IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Q+ ++ + F+L L +K + +++GL+YSLATGNWGDQKKA
Sbjct: 441 AKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAM 500
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 501 SSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 560
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNL+LM Y+SVG+ PI++++ + ME LEE P +ATK+F+NG WVG+H+DP
Sbjct: 561 GLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDP 620
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE--------NGS 586
L+ ++ RR+ ++I EVS++RDIRDRE +I +DAGR+ RP+ + E GS
Sbjct: 621 RILVPDVQGTRRR-NVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQGANGIVPQGS 679
Query: 587 LLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+L+K ++ ++++ N W+ L SGV+EY+D EEET MI M
Sbjct: 680 LVLQKATVNEMRDQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICM 731
>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
[Leptosphaeria maculans JN3]
Length = 1360
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 337/728 (46%), Positives = 451/728 (61%), Gaps = 92/728 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E E P
Sbjct: 122 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYDPNEDENPII 181
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK---------- 110
RY + F ++YL++PTH E DG+ + P+EARLRNLTYS + DI+
Sbjct: 182 KRRYEITFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADISNRIMVAREHNA 241
Query: 111 ------------------TVVRQGEEPVTTQHQKS---FIGKIPIMLRSTYCLLNGLTDR 149
T +R E + + + + FIGK+P+MLRS C L +D
Sbjct: 242 MVEGEDDDLDGGYTAGGATQIRWEREDMPGEEEAAARVFIGKLPVMLRSELCHLRNQSDA 301
Query: 150 DLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSS 209
DL LNECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +
Sbjct: 302 DLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGT 361
Query: 210 RPTSTL---WVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
R S+ W GG K G A LPY+K EIP+ IVFRALG V+D +IL
Sbjct: 362 RLISSFTIKWAENSLAGG----KRVPGPFAYATLPYVKSEIPMAIVFRALGIVSDEEILS 417
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKE 326
HI+YD D +M+E++KPS++E V+Q++ AL+FI RGA+ TK+RR+K+AR+I+Q+E
Sbjct: 418 HIVYDRTDTQMLELLKPSIEEGSVVQDRESALDFIARRGAQQA-TKDRRLKFARDIMQRE 476
Query: 327 MLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
LPH+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 477 FLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRI 536
Query: 369 --------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 420
V Y Q+ ++ +DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGV
Sbjct: 537 LFLKLTKDVFKYLQRCVESNQDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGV 596
Query: 421 SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 480
SQVLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL
Sbjct: 597 SQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNL 656
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
+LM Y+SVGS SPI++F+ + +M+ LEE + DATKIFVNG WVG+H +P QL+
Sbjct: 657 SLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQSPDATKIFVNGVWVGVHSNPHQLVSV 716
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG-------SLLLKK-- 591
+++LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN L+ K
Sbjct: 717 VQELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVIENDIRKPNRHQLIFTKEI 775
Query: 592 -RHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEE 650
R + +E GW + E+ W+ L+Q GV+EY+D EEE
Sbjct: 776 SRKLTYEQETQDQRQGW-------------SEEDIAAATYGWKGLIQDGVIEYLDAEEEE 822
Query: 651 TTMIAMSP 658
T MI SP
Sbjct: 823 TAMITFSP 830
>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
Length = 1266
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 339/714 (47%), Positives = 451/714 (63%), Gaps = 89/714 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E W +I+AYFD+K LV QQ+DSF+EF +VQ ++++ + L Q+ S
Sbjct: 27 EDSWKIISAYFDKKSLVSQQIDSFNEFTTTTVQSLIDEHSLLTLDQSNPPIASDRPVKLR 86
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--------- 113
RY +KF I +SKP E DG S + P E R RNLTYS P+Y ITK V
Sbjct: 87 RYEIKFGNIMVSKPQFAEGDGRVSTLTPYECRDRNLTYSCPIYARITKKVSLAVDEPIPD 146
Query: 114 ------------RQGEEPVTT----------QHQKS----------FIGKIPIMLRSTYC 141
R GE+P ++K F+G++PIM++S C
Sbjct: 147 DELDEEQIEEMQRTGEQPTRIVWEEEPSDLPDYEKDKADEDMKDMVFMGRLPIMVKSKIC 206
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTE 200
L + L LNECP D GGYFIINGSEKVLIAQE+ A N V VF + SK++Y E
Sbjct: 207 HLAYEDEDGLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPSKFSYTAE 266
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S+L + ++A+G + + GQ + LPYIK E+PI +VFRALG V+
Sbjct: 267 IRSALEKGSRLISSLSIMLVAKGDTG--RGSFGQTVHTTLPYIKSELPIAVVFRALGVVS 324
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYA 319
D DIL HI YD +D +M+EM++P ++EAF IQ++ VAL+FIG RG G++++ R++ A
Sbjct: 325 DEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGQNSHGISRKDRVRAA 384
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------- 368
R+ILQKEMLPH+ S+ CET+KA+FLGYMVH+LL +LGRR++DDRDH+
Sbjct: 385 RDILQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGSL 444
Query: 369 ---------VRMYAQ------KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
+MY + + +D GK F+L + I+ + +T+GL+YSLATGNWGDQKKA
Sbjct: 445 LAKLFRGIIRKMYQELMNHLKRCVDTGKHFDLRVGIRHQTLTNGLKYSLATGNWGDQKKA 504
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
+ AGVSQVLNR TF+S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 505 MSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQA 564
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNL+LM Y+SVG+ PI+EF+ +ME LEE P +ATKIFVNG WVG+H+D
Sbjct: 565 CGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLEEYEPLRYPNATKIFVNGSWVGVHQD 624
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI----------AE 583
P+ L+ ++ LRR+ +I SEVS++RDIRDRE +I +DAGR+ RPL E
Sbjct: 625 PKHLVSLVQGLRRK-GVIQSEVSLVRDIRDREFKIFSDAGRVMRPLFAIEQEDNADSGVE 683
Query: 584 NGSLLLKKRHI------DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K H+ + L + D +GW + +G +EY+D EEET MI M
Sbjct: 684 KGMLVLTKEHVQRLDADEGLSKDDPKYFGWDGICDAGAIEYLDAEEEETAMICM 737
>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
Length = 1262
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 331/714 (46%), Positives = 453/714 (63%), Gaps = 64/714 (8%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E + P
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNPDEEDNPII 84
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--RQGEE 118
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI V+ R+G +
Sbjct: 85 KRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRVMVAREGRD 144
Query: 119 P------------VTTQHQ----------------KSFIGKIPIMLRSTYCLLNGLTDRD 150
P Q+Q + FIGK+P+MLRS C L +D D
Sbjct: 145 PEADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L LNECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264
Query: 211 PTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIY 270
S+ + K G A LPYIK ++P+ IVFRALG V+D +IL HI++
Sbjct: 265 LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVF 324
Query: 271 DFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPH 330
D +D + +E++KPS++E V+Q++ AL+FI RGA G T++RR+K+AR+I+Q+E LPH
Sbjct: 325 DRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TRDRRLKFARDIMQREFLPH 383
Query: 331 VGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------------- 368
+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 384 ISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLK 443
Query: 369 ----VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
V Y Q+ ++ +DFN+++A+K IT+GL+YSLATGNWGDQKKA A+AGVSQVL
Sbjct: 444 LTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAASAKAGVSQVL 503
Query: 425 NRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA 484
NR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM
Sbjct: 504 NRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMC 563
Query: 485 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKL 544
Y+SVGS +PI++F+ + +M+ LEE + DATK+FVNG WVG+H + +QL+ +++L
Sbjct: 564 YVSVGSDATPIVDFMTQRNMQLLEEYDQNQSPDATKVFVNGVWVGVHSNAQQLVTVVQEL 623
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN 604
RR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + H+ KE N
Sbjct: 624 RRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDVRKPNRNHLIFTKEIS-NK 681
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ + S + + E+ T W+ L+Q GVVEY+D EEET MI SP
Sbjct: 682 LKSEQMEASQRQGWSEEEVEQATY--GWRGLIQDGVVEYLDAEEEETAMITFSP 733
>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1259
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 333/712 (46%), Positives = 456/712 (64%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++F+ KGLV QQ+DSFDEF +VQ ++++ QI L Q S +V
Sbjct: 23 EDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALR 82
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV-- 120
RY +KF + +S+P+ E DG + ++P E R RNLTY++PLYV ITK V E+P+
Sbjct: 83 RYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPL 142
Query: 121 -------------TTQH-------------------QKS-------FIGKIPIMLRSTYC 141
T +H KS FIG++PIM++S C
Sbjct: 143 NELDEEQQEELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKIC 202
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTE 200
L+ + DL LNECP D GGYFIINGSEKVLIAQE+ A N V VF + S Y+Y E
Sbjct: 203 HLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPSPYSYTAE 262
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S++ + + ++G + K GQ I LPY+K ++PI IVFRALG V+
Sbjct: 263 IRSALEKGSRLISSMMLKLYSKGDAA--KGGYGQTIHCSLPYVKSDLPIAIVFRALGVVS 320
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D DIL HI YD +D +M+EM++P ++EAF IQ++ VAL+FIG RG+ + +E+R++ A+
Sbjct: 321 DEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGSNHNIPREKRVRTAK 380
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
+ILQKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR+ DDRDH+
Sbjct: 381 DILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLL 440
Query: 369 -------VRMYAQKF-------IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Q+ ++ + F+L L +K + +++GL+YSLATGNWGDQKKA
Sbjct: 441 AKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKAA 500
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 501 SSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 560
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNL+LM Y+SVG+ PI++++ + ME LEE P +ATK+F+NG WVG+H+DP
Sbjct: 561 GLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQDP 620
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE--------NGS 586
L+ ++ RR+ ++I EVS++RDIRDRE +I +DAGR+ RP+ + E GS
Sbjct: 621 RILVPDVQGTRRR-NVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSPTGIVPQGS 679
Query: 587 LLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+L+K ++ ++++ N W+ L SGV+EY+D EEET MI M
Sbjct: 680 LVLQKGTVNEMRDQQENPPDNPNDKITWETLAHSGVIEYLDAEEEETAMICM 731
>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1208
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 331/716 (46%), Positives = 451/716 (62%), Gaps = 68/716 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E + P
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNPDEEDNPII 84
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--RQGEE 118
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI V+ R+G +
Sbjct: 85 KRRYEMKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRVMVAREGRD 144
Query: 119 P------------VTTQHQ----------------KSFIGKIPIMLRSTYCLLNGLTDRD 150
P Q+Q + FIGK+P+MLRS C L +D D
Sbjct: 145 PDADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L LNECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264
Query: 211 PTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIY 270
S+ + K G A LPYIK ++P+ IVFRALG V+D +IL HI++
Sbjct: 265 LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVF 324
Query: 271 DFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPH 330
D +D + +E++KPS++E V+Q++ AL+FI RGA G T++RR+K+AR+I+Q+E LPH
Sbjct: 325 DRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TRDRRLKFARDIMQREFLPH 383
Query: 331 VGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------------- 368
+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 384 ISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLK 443
Query: 369 ----VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
V Y Q+ ++ +DFN+++A+K IT+GL+YSLATGNWGDQKKA A+AGVSQVL
Sbjct: 444 LTKDVYKYLQRCVENNQDFNVQMAVKASTITNGLKYSLATGNWGDQKKAASAKAGVSQVL 503
Query: 425 NRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA 484
NR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM
Sbjct: 504 NRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMC 563
Query: 485 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKL 544
Y+SVGS +PI++F+ + +M+ LEE + DATK+FVNG WVG+H + +QL+ +++L
Sbjct: 564 YVSVGSDATPIVDFMTQRNMQLLEEYDQNQSPDATKVFVNGVWVGVHSNAQQLVTVVQEL 623
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKE--RDY 602
RR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + H+ KE
Sbjct: 624 RRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDVRKPNRNHLIFTKEISNKL 682
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ + + G E EE W+ L+Q GVVEY+D EEET MI SP
Sbjct: 683 KSEQMEANQRQGWSE-----EEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSP 733
>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
Length = 1270
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 336/718 (46%), Positives = 446/718 (62%), Gaps = 99/718 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGL QQ DSFDEF Q VQ +V + I L QH PP
Sbjct: 21 EDCWTVISSFFETKGLASQQTDSFDEFTQTMVQDLVNEYSTITLD---QHNPP---APPG 74
Query: 63 ------RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--- 113
RY +KF + +S+P+ E DG+ + ++P E R RNLTY+AP Y+ ITK V
Sbjct: 75 VNIALRRYEIKFGSVMVSRPSMSETDGTVTNLLPYECRDRNLTYAAPTYLKITKKVSVAV 134
Query: 114 ------------------RQGEEP-------------VTTQHQKS---FIGKIPIMLRST 139
R GE P + + + S FIGK+PIM++S
Sbjct: 135 DKEIPLHEMDDEQQAEYKRTGENPTKLVWEVEEDAGSIKAEDEPSEMIFIGKMPIMVKSK 194
Query: 140 YCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYK 198
C L+ +D DL LNECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y Y
Sbjct: 195 ICHLSSHSDEDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYT 254
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 258
EIRS LE SR S+L + + +G + + GQ I A LP++K ++P+ IVFRALG
Sbjct: 255 AEIRSALEKGSRLISSLTMKLYGKGDSA--RGGFGQTIQATLPFVKADLPVAIVFRALGV 312
Query: 259 VADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRI 316
V+D DIL HI YD +D +M+EM++P ++EAF +Q++ VAL+FIG RG R + +E+R+
Sbjct: 313 VSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLGREKRV 372
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----- 371
+ A++ILQKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 373 RVAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLA 432
Query: 372 ---------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQ 410
Y ++ ++ ++FNL +AIK +++GL+YSLATGNWGDQ
Sbjct: 433 GPLLAKLFRGIIRRINTELSNYLKRCVESNRNFNLTVAIKPSTLSNGLKYSLATGNWGDQ 492
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
KKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPE
Sbjct: 493 KKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 552
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 530
G A GLVKNL+LM Y+SVGS P++EF+ ME +EE P+ ATKIFVNG WVG+
Sbjct: 553 GQACGLVKNLSLMCYVSVGSPADPLIEFMINRGMEVVEEYEPTRYPHATKIFVNGSWVGV 612
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA------EN 584
H DP+ L+ + RR+ + EVS++RDIRDRE +I +DAGR+ RP+ EN
Sbjct: 613 HADPKHLVNQVLDTRRK-SYVQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVHQEDDYEN 671
Query: 585 ----GSLLLKKRHIDNLKERD-------YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K H++ L + + +GW L++ G VEY+D EEET MI M
Sbjct: 672 NITKGQLVLTKDHVNRLAQEQAEPPANPADKFGWDGLIREGAVEYLDAEEEETAMICM 729
>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
Length = 1208
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 334/724 (46%), Positives = 448/724 (61%), Gaps = 84/724 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E + P
Sbjct: 25 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPII 84
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--TVVRQGEE 118
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI V R+G +
Sbjct: 85 KRRYEIKFGRVYLARPTHTEGDGTTVQLYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144
Query: 119 PVTTQHQ----------------------------KSFIGKIPIMLRSTYCLLNGLTDRD 150
P + + + FIGK+P+MLRS C L +D D
Sbjct: 145 PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L LNECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 205 LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264
Query: 211 PTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIY 270
S+ + K G A LPYIK ++P+ IVFRALG V+D +IL HI+Y
Sbjct: 265 LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVY 324
Query: 271 DFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPH 330
D D +M+E++KPS++E V+Q++ AL+FI RGA G TK+RR+K+AR+I+Q+E LPH
Sbjct: 325 DRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPH 383
Query: 331 VGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------------- 368
+ + +T+KAYF GYM+HRLL LGRR+ DDRDH+
Sbjct: 384 ISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLK 443
Query: 369 ----VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
V Y Q+ ++ +DFN+++A+K IIT+GL+YSLATGNWGDQK A A AGVSQVL
Sbjct: 444 LTKDVYKYLQRCVENNQDFNVQMAVKASIITNGLKYSLATGNWGDQKXAASAXAGVSQVL 503
Query: 425 NRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA 484
NR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM
Sbjct: 504 NRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMC 563
Query: 485 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKL 544
Y+SVGS SPI++F+ + +M+ LEE + DATK+FVNG WVG+H + +QL+ +++L
Sbjct: 564 YVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQEL 623
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL 597
RR + E+S+IRDIRDRE +I TDAGR+ RPL + EN L+ K + L
Sbjct: 624 RRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEISNKL 682
Query: 598 K---ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
K + GW + EE W+ L+Q GVVEY+D EEET MI
Sbjct: 683 KAEQQETSTRQGW-------------SQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMI 729
Query: 655 AMSP 658
SP
Sbjct: 730 TFSP 733
>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium
albo-atrum VaMs.102]
gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium
albo-atrum VaMs.102]
Length = 1260
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 329/713 (46%), Positives = 455/713 (63%), Gaps = 89/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++FD KGLV QQ+DSFDEF +VQ ++++ I L Q S
Sbjct: 24 EDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITLDQPNPASDSDRAIALR 83
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--------- 113
RY +KF + +S+P+ E DG S ++P E R RNLTY++PLYV ITK V
Sbjct: 84 RYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITKKVSIAVENQIPL 143
Query: 114 ------------RQGEEPVTTQHQKS--------------------FIGKIPIMLRSTYC 141
R GE P + ++ FIG++PIM++S C
Sbjct: 144 NELDDEQHDEMGRTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGRMPIMVKSKIC 203
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTE 200
L+ ++ DL LNECP D GGYF+INGSEKVLIAQE+ A N V VF + S ++Y E
Sbjct: 204 HLSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFSYTAE 263
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S+L + + ++ S K +GQ I LPY+K +IPI IVFRA G V+
Sbjct: 264 IRSALEKGSRLISSLMLKLHSK---SPAKGGVGQTIHCTLPYVKVDIPIGIVFRAFGIVS 320
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKYA 319
D DIL HI YD +D +M+EM++P ++EAF++Q++NVAL++IG RG + +T+E+R++ A
Sbjct: 321 DEDILNHICYDRNDTQMLEMLRPCIEEAFIVQDRNVALDWIGKRGNSNHTMTREKRVRSA 380
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------- 368
+EILQKE LPH+ S+ ET+KA+FLGYM H+LL +LGRR++DDRDH+
Sbjct: 381 KEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKRLDLAGPL 440
Query: 369 --------VRMYAQKF-------IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
VR Q+ ++ + F+L L +K + +++GL+YSLATGNWGDQKKA
Sbjct: 441 LAKLFRTIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKA 500
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A
Sbjct: 501 ASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 560
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNL+LM Y+SVG+ PI++++ + ME LEE P +ATK+F+NG WVG+H+D
Sbjct: 561 CGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQD 620
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE--------NG 585
P L+ ++ RR+ ++I EVS++RDIRDRE +I +DAGR+ RP+ + E G
Sbjct: 621 PRVLVPDVQGTRRR-NVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVPQG 679
Query: 586 SLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
SL+L+K ++ ++++ N WQ L SG++EY+D EEET+MI M
Sbjct: 680 SLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICM 732
>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
VdLs.17]
Length = 1260
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 329/713 (46%), Positives = 454/713 (63%), Gaps = 89/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++FD KGLV QQ+DSFDEF +VQ ++++ I L Q S
Sbjct: 24 EDCWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITLDQPNPASDSDRAIALR 83
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---------- 112
RY +KF + +S+P+ E DG S ++P E R RNLTY++PLYV ITK V
Sbjct: 84 RYEVKFGTVMVSRPSITEADGKVSTLLPYECRDRNLTYASPLYVRITKKVSIAVENQIPL 143
Query: 113 -----------VRQGEEPVTTQHQKS--------------------FIGKIPIMLRSTYC 141
R GE P + ++ FIG++PIM++S C
Sbjct: 144 NELDDEQHDEMARTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGRMPIMVKSKIC 203
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTE 200
L+ ++ DL LNECP D GGYF+INGSEKVLIAQE+ A N V VF + S ++Y E
Sbjct: 204 HLSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFSYTAE 263
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S+L + + + S K +GQ I LPY+K +IPI IVFRA G V+
Sbjct: 264 IRSALEKGSRLISSLMLKLHS---TSPAKGGVGQTIHCTLPYVKVDIPIGIVFRAFGIVS 320
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKYA 319
D DIL HI YD +D +M+EM++P ++EAF++Q++NVAL++IG RG + +T+E+R++ A
Sbjct: 321 DEDILNHICYDRNDTQMLEMLRPCIEEAFIVQDRNVALDWIGKRGNSNHTMTREKRVRSA 380
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------- 368
+EILQKE LPH+ S+ ET+KA+FLGYM H+LL +LGRR++DDRDH+
Sbjct: 381 KEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKRLDLAGPL 440
Query: 369 --------VRMYAQKF-------IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
VR Q+ ++ + F+L L +K + +++GL+YSLATGNWGDQKKA
Sbjct: 441 LAKLFRTIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTLSNGLKYSLATGNWGDQKKA 500
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A
Sbjct: 501 ASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 560
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNL+LM Y+SVG+ PI++++ + ME LEE P +ATK+F+NG WVG+H+D
Sbjct: 561 CGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQD 620
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE--------NG 585
P L+ ++ RR+ ++I EVS++RDIRDRE +I +DAGR+ RP+ + E G
Sbjct: 621 PRVLVPDVQGTRRR-NVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVPQG 679
Query: 586 SLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
SL+L+K ++ ++++ N WQ L SG++EY+D EEET+MI M
Sbjct: 680 SLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICM 732
>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum
NZE10]
Length = 1260
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 341/724 (47%), Positives = 454/724 (62%), Gaps = 87/724 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI----DLQAEAQHTSTEVE 59
E CW VI+++FD KGLV QQLDSFDEF ++Q IV ++ I ++ +E + ++ +
Sbjct: 30 EDCWTVIHSFFDAKGLVSQQLDSFDEFASTTMQEIVSETAPIVIDQNIASEDEGSNMPI- 88
Query: 60 TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------- 110
R L + + +S+ + DG + P+E+RLRNLTY++P+++ ITK
Sbjct: 89 IKKRIELHLQDVTISQAAMTDGDGVTRALFPHESRLRNLTYASPIFLSITKKQKLCRERS 148
Query: 111 --------------------TVVRQGEEPVTTQHQKS--FIGKIPIMLRSTYCLLNGLTD 148
T + E+P + FIGK+PIML+S C L ++
Sbjct: 149 VGGYLDETGYWNDPPDFDGQTELHWEEDPDHPDETQGDIFIGKLPIMLKSKICALRNRSE 208
Query: 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHS 208
++L ECP D GGYFIINGSEKVLIAQE+ A N V VF K + EIRS +E
Sbjct: 209 QELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGTNTPVVAEIRSAIEKG 268
Query: 209 SRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
+R S++ + + QS +A GQ I +PYIK +IPI IVFRALG V+D DIL HI
Sbjct: 269 TRLISSMQLKLYK---QSANSNAHGQTIKVSVPYIKSDIPIAIVFRALGVVSDEDILNHI 325
Query: 269 IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEML 328
D M+E +KP L+EAFVIQ+++ AL+ IG RG + G TKERRI+YAR+I+QKE L
Sbjct: 326 CSK-SDTRMLEYLKPCLEEAFVIQDRDSALDHIGRRGQQQG-TKERRIRYARDIMQKEFL 383
Query: 329 PHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------------------- 368
PH+ + ETKKA+FLGYMV+RLL +LGR E DDRDH+
Sbjct: 384 PHISQEEGSETKKAFFLGYMVNRLLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKF 443
Query: 369 ------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
++ Y + I+ G++FN+ LAIK+ IIT GLRY LATGNWGDQKKA A+AGVSQ
Sbjct: 444 QQLVKDMKTYLHRCIEGGREFNIALAIKSNIITSGLRYCLATGNWGDQKKAASAKAGVSQ 503
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+L
Sbjct: 504 VLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSL 563
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M Y++VG+ P+++F+ + M+ LEE P ATKIF+NG W+G+H+D L TLR
Sbjct: 564 MCYVTVGTPAEPLIDFMRQRGMDLLEEYDPVLNPKATKIFLNGTWIGVHKDAGGLTNTLR 623
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHID 595
LRR+ ++ EV+IIRD+R+REI+I TD GR+CRPL + EN G+L+L++ H
Sbjct: 624 GLRRK-GVVSFEVTIIRDVREREIKIFTDCGRVCRPLFVVENDPKSTNNGNLVLQREHCQ 682
Query: 596 NLKERDYNNYGWQVLVQ-SGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
L + D N VL + GV E EE T I W+ L+ GVVEY+D EEET MI
Sbjct: 683 RLAD-DQN-----VLAELQGVSE-----EERETKIFGWKGLIDKGVVEYLDAEEEETAMI 731
Query: 655 AMSP 658
M+P
Sbjct: 732 IMTP 735
>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
Length = 1269
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 327/710 (46%), Positives = 443/710 (62%), Gaps = 85/710 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI+++F+ KGL QQ DSFDEF Q +VQ +V + I L + +S V
Sbjct: 22 EDCWTVISSFFETKGLASQQTDSFDEFTQRTVQDLVNEYADISLDQQNPPSSYGVPIALR 81
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--------- 113
RY +KF + +S+P+ E DG+ + ++P E R RNLTYS+P Y+ ITK V
Sbjct: 82 RYEIKFGSVMVSRPSISETDGTVASLLPYECRDRNLTYSSPAYIKITKKVSVAIDKEIPL 141
Query: 114 ------------RQGEEPVT--------------TQHQKSFIGKIPIMLRSTYCLLNGLT 147
R GE P Q F+GK+PIM++S C L+ T
Sbjct: 142 HEMDEEQQAEYKRTGEHPTKLHWEVEEDGDSMKEGQPNMIFVGKMPIMVKSKICHLSQHT 201
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLE 206
D +L LNECP D GGYF+INGSEKVLIAQE+ A N V VF + S + Y EIRS LE
Sbjct: 202 DEELFTLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTYTAEIRSALE 261
Query: 207 HSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
SR S+L + ++ +G + + GQ I LP++K ++P+ IVFRALG V+D DIL
Sbjct: 262 KGSRLISSLMMKILGKGDSA--RGGFGQTIQTSLPFVKSDLPVAIVFRALGVVSDEDILN 319
Query: 267 HIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRIKYAREILQ 324
HI YD +D +M+EM++P ++EAF +Q++ VAL+FIG RG R + +E+R++ A++ILQ
Sbjct: 320 HICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLGREKRVRVAKDILQ 379
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------------- 371
KE LPH+ S+ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 380 KETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLF 439
Query: 372 -------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
Y ++ ++ ++FNL +AIK +++GL+YSLATGNWGDQKKA + A
Sbjct: 440 RGIIRRMNQELSNYLKRCVESNRNFNLNVAIKPGTLSNGLKYSLATGNWGDQKKAASSTA 499
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVK
Sbjct: 500 GVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVK 559
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NL+LM Y+SVGS P+++F+ ME +EE P+ ATK+FVNG WVG+H +P L+
Sbjct: 560 NLSLMCYVSVGSPGEPLIDFMVSRGMEVVEEYEPTRYPHATKVFVNGSWVGVHPEPRALV 619
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN----------GSLL 588
++ + RR+ + EVS++RDIRDRE +I +DAGR+ RP+ + G L+
Sbjct: 620 NSVLETRRK-SYLQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVQQEDDYETGLTKGQLV 678
Query: 589 LKKRHIDNLKERD-------YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L K ++ + + GWQ L++SG VEYID EEET MI M
Sbjct: 679 LTKDLVNKIAQEQAEPPSDPSERIGWQGLIRSGAVEYIDAEEEETAMICM 728
>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
phaseolina MS6]
Length = 1258
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 333/706 (47%), Positives = 451/706 (63%), Gaps = 87/706 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+EKGLV QQ+DS+DEF++ ++ IVE I + HT E+ P
Sbjct: 25 EDCWTVISSFFEEKGLVAQQIDSYDEFVKNTLPNIVEHMGAITMD----HTPPIDESDPD 80
Query: 63 -----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDI-TKTVVRQG 116
RY + F ++ + +P+ G + P+EARLRNLTY+A + D+ TKT V +
Sbjct: 81 PIIKKRYEVNFGEVKMGRPS-LTDGGVTRDVFPHEARLRNLTYAAAMMSDMSTKTSVAR- 138
Query: 117 EEPVT-----------------------TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
E P+ T ++ F G++P+ML+S C L LTD L
Sbjct: 139 ERPIAPSGDMDEDETTGATELVWEVDSQTDKEQVFFGRLPVMLKSYVCGLRNLTDEQLYA 198
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
+ECP D GGYF+INGSEKVLIAQE+ A N V VF + S + EIRS +E SR S
Sbjct: 199 HSECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLS 258
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
++ + + + L K G + A LPY+K ++PI IVFRALG V+D DI+ HI +D +
Sbjct: 259 SMTLKLYEK--PQLWKEGQGCCLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKN 316
Query: 274 DPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP--GVTKERRIKYAREILQKEMLPHV 331
D ++ME ++PS++E+ +IQ++ AL+FIG RG+ P G TK R+K AR+I+QKE LPH+
Sbjct: 317 DNKLMEAIRPSIEESVLIQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHI 376
Query: 332 GVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------------------- 368
++ ETKKA+FLGYM++RLL LGRR+ DDRDH+
Sbjct: 377 SQTEGSETKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKL 436
Query: 369 ---VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLN 425
V Y +K ++ G+ F+L+ A+K I++GL+YSLATGNWGDQKKA ++AGVSQVLN
Sbjct: 437 TRDVYNYLKKCVEAGRPFSLQSAVKQGTISNGLKYSLATGNWGDQKKAASSKAGVSQVLN 496
Query: 426 RLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAY 485
R T++S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM +
Sbjct: 497 RYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCH 556
Query: 486 ISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLR 545
++VGS +PI +F+ + +ME LEE PS ATKIFVNG WVG+HRDP QL+ ++KLR
Sbjct: 557 VTVGSDVTPIQDFMTQRNMELLEEYEPSVSPHATKIFVNGVWVGVHRDPTQLVSVVKKLR 616
Query: 546 RQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI-------AENGSLLLKKRHIDNLK 598
R + E+S+IRD+RDRE +I TDAGR+CRPL I A G+L+L + HID L+
Sbjct: 617 RD-GTLSPEMSLIRDVRDREFKIFTDAGRVCRPLFIIDDNPTSANKGNLVLSREHIDKLE 675
Query: 599 -------------ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ERD YGW+ L+ SGVVEY+D EEE+ MI M
Sbjct: 676 EDQQIDVSGLSDDERDERRYGWKGLLTSGVVEYMDAEEEESAMIVM 721
>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM
1558]
Length = 1214
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 338/682 (49%), Positives = 434/682 (63%), Gaps = 62/682 (9%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L E W +I++YF+ KGLVRQQL+SF+EFI+ ++Q IV+++P I L AQ T E +
Sbjct: 15 LEGEDYWTIISSYFEGKGLVRQQLESFNEFIENTLQEIVDENPLIILDQHAQFTGKEGDE 74
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQG--E 117
R+ L+F QIYL++PT E DG +PM P EARLRNLTYSAPLYV+I + T V G E
Sbjct: 75 LRRHQLRFGQIYLARPTTTESDGIAAPMFPQEARLRNLTYSAPLYVEIERRTFVAAGADE 134
Query: 118 EPVTTQHQ--------------KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 163
+P+ T+ Q K+FIGK+P+M+RS +C L L D L L ECP D GG
Sbjct: 135 DPLDTEWQPLLDAYGEPVVEKTKAFIGKVPVMVRSHFCHLENLPDESLYHLKECPYDSGG 194
Query: 164 YFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARG 223
YF++ GSEKVLIAQE+MA N VYVF K S Y Y + S +E + S V M R
Sbjct: 195 YFVVKGSEKVLIAQERMAANQVYVFR-KQSPYTYFATVTSQMERGGKMPSETEVRMYPRS 253
Query: 224 GQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 283
S I R LPYIK IPI+IVFRALG +AD DILEHI ++ D +M+EM++P
Sbjct: 254 SGGTTGSVIHVR----LPYIKVPIPIVIVFRALGIIADSDILEHICFNMGDTQMLEMLRP 309
Query: 284 SLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 343
++EAF IQ + AL+FIG R + T+ +R A +ILQKE LPHV VS+ E+KKAY
Sbjct: 310 CVEEAFAIQSRETALDFIGRRHNKDIGTRMQRQLVAFDILQKEFLPHVSVSEGFESKKAY 369
Query: 344 FLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFI 377
FLGYM+HRL A+L RR+LDDRDH+ V + I
Sbjct: 370 FLGYMIHRLCSAALNRRDLDDRDHFGNKRMDLAGPLLANLFRGLFKNLTKRVHRHLTTCI 429
Query: 378 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLR 437
++ + F A++ IITDG RY++ATGNWG R GVSQVLNR T+AS+LSHLR
Sbjct: 430 EKNRPFVFSEALQPSIITDGFRYAIATGNWG---TGTNRRVGVSQVLNRYTYASTLSHLR 486
Query: 438 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 497
R N+PI R K KPRQLHNT WGM+CPAETPEGAA GLVKNLAL++YISVGS +P++E
Sbjct: 487 RTNTPIDRGSKATKPRQLHNTHWGMVCPAETPEGAACGLVKNLALLSYISVGSYAAPVME 546
Query: 498 FLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSI 557
FLEEW +E+ E + ATK+FVNG W+G+HR+ L L ++RR + EVSI
Sbjct: 547 FLEEWGLEDQSEFQHN--PGATKVFVNGVWMGVHRNAGTLYANLLQMRRGGQ-LKHEVSI 603
Query: 558 IRDIRDREIRIHTDAGRICRPLLIAE--NGSLLLKKRHIDNLK------ERDYNNYGWQV 609
+RDIR+RE+R+ TDAGR+CRPLLI + SL +KK HI+ + E W
Sbjct: 604 VRDIRERELRLCTDAGRVCRPLLIVDQRTQSLKIKKSHIERTEILLEGGEDIATGSAWIE 663
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L+ GV+EY+D EEET +IAM
Sbjct: 664 LLNDGVIEYVDAAEEETILIAM 685
>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
Length = 1233
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 320/572 (55%), Positives = 408/572 (71%), Gaps = 54/572 (9%)
Query: 105 YVDITKTV--VRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPG 162
+VD++ V + G K F+G +PIMLRS +C+L +D++L EL EC D G
Sbjct: 173 HVDVSARVRLINGGSSTHRIDSPKEFLGYVPIMLRSRFCVLADKSDKELCELGECIYDQG 232
Query: 163 GYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMA 221
GYF+INGSEKV++AQE+M+ N VY F K KY++ E RS +EH +RPTST+++ M
Sbjct: 233 GYFVINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYN 292
Query: 222 RGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMV 281
+ G+ + G +I LPY++ ++P+++VFRALGFVADRDILEH++YDF D EMME +
Sbjct: 293 KAGRGQSQ---GNQIRVTLPYVRVDVPVIVVFRALGFVADRDILEHVVYDFSDTEMMERL 349
Query: 282 KPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKK 341
+PSLDEAFVIQ Q +AL+FIG RG+ + + +R++YA+E+LQKE+LPHVG + +TKK
Sbjct: 350 RPSLDEAFVIQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKK 409
Query: 342 AYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQK 375
A+F+GY+VH+LL+ SL R + DDRDHY V Y QK
Sbjct: 410 AFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQK 469
Query: 376 FIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSH 435
ID G+DFNL AIK++++TDGLRYSLATGNWGD+K A +RAGVSQVLNRLT+AS+LSH
Sbjct: 470 CIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDA--SRAGVSQVLNRLTYASTLSH 527
Query: 436 LRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPI 495
LRR+N+P+GR+GK AKPRQLHNT WG ICPAETPEG AVGLVKNLALM+Y+SVGS SPI
Sbjct: 528 LRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPI 587
Query: 496 LEFLEEWSMENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS 553
LEFLEEWSMENLEEI+P IAD TKIFVNG WVG+HRDP L TLR LRRQ+DI
Sbjct: 588 LEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDID-P 646
Query: 554 EVSIIRDIRDREIRIHTDAGRICRPLLIAENGS--------------LLLKKRHIDNLKE 599
EVS++RDI+++E+R++TDAGR+CRPLLI E S L L+K H+ L
Sbjct: 647 EVSVVRDIKEKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQELRLRKSHVQKLVN 706
Query: 600 RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
D GW L+ G+VE IDT EEET MIAM
Sbjct: 707 GD---LGWTQLLVKGLVELIDTEEEETAMIAM 735
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 84/108 (77%), Gaps = 1/108 (0%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEV-ETP 61
QE W VI+AYF EKGLVRQQLDSFDEFIQ ++Q +V+DS ++ ++ EAQ+ ++ TP
Sbjct: 5 QEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELVVKPEAQYAPGQLAATP 64
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDIT 109
Y + F Q+Y+SKPT EKDG+ S M P+EARLRN+TY++P+YVDI+
Sbjct: 65 STYFVLFNQVYVSKPTATEKDGTTSNMFPHEARLRNMTYASPMYVDIS 112
>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
42464]
Length = 1276
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 332/712 (46%), Positives = 441/712 (61%), Gaps = 87/712 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI AYFD KGLV QQ+DSFDEF ++Q +V++ + L +
Sbjct: 41 EDCWEVIAAYFDSKGLVSQQIDSFDEFTSTTIQSLVDEYADLTLDHPNPGDDAGRDIAMR 100
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY + F+ + +SKPT E G + ++P E R RNLTYSAP+Y + K
Sbjct: 101 RYDIHFDNVLISKPTLTEATGETTSLLPYECRDRNLTYSAPMYCRVMKRARVAINEEVPL 160
Query: 112 ----------VVRQGEEP---------------VTTQHQKS---FIGKIPIMLRSTYCLL 143
+ R GE P QK F+GK+P+M++S C L
Sbjct: 161 KDMDEEQQEYMARTGEVPKIIRWEEEDTGPSEGAKGDDQKGDLIFLGKLPVMVKSQVCHL 220
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIR 202
+G + L LNECP D GGYFIINGSEKVLIAQE+ A N V VF +Y+ EIR
Sbjct: 221 HGEDEESLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIR 280
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S LE SR S+L + + +G S +K + + LPY+++++ + IVFRALG V+D
Sbjct: 281 SALEKGSRLISSLQMKLHTKG--SPEKGRLPNTVSVTLPYVREDVSLAIVFRALGIVSDE 338
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKYARE 321
DIL HI YD D +M+E ++P ++EAF IQ++ +AL+FIG RG G + R++ A+E
Sbjct: 339 DILNHICYDRTDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNGNAGQNRVNRVRAAKE 398
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
+LQKEMLPH+ ++ CET+KA+FLGYMVH+LL +LGRR+ DDRDH+ +
Sbjct: 399 LLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKRLDLAGPLLA 458
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y ++ ID K+F+L L IK +T+GL+YSLATGNWGDQKKA
Sbjct: 459 KLFRGVIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKYSLATGNWGDQKKAMS 518
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A G
Sbjct: 519 STAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACG 578
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNL+LM Y+SVG+ PI+EF+ ME LEE P +ATK+FVNG WVGIH+DP+
Sbjct: 579 LVKNLSLMCYVSVGTPADPIVEFMIARGMEVLEEYEPLQYPNATKVFVNGTWVGIHQDPK 638
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI----------AENG 585
L+ ++ LRR+ ++I EVS++RDIRDRE +I +DAGR+ RPL AE G
Sbjct: 639 NLVSLVQGLRRK-NVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQDPNSESGAEVG 697
Query: 586 SLLLKKRHIDNLK-ERDYNNY-----GWQVLVQSGVVEYIDTLEEETTMIAM 631
+L+L K HI L+ +++ Y GW L++SG +EY+D EEET MI M
Sbjct: 698 ALILNKEHIARLEADKELGKYHPDYWGWPGLLKSGAIEYLDAEEEETVMICM 749
>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1131
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 328/610 (53%), Positives = 412/610 (67%), Gaps = 71/610 (11%)
Query: 80 EKDGSPSPMMPNEARLRNLTYSAPLYVDITKT-VVRQGE------EPV---------TTQ 123
E DG+ SPM PNEARLRNLTYS+PLYVD++K+ + GE EP+
Sbjct: 3 ESDGTVSPMFPNEARLRNLTYSSPLYVDMSKSNKLATGEFDEETGEPIYIADDVDNDEKN 62
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
+ +IGK+PIMLRS +C+L+ L D L ELNECP D GGYF+INGSEKVLIAQE+MA N
Sbjct: 63 STQIYIGKVPIMLRSEFCILDKLEDPGLYELNECPFDQGGYFVINGSEKVLIAQERMAAN 122
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYI 243
VYVF+ K A +E S+ S++ V M GG +K+ G I LPYI
Sbjct: 123 HVYVFA-KAGPLA--------VEKGSKTVSSMQVKMY--GGHKAEKAGGGATIKTTLPYI 171
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGA 303
+ +IPI++VFRALG + D+DILEHI YD +D M EM+KP L+++F IQEQ VAL+FIG
Sbjct: 172 RNDIPIVVVFRALGIIPDKDILEHICYDRNDTAMFEMLKPCLEDSFPIQEQEVALDFIGR 231
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH------------- 350
RG G+++E+R+KYA EILQKEMLPH+ +S+ + KKAYF GYM+H
Sbjct: 232 RGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGKKAYFFGYMIHRLLLAALDRRDLD 291
Query: 351 --------RL-----LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDG 397
RL LLA L R V + QK ++ K FNL A+K+ IT+G
Sbjct: 292 DRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQKCVEMQKPFNLNAAVKSNTITNG 351
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
L+YSLATGNWGDQKKA QARAGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHN
Sbjct: 352 LKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHN 411
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
+ WGM+CPAETPEG A GLVKNLALM+YISVGS +PI+EFLEEW ME+L+E + S +++
Sbjct: 412 SHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMESLDEFS-SDMSN 470
Query: 518 ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICR 577
TK+FVNG W G+HR P +L+ T+++LRR D I EVS++RD+R+RE+R+ TD GR+CR
Sbjct: 471 GTKVFVNGVWQGVHRAPAELLDTIKRLRRCGD-IEPEVSVMRDVRERELRVFTDGGRVCR 529
Query: 578 PLLIAENGSLLLKKRHIDNLK------ERDYNN----------YGWQVLVQSGVVEYIDT 621
PL I EN LLLKK HI+ L E D + +GW LV G+VEY+D
Sbjct: 530 PLFIVENQQLLLKKEHIEWLSNGCETAEEDQDAGEEAADDGVPFGWSQLVARGIVEYLDA 589
Query: 622 LEEETTMIAM 631
EEET MI M
Sbjct: 590 EEEETVMICM 599
>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
Length = 1252
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 329/712 (46%), Positives = 442/712 (62%), Gaps = 97/712 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD KGLV QQLDS+DEF + ++Q IV+++ + L+ + E P
Sbjct: 23 EDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPII 82
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------TV 112
RY +KF ++YL++PTH E DG+ + P+EARLRNLTYS + DI+ V
Sbjct: 83 KRRYEIKFGRVYLARPTHTEGDGTTVALFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142
Query: 113 VRQGEE----------------------PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
V +GE+ P+ + + FIGK+P+MLRS C L +D
Sbjct: 143 VVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR 210
L NECP D GGYF+INGSEKVLIAQE+ A N V VF K + EIRS +E +R
Sbjct: 203 LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTR 262
Query: 211 PTSTL---WVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEH 267
S+ W + + G K A G A+LPYIKQE+P+ IVFRALG V+D +IL H
Sbjct: 263 LISSFNIKWADT-SLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVSDEEILSH 321
Query: 268 IIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEM 327
I+YD D +M+E++KPS++E VIQ++ AL+FI RGA G T++RR+K+AR+I+QK+
Sbjct: 322 IVYDRTDTQMLELLKPSIEEGAVIQDRETALDFIAKRGANQG-TRDRRLKFARDIMQKDK 380
Query: 328 LPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------- 368
K F GYM+HRLL LGRR+ DDRDH+
Sbjct: 381 T----------LAKPTFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFRIL 430
Query: 369 -------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 421
V Y Q+ ++ DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVS
Sbjct: 431 FLKLTKDVFKYLQRCVESSTDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVS 490
Query: 422 QVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
QVLNR T+AS+LSHLRR N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+
Sbjct: 491 QVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLS 550
Query: 482 LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTL 541
LM Y+SVGS +PI++F+ + +M+ LEE + +ATK+FVNG WVG+H +QL+ +
Sbjct: 551 LMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLVSVV 610
Query: 542 RKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHID 595
++LRR + E+S+IRDIRDRE +I TDAGR+ RPL + EN + L+ R I
Sbjct: 611 QELRRN-GTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDREIS 669
Query: 596 N--LKER--------------DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N +KE+ N YGW+ L+Q GV+EY+D EEET MI
Sbjct: 670 NRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITF 721
>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 1634
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 345/705 (48%), Positives = 443/705 (62%), Gaps = 104/705 (14%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
QE W VI A+FD+KGLVRQQLDSF+EF+ +++Q I++++P+I ++ E+QH E
Sbjct: 22 QEDSWNVITAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAAEE 81
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT-VVRQGEEPV 120
Y++KF Q+YLS+P E+DG + P EARLRNLTY APLYVD+TKT R GE V
Sbjct: 82 KEYIIKFGQVYLSRPQITEQDGESVVLFPKEARLRNLTYCAPLYVDVTKTEYTRVGENEV 141
Query: 121 ---TTQHQKSFIGKIPIMLRSTYCLLN-GLTDRDLTELNEC------------------- 157
T +GK+PIML+S C L+ T+++ T L E
Sbjct: 142 EEKTETFSHVHLGKVPIMLKSERCNLHEASTEQEATNLGESYFGAAACLIVGTCPGIAHQ 201
Query: 158 ------PLDP---------------GGYFIINGSEKVLIAQEKMATNTVYVFSM-KDSKY 195
PL P GGYF+INGSEKVLIAQE+MA N VYVF + SKY
Sbjct: 202 LAPPLTPLTPALAAPTRSASSAHPQGGYFVINGSEKVLIAQERMANNHVYVFKKSQPSKY 261
Query: 196 AYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRA 255
+ EIRS +E S+R S++ + M+A+G ++ I +I PYI+ E PI I+FRA
Sbjct: 262 TFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQI----PYIRAEFPIFILFRA 317
Query: 256 LGFVADRDILEHIIYDFD-DPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKER 314
LGFV+DRDILEHI+YD D DP M+E ++ S++EA +Q Q ALN++G RG G +KE
Sbjct: 318 LGFVSDRDILEHIVYDLDADPAMLEALRSSVEEAQEVQTQEEALNYLGKRGTVTGASKE- 376
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------ 368
F ET+K YF+GYMVHRL+L +LGRR DDRDHY
Sbjct: 377 ---------------------FMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANKRLD 415
Query: 369 --------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
+RM AQ+ +D GK+ N+ AI K+IT GL+YSLATGNWG
Sbjct: 416 LGGPLMAGLFRLLFRKLCKELRMQAQRMVDAGKEINVISAINDKVITRGLKYSLATGNWG 475
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
+Q K RAGVSQVL RLT+AS+LSHLRRVNSPIGR+GKLAKPRQLHN+LWG+ CPAET
Sbjct: 476 EQGK-QGIRAGVSQVLARLTYASTLSHLRRVNSPIGREGKLAKPRQLHNSLWGIFCPAET 534
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG AVGLVKN+ALM YI+VG+ P++ LEE++ E L+E+ P+ IA +TK+F+NG W+
Sbjct: 535 PEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTEALDEVTPADIAASTKVFINGVWL 594
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL 588
GI RDP L+ LR +RRQ+ +EV+II D +E+RI TD GR RPL I E+ LL
Sbjct: 595 GIQRDPTALIKNLRAMRRQV-AFSTEVAIIYDGPLKELRIFTDYGRASRPLYICEDNRLL 653
Query: 589 LKKRHIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ K HI L D + Y W LVQ G+VEYID EEETTMIAM
Sbjct: 654 VSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYIDAEEEETTMIAM 698
>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
Length = 1261
Score = 620 bits (1598), Expect = e-174, Method: Compositional matrix adjust.
Identities = 327/720 (45%), Positives = 444/720 (61%), Gaps = 101/720 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQ DSFDEF Q ++Q +V + I L +PP
Sbjct: 23 EDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLD------QPNPPSPPG 76
Query: 63 ------RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---- 112
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY++ITK V
Sbjct: 77 IKIALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAI 136
Query: 113 -----------------VRQGEEPVTT--QHQKS----------------FIGKIPIMLR 137
+ GE P + ++S F+GK+PIM++
Sbjct: 137 EREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAGKSEDWKNMVFVGKLPIMVK 196
Query: 138 STYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYA 196
S C L+ TD L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S +
Sbjct: 197 SKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFT 256
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
Y EIRS LE SR S+L + + +G + + GQ I LP++K ++PI IVFRAL
Sbjct: 257 YTAEIRSALEKGSRLISSLQLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPIAIVFRAL 314
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKER 314
G V+D DIL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +E+
Sbjct: 315 GVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--- 371
R++ A++ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 372 -----------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
Y ++ ++ + FNL + IK +++GL+YSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG WV
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWV 614
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA------ 582
G+H+DP+ L+ + RR+ + EVS++R+IRD+E +I +DAGR+ RP+
Sbjct: 615 GVHQDPKHLVSQVLDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDP 673
Query: 583 ----ENGSLLLKKRHIDNL-------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
E G L+L K ++ L E GW+ L+++G VEY+D EEET+MI M
Sbjct: 674 ETGIEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICM 733
>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
Length = 1261
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 328/720 (45%), Positives = 442/720 (61%), Gaps = 101/720 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQ DSFDEF Q ++Q +V + I L +PP
Sbjct: 23 EDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLD------QPNPPSPPG 76
Query: 63 ------RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--- 113
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY++ITK V
Sbjct: 77 MKIALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAV 136
Query: 114 -----------------------------RQGEEPVTTQHQKS-------FIGKIPIMLR 137
Q E P + KS F+GK+PIM++
Sbjct: 137 EREIPLHEMDDAQQAEYARTRENPTKLVWEQEESPDDDEAGKSEDWKNMVFVGKLPIMVK 196
Query: 138 STYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYA 196
S C L+ TD L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y
Sbjct: 197 SKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYT 256
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
Y EIRS LE SR S+L + + +G + + GQ I LP++K ++PI IVFRAL
Sbjct: 257 YTAEIRSALEKGSRLISSLQLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPIAIVFRAL 314
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKER 314
G V+D DIL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +E+
Sbjct: 315 GVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--- 371
R++ A++ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 372 -----------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
Y ++ ++ + FNL + IK +++GL+YSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG WV
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWV 614
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA------ 582
G+H+DP+ L+ + RR+ + EVS++R+IRD+E +I +DAGR+ RP+
Sbjct: 615 GVHQDPKHLVSQVLDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDP 673
Query: 583 ----ENGSLLLKKRHIDNLKERD-------YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
E G L+L K ++ L + GW+ L+++G VEY+D EEET+MI M
Sbjct: 674 ETGIEKGHLVLSKDLVNKLAKEQAEPPDDPSEKIGWEGLIRAGAVEYLDAEEEETSMICM 733
>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
Length = 1261
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 328/720 (45%), Positives = 442/720 (61%), Gaps = 101/720 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQ DSFDEF Q ++Q +V + I L +PP
Sbjct: 23 EDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLD------QPNPPSPPG 76
Query: 63 ------RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--- 113
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY++ITK V
Sbjct: 77 MKIALRRYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAI 136
Query: 114 -----------------------------RQGEEPVTTQHQKS-------FIGKIPIMLR 137
Q E P + KS F+GK+PIM++
Sbjct: 137 EREVPLHEMDDAQQAEYAKTGENPTKLIWEQEESPEDDEAGKSEDWKNMVFVGKLPIMVK 196
Query: 138 STYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYA 196
S C L+ TD L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S +
Sbjct: 197 SKICHLSRETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFT 256
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
Y EIRS LE SR S+L + + +G + + GQ I LP++K ++PI IVFRAL
Sbjct: 257 YTAEIRSALEKGSRLISSLQLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPIAIVFRAL 314
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKER 314
G V+D DIL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +E+
Sbjct: 315 GVVSDEDILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--- 371
R++ A++ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 372 -----------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
Y ++ ++ + FNL + IK +++GL+YSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFNLAVGIKPATLSNGLKYSLATGNWG 494
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG WV
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWV 614
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA------ 582
G+H+DP+ L+ + RR+ + EVS++R+IRD+E +I +DAGR+ RP+
Sbjct: 615 GVHQDPKHLVSQVLDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDP 673
Query: 583 ----ENGSLLLKKRHIDNL-------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
E G L+L K ++ L E GW+ L+++G VEY+D EEET+MI M
Sbjct: 674 ETGIEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICM 733
>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
Length = 1152
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 329/684 (48%), Positives = 431/684 (63%), Gaps = 93/684 (13%)
Query: 35 VQRIVEDSPQIDLQAEAQHTSTEVETPP-----RYLLKFEQIYLSKPTHWEKDGSPSPMM 89
+Q +VE+ Q+ L Q + + + P RY LKF + L++P+ E DG+ S M+
Sbjct: 1 MQELVEEQGQVTLD---QTIAPDEDDPDPVMVRRYELKFGTVMLARPSMTEGDGATSIML 57
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGE------------------------------EP 119
P EARLRNLTY++PLY+ ITK + E EP
Sbjct: 58 PQEARLRNLTYASPLYLGITKKIAEGRERSLAERDEDDDEPDAKGDEERRARGTYLQWEP 117
Query: 120 VTTQHQKS-----FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
++ FIGK+PIML+S YC+L L + L NECP D GGYFIINGSEKVL
Sbjct: 118 KALPEDEADEENIFIGKMPIMLKSKYCILKDLGEHALYNWNECPYDSGGYFIINGSEKVL 177
Query: 175 IAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQE+ A N V VF S Y EIRS +E SR S L + + A+G S K G
Sbjct: 178 IAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFAKGDSS--KGGFG 235
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
I + LPYIK +IPI++VFRALG V+D DIL HI YD +D M+EM+KP ++E FVIQ+
Sbjct: 236 PTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQD 295
Query: 294 QNVALNFIGARGARP-GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
+ VAL+FI RG+ P + E+R++YAR+I+QKE LPH+ S+ ET+KA+FLGYMVH+L
Sbjct: 296 REVALDFISKRGSSPTSMNHEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHKL 355
Query: 353 LLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLE 386
L +LGRR++DDRDH+ + Y Q+ ++ + L
Sbjct: 356 LQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETNRQLYLN 415
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
+ +K +T GL+Y+LATGNWG+QKKA ++AGVSQVLNR T+AS+LSHLRR N+PIGRD
Sbjct: 416 IGVKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRD 475
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ + +ME
Sbjct: 476 GKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEV 535
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
LEE P ++TKIFVNG WVG+HRDP L+ T++ LRR+ ++I EVS++ DIRDRE
Sbjct: 536 LEEFEPQVSPNSTKIFVNGVWVGVHRDPSHLVSTVQSLRRR-NMISHEVSLVWDIRDREF 594
Query: 567 RIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL------------KERDYNNYGW 607
+I TDAGR+CRPL + +N GSL+L K HI L +ER YGW
Sbjct: 595 KIFTDAGRVCRPLFVVDNDPKSENSGSLVLTKEHIHKLEADKEIPADLDPEERRERYYGW 654
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
LV+SGVVEY+D EEET MI M
Sbjct: 655 DGLVKSGVVEYVDAEEEETIMIVM 678
>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 1155
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 332/678 (48%), Positives = 426/678 (62%), Gaps = 91/678 (13%)
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV------------- 112
L E +LSKP+ E DG+ S ++P EARLRNLTYSAPLYV++ K V
Sbjct: 10 LXLEISFLSKPSQTEADGTTSTLLPQEARLRNLTYSAPLYVEMKKMVKESIDDGTTSSSQ 69
Query: 113 -----------VRQGE----------------EPVTTQH-----------QKSFIGKIPI 134
R GE E V +H Q FIGK+PI
Sbjct: 70 LQWYKEGEITKFRNGEIAEPAPIPADFNDDEDEVVEEKHGTKFHSSGAETQTIFIGKVPI 129
Query: 135 MLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSM-KDS 193
ML+S +C L GLT+ +L E+ ECP D GGYFIINGSEKVLIAQE+ A N V VF S
Sbjct: 130 MLKSKFCTLYGLTEDELYEIRECPYDMGGYFIINGSEKVLIAQERSAANIVQVFKKPAPS 189
Query: 194 KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVF 253
++ EIRS LEH SR S++ V + G S+K +G+ I LPYIK +IPI+IVF
Sbjct: 190 PISHVAEIRSALEHGSRLISSIQVKLTRGGASSMKNGGVGRSIKTSLPYIKSDIPIVIVF 249
Query: 254 RALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKE 313
RALG + D DIL+HI YD +D +MMEM+KP ++E F+IQ Q VAL+FIG RG G+ ++
Sbjct: 250 RALGVIEDGDILQHICYDENDWQMMEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRD 309
Query: 314 RRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----- 368
RRI++A++ILQ+E LPH+ ET KAYFLGY+V+RLLL +L RRE DDRDH+
Sbjct: 310 RRIQFAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRL 369
Query: 369 ---------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNW 407
+ Y Q+ I+RG+DFN+ A+K+ IT GL+YSLATGNW
Sbjct: 370 DLAGPLLANLFRILFRKLSKDIYRYMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNW 429
Query: 408 GDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAE 467
G+QKKA +RAGVSQVLNR T+AS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAE
Sbjct: 430 GEQKKAMSSRAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 489
Query: 468 TPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCW 527
TPEG A GLVKNL+LMA ISVG+ PI LEEW +E L + P +AT++F+NG W
Sbjct: 490 TPEGQACGLVKNLSLMAGISVGTSSEPISYLLEEWGLEPLSDYDPQEHKNATRVFLNGNW 549
Query: 528 VGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN--- 584
VG HRDP L+ T+R+LRR I EVS++RDIR+RE +I TDAGR+ RPL I +N
Sbjct: 550 VGTHRDPGMLVDTMRQLRRS-GTISPEVSLVRDIREREFKIFTDAGRVYRPLFIVDNDPD 608
Query: 585 ----GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
G+L + K + +++R+ + + V+ E + W LV +G+
Sbjct: 609 SPRKGNLKITKDDVRKIRDREV-----EEIAPEEDVDEDGNPAEPIRRVYGWDSLVTNGM 663
Query: 641 VEYIDTLEEETTMIAMSP 658
VEY+D EEETT+IAMSP
Sbjct: 664 VEYLDAEEEETTLIAMSP 681
>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1262
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 324/714 (45%), Positives = 440/714 (61%), Gaps = 89/714 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++FD KGLV QQ DSFDEF Q ++Q +V + I L Q + E
Sbjct: 24 EDCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSAAGEKVALR 83
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY++ITK V R E+ +
Sbjct: 84 RYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSRAVEQDIPL 143
Query: 123 QHQKS---------------------------------------FIGKIPIMLRSTYCLL 143
+ F+GK+PIM++S C L
Sbjct: 144 KELDDAQREELKRTGEMPTKLVWELEESAEDDDTGKSEDWKNMVFVGKLPIMVKSKICHL 203
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
+ + L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y Y EIR
Sbjct: 204 SREQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIR 263
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S LE SR S+L + + +G + + GQ I LP++K ++PI IVFRALG V+D
Sbjct: 264 SALEKGSRLISSLSLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDE 321
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRIKYAR 320
DIL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +++R++ A+
Sbjct: 322 DILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRDKRVRVAK 381
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--------- 371
+ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 382 DILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLL 441
Query: 372 -----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
Y ++ ++ + FNL + IK +++GL+YSLATGNWGDQKKA
Sbjct: 442 AKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAM 501
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 502 SSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 561
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG WVG+H+DP
Sbjct: 562 GLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGVHQDP 621
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA----------EN 584
+ L+ + RR+ + EVS++R+IRD+E +I +DAGR+ RP+ E
Sbjct: 622 KHLVSQVLDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGIEK 680
Query: 585 GSLLLKKRHIDNLK-------ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K ++ L E GW+ L+++G VEY+D EEET+MI M
Sbjct: 681 GHLVLTKELVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICM 734
>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
CQMa 102]
Length = 1263
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 324/714 (45%), Positives = 439/714 (61%), Gaps = 89/714 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++FD KGLV QQ DSFDEF Q ++Q +V + I L Q + E
Sbjct: 25 EDCWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSAAGEKVALR 84
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY++ITK V R E+ +
Sbjct: 85 RYEIKFGTVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYINITKKVSRAVEQDIPL 144
Query: 123 QHQKS---------------------------------------FIGKIPIMLRSTYCLL 143
+ F+GK+PIM++S C L
Sbjct: 145 KELDDAQREELKRTGEMPTKLVWEVEESAEDDDTGKSEDWKNMVFVGKLPIMVKSKICHL 204
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
+ + L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y Y EIR
Sbjct: 205 SREQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIR 264
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S LE SR S+L + + +G + + GQ I LP++K ++PI IVFRALG V+D
Sbjct: 265 SALEKGSRLISSLTLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDE 322
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRIKYAR 320
DIL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +++R++ A+
Sbjct: 323 DILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRDKRVRVAK 382
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--------- 371
+ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 383 DILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLL 442
Query: 372 -----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
Y ++ ++ + FNL + IK +++GL+YSLATGNWGDQKKA
Sbjct: 443 AKLFRGIIRRMNTELSNYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAM 502
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 503 SSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 562
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG WVG+H+DP
Sbjct: 563 GLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGVHQDP 622
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA----------EN 584
+ L+ + RR+ + EVS++R+IRD+E +I +DAGR+ RP+ E
Sbjct: 623 KHLVSQVLDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETGIEK 681
Query: 585 GSLLLKKRHIDNLK-------ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K ++ L E GW+ L+++G VEY+D EEET MI M
Sbjct: 682 GHLVLTKDLVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETAMICM 735
>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
Length = 931
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/497 (59%), Positives = 381/497 (76%), Gaps = 32/497 (6%)
Query: 162 GGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMM 220
GGYF+INGSEKVLIAQE+MATNTVYVFS S + Y EIRS E S+ S L++ MM
Sbjct: 2 GGYFVINGSEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQPEKGSKNASPLFIKMM 61
Query: 221 ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM 280
+ ++ + GQ I A LPYI+ E+PI+IVFRALG VADRD+LEHI YD +D EM+E+
Sbjct: 62 R---ATSERGSSGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLEL 118
Query: 281 VKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK 340
+KPS++E+FVIQ+Q+VAL++IG RG G TK++RIKYA EILQKE+LPHVG + ET+
Sbjct: 119 LKPSIEESFVIQDQDVALDYIGKRGTTVGATKDKRIKYASEILQKELLPHVGTAYKTETR 178
Query: 341 KAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQ 374
K+YF GYM+HRLLLA+L RRELDDRDHY V Y Q
Sbjct: 179 KSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMASLFRLLFKKLTKDVAKYLQ 238
Query: 375 KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLS 434
K I+ ++FNL LA+K+ IT+GL+YSLATGNWGDQKKA Q+RAGVSQVLNR T+ S+LS
Sbjct: 239 KCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTYTSTLS 298
Query: 435 HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP 494
HLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+YISVGS +P
Sbjct: 299 HLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSATP 358
Query: 495 ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE 554
++ FLEEW+MENLEE++ ++IADATK+FVNG W+GIHRDP +L+ +L+++RR +D I E
Sbjct: 359 LIMFLEEWAMENLEELSATSIADATKVFVNGVWIGIHRDPGELINSLKQMRRSVD-ISPE 417
Query: 555 VSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSG 614
VSI+RDIR++E+R++TDAGR CRPL + EN L L + H+ +++ + ++YGWQ ++ G
Sbjct: 418 VSIVRDIREKELRMYTDAGRCCRPLFLVENQQLKLTRDHVLRIQDTE-DDYGWQNMIADG 476
Query: 615 VVEYIDTLEEETTMIAM 631
+VEY+D EEET MI M
Sbjct: 477 IVEYVDADEEETAMICM 493
>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
206040]
Length = 1261
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 325/720 (45%), Positives = 442/720 (61%), Gaps = 101/720 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQ DSFDEF Q ++Q +V + I L +PP
Sbjct: 23 EDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLD------QPNPPSPPG 76
Query: 63 ------RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---- 112
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY+ ITK V
Sbjct: 77 RTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSAAV 136
Query: 113 -----------------VRQGEEPVTTQHQKS------------------FIGKIPIMLR 137
R GE P + ++ F+GK+PIM++
Sbjct: 137 EREVPLHEMDDAQQEQYARTGENPTKLEWEEEENGEDDNLGKSDDWKDMVFVGKLPIMVK 196
Query: 138 STYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYA 196
S C L+ D L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y
Sbjct: 197 SKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSAYT 256
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
Y EIRS LE SR S++ + + +G + + GQ I LP++K ++P+ IVFRAL
Sbjct: 257 YTAEIRSALEKGSRLISSMMLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPVAIVFRAL 314
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKER 314
G V+D DIL HI YD +D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +E+
Sbjct: 315 GVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--- 371
R++ A++ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 372 -----------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
Y ++ ++ + FNL + IK +++GL+YSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG WV
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWV 614
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE----- 583
GIH+DP+ L+ + RR+ + EVS+IR+IRD+E +I +DAGR+ RP+ +
Sbjct: 615 GIHQDPKHLVNQVLDTRRK-SYLQYEVSLIREIRDQEFKIFSDAGRVMRPVFTVQQEDDP 673
Query: 584 -----NGSLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K ++ L + GW+ L+++G VEY+D EEET+MI M
Sbjct: 674 ETGINKGHLVLTKDLVNRLAKEQAEPPEDPSMKLGWEGLIRAGAVEYLDAEEEETSMICM 733
>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
gattii WM276]
Length = 1193
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 325/678 (47%), Positives = 431/678 (63%), Gaps = 84/678 (12%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W VIN++F+EKGLVRQQL+SF+EFI+ ++Q IV+D ++ L Q+T +
Sbjct: 51 QEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETR 110
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQG-EEPV 120
RY + F QIYL++ H E DG + + P EARLRNLTYSAPLYVDI K T+ G ++PV
Sbjct: 111 RYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPV 170
Query: 121 ---------------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ + +K+ IGK+P+M+RS +CLL+GL D E+ ECP D GGYF
Sbjct: 171 EADWQPAVGDDGEVESAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYF 230
Query: 166 IINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
II+GSEKVLIAQE+MATN V+VF +++ Y EI S E R + V M AR
Sbjct: 231 IISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYARA- 289
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
G I LPY K +IP+++VFRALG V DRD+L H+ + +D ++EM++PS
Sbjct: 290 ----SGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHVCFGAEDEALLEMLQPS 345
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E+F +Q+++ AL+FIG RG + +R + A +IL KE LPHV ++ E+KKAYF
Sbjct: 346 IEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYF 405
Query: 345 LGYMVHRLLLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLAT 404
LGYM +++ K+F L +AI+ +TDGL+Y+LAT
Sbjct: 406 LGYMC---------------------------VEQNKEFALNMAIRPNTVTDGLKYALAT 438
Query: 405 GNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMIC 464
GNWG K RAGVSQVLNR TFAS+LSHLRR N+PIGRD K AKPRQLHNT WGM+C
Sbjct: 439 GNWG---KRDNTRAGVSQVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVC 495
Query: 465 PAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI--APSAIADATKIF 522
PAETPEG+A GLVKNLALM+YISVGS +P++EFLEEW +E+L E AP+A TK+F
Sbjct: 496 PAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDLSEYQDAPTA----TKVF 551
Query: 523 VNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA 582
VNG W+GIHRD L L ++RR + EVSI+RDIR+RE+R++TDAGR+CRPL I
Sbjct: 552 VNGVWMGIHRDAPTLHNNLLQMRRGGQLKY-EVSIVRDIRERELRLYTDAGRVCRPLFIV 610
Query: 583 E--NGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
+ +L LK+ HID ID L +E + W L+ G+
Sbjct: 611 DQPTQTLRLKRDHIDR----------------------IDQLADEGLLSGAWDKLLSEGI 648
Query: 641 VEYIDTLEEETTMIAMSP 658
VEY+D EEET +IAM+P
Sbjct: 649 VEYVDAAEEETILIAMTP 666
>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 322/713 (45%), Positives = 437/713 (61%), Gaps = 88/713 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI+++F+ KGLV QQ DSFDEF Q ++Q +V + I L + V
Sbjct: 24 EDCWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLVNEYSVISLDQPNPPSPPGVSIALR 83
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV--------- 113
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY+ ITK V
Sbjct: 84 RYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSVAVEKEVPL 143
Query: 114 ------------RQGEEPVT-----------------TQHQKSFIGKIPIMLRSTYCLLN 144
R GE P + F+GK+PIM++S C L+
Sbjct: 144 HEMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADDSWKDMVFVGKLPIMVKSKICHLS 203
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
D +L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y Y EIRS
Sbjct: 204 SEHDDNLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRS 263
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
LE SR S++ + + +G + + GQ I LP++K ++P+ IVFRALG V+D D
Sbjct: 264 ALEKGSRLISSMMLKLYGKGDSA--RGGFGQTIHTTLPFVKADLPVAIVFRALGVVSDED 321
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRIKYARE 321
IL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +E+R++ A++
Sbjct: 322 ILNHICYDRTDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREKRVRVAKD 381
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------- 371
ILQKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 382 ILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLA 441
Query: 372 ----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
Y ++ ++ + FNL + IK +++GL+YSLATGNWGDQKKA
Sbjct: 442 KLFRGIVRRMNTELSNYLKRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAAS 501
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A G
Sbjct: 502 STAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACG 561
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG W G+H DP+
Sbjct: 562 LVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWCGVHSDPK 621
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE----------NG 585
L+ + RR+ + EVS++RDIRDRE ++ +DAGR+ RP+ + G
Sbjct: 622 HLVSQVLDTRRK-SYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHESGIAKG 680
Query: 586 SLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+L+L K ++ L + GW+ L+++G +EY+D EEET MI M
Sbjct: 681 ALVLTKDLVNKLAKEQAEPPEDPSMKIGWEGLIRAGTIEYLDAEEEETAMICM 733
>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
Length = 1278
Score = 616 bits (1589), Expect = e-173, Method: Compositional matrix adjust.
Identities = 327/716 (45%), Positives = 444/716 (62%), Gaps = 94/716 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQ----AEAQHTSTEVE 59
E CW VI+AYFD KGLV QQ+DSFDEF ++Q +V++ + L + Q +
Sbjct: 42 EDCWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLVDEYADLTLDHPNPGDDQGRDIALR 101
Query: 60 TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--------- 110
RY + F + +SKPT E G + ++P E R RNLTYSAP+Y ++K
Sbjct: 102 ---RYDIHFGNVMISKPTLTEISGETTSLLPYECRDRNLTYSAPMYCKVSKRARVAINEP 158
Query: 111 -----------TVVRQ-GEEPVTTQHQKS-------------------FIGKIPIMLRST 139
++R+ GE P+T + ++ F+GK+P+M++S
Sbjct: 159 VPLNELDDEQHELMRETGEHPMTIRWEEEESDMPGEGSKGENDRGDLIFLGKLPVMVKSQ 218
Query: 140 YCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYK 198
C L G D L LNECP D GGYFIINGSEKVLIAQE+ A N V VF +Y+
Sbjct: 219 ICHLYGEDDESLFVLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQ 278
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 258
EIRS LE SR S+L + + + S +K + + LPY+++++ + IVFRALG
Sbjct: 279 AEIRSALEKGSRLISSLQMKLHTKA--SNEKGRLANTVSVTLPYVREDVSLAIVFRALGI 336
Query: 259 VADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIK 317
V+D DIL HI YD D +M+E ++P ++EAF IQ++ +AL+FIG RG G + RI+
Sbjct: 337 VSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNGNMGQNRMNRIR 396
Query: 318 YAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------ 371
A+++LQKEMLPH+ ++ CET+KA+FLGYMV++LL +LGRR+ DDRDH+ +
Sbjct: 397 AAKDLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLQCALGRRDTDDRDHFGKKRLDLAG 456
Query: 372 --------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQK 411
Y ++ +D K F L L IK +T+ L+YSLATGNWGDQK
Sbjct: 457 PLLAKLFRGVVRRMTQDLMGYMKRCLDTNKHFTLALGIKANTLTNALKYSLATGNWGDQK 516
Query: 412 KAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
KA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG
Sbjct: 517 KAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 576
Query: 472 AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIH 531
A GLVKNL+LM Y+SVG+ PI++F+ M+ LEE P +ATK+FVNG WVG+H
Sbjct: 577 QACGLVKNLSLMCYVSVGTPADPIVDFMTARGMDVLEEYEPLRAPNATKVFVNGTWVGVH 636
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI---------- 581
DP+QL+ ++ LRR+ ++I EVS++RDIR+RE +I +DAGR+ RPL
Sbjct: 637 NDPKQLVTLVQDLRRK-NVISFEVSLVRDIREREFKIFSDAGRVMRPLFTVEQEEKGNHG 695
Query: 582 AENGSLLLKKRHIDNL-KERDYNNY-----GWQVLVQSGVVEYIDTLEEETTMIAM 631
E G L+L K HI L ++++ Y GWQ L++SG +EY+D EEETTMI M
Sbjct: 696 VEKGQLILNKDHIARLQRDKELGKYHPDYWGWQGLLKSGAIEYLDAEEEETTMICM 751
>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
Length = 1287
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 332/718 (46%), Positives = 441/718 (61%), Gaps = 95/718 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E W VI++YFD KGLV QQ+DSF+EF +VQ ++++ + L + E
Sbjct: 46 EDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGREIILR 105
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY + F +I +S+PT E G ++P E R RNLTYSAP+Y +TK
Sbjct: 106 RYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPL 165
Query: 112 ----------VVRQGEEP--------------------VTTQHQKS--FIGKIPIMLRST 139
+ R GE P + ++ K F+GKIPIM++S
Sbjct: 166 NQLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVKSK 225
Query: 140 YCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYK 198
C L D L LNECP D GGYFIINGSEKVLIAQE+ A N V VF +Y+
Sbjct: 226 ICHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQ 285
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 258
EIRS LE SR S+L + + + Q+ K + + LPY+K+E+ + IVFRALG
Sbjct: 286 AEIRSALEKGSRLISSLQMRLHTKADQN--KGRLANTVSVTLPYVKEEVSLAIVFRALGV 343
Query: 259 VADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIK 317
V+D DIL HI YD D +M+E ++P ++EAF IQ++ VAL++IG RG G+ + RIK
Sbjct: 344 VSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVALDYIGKRGNGSTGINRNGRIK 403
Query: 318 YAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------ 371
A+E+LQKE+LPH+ ++ CET+KA+FLGYMVH+LL LGRR+ DDRDH+ +
Sbjct: 404 AAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463
Query: 372 --------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQK 411
Y ++ +D K F+L L IK +T+GL+YSLATGNWGDQK
Sbjct: 464 PLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQK 523
Query: 412 KAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
KA + AGVSQVLNR TF+S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG
Sbjct: 524 KAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 583
Query: 472 AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIH 531
A GLVKNL+LM ++SVG+ PI+EF+ +ME LEE P +ATK+FVNG WVG+H
Sbjct: 584 QACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVH 643
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI---------- 581
+DP+ L+ ++ LRR+ +II EVS++RDIRDRE +I +DAGR+ RPL +
Sbjct: 644 QDPKHLVTLVQNLRRK-NIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESG 702
Query: 582 AENGSLLLKKRHIDNLKE--------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
E G L+L K HI L++ DY +GWQ L++SG +EY+D EEET MI M
Sbjct: 703 VEKGQLILTKEHIRRLEQDKELGKYHEDY--FGWQGLLESGAIEYLDAEEEETAMICM 758
>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1286
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 337/718 (46%), Positives = 441/718 (61%), Gaps = 94/718 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI+AYFD+ GLV QQ+DSF+EF Q ++Q +V + + L +
Sbjct: 46 EDCWEVISAYFDKNGLVSQQIDSFNEFTQSTIQSLVNEYAHLTLDHPNPGDDEGRDIAMR 105
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY + F+ + LSKPT E G + ++P E R RNLTYSAP+Y +TK
Sbjct: 106 RYDIHFQDVLLSKPTLTETTGETTFLLPYECRDRNLTYSAPMYCKVTKRARIAINEPIPY 165
Query: 112 ----------VVRQGEEPVTTQHQKS-----------------------FIGKIPIMLRS 138
+ + GE P T + ++ F+GK+PIM++S
Sbjct: 166 HELDDEQREHLAKTGEHPTTIRWEEEDTGPREAPRDGPLKGDKDKADYIFLGKLPIMVKS 225
Query: 139 TYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAY 197
C L G D L LNECP D GGYFIINGSEKVLIAQE+ A N V +F AY
Sbjct: 226 KVCHLYGEDDDSLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQIFKKPPGGSVAY 285
Query: 198 KTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALG 257
EIRS LE SR S+L + + + S +K + + LPY++++I + IVFRALG
Sbjct: 286 VAEIRSALEKGSRLISSLQMKLHTKA--SPEKGRLANTVSVTLPYVREDISLAIVFRALG 343
Query: 258 FVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRI 316
V+D DIL HI YD D +M+E ++P ++EAF IQ++ VAL+FIG RG G + RI
Sbjct: 344 VVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREVALDFIGKRGNGNAGQNRVNRI 403
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----- 371
+ A+++LQKEMLPH+ S+ CET+KA+FLGYMVH+LL +LGRR+ DDRDH+ +
Sbjct: 404 RAAKDLLQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDPDDRDHFGKKRLDLA 463
Query: 372 ---------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQ 410
Y ++ ID K+F+L L IK +T+ L+YSLATGNWG+Q
Sbjct: 464 GPLLAKLFRGVIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNALKYSLATGNWGEQ 523
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
KKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPE
Sbjct: 524 KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 583
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 530
G A GLVKNL+LM Y+SVG+ PI+EF+ +ME LEE P +ATK+FVNG WVG+
Sbjct: 584 GQACGLVKNLSLMCYVSVGTPAEPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGV 643
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI--------- 581
H+DP+ L+ ++ LRR+ +II EVS++RDIRDRE +I +DAGR+ RPL
Sbjct: 644 HQDPKHLVSLVQGLRRK-NIINFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDNGEN 702
Query: 582 -AENGSLLLKKRHIDNLKERDY-------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
E G LLLKK HI L ERD + +GW L++SG VEY+D EEET MI M
Sbjct: 703 GVEKGQLLLKKEHIARL-ERDKELGKYHPDYWGWDGLLKSGAVEYLDAEEEETAMICM 759
>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans
var. neoformans JEC21]
gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1193
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 326/678 (48%), Positives = 430/678 (63%), Gaps = 84/678 (12%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE W VIN++F+EKGLVRQQL+SF+EFI+ ++Q IV+D ++ L Q+T +
Sbjct: 51 QEDYWTVINSFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETR 110
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQG-EEPV 120
RY + F QIYL++ H E DG + + P EARLRNLTYSAPLYVDI K T+ G ++PV
Sbjct: 111 RYEISFGQIYLARVNHTEMDGRTNMLFPQEARLRNLTYSAPLYVDIKKRTLTASGVDDPV 170
Query: 121 TT---------------QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ +K+ IGK+P+M+RS +CLL+GL D E+ ECP D GGYF
Sbjct: 171 EADWQPAVGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYF 230
Query: 166 IINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
II+GSEKVLIAQE+MATN V+VF +++ Y EI S E R + V M AR
Sbjct: 231 IISGSEKVLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMYARA- 289
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
G I LPY K +IP+++VFRALG V DRD+L HI + +D ++EM++PS
Sbjct: 290 ----SGTTGGVIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPS 345
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E+F +Q+++ AL+FIG RG + +R + A +IL KE LPHV ++ E+KKAYF
Sbjct: 346 IEESFAVQDRDTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYF 405
Query: 345 LGYMVHRLLLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLAT 404
LGYM +++ K+F L +AI+ ITDGL+Y+LAT
Sbjct: 406 LGYMC---------------------------VEQNKEFALNMAIRPNTITDGLKYALAT 438
Query: 405 GNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMIC 464
GNWG K RAGVSQVLNR TFAS+LSHLRR N+PIGRD K AKPRQLHNT WGM+C
Sbjct: 439 GNWG---KRDNTRAGVSQVLNRYTFASTLSHLRRTNTPIGRDSKAAKPRQLHNTHWGMVC 495
Query: 465 PAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI--APSAIADATKIF 522
PAETPEG+A GLVKNLALM+YISVGS +P++EFLEEW +E+L E AP+A TK+F
Sbjct: 496 PAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEWGLEDLSEYQDAPTA----TKVF 551
Query: 523 VNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA 582
VNG W+GIHRD L L ++RR + EVSI+RDIR+RE+R++TDAGR+CRPL I
Sbjct: 552 VNGVWMGIHRDAPTLHNNLLQMRRGGQLKY-EVSIVRDIRERELRLYTDAGRVCRPLFIV 610
Query: 583 E--NGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
+ +L LK+ HID ID + +E + W L+ G+
Sbjct: 611 DQPTQTLRLKRDHIDR----------------------IDQMADEGLLSGAWDKLLSEGI 648
Query: 641 VEYIDTLEEETTMIAMSP 658
VEY+D EEET +IAM+P
Sbjct: 649 VEYVDAAEEETILIAMTP 666
>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
Length = 1261
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 323/720 (44%), Positives = 442/720 (61%), Gaps = 101/720 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQ DSFDEF Q ++Q +V + I L +PP
Sbjct: 23 EDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLD------QPNPPSPPG 76
Query: 63 ------RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---- 112
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY+ ITK V
Sbjct: 77 RTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSAAV 136
Query: 113 -----------------VRQGEEPVTTQHQKS------------------FIGKIPIMLR 137
R GE P + ++ F+GK+PIM++
Sbjct: 137 EREVPLHEMDDAQQEEYARTGEHPTKLEWEEEENGEDDNVGKSDDWKDMVFVGKLPIMVK 196
Query: 138 STYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYA 196
S C L+ D L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y
Sbjct: 197 SKICHLSREQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSAYT 256
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
Y EIRS LE SR S++ + + +G + + GQ I LP++K ++P+ IVFRAL
Sbjct: 257 YTAEIRSALEKGSRLISSMMLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPVAIVFRAL 314
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKER 314
G V+D DIL HI YD +D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +E+
Sbjct: 315 GVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGREK 374
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--- 371
R++ A++ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 375 RVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 434
Query: 372 -----------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
Y ++ ++ + FNL + IK +++GL+YSLATGNWG
Sbjct: 435 LAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWG 494
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAET
Sbjct: 495 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 554
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG WV
Sbjct: 555 PEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWV 614
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE----- 583
G+H+DP+ L+ + RR+ + EVS++R+IRD+E +I +DAGR+ RP+ +
Sbjct: 615 GVHQDPKHLVNQVLDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDP 673
Query: 584 -----NGSLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K ++ L + GW+ L+++G VEY+D EEET+MI M
Sbjct: 674 ETGINKGHLVLTKELVNRLAKEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEETSMICM 733
>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2508]
gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
2509]
Length = 1287
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 331/716 (46%), Positives = 441/716 (61%), Gaps = 91/716 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E W VI++YFD KGLV QQ+DSF+EF +VQ ++++ + L + E
Sbjct: 46 EDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGREIILR 105
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY + F +I +S+PT E G ++P E R RNLTYSAP+Y +TK
Sbjct: 106 RYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPL 165
Query: 112 ----------VVRQGEEP--------------------VTTQHQKS--FIGKIPIMLRST 139
+ R GE P + ++ K F+GKIPIM++S
Sbjct: 166 NQLTDDEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVKSK 225
Query: 140 YCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYK 198
C L D L LNECP D GGYFIINGSEKVLIAQE+ A N V VF +Y+
Sbjct: 226 ICHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQ 285
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 258
EIRS LE SR S+L + + + Q+ K + + LPY+K+E+ + IVFRALG
Sbjct: 286 AEIRSALEKGSRLISSLQMRLHTKADQN--KGRLANTVSVTLPYVKEEVSLAIVFRALGV 343
Query: 259 VADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIK 317
V+D DIL HI YD D +M+E ++P ++EAF IQ++ VAL++IG RG G+ + RIK
Sbjct: 344 VSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVALDYIGKRGNGSTGINRNGRIK 403
Query: 318 YAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------ 371
A+E+LQKE+LPH+ ++ CET+KA+FLGYMVH+LL LGRR+ DDRDH+ +
Sbjct: 404 AAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463
Query: 372 --------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQK 411
Y ++ +D K F+L L IK +T+GL+YSLATGNWGDQK
Sbjct: 464 PLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQK 523
Query: 412 KAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
KA + AGVSQVLNR TF+S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG
Sbjct: 524 KAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 583
Query: 472 AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIH 531
A GLVKNL+LM ++SVG+ PI+EF+ +ME LEE P +ATK+FVNG WVG+H
Sbjct: 584 QACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVH 643
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI---------- 581
+DP+ L+ ++ LRR+ +II EVS++RDIRDRE +I +DAGR+ RPL +
Sbjct: 644 QDPKHLVTLVQNLRRK-NIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESG 702
Query: 582 AENGSLLLKKRHIDNL-KERDYNNY-----GWQVLVQSGVVEYIDTLEEETTMIAM 631
E G L+L K HI L ++++ Y GWQ L++SG +EY+D EEET MI M
Sbjct: 703 VEKGQLILTKEHIRRLEQDKELGKYHEEYFGWQGLLESGAIEYLDAEEEETAMICM 758
>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
10762]
Length = 1254
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 331/731 (45%), Positives = 455/731 (62%), Gaps = 94/731 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI----DLQAEAQ-HTSTEV 58
E CW VI ++F+ KGLV QQLDSFDEF ++Q I+ ++ I +L E H +T V
Sbjct: 17 EDCWTVIQSFFESKGLVSQQLDSFDEFAATTMQEIISETETIAVDRNLSPEDDGHGATIV 76
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
+ R+ ++F + +S+ E DG + P+EARLRNLTY++P+Y+++ K V+ E+
Sbjct: 77 KK--RWQIEFGKATISQAAMTEGDGVTRALFPHEARLRNLTYASPIYLEMKKRVMIAKEK 134
Query: 119 PVTT-------------------------------------QHQKSFIGKIPIMLRSTYC 141
P + K FIGK+P+ML+S C
Sbjct: 135 PAGSYWDEEQERWEAPEEWDGQEYETFWQRDPEDEASPDADTATKVFIGKLPVMLKSKIC 194
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEI 201
L ++++L ECP D GGYFIINGSEKVLIAQE+ A N V VF + S EI
Sbjct: 195 TLRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKRGSPTPVVAEI 254
Query: 202 RSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVAD 261
RS +E SR ST+ V + R + +G+ + A LPYIK +IP++ VFRALG V+D
Sbjct: 255 RSAIEKGSRLISTMMVKLYER----TSGTNLGKTVKATLPYIKSDIPLVAVFRALGIVSD 310
Query: 262 RDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYARE 321
DIL HI DD +M+EM+KP L+EA IQE+ AL+FIG RG G T+E+RIK+AR+
Sbjct: 311 EDILLHICKR-DDTQMLEMLKPCLEEAAAIQEREQALDFIGRRGNFAG-TREKRIKFARD 368
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------- 368
++QKE LPH+ + ET+KA+FLGYMV+RLL LGR E DDRDH+
Sbjct: 369 VMQKEFLPHISQEEGSETRKAFFLGYMVNRLLQVQLGRVEEDDRDHFGKKRLDLAGPLMA 428
Query: 369 -------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQ 415
+R Y + +++G++FN+ LA+K+ IIT GLRYSLATGNWGDQKKA
Sbjct: 429 QVFRLKFSQLVKDIRNYLHRCVEQGREFNINLAVKSNIITSGLRYSLATGNWGDQKKAAS 488
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A G
Sbjct: 489 SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 548
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALM Y+SVG+ +P++E++ ME LEE +ATK+F+NG WVG+H
Sbjct: 549 LVKNLALMCYVSVGTPGTPLIEYMRHRGMELLEEYDAVMNPNATKVFLNGTWVGVHSSGH 608
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLL 588
QL L++LRR+ ++I EV+IIRD+R+REI++ TDAGR+ RPL + +N G+L+
Sbjct: 609 QLTEALKELRRK-EVIGFEVTIIRDVREREIKVFTDAGRVMRPLFVIDNNPNSPNRGNLV 667
Query: 589 LKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM-WQVLVQSGVVEYIDTL 647
L + ++ L Q ++ G +E E++ + W LV++GV+EY+D
Sbjct: 668 LSREQVEKLSND-------QKII--GSLEGQSVSEQQKAELTFGWHGLVKNGVIEYLDAE 718
Query: 648 EEETTMIAMSP 658
EEET MI M+P
Sbjct: 719 EEETAMIMMTP 729
>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei
QM6a]
Length = 1262
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/721 (44%), Positives = 442/721 (61%), Gaps = 102/721 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQ DSFDEF Q ++Q +V + I L +PP
Sbjct: 23 EDCWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLD------QPNPPSPPG 76
Query: 63 ------RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---- 112
RY +KF + +S+PT E DG+ + ++P E R RNLTY++PLY+ ITK +
Sbjct: 77 RTIALRRYEIKFGSVMVSRPTISETDGTVTSLLPYECRDRNLTYASPLYIKITKKLSAAV 136
Query: 113 -----------------VRQGEEPVTTQHQKS-------------------FIGKIPIML 136
R GE P + ++ F+GK+PIM+
Sbjct: 137 EKEIPLHEMDDAQQEEYARTGEAPTKLEWEEEEAGEDDHNIGKSEDWKDMVFVGKLPIMV 196
Query: 137 RSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKY 195
+S C L+ TD L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y
Sbjct: 197 KSKICHLSRETDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSAY 256
Query: 196 AYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRA 255
Y EIRS LE SR S++ + + +G + + GQ I LP++K ++P+ IVFRA
Sbjct: 257 TYTAEIRSALEKGSRLISSMMLKLYGKGDSA--RGGFGQTIHTTLPFVKSDLPVAIVFRA 314
Query: 256 LGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKE 313
LG V+D DIL HI YD +D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +E
Sbjct: 315 LGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRE 374
Query: 314 RRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM-- 371
+R++ A++ILQKE LPH+ ++ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 375 KRVRVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRL 434
Query: 372 ------------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNW 407
Y ++ ++ + FNL + IK +++GL+YSLATGNW
Sbjct: 435 DLAGPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNW 494
Query: 408 GDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAE 467
GDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAE
Sbjct: 495 GDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 554
Query: 468 TPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCW 527
TPEG A GLVKNL+LM Y+SVGS P++EF+ ME +EE P ATKIFVNG W
Sbjct: 555 TPEGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVW 614
Query: 528 VGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE---- 583
VGIH+DP+ L+ + RR+ + EVS++R+IRD+E +I +DAGR+ RP+ +
Sbjct: 615 VGIHQDPKHLVQQVVDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQDEE 673
Query: 584 ------NGSLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIA 630
G L+L K ++ L + GW+ L+++G VEY+D EEET MI
Sbjct: 674 SDTGIPKGHLVLTKDLVNKLAQEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEETAMIC 733
Query: 631 M 631
M
Sbjct: 734 M 734
>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
Length = 1282
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 327/714 (45%), Positives = 443/714 (62%), Gaps = 89/714 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E CW VI++YFD KGLV QQ+DSFDEF ++Q +V++ + L + +
Sbjct: 45 EDCWEVISSYFDMKGLVSQQIDSFDEFTTTTIQSLVDEYADLTLDHPNPGDDSGRDIAMR 104
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY + F + +SKPT E G + ++P E R RNLTYSAP+Y ++K
Sbjct: 105 RYDIHFGNVMISKPTLTETTGETTVLLPYECRDRNLTYSAPMYCRVSKRARVAVNEEVRL 164
Query: 112 ----------VVRQGEEPVTTQHQKS--------------------FIGKIPIMLRSTYC 141
+ + GE P T + ++ F+GK+P+M++S C
Sbjct: 165 EDMDDDQRAYMAQTGEVPKTIRWEEEDTGPREGIAKGDDDEQGDLIFLGKLPVMVKSQVC 224
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTE 200
L+G D L +LNECP D GGYFIINGSEKVLIAQE+ A N V VF +Y+ E
Sbjct: 225 HLHGEDDESLFQLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAE 284
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
IRS LE SR S+L + + + S K + LPY+++++ + IVFRALG V+
Sbjct: 285 IRSALEKGSRLISSLQMKLHTKA--SPDKGRQANTVSVTLPYVREDVSLAIVFRALGIVS 342
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKYA 319
D DIL HI YD D +M+E ++P ++EAF IQ++ +AL+FIG RG G + RI+ A
Sbjct: 343 DEDILNHICYDRSDTQMLEALRPCIEEAFCIQDREIALDFIGKRGNGNAGQNRSNRIRAA 402
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM-------- 371
+++LQKEMLPH+ ++ CET+KA+FLGYMVH+LL +LGRR+ DDRDH+ +
Sbjct: 403 KDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPL 462
Query: 372 ------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
Y ++ ID K+F+L L IK +T+GL+YSLATGNWGDQKKA
Sbjct: 463 LAKLFRGIIRRMTQDLMSYMKRCIDTNKNFSLALGIKHSTLTNGLKYSLATGNWGDQKKA 522
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 523 MSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQA 582
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNL+LM Y+SVG+ PI+EF+ +ME LEE P +ATK+FVNG WVG+H+D
Sbjct: 583 CGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQD 642
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI----------AE 583
P+ L+ ++ LRR+ ++I EVS++RDIRDRE +I +DAGR+ RPL E
Sbjct: 643 PKHLVSLVQGLRRK-NVISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDNGANGVE 701
Query: 584 NGSLLLKKRHIDNLK-ERDYNNY-----GWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K HI L+ +++ Y GW+ L++SG +EY+D EEET MI M
Sbjct: 702 KGQLILNKEHIQRLEADKELGKYHPDYWGWKGLLRSGAIEYLDAEEEETAMICM 755
>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 298/491 (60%), Positives = 370/491 (75%), Gaps = 30/491 (6%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MA+N +YVF+ S Y+Y EIRS +E SR STL++ M+A+
Sbjct: 1 SEKVLIAQERMASNVIYVFAKSPPSPYSYTAEIRSAVETGSRHASTLYIKMLAKASARAN 60
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+GQ I A LPYI+Q+IPI+IVFRALG V DRDILEHI YDF+D +M+EM+KP +++A
Sbjct: 61 SEIVGQSIKATLPYIRQDIPIVIVFRALGIVPDRDILEHICYDFNDTQMLEMLKPCIEDA 120
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ +AL+FIG RG GVTKE+R++YA EILQKE+LPH+G ETKKAYF GYM
Sbjct: 121 FVIQDKEIALDFIGKRGTTVGVTKEKRMRYAAEILQKELLPHIGTKAHTETKKAYFFGYM 180
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA+L RRE DDRDH+ V QK IDR ++
Sbjct: 181 IHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTSDVSKSLQKCIDRNRE 240
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL +AI+ ITDGL+YSLATGNWG Q K Q+RAGVSQVLNR TFAS+LSHLRR+N+P
Sbjct: 241 FNLNVAIRPNTITDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSHLRRLNTP 300
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALM+Y+SVGS +PI+EFLEEW
Sbjct: 301 IGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPIIEFLEEW 360
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
SMEN+EE+ S I +ATKIFVNG WVG+HRDPE L+ TLR LRR + + +E+SI+RDIR
Sbjct: 361 SMENMEEVHVSHILNATKIFVNGVWVGVHRDPEHLVKTLRDLRRGQN-VNAEISIVRDIR 419
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYN--NYGWQVLVQSGVVEYID 620
+RE+RI+TDAGRICRPL I EN L LKK HI ++E++ +GW L+++G++E+ID
Sbjct: 420 ERELRIYTDAGRICRPLFIVENQKLKLKKSHIALIQEKNETGEGWGWDDLIENGIIEFID 479
Query: 621 TLEEETTMIAM 631
EEETT+I M
Sbjct: 480 AEEEETTLICM 490
>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
Length = 1233
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 332/686 (48%), Positives = 446/686 (65%), Gaps = 66/686 (9%)
Query: 3 QEACWIVINAYFDEKG-LVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEA-----QHTST 56
QE W VI A+FD+KG LVRQQLDSF+ FIQ ++Q +VE + +I L + A Q
Sbjct: 51 QEDVWPVITAFFDQKGGLVRQQLDSFNVFIQQTIQELVEGTSEIMLSSSASYKVGQKRDQ 110
Query: 57 EVETPP-RYLLKFEQIYLSKPT---HWEKDGSPSPMMPNEARLRNLTYSAPLYVDI--TK 110
+ P +Y +KF QIYLS+PT E+ + S + PN+ARLRNLTYS+PLYVDI K
Sbjct: 111 QQNQPQFKYNIKFGQIYLSRPTVDTKSEQIEAYSSVYPNDARLRNLTYSSPLYVDIHEKK 170
Query: 111 TVVRQGEEP--VTTQ---------------HQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
+R G T Q H + +G IPIMLRS YC+L+ + +D+T+
Sbjct: 171 ITLRPGSTANIYTAQVGEEDTDDFIVQSKIHNQIPLGSIPIMLRSVYCMLSEV--QDVTD 228
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
+ ECP D GGYFIING EKV+IAQE+MATN VYVF SK++Y EIRS E R S
Sbjct: 229 VGECPFDSGGYFIINGGEKVIIAQERMATNHVYVFKKAMSKFSYVAEIRSSQEGGYRAPS 288
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
++ M + G KK IG I A +PYI+Q+IPI+I+FRAL AD++I++HIIY+ +
Sbjct: 289 GFFIKMEPKQGN--KKGGIGGLIHATIPYIRQDIPIVILFRALSCQADKEIIKHIIYNLN 346
Query: 274 DPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGV 333
D +MME+++PSL+EA + VAL++IG RG G ++E+R+ +A EILQKEMLPHVG+
Sbjct: 347 DGQMMELLRPSLEEAVAVLSNTVALDYIGKRGNTLGASQEKRMNHAEEILQKEMLPHVGI 406
Query: 334 SDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------------- 368
D +KAYF+GYMVHRLLL +LGRR LDDRDHY
Sbjct: 407 GDTSYDRKAYFIGYMVHRLLLGALGRRPLDDRDHYGNKRLELAGGLLQGLFLQLFKKVVK 466
Query: 369 -VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 427
+ +K I + + ++ A+ + IT GL+YSLATGNWG Q + RAGV+QVLNRL
Sbjct: 467 EMESTLKKSILKSSEIDVAPAVNKRTITKGLQYSLATGNWGVQ-GSRDIRAGVAQVLNRL 525
Query: 428 TFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS 487
T+ S+LSHLRR+N+PI R GK A PRQLHNT WG+ICPAETPEG A GLVKNLALM+YI+
Sbjct: 526 TYTSTLSHLRRLNTPIERSGKQAAPRQLHNTQWGVICPAETPEGGACGLVKNLALMSYIT 585
Query: 488 VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQ 547
VG+ + I + L+E + L E+ S + TK+F+NG W+G+H P++L+ LR LRR
Sbjct: 586 VGTDKTHISKMLDELGINKLHELDESDLNKYTKVFLNGMWMGVHHTPDELVKHLRVLRRT 645
Query: 548 MDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKERDYNNY 605
+ + +VSI+RD+R+RE+RI D+GR RPL I ++ +L +K +H+ L+E N
Sbjct: 646 GAVDM-QVSIVRDVREREVRIWCDSGRCARPLFIVDRDHDTLFIKNQHVQALRE---NTM 701
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L++ G+VE IDT EEE+ MIAM
Sbjct: 702 NWDNLLEQGLVELIDTEEEESIMIAM 727
>gi|6606109|gb|AAF19067.1|AF107795_1 DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum]
Length = 1109
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 320/680 (47%), Positives = 431/680 (63%), Gaps = 87/680 (12%)
Query: 36 QRIVEDSPQIDLQAEAQHTSTEVE--TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEA 93
Q +VE+ Q+ L + E + RY LKF + L++P+ E DG+ S M+P EA
Sbjct: 1 QELVEEQGQVTLDQTVPPSDDEPDPVVLRRYELKFGTVMLARPSMTEGDGATSIMLPQEA 60
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVT-------------------------------- 121
RLRNLTY++PLY+ I+K ++ E ++
Sbjct: 61 RLRNLTYASPLYLGISKKIMEGRERLLSERDEEEEEIEEKGDEERRNRGTYLHWERKPTM 120
Query: 122 ---TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
+ + FIGK+PIML+S YC+L L ++ L NECP D GGYF+INGSEKVLIAQE
Sbjct: 121 EDEAEEENIFIGKMPIMLKSKYCILKDLGEQALYNWNECPYDSGGYFVINGSEKVLIAQE 180
Query: 179 KMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+ A N V VF S Y EIRS +E SR S L + + ++G + K G I
Sbjct: 181 RSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSIKLFSKGDSA--KGGFGPTIR 238
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
+ LPYIK +IPI++VFRALG V+D DIL HI YD +D M+EM+KP ++E FVIQ++ VA
Sbjct: 239 STLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTSMLEMLKPCIEEGFVIQDREVA 298
Query: 298 LNFIGARGARP-GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
L+FI RG+ P + +E+R++YAR+I+QKE LPH+ S+ ET+KA+FLGYMVHRLL +
Sbjct: 299 LDFISKRGSSPMSMNQEKRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCA 358
Query: 357 LGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIK 390
LGRR +DDRDH+ + Y Q+ ++ G+ L + +K
Sbjct: 359 LGRRYVDDRDHFGKKRLDLAGPLLANLFRVLFMRLTKDLYKYVQRCVETGRQLYLNIGVK 418
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
+T GL+Y+LATGNWG+QKKA ++AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+A
Sbjct: 419 ASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIA 478
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
KPRQLHNT WG++CPAETPEG A GLVKNLALM I+VG+ PI++F+ + + E LEE
Sbjct: 479 KPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCCITVGTPSEPIIDFMIQRNREVLEEF 538
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
P ++TK+FVNG WVG+HRDP L+GT++ LRR+ ++I EVS++ DIRDRE +I T
Sbjct: 539 EPQVSPNSTKVFVNGVWVGVHRDPAHLVGTVQSLRRR-NMISHEVSLVWDIRDREFKIFT 597
Query: 571 DAGRICRPLLIAEN-------GSLLLKKRHIDNL------------KERDYNNYGWQVLV 611
DAGR+CRPL + +N GSL+L K HI L +ER ++GW LV
Sbjct: 598 DAGRVCRPLFVVDNDPKSENSGSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLV 657
Query: 612 QSGVVEYIDTLEEETTMIAM 631
+SGV+EY+D EEET MI M
Sbjct: 658 KSGVIEYVDAEEEETIMIVM 677
>gi|258576891|ref|XP_002542627.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237902893|gb|EEP77294.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 884
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 327/695 (47%), Positives = 431/695 (62%), Gaps = 100/695 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI+++F+ KGLV QQLDSFDEFI ++Q +VE+ Q+ L Q + E + P
Sbjct: 23 EDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLD---QTIAPEEDDPDP 79
Query: 63 ----RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
RY LKF + L++P+ E DG+ S M+P EARLRNLTY++PLY+ ITK V E
Sbjct: 80 VLVRRYELKFGTVMLARPSMTEGDGATSIMLPQEARLRNLTYASPLYLGITKKVAEGRER 139
Query: 119 PVTTQ----------------------------------HQKSFIGKIPIMLRSTYCLLN 144
+ + + FIGK+PIML+S YC+L
Sbjct: 140 SLAERDEDEEPEEKGDEERRARGTYLQWAPRALPEDEEGEENIFIGKMPIMLKSKYCILK 199
Query: 145 GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRS 203
L + L NECP D GGYFIINGSEKVLIAQE+ A N V VF S + EIRS
Sbjct: 200 DLGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPFVAEIRS 259
Query: 204 CLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 263
+E SR S L + + A+G S K G I + LPYIK +IPI++VFRALG V+D D
Sbjct: 260 AVEKGSRILSQLSIKLFAKGDSS--KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDED 317
Query: 264 ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARP-GVTKERRIKYAREI 322
IL HI YD +D M+EM+KP ++E FVIQ++ VAL+FI RG+ P + E+R++YAR+I
Sbjct: 318 ILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVALDFISKRGSSPTSMNHEKRVRYARDI 377
Query: 323 LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----------- 371
+QKE LPH+ S+ ET+KA+FLGYMVH+LL +LGRR++DDRDH+ +
Sbjct: 378 IQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 437
Query: 372 ---------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA 416
Y Q+ ++ + L++ +K +T GL+Y+LATGNWG+QKKA +
Sbjct: 438 LFRVLFMRLTKDLYKYVQRCVETNRQLYLKIGVKASTLTGGLKYALATGNWGEQKKAASS 497
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AGVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 498 KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 557
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALM YI+VG+ PI++F+ + +ME LEE P ++TKIFVNG WVG+HRD
Sbjct: 558 VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDASH 617
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
L+ T++ LRR+ ++I EVS++ D+EI DA
Sbjct: 618 LVSTVQSLRRR-NLISHEVSLLE--ADKEIPADLDA------------------------ 650
Query: 597 LKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ER YGW LV+SGVVEY+D EEET MI M
Sbjct: 651 -EERRERYYGWDGLVKSGVVEYVDAEEEETIMIVM 684
>gi|70794982|gb|AAZ08465.1| RNA polymerase II second largest subunit [Spinacia oleracea]
Length = 495
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 310/500 (62%), Positives = 370/500 (74%), Gaps = 40/500 (8%)
Query: 22 QQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEVETPPRYLLKFEQIYLSKPT 77
QQLDSFDEFIQ ++Q IV++S I+++ E+QH S ET Y +KF QIYLSKP
Sbjct: 1 QQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI--YKIKFGQIYLSKPM 58
Query: 78 HWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE--PVTTQHQ--KSFIGKIP 133
E DG + + P ARLRNLTYSAPLYVD+TK V+R+G + +T H+ K FIGK+P
Sbjct: 59 MTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIRKGHDGDELTEAHELPKVFIGKVP 118
Query: 134 IMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD- 192
IMLRS+YC L +++DLTEL ECP D GG FIINGSEKVLIAQEKM+TN VYVF +
Sbjct: 119 IMLRSSYCTLYQNSEKDLTELGECPYDQGGCFIINGSEKVLIAQEKMSTNHVYVFKKRQP 178
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
+K+AY E+RS E +RP ST++V M++R G K + GQ I LPYIK +IPI+IV
Sbjct: 179 NKFAYVAEVRSMAESQNRPPSTMFVRMLSRAGA--KGGSSGQYIRCTLPYIKSDIPIIIV 236
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVT+
Sbjct: 237 FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTR 296
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
E+RIKYAREILQKEMLPHVGV ++CETKKAY+ GY++HRLLL ++GRR DDRDHY
Sbjct: 297 EKRIKYAREILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKR 356
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
VR Y QK +D GKD NL AIK K IT GL+YSLATGN
Sbjct: 357 LDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDSGKDLNLSFAIKAKTITSGLKYSLATGN 416
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPA
Sbjct: 417 WG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPA 475
Query: 467 ETPEGAAVGLVKNLALMAYI 486
ETPEG A GLVKNLALM YI
Sbjct: 476 ETPEGQACGLVKNLALMVYI 495
>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
Length = 884
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 297/489 (60%), Positives = 374/489 (76%), Gaps = 32/489 (6%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MATNTVYVFS S + Y EIRS E S+ S L++ MM S +
Sbjct: 1 SEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQNEKGSKNASPLFIKMMR---ASAE 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ + GQ I A LPYI+ E+PI+IVFRALG VADRD+LEHI YD +D EM+E++KPS++EA
Sbjct: 58 RGSSGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLKPSIEEA 117
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ+Q+VAL+FIG RG G T+ERRIKYA EILQKE+LPHVG + ET+K+YF GYM
Sbjct: 118 FVIQDQDVALDFIGKRGTTVGATRERRIKYASEILQKELLPHVGTAYKTETRKSYFFGYM 177
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA+L RRELDDRDHY V Y QK I+ ++
Sbjct: 178 IHRLLLAALERRELDDRDHYGKKRMDLAGVLMSGLFRLLFKKLTKDVAKYLQKCIESSRE 237
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K+ IT+GL+YSLATGNWGDQKKA QARAGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 238 FNLTLAVKSNTITNGLKYSLATGNWGDQKKAAQARAGVSQVLNRYTFASTLSHLRRCNTP 297
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+YISVGS +P++ FLEEW
Sbjct: 298 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSAATPLIMFLEEW 357
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+MENLEE++ ++IADATK+FVNG W+GIHRDP +L+ +L+++RR +D I EVSI+RDIR
Sbjct: 358 AMENLEELSATSIADATKVFVNGVWIGIHRDPGELINSLKQMRRSVD-ISPEVSIVRDIR 416
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTL 622
++E+R++TDAGR CRPL + EN L L + HI +++ + +++GWQ ++ G+VEY+D
Sbjct: 417 EKELRMYTDAGRCCRPLFLVENQQLRLNREHIMRIQDTE-DDFGWQDMIADGIVEYVDAD 475
Query: 623 EEETTMIAM 631
EEET MI M
Sbjct: 476 EEETAMICM 484
>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris
CM01]
Length = 1261
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 320/714 (44%), Positives = 442/714 (61%), Gaps = 89/714 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++F+ KGLV QQ SFDEF Q ++Q +V + +I L Q T +
Sbjct: 22 EDCWTVISSFFESKGLVSQQTASFDEFTQTTIQDLVSEYSKISLDQPNPPSTDERKISVR 81
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---------V 113
RY ++F I +S+P+ E DG+ + ++P E R RNLTY+AP+Y+ ITK V +
Sbjct: 82 RYEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAVETEIPL 141
Query: 114 RQGEEPVTTQHQKS------------------------------FIGKIPIMLRSTYCLL 143
+ ++ T++ KS F+GK+P+M++S C L
Sbjct: 142 HELDDAQHTEYAKSGELPTRLAWESEDVSEPENANKPDAWKDMVFVGKMPVMVKSKVCHL 201
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
+ D +L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y Y EIR
Sbjct: 202 SREHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIR 261
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S LE SR S++ + + +G + + GQ I LP++K ++P+ IVFRALG V+D
Sbjct: 262 SALEKGSRLISSMMLKLYGKGESA--RGGFGQTIHTTLPFVKSDLPVAIVFRALGVVSDE 319
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRIKYAR 320
DIL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +++RI+ AR
Sbjct: 320 DILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRDKRIRVAR 379
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--------- 371
+ILQKE LPH+ ET+KA+F+GYMVH+LL +LGRRE DDRDH+ +
Sbjct: 380 DILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLL 439
Query: 372 -----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
Y ++ ++ + FNL + IK +++GL+YSLATGNWGDQKKA
Sbjct: 440 AKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGIKPGTLSNGLKYSLATGNWGDQKKAA 499
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 500 NSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 559
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNL+LM Y+SVGS P+++F+ ME +EE P ATKIFVNG WVG+H+DP
Sbjct: 560 GLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGVHQDP 619
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA----------EN 584
+ L+ + RR+ + EVS+IRDIRD+E +I +DAGR+ RP+ E
Sbjct: 620 KHLVDQVFDTRRK-SYLQYEVSLIRDIRDQEFKIFSDAGRVMRPVFTVQQKNDPETGLEK 678
Query: 585 GSLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L L K ++ L + + GW+ L+++G +EY+D EEET+MI M
Sbjct: 679 GQLGLTKDLVNKLAQEQADPPDDSELKMGWEGLIKAGAIEYLDAEEEETSMICM 732
>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/491 (60%), Positives = 369/491 (75%), Gaps = 30/491 (6%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MA+N +YVF+ S Y+Y EIRS +E SR STL++ M+A+
Sbjct: 1 SEKVLIAQERMASNIIYVFAKTPPSPYSYTAEIRSAVESGSRHASTLYIKMLAKASTRAN 60
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+GQ I A LPY++Q+IPI+IVFRALG V DRDILEHI YDF D +M+EM+KP +++A
Sbjct: 61 SEIVGQSIKATLPYVRQDIPIVIVFRALGVVPDRDILEHICYDFRDYQMLEMLKPCIEDA 120
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ +AL+FIG RG GVTKE+RI+YA EILQKE+LPH+G ETKKAYF GYM
Sbjct: 121 FVIQDKEIALDFIGKRGTTVGVTKEKRIRYAAEILQKELLPHIGTRAHTETKKAYFFGYM 180
Query: 349 VHRLLLASLGRRELDDRDHY---------------VRMYAQKF-----------IDRGKD 382
+HRLLLA+L RRE DDRDH+ RM +K IDR ++
Sbjct: 181 IHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTKDVSKTLQMCIDRNRE 240
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL AI+ I+DGL+YSLATGNWG Q K Q+RAGVSQVLNR TFAS+LSHLRR+N+P
Sbjct: 241 FNLNSAIRPNTISDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTFASTLSHLRRLNTP 300
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALM+Y+SVGS +PI+EFLEEW
Sbjct: 301 IGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVGSSSAPIVEFLEEW 360
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+MEN+EE+ S I DATKIFVNG WVGIHRDP+ L+ TLR LRR + + +E+SI+RDIR
Sbjct: 361 TMENMEEVHVSHIIDATKIFVNGVWVGIHRDPDHLVKTLRDLRRSQN-VNAEISIVRDIR 419
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYN--NYGWQVLVQSGVVEYID 620
++E++I+TDAGRICRPL I EN L LKK HI ++ER+ +GW L+++G++E+ID
Sbjct: 420 EKELKIYTDAGRICRPLFIVENQKLKLKKSHIAMIQERNETGQGWGWDDLIENGIIEFID 479
Query: 621 TLEEETTMIAM 631
EEETT+I M
Sbjct: 480 AEEEETTLICM 490
>gi|120561251|gb|ABM27010.1| RNA polymerase II second largest subunit, partial [Basidiobolus
ranarum]
Length = 883
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/491 (60%), Positives = 368/491 (74%), Gaps = 37/491 (7%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MA+NTVYVFS S Y++ EIRS E S+ S L++ M+ARG
Sbjct: 1 SEKVLIAQERMASNTVYVFSKTPPSPYSFTAEIRSVAEKGSKNASPLFLKMLARGDS--- 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
GQ I A LPYI+Q++PI++VFRALG VADRDILEHI YD +D M+E++KP ++EA
Sbjct: 58 ----GQYIRATLPYIRQDVPIVVVFRALGLVADRDILEHICYDQEDYAMLELLKPCIEEA 113
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQEQ+VAL++IG RG G+ K++RIKYA EILQKE LPHV ETKKAYF GYM
Sbjct: 114 FVIQEQHVALDYIGKRGTTVGINKDKRIKYATEILQKEFLPHVATEAHTETKKAYFFGYM 173
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
VHRLLLA+L RR+LDDRDHY V Y QK ID ++
Sbjct: 174 VHRLLLAALERRDLDDRDHYGKKRMDLAGPLLAMLFRMLFRKLTKDVGRYLQKCIDSNRE 233
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K+ IT+GL+YSLATGNWGDQKKA QARAGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 234 FNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTP 293
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+YISVG+ +P++E L +W
Sbjct: 294 IGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYISVGNPSAPVVEVLADW 353
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ME+LE+ + + IADATKIFVNG WVGIHRDP L+ T+R+ RR++D I EVSI+RDIR
Sbjct: 354 AMESLEQFSANNIADATKIFVNGVWVGIHRDPGNLIETMRRFRRRVD-ISPEVSIVRDIR 412
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN--YGWQVLVQSGVVEYID 620
D+EIR +TDAGR+CRPL + EN + L+K H+ L+ R+Y+ +GWQ LV +G+VEY+D
Sbjct: 413 DKEIRFYTDAGRVCRPLYVVENQRITLRKEHVVALQMREYDGEPFGWQDLVVNGIVEYLD 472
Query: 621 TLEEETTMIAM 631
EEE +MI M
Sbjct: 473 AEEEEVSMICM 483
>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
Length = 1202
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 316/675 (46%), Positives = 441/675 (65%), Gaps = 54/675 (8%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETPPRYL 65
W VI+++F GLV QQ++SFD+F+ +Q IV++ P I+++ + Q+ E+E Y
Sbjct: 44 WTVISSFFKTHGLVHQQIESFDDFVTYRMQEIVDEYPPIEIRPQPQYRPEDEIEVNVIYK 103
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV----RQGEEPVT 121
LKF Q+ L++P+ EK+G + P EARLRNLTYS+ +YVDI + + +G+E +
Sbjct: 104 LKFGQLSLNRPSVDEKEGVTKHIWPQEARLRNLTYSSQIYVDIDQEIYIYDEAKGQETLQ 163
Query: 122 --TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
T + + +GKIP+ML+S YC +++ DL ++ ECP D GGYFI+ G E+VLIAQE+
Sbjct: 164 DRTSYPRISLGKIPMMLKSMYCWTRNVSEDDLADIGECPYDQGGYFIVGGGERVLIAQER 223
Query: 180 MATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR--- 235
MA N +YVF K SK+++ EIRS +E+S + TS + M A+ + + IG R
Sbjct: 224 MANNFIYVFKKKQPSKFSWVAEIRSQMEYS-QGTSAFSIKMKAKQATA---NVIGNRFRS 279
Query: 236 ---IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
++A LPYI+ +IP+ I+FRALG VAD+DIL+ I YDFDD +M+ ++KP+L++A
Sbjct: 280 YDQLVATLPYIRTDIPVAILFRALGCVADKDILQRIAYDFDDKQMLNLMKPTLEDALDFT 339
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q+ L+FIG RG G +++RI+YA+++L+KE+LPHVG E+KK YF+GYMVHRL
Sbjct: 340 TQDACLDFIGKRGPTVGAPRDKRIQYAKDLLRKEVLPHVGTELGVESKKCYFIGYMVHRL 399
Query: 353 LLASLGRRELDDRDHYVR--------MYAQKF------------------IDRGKDFNLE 386
LLA LGR DDRDH+ + + A F ID G+ F++
Sbjct: 400 LLAKLGRINQDDRDHFGKKRLDMAGPLMASSFGTLFRKMAKDAKRILQHQIDCGRTFDVA 459
Query: 387 LAIKTKI-ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
AI++ IT GL+Y L TGNWG + R GVSQVLNRLTFAS LSHLRR+N+P+GR
Sbjct: 460 GAIRSASQITQGLQYQLLTGNWGKDRDGKVVRTGVSQVLNRLTFASCLSHLRRLNTPLGR 519
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GK+AKPRQLHNT WGMICPAETPEG AVGLVKNLALM ISVG S I E L E M+
Sbjct: 520 EGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCSISVGGASSTICELLTELGMD 579
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
+L+E+ P I D K+F+NG W+G + + L+ TL RR+ D I E SII++I +E
Sbjct: 580 SLDEVPPEVIKDRVKVFINGTWIGCFDEADNLVNTLLHFRRRCD-ISHETSIIKEIVSKE 638
Query: 566 IRIHTDAGRICRPLLIAENGS-LLLKKRHIDNLKERDY-------NNYGWQVLVQSGVVE 617
++I TDAGR RPLL+ +G+ L LK+ H++ +++ Y N W LV+SGVVE
Sbjct: 639 VKIFTDAGRAMRPLLVVHDGNRLALKRSHVEKIRDGSYINECSSENTSAWNWLVESGVVE 698
Query: 618 YIDTLEEETTMIAMW 632
YID EEE M++M+
Sbjct: 699 YIDCEEEEMCMVSMF 713
>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1278
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 326/717 (45%), Positives = 437/717 (60%), Gaps = 92/717 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI++YFDEKGLV QQ+DS++EF ++Q I+++ + L + S P
Sbjct: 32 EDCWTVISSYFDEKGLVSQQIDSYNEFTTTTIQSIIDEYHTLTLDQQNPQDSGASGRPLR 91
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV------- 113
RY L F I +++PT E DG + ++P E R RNLTY+ PL+V +T+ V
Sbjct: 92 MRRYTLTFGHILVTQPTIKETDGQANTLVPYECRDRNLTYACPLWVKLTRKVEAAVEVDI 151
Query: 114 -------RQGEEPVTTQHQKS------------------------FIGKIPIMLRSTYCL 142
Q EE + T + FIGKIPIML+S C
Sbjct: 152 PEDKLTEEQKEEALATNEHPTTVVWVPEPVEEHSIEKNENMRDMVFIGKIPIMLKSRICY 211
Query: 143 LNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEI 201
L + +L LNECP D GGYFIINGSEKVLIAQE+ A N V VF + KY Y+ EI
Sbjct: 212 LRSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPHKYLYQAEI 271
Query: 202 RSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVAD 261
RS LE SR S+L +++ ++G S + A GQ + LPY+ E+P+ IVFRALG V+D
Sbjct: 272 RSALEKGSRLISSLVMSLTSKGDSS--RGAFGQTLHVTLPYVNGELPLAIVFRALGVVSD 329
Query: 262 RDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGV---TKERRIKY 318
DIL HI+ D D +M+EM++PS++EAF IQ++ VAL+FIG R R G + +R++
Sbjct: 330 EDILNHIVLDKGDVQMLEMLRPSIEEAFCIQDREVALDFIGKRVGRDGQHANNRHQRLRM 389
Query: 319 AREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------- 371
AR+ILQKE LPHV + ET+KA+FLGYMVH++L +LGRR++DDRDH+ +
Sbjct: 390 ARDILQKETLPHVSQEEGQETRKAFFLGYMVHKILQCALGRRDVDDRDHFGKKRLDLAGP 449
Query: 372 -------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
+ ++ ID ++F+L A++ +++GL+YSLATGNWGDQKK
Sbjct: 450 LLAKLFRNLVRRMSNDMMNHLKRCIDSSRNFDLTSALRPNTLSNGLKYSLATGNWGDQKK 509
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG
Sbjct: 510 AASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 569
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM +SVG+ SPI FL ME LEE PS +KIF+NG WVG+ R
Sbjct: 570 ACGLVKNLSLMCMVSVGTPASPIEHFLVSRGMEVLEEFEPSDGMAVSKIFINGTWVGVSR 629
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI----------A 582
+ ++L + LRR+ + + +EVS+I D+R+ E RI +DAGR+ RPL +
Sbjct: 630 NIDELADAVADLRRK-NTVDAEVSLIHDVREGEFRILSDAGRVMRPLFVVNQKDDEMTGT 688
Query: 583 ENGSLLLKKRHIDNLKERDYNN--------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ SL+L K HI L E N YGW+ L GV++ +D +EET MI M
Sbjct: 689 KKSSLVLTKEHIARLHEDKDNQLSQGDEGFYGWEGLKSDGVIDLMDAEQEETAMICM 745
>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
ARSEF 2860]
Length = 1261
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 318/714 (44%), Positives = 438/714 (61%), Gaps = 89/714 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E CW VI+++F+ KGLV QQ SFDEF Q ++Q +V + +I L Q +
Sbjct: 23 EDCWTVISSFFESKGLVSQQTASFDEFTQSTIQDLVSEYSKISLDQPNPPSNDDRKISVR 82
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---------- 112
RY ++F I +S+P+ E DG+ + ++P E R RNLTY+AP+Y+ ITK V
Sbjct: 83 RYEIEFGSIMVSRPSISETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAVETEIPL 142
Query: 113 -----------VRQGE-------------EPVTTQHQKS-----FIGKIPIMLRSTYCLL 143
+ GE EP + + F+GK+P+M++S C L
Sbjct: 143 HELDDAQQTEYAKTGELPTRLAWRSEDAPEPENSNKPDAWKDMVFVGKMPVMVKSKVCHL 202
Query: 144 NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIR 202
+ D +L +NECP D GGYF+INGSEKVLIAQE+ A N V VF + S Y Y EIR
Sbjct: 203 SREHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIR 262
Query: 203 SCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 262
S LE SR S++ + + +G + + GQ I LP++K ++P+ IVFRALG V+D
Sbjct: 263 SALEKGSRLISSMMLKLYGKGESA--RGGFGQTIHTTLPFVKADLPVAIVFRALGVVSDE 320
Query: 263 DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRIKYAR 320
DIL HI YD D +M+EM++P ++EAF +Q++ VAL+FIG RG R G+ +++RI+ AR
Sbjct: 321 DILNHICYDRKDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQAGLGRDKRIRVAR 380
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--------- 371
+ILQKE LPH+ ET+KA+F+GYMVH+LL +LGRRE DDRDH+ +
Sbjct: 381 DILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLL 440
Query: 372 -----------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
Y ++ ++ + FNL + +K +++GL+YSLATGNWGDQKKA
Sbjct: 441 AKLFRGIMRRMHSELANYLRRCVEGNRHFNLAVGVKPGTLSNGLKYSLATGNWGDQKKAM 500
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
+ AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A
Sbjct: 501 SSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQAC 560
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNL+LM Y+SVGS P+++F+ ME +EE P ATKIFVNG WVG+H+DP
Sbjct: 561 GLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGVHQDP 620
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA----------EN 584
+ L + RR+ + EVS++R+IRD+E +I +DAGR+ RP+ E
Sbjct: 621 KHLADQVFDTRRK-SYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQSKNDPETGLEK 679
Query: 585 GSLLLKKRHIDNLKERDYN-------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L L K ++ L + + GW+ L+++G VEY+D EEET+MI M
Sbjct: 680 GQLGLTKDLVNRLAQEQADPPDDPEMKTGWEGLIKAGAVEYLDAEEEETSMICM 733
>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
Y34]
gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
P131]
Length = 1276
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 331/721 (45%), Positives = 443/721 (61%), Gaps = 98/721 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP- 62
E CW VI++YFDEKGLV QQ+DS++EF ++Q IV++ + L + + E P
Sbjct: 29 EDCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIVDEYSVLTL--DNPNPPDTFEGKPI 86
Query: 63 ---RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV------- 112
RY + I +++PT E DG S ++P E R RNLTYS PLYV +TK V
Sbjct: 87 RLRRYEIMLGNILVTQPTVKETDGKVSTLVPYECRDRNLTYSCPLYVKLTKKVNVAVEED 146
Query: 113 --------------VRQGEEPVTTQ----HQKS----------------FIGKIPIMLRS 138
R E P T + KS +IGKIP+M++S
Sbjct: 147 IPLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDEKISGEKMADMIYIGKIPVMVKS 206
Query: 139 TYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAY 197
C L + +L LNECP D GGYFIINGSEKVLIAQE+ A N V VF + +KY Y
Sbjct: 207 RICYLRSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPNKYLY 266
Query: 198 KTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALG 257
+ EIRS LE SR STL + + ++G + + + GQ I LPY ++PI IVFRALG
Sbjct: 267 QAEIRSALEKGSRLVSTLTMKLTSKGDST--RGSFGQTIHLNLPYTSGDLPIAIVFRALG 324
Query: 258 FVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPG---VTKER 314
V+D DIL HI+ D +D +M+EM++PS++EAF IQ++ VAL+FI R + G ++
Sbjct: 325 VVSDEDILNHIVLDKNDTQMLEMLRPSIEEAFCIQDREVALDFIAKRVGKDGGHSNSRHL 384
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVR---- 370
R+K AR+ILQK+ LPH+ ++ CET+KA+FLGYMVH++L +LGRR++DDRDH+ +
Sbjct: 385 RLKVARDILQKDTLPHISQAEGCETRKAFFLGYMVHKILQCALGRRDVDDRDHFGKKRLD 444
Query: 371 ----MYAQKF------------------IDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
+ A+ F ID G+DF+L ++K +T+GL+YSLATGNWG
Sbjct: 445 LAGPLLAKLFRGIIRKLTNDMMGGLRRCIDAGRDFDLTASLKPNTLTNGLKYSLATGNWG 504
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAET
Sbjct: 505 DQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 564
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNL+LM +SVG+ PI +FL M+ LEE PS + +KIF+NG WV
Sbjct: 565 PEGQACGLVKNLSLMCMVSVGTPAEPIYDFLVARGMDVLEEYEPSNSSSTSKIFINGTWV 624
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI------- 581
G+ E+L+ + LRR+ + EVS+I D+R+ E RI +DAGR+ RPL +
Sbjct: 625 GVANKIEELVDLVYDLRRKSRVD-PEVSLIHDVREGEFRIFSDAGRVMRPLFVVNQKDDP 683
Query: 582 ---AENGSLLLKKRHI--------DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
A+ GSL+L K H+ +NL D +YGWQ L GV++ +D +EET MI
Sbjct: 684 RTGAQAGSLVLTKEHVAKLHADKDNNLSPGDEGHYGWQGLKSDGVLDLMDAEQEETAMIC 743
Query: 631 M 631
M
Sbjct: 744 M 744
>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
Length = 1219
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 318/667 (47%), Positives = 433/667 (64%), Gaps = 45/667 (6%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETPP 62
E W VI ++F GLV QQ++SF++FI +Q I+++ P I+++ + ++ ++E+
Sbjct: 74 EDSWKVIGSFFSTHGLVHQQIESFNDFITYRMQEIIDEHPPIEIKPQPRYRPDDDLESNV 133
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE--PV 120
Y LKF Q+ L+KP EKDG + P EARLRNLTY++ +YVDI + + E
Sbjct: 134 TYRLKFGQLSLNKPCVEEKDGVFKHIWPQEARLRNLTYASQIYVDIEQETYLKDETTGAE 193
Query: 121 TTQHQKSF----IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
T Q + ++ +G++P+ML+STYC GL++ DL ++ ECP D GGYFI+NG E+VLIA
Sbjct: 194 TLQDKTTYPRIPLGRMPMMLKSTYCWTKGLSEEDLADVGECPYDQGGYFIVNGGERVLIA 253
Query: 177 QEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSS--RPTSTLWVNMMARGGQSLKKSAIG 233
QE+MA N +YVF K SKY++ EIRS E S P S + + + G K
Sbjct: 254 QERMANNFIYVFKKKQPSKYSFVAEIRSQAEFSQGITPFSIMMKSSLGAPGSRFKSHG-- 311
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
+++A +PY++ +IP+ I+FRALG VADRDIL+ I+YDF+D +M+ +++ +L+EA
Sbjct: 312 -QLVATIPYLRADIPVPILFRALGCVADRDILQRIVYDFEDKQMLNLMRATLEEASDYVT 370
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q L+FIG RG G E RI+YA+++L++ +LPHVG E KK YFLGYM+HRLL
Sbjct: 371 QETCLDFIGKRGPTVGAPLETRIQYAKDLLRQHLLPHVGTEPGSEGKKCYFLGYMIHRLL 430
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
L+ LGR DDR+H+ R Q+ ID G+ F++
Sbjct: 431 LSRLGRINEDDREHFGKKRLDLAGPLMASSFGTLFRKMAKDARRILQQQIDCGRAFDVAG 490
Query: 388 AIKTKI-ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
AI++ IT GL+Y L TGNWG ++ R GVSQVLNRLTFAS LSHLRR+N+P+GR+
Sbjct: 491 AIRSATTITQGLQYQLLTGNWGRDREGKIVRTGVSQVLNRLTFASYLSHLRRLNTPLGRE 550
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GK+AKPRQLHNT WGMICPAETPEG AVGLVKNLALM YISVGS + I EFL EW M++
Sbjct: 551 GKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSVAATINEFLSEWGMDS 610
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
L+E+ P + D KIF+NG WVG + + L+ TL +LRR+ D I SE SI+RDI +E+
Sbjct: 611 LDEVPPEVVKDRVKIFINGTWVGCFDEADSLVRTLLELRRRGD-ISSETSIVRDIVSQEV 669
Query: 567 RIHTDAGRICRPLLIAENG-SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEE 625
+I TDAGR RPL I ENG +L + K HI + D N W LV+SGV+EYID EEE
Sbjct: 670 KIFTDAGRAMRPLFIVENGNTLAINKEHIAMI---DNNECNWDGLVESGVIEYIDCEEEE 726
Query: 626 TTMIAMW 632
MI M+
Sbjct: 727 MCMIGMF 733
>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
Length = 1177
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 316/677 (46%), Positives = 438/677 (64%), Gaps = 54/677 (7%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTE-VE 59
+ QE W +I YF ++GLV QQL+SF++FI +Q IV++ P I + ++Q+ E ++
Sbjct: 16 IQQEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQID 75
Query: 60 TPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---QG 116
T RY+LKF Q+ LS+P+ E++G + PNEARLRNLTYS+P++VD + V + G
Sbjct: 76 TKVRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLEDDG 135
Query: 117 EEPVT--TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
E + T + + + KIPIMLRS YC + +++R+L EC D GGYFIING EKVL
Sbjct: 136 SETLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIINGMEKVL 195
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
+ QE+MA N VY+F SKY + EIRS E + TS V + G G
Sbjct: 196 VGQERMANNFVYLFQKNQPSKYTWIAEIRSNRE-GMQATSGFSVKLRGSDGNQ------G 248
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I+A LPYI+ +IPI I+FRALG ++D+DIL +YDF+D +M+ +++PSL+E F
Sbjct: 249 Q-IVATLPYIRTDIPIAILFRALGVLSDKDILSRCVYDFNDTQMLALLRPSLEETFEFFS 307
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q+V L+FIG RG G +E+RI+YA+E+ +KE+LPHVGV+ E++KAYF+GYMVH+L
Sbjct: 308 QDVCLDFIGKRGPTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGYMVHKLC 367
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
L +LGR DDRDH+ VR Q+ ID GK+F++
Sbjct: 368 LGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNIDNGKEFDVAG 427
Query: 388 AIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
I++ IT ++Y ATGNWG K R GVSQVL+RLTF S+LS+LRR+N+P+GR+
Sbjct: 428 VIRSASYITQTIQYQFATGNWGKDKDGKIIRTGVSQVLSRLTFTSALSYLRRLNTPLGRE 487
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GK AKPRQLHNT WGMICPAETPEG +VGLVKNLALM ISVG +P I FL+EW M++
Sbjct: 488 GKFAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGYRPYAIRTFLDEWGMDS 547
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
++EI P I K+F+NG WVG D E + LR +RR +I E SI+ D+ +RE+
Sbjct: 548 IDEIPPEGIKRKIKVFLNGNWVGCFDDSEDSISNLRMIRRSGEIPY-ETSIVLDVVNREV 606
Query: 567 RIHTDAGRICRPL-LIAENGSLLLKKRHIDNL----------KERDYNNYGWQVLVQSGV 615
++ TD+GR RPL ++ E+G L +KK HI++L E + ++Y W LV +G+
Sbjct: 607 KLFTDSGRSMRPLYIVGEDGDLKIKKSHINSLLNENPSFDEKMEDEKHDYTWDDLVNTGI 666
Query: 616 VEYIDTLEEETTMIAMW 632
+EYID EEET+MIAM+
Sbjct: 667 IEYIDCEEEETSMIAMF 683
>gi|67623921|ref|XP_668243.1| DNA-directed RNA polymerase II second largest chain
[Cryptosporidium hominis TU502]
gi|54659429|gb|EAL38006.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Cryptosporidium hominis]
Length = 733
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 316/675 (46%), Positives = 438/675 (64%), Gaps = 54/675 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTE-VETP 61
QE W +I YF ++GLV QQL+SF++FI +Q IV++ P I + ++Q+ E ++T
Sbjct: 18 QEDSWALIGTYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQIDTK 77
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---QGEE 118
RY+LKF Q+ LS+P+ E++G + PNEARLRNLTYS+P++VD + V + G E
Sbjct: 78 VRYVLKFGQLSLSRPSVEEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVYKLEDDGSE 137
Query: 119 PVT--TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
+ T + + + KIPIMLRS YC + +++R+L EC D GGYFIING EKVL+
Sbjct: 138 TLVYETVYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIINGMEKVLVG 197
Query: 177 QEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MA N VY+F + SKY + EIRS E + TS V + G GQ
Sbjct: 198 QERMANNFVYLFQKSQPSKYTWIAEIRSNRE-GMQATSGFSVKLRGSDGNQ------GQ- 249
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
I+A LPYI+ +IPI I+FRALG ++D+DIL +YDF+D +M+ +++PSL+E F Q+
Sbjct: 250 IVATLPYIRTDIPIAILFRALGVLSDKDILSRCVYDFNDTQMLALLRPSLEETFEFFSQD 309
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
V L+FIG RG G +E+RI+YA+E+ +KE+LPHVGV+ E++KAYF+GYMVH+L L
Sbjct: 310 VCLDFIGKRGPTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGYMVHKLCLG 369
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+LGR DDRDH+ VR Q+ ID GK+F++ I
Sbjct: 370 ALGRVPEDDRDHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNIDNGKEFDVAGVI 429
Query: 390 KT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
++ IT ++Y ATGNWG K R GVSQVL+RLTF S+LS+LRR+N+P+GR+GK
Sbjct: 430 RSASYITQTIQYQFATGNWGKDKDGKIIRTGVSQVLSRLTFTSALSYLRRLNTPLGREGK 489
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
AKPRQLHNT WGMICPAETPEG +VGLVKNLALM ISVG +P I FL+EW M++++
Sbjct: 490 FAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGYRPYAIRTFLDEWGMDSID 549
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
EI P I K+F+NG WVG D E + LR +RR +I E SI+ D+ +RE+++
Sbjct: 550 EIPPEGIKRKIKVFLNGNWVGCFDDSEDSISNLRMIRRSGEIPY-ETSIVLDVVNREVKL 608
Query: 569 HTDAGRICRPL-LIAENGSLLLKKRHIDNL----------KERDYNNYGWQVLVQSGVVE 617
TD+GR RPL ++ E+G L +KK HI++L E + ++Y W LV +G++E
Sbjct: 609 FTDSGRSMRPLYIVGEDGDLKIKKSHINSLLNENPSFDEKMEDEKHDYTWDDLVNTGIIE 668
Query: 618 YIDTLEEETTMIAMW 632
YID EEET+MIAM+
Sbjct: 669 YIDCEEEETSMIAMF 683
>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
Length = 1171
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 316/612 (51%), Positives = 414/612 (67%), Gaps = 49/612 (8%)
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV--VRQGEEPVT 121
+ ++F Q+ L+KPT E DG+ + + PN+ARLRNLTYS+P+YV++T+T + ++P +
Sbjct: 65 FPVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADPDDPNS 124
Query: 122 TQ-------HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
+ + K IG+IP+ML+S YC L T+R L E+ EC D GGYFIINGSEKVL
Sbjct: 125 EKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIINGSEKVL 184
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMAR-GGQSLKKSAI 232
IA E+MA N VY F K +KY + EIRS E TS V M+A GG+S +A
Sbjct: 185 IAMERMANNFVYCFQKKQPAKYTWICEIRSQAE-GMLSTSGFSVKMLANLGGRS---AAR 240
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
GQ I+ +PYI +IP++I+FRALG V+DR+++E I+YDF D +MM +++PS++EA I
Sbjct: 241 GQ-IVCSMPYINADIPVVILFRALGCVSDREVIERIVYDFSDTQMMFLLRPSIEEAMPIM 299
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q VAL+FI RG G +K RI+YA+E+LQKE+LPH+GV +CE +KAYF+GYMVHRL
Sbjct: 300 SQEVALDFIAKRGPTIGTSKSGRIQYAKELLQKELLPHLGVKQYCEPRKAYFIGYMVHRL 359
Query: 353 LLASLGRRELDDRDHYVRM------------YAQKF--------------IDRGKDFNLE 386
LL LGR DDRDH+ + +AQ F +D G+ F+L
Sbjct: 360 LLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDSGRHFDLN 419
Query: 387 LAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
AI++ ITDGLRY LATGNWG K R GVSQVLNRLTF S++SHLRR+N+P+ R
Sbjct: 420 SAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNTPLER 479
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
GKLAKPRQLHNT WGMICPAETPEG AVGLVKN+ALM I+VGS P+ + +FL EW +E
Sbjct: 480 SGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTITVGSLPNVVYDFLNEWGLE 539
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
NL+EI PS I TK+F+NG WVG+H D L TLR LRR+ DI EVSIIRD++ E
Sbjct: 540 NLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETLRDLRRKRDID-PEVSIIRDLQANE 598
Query: 566 IRIHTDAGRICRPLLIAE---NGSLLLKKRHIDNLKERDYNNY--GWQVLVQSGVVEYID 620
+RI TD GR CRPL + + + L +K+ H++ L+ NN GW +LV+ G+VEYID
Sbjct: 599 LRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEALRRMLLNNEHGGWDMLVEEGLVEYID 658
Query: 621 TLEEETTMIAMW 632
EEET M+AM+
Sbjct: 659 AEEEETCMVAMF 670
>gi|83415493|gb|ABC17954.1| RNA polymerase II second largest subunit, partial [Phycomyces
blakesleeanus]
Length = 801
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/489 (59%), Positives = 366/489 (74%), Gaps = 32/489 (6%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MATNTVYVF+ S Y EIRS E S+ S L++ MM S
Sbjct: 1 SEKVLIAQERMATNTVYVFAKAPPSNVQYTAEIRSQPEKGSKNASPLYIKMMR---ASTD 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ GQ I A LPYI+ +IPI+IVFRALG VADRD+LEHI YD +D EM+EM+KPS++EA
Sbjct: 58 RGGTGQCIRATLPYIRSDIPIVIVFRALGQVADRDVLEHICYDRNDYEMLEMLKPSIEEA 117
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ+Q+VAL+FIG RG G T+ERR KYA EILQKE+LPHVG + ET+K+YF GYM
Sbjct: 118 FVIQDQDVALDFIGKRGTTVGATRERRTKYATEILQKELLPHVGTAYKTETRKSYFFGYM 177
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA+L RRELDDRDHY V Y QK I+ ++
Sbjct: 178 IHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFKKLTKDVAKYLQKCIESSRE 237
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K+ IT+GL+YSLATGNWGDQKKA QARAGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 238 FNLTLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTP 297
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+YISVGS +P++ FLEEW
Sbjct: 298 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSAATPLIMFLEEW 357
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+MENLEE++ + I DATK+FVNG W+G+HRDP +L+ +L+ +RR +D I EVSI+RDIR
Sbjct: 358 AMENLEELSANNIPDATKVFVNGVWIGVHRDPGELVNSLKSMRRSVD-ISPEVSIVRDIR 416
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTL 622
++E+R++TDAGR CRPL + ++ L L + H+ L++ + ++Y WQ ++ G+VEY+D
Sbjct: 417 EKELRMYTDAGRCCRPLFLVQDQQLRLTRDHLSRLQDPE-DSYRWQDMISDGIVEYVDAD 475
Query: 623 EEETTMIAM 631
EEET MI M
Sbjct: 476 EEETAMICM 484
>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
Length = 1207
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 313/665 (47%), Positives = 425/665 (63%), Gaps = 41/665 (6%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQ-HTSTEVETPP 62
E W VI ++F+ GLV QQ++SF++F+ +Q ++ P I++ + Q H E E
Sbjct: 59 EDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETIDQHPPIEITPQPQYHPEDERENNI 118
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
Y LKF Q+ L+KP E G + P EARLRNLTYS+ +YVDI + + E T
Sbjct: 119 VYKLKFGQLSLNKPCVEEMAGVLKHIWPQEARLRNLTYSSQIYVDIEQKTYLRDENTNTE 178
Query: 123 QHQKSF------IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
Q++ +G+IP+ML+S YC +++ DL ++ ECP D GGYFI+NG E+VLI
Sbjct: 179 TLQETITYPRIELGRIPMMLKSAYCWTKDISEDDLADVGECPFDEGGYFIVNGGERVLIG 238
Query: 177 QEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MA N +Y+F K SKY+ EIRS E S + T+ + M + G + + +
Sbjct: 239 QERMANNYIYIFKKKQPSKYSLVAEIRSQPEFS-QGTTPFSIMMKSTSGIAGNRFKSHGQ 297
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
++ +PY+K +IPI I+FRALG VADRDIL+ I+YDF+D +M+ +++PSL+E Q
Sbjct: 298 LVGSIPYLKSDIPIAILFRALGCVADRDILQRIVYDFEDKQMLTLMRPSLEETADYSTQE 357
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
+ L+FIG RG G E R++YA+++L++ LPHVG CE++K YFLGYMVHRLLL+
Sbjct: 358 MCLDFIGKRGPTVGAPLETRVQYAKDLLRQHFLPHVGTEPGCESRKCYFLGYMVHRLLLS 417
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
LGR DDRDH+ + Q+ ID G++F++ A+
Sbjct: 418 RLGRIPEDDRDHFGKKRLDLAGSLMASSFGTLFRKMVKDTKRILQQQIDSGREFDVAGAV 477
Query: 390 KTKI-ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
++ IT GL+Y L TGNWG + R GVSQVLNRLTFAS LSHLRR+N+P+GR+GK
Sbjct: 478 RSATQITHGLQYQLLTGNWGRDRDGKVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGK 537
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
+AKPRQLHNT WGMICPAETPEG AVGLVKNLALM +ISVG+ S I EFL EW M++L+
Sbjct: 538 IAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCFISVGTAASTINEFLCEWGMDSLD 597
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
E+ P I D KIF+NG WVG + E L+ TL +LRR+ + I +E SI+ DI +E++I
Sbjct: 598 EVPPEVIKDRIKIFINGTWVGCFDEAESLVKTLLELRRRGN-IAAETSIVCDIVSQEVKI 656
Query: 569 HTDAGRICRPLLIAENG-SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
TDAGR RPLLI ENG +L + K I L D N W L++SGVVEY+D EEE
Sbjct: 657 FTDAGRAMRPLLIVENGNTLAITKTDIARL---DNNECNWDGLIESGVVEYVDCEEEEMC 713
Query: 628 MIAMW 632
MIAM+
Sbjct: 714 MIAMF 718
>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1194
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 308/673 (45%), Positives = 432/673 (64%), Gaps = 43/673 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH---TSTE 57
+ QE W VI AYFD+ GLV QQ+ SFD F+ +VQ IV ++ I +Q E Q + E
Sbjct: 32 ITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTISIQPELQFAPGSMNE 91
Query: 58 VETPPRYLLKFEQIYLS-KPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK--TVVR 114
+Y + Q+ ++ KP E D + + PNEARLRNLTY LYV++ K VV
Sbjct: 92 SRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQDKVVE 151
Query: 115 QGEEPVTTQHQKS---FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSE 171
Q V Q ++GK+P+M+RS +C LNG+ + + E+ EC D GGYFIING E
Sbjct: 152 QDGSEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFIINGGE 211
Query: 172 KVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARG----GQS 226
KV++A E+MA N VYVF K SK+++ E+RS ++ S+RP + + M ++G G S
Sbjct: 212 KVIVAHERMANNFVYVFHKKQPSKFSWVAEVRSQVDASNRPPNQFSIKMYSKGQRRAGGS 271
Query: 227 LKKSAI-GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
I GQ + A +PYI +IP+ I+FRAL ++D++IL+ I YD D MME ++ SL
Sbjct: 272 FSGGKIFGQTLCASIPYINADIPVAILFRALNCISDKEILDRICYDSTDSHMMEAMRASL 331
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
+E Q AL++IG+RG GV +E RI++AREIL++ LPHV D CE++K+YF+
Sbjct: 332 EEGTPFLTQEDALSYIGSRGTAGGVGREERIRHAREILKRHFLPHVSTKDSCESQKSYFI 391
Query: 346 GYMVHRLLLASLGRRELDDRDHY---------------VRMYAQKFI-----------DR 379
GYM HRLL A LGR + DDRDHY R ++F+ D+
Sbjct: 392 GYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRNLFRRFVKEAGRYLKAQADK 451
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
G N+ A K II+DGL+Y+LATGNWG ++ GVSQVLNRLTFAS+LSHLRR+
Sbjct: 452 GDSLNITKAFKKDIISDGLKYALATGNWGTNAAGEVSKTGVSQVLNRLTFASTLSHLRRL 511
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+P+ + GKL KPRQLHNT WGM+CPAETPEG A GLVKNL+LMA++SVGS + E L
Sbjct: 512 NTPLQKSGKLTKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAFVSVGSAAERLREIL 571
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
E + ENL I+PS I ++TK+FVNGCW+GIH + E L+ ++ +RR + +I E+SI+R
Sbjct: 572 ENYGTENLVSISPSDIHESTKVFVNGCWIGIHNESEDLINNIKLMRRAL-LIPKEISIVR 630
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEY 618
DI +RE++ +TD GR+ RPL I ++ L+LKK H+ L++ + ++ + ++ G+VE+
Sbjct: 631 DIPNREVKFYTDHGRVQRPLFIVDDNRLILKKTHVVRLQDHERSDSMNFDDTLKEGLVEF 690
Query: 619 IDTLEEETTMIAM 631
+D EEET+MIAM
Sbjct: 691 LDVEEEETSMIAM 703
>gi|258596921|ref|XP_001349662.2| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
gi|254688481|gb|AAC71932.3| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium falciparum 3D7]
Length = 1340
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 306/683 (44%), Positives = 445/683 (65%), Gaps = 43/683 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ ++ W+VI ++F GLV QQ++S+++FI+ +Q I+++ P+I+++ + Q+ + E
Sbjct: 31 ITEDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDEN 90
Query: 61 PPR-YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDI---TKTVVRQG 116
Y LKF Q+ L +P + EK+ S + P EARLRNLTYS+ +Y+DI T +
Sbjct: 91 DNIIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVT 150
Query: 117 EEPVTTQ---HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
++PV + +++ +G+IP+ML+S +C GL + ++ ++ EC D GGYFI+NG EKV
Sbjct: 151 KKPVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKV 210
Query: 174 LIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMAR-GGQSLKKSA 231
L+AQE+MA N +YVF K SK+ + EIRS +E S + TS V M R GG +
Sbjct: 211 LVAQERMANNFIYVFKKKQPSKFGWVAEIRSQMERS-QATSGFSVKMKTRSGGSQYGSNK 269
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
G +++A LPYI+ EI + I+FRALG +DRDIL+ I+YDF+D M+ ++ +L+E
Sbjct: 270 SGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEY 329
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q+V L+FIG RG G ++E+RI YA+E+L+KE+LPH+G E+KK+YF+GYM++R
Sbjct: 330 PTQDVCLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINR 389
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLLA LGR + DDRDH+ VR Q+ ID K F++
Sbjct: 390 LLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVRRVLQRQIDNNKPFDV 449
Query: 386 ELAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
AI++ IT G++Y LATGNWG K R GV+QVLNRLT++S LSHLRR+N+P+G
Sbjct: 450 AGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLG 509
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
R+GK+AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM ISVG+ + I EFL EW +
Sbjct: 510 REGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGL 569
Query: 505 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR 564
E+L+E+ P + + K+F+NG WVG + L+ TL +LRR+ D I E SI+RD+ +
Sbjct: 570 ESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCD-ISPEASIVRDVNSK 628
Query: 565 EIRIHTDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYID 620
EI+I TD+GR RPL + +N L L K H++N+ E+ Y W L+Q G++EYID
Sbjct: 629 EIKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNI-EKYPETYNWDYLIQEGIIEYID 687
Query: 621 TLEEETTMIAMWQVLVQSGVVEY 643
EEETTMI+M+ +++G Y
Sbjct: 688 CEEEETTMISMFIDDLKTGTGYY 710
>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1189
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/665 (46%), Positives = 429/665 (64%), Gaps = 50/665 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
+E W VI ++F+E GLV QQ++SF++FI +Q I++ P I++ + + E E
Sbjct: 58 EEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPAIEITPQPNYRPEEEEENS 117
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV- 120
Y LKF Q+ L+KP+ EKDG + P EARLRNLTY++ +Y+DI + E +
Sbjct: 118 VLYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQQTFLNEEGNLV 177
Query: 121 ---TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
+T + + + +IP+ML+S YC GLT+ DL+++ EC D GGYF++NG E+VLIAQ
Sbjct: 178 QTDSTVYPRVPLCRIPMMLKSAYCWTKGLTEHDLSDIGECVFDQGGYFVVNGGERVLIAQ 237
Query: 178 EKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
E+MA N VYVF+ K+ KY+ ++RS + S TS ++M Q K +++
Sbjct: 238 ERMANNFVYVFNKKNQKYSAVAQLRSQPDFSQGVTS---FSIMILNSQLAKN-----KML 289
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A LPY+K ++P+ I+FRALG ++DRDIL+ I+YDF D +M+ +++ +L+E Q
Sbjct: 290 AALPYVKGDVPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSTLEECSEYTSQEQC 349
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG RG G E RI+YA+++L++ LPHVG E+KK +++GYM+HRLLL L
Sbjct: 350 LDYIGKRGPTVGAPLEARIQYAKDLLRRHFLPHVGTEVGSESKKCFYVGYMIHRLLLNQL 409
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GR DDR+H+ V+ Q ID G+ F++ AIK+
Sbjct: 410 GRINEDDREHFGKKRLDLAGALMASSFGALFRKLAKDVKKLLQNQIDSGRSFDVAGAIKS 469
Query: 392 -KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
IT GL+Y L TGNWG K+ + R GVSQVLNRLTFAS LSHLRR+N+P+GR+GK+A
Sbjct: 470 CSQITQGLQYQLLTGNWGRDKEGNVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKMA 529
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
KPRQLHNT WGMICPAETPEG AVGLVKNLALM YISVGS S IL+FL E+ M++L+EI
Sbjct: 530 KPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSMTSTILDFLLEFGMDSLDEI 589
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
+P I D KIF+NG W+G+ P+ L+ L +LRR+ + I SE SI+RDI EI+I T
Sbjct: 590 SPVLIKDRVKIFLNGTWIGVFNQPDALVNLLLELRRKGN-ISSETSIVRDILSNEIKIFT 648
Query: 571 DAGRICRPLLIAENGSLLLKKRH---IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
D+GR RPL I EN LL+ KRH I+N N W L++SGVVEYID EEE
Sbjct: 649 DSGRSMRPLYIVENNRLLITKRHALMIEN------NQLNWSGLLESGVVEYIDCEEEEIC 702
Query: 628 MIAMW 632
MIAM+
Sbjct: 703 MIAMF 707
>gi|68131866|gb|AAY85211.1| RNA polymerase II second largest subunit [Gunnera chilensis]
Length = 453
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/454 (64%), Positives = 348/454 (76%), Gaps = 34/454 (7%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIML+S+YC
Sbjct: 3 ATLFPKAARLRNLTYSAPLYVDVTKRVIKRGHDCEELTETQDFTKVFIGKVPIMLKSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
++ T++DLTEL ECPLD GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E
Sbjct: 63 TVHQNTEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E +RP S+++V M++R S K A GQ I A LPYI+ EIPI+IVFRALGFVA
Sbjct: 123 VRSMAESQNRPPSSMFVRMLSRA--SAKGGASGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI Y+F D +MME+++PSL+EAFVIQ Q VAL++IG RG+ GVTKE+RIKYA+
Sbjct: 181 DKDILEHICYEFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAK 240
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL ++GRR DDRDHY
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 359
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A
Sbjct: 360 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQAC 419
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
GLVKNLALM YI+VGS +PILEFLEEWS EN E
Sbjct: 420 GLVKNLALMVYITVGSAANPILEFLEEWSTENFE 453
>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
Length = 1184
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 316/694 (45%), Positives = 444/694 (63%), Gaps = 56/694 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTE-VETP 61
QE W +I YF ++GLV QQL+SF++FI +Q IV++ P I + + Q+ E ++T
Sbjct: 12 QEDSWALIGTYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDEQIDTS 71
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
+Y+LKF Q+ LS+P+ E++G + P+EARLR+LTY++P++VD + + R E+
Sbjct: 72 IQYVLKFGQLSLSRPSVEEREGVARGLWPSEARLRSLTYASPVFVDAEQKIYRMHEDGTQ 131
Query: 122 TQ-HQKSF----IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
T H+ ++ + KIPIMLRS YC + +++R+L EC D GGYFIING EKVLI
Sbjct: 132 TLLHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIINGMEKVLIG 191
Query: 177 QEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ- 234
QE+MA N VY+F K SKY + E+RS E M A G S+K Q
Sbjct: 192 QERMANNFVYLFQKKQPSKYTWIAEVRSNRE-----------GMQATSGFSVKLRGGSQG 240
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
+++A LPYI+ +IPI I+FRALG ++D+DIL +YDF D +M+ +++PSL+E F Q
Sbjct: 241 QVVATLPYIRTDIPIAILFRALGVLSDKDILLRCVYDFSDSQMLAILRPSLEETFEFSSQ 300
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
V L+FIG RG G +E+RI+YARE+L++E+LPHVGV+ CE +KAYF+GYMVHRL +
Sbjct: 301 EVCLDFIGKRGPTVGAIREKRIQYARELLEREVLPHVGVTIGCEFRKAYFIGYMVHRLCM 360
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
+LGR DDRDH+ +R Q+ ID GK+F++
Sbjct: 361 GALGRVPEDDRDHFGKKRLDLAGPLVAASFGQSFRKMMKDMRRLLQRNIDNGKEFDVAGV 420
Query: 389 IKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
I++ IT L+Y ATGNWG + R GV+QVL+RLTFAS+LS+LRR+N+P+GR+G
Sbjct: 421 IRSASYITQTLQYQFATGNWGKDRDGKIVRTGVAQVLSRLTFASALSYLRRLNTPLGREG 480
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
LAKPRQLHNT WGMICPAETPEG AVGLVKNLALM ISVG +P I FL+EW M+++
Sbjct: 481 TLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMCEISVGYRPFAIRTFLDEWGMDSI 540
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
+E+ P I D K+F+NG WVG D E + LR +RR +I E SI+ D+ +RE++
Sbjct: 541 DEVPPEDIKDKIKVFLNGNWVGCFDDSEDSITNLRMIRRSGEIPY-ETSIVLDVVNREVK 599
Query: 568 IHTDAGRICRPL-LIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGVVEYIDTL 622
+ TDAGR RPL ++ E+G L ++K HI L + +N ++L + + E +
Sbjct: 600 LFTDAGRSMRPLYIVGEDGELKIRKSHIATLLGIKMPENNSNEDMKILSEVDLPEGGISR 659
Query: 623 EEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+ + T W L++SG++EYID EEET MIAM
Sbjct: 660 DSDFT----WDDLIKSGIIEYIDCEEEETAMIAM 689
>gi|70794978|gb|AAZ08463.1| RNA polymerase II second largest subunit [Liquidambar acalycina]
Length = 453
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 293/454 (64%), Positives = 343/454 (75%), Gaps = 34/454 (7%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC
Sbjct: 3 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
L +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E
Sbjct: 63 TLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVA
Sbjct: 123 VRSMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVTKE+RIKYA+
Sbjct: 181 DKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAK 240
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDR HY
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRAHYGNKRLDLAGPLL 300
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 301 GGLFRMLFRKLTRDVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 359
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A
Sbjct: 360 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQAC 419
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
GLVKNLALM YI+VGS PILEFLEEW EN E
Sbjct: 420 GLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 453
>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
Ankara]
gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria
annulata]
Length = 1223
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 312/681 (45%), Positives = 429/681 (62%), Gaps = 63/681 (9%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
+E W VI ++F+E GLV QQ++SF++FI +Q I++ P I++ + + EVE
Sbjct: 58 EEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQPNYRPEEEVENS 117
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
Y LKF Q+ LSKP+ EKDG + P EARLRNLTY++ +Y+DI + + +T
Sbjct: 118 VVYKLKFGQLSLSKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETYINEDGKLT 177
Query: 122 ----TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
T + + + ++P+M +S+YC GL D+DL+++ EC D GGYF++NG E+VLIAQ
Sbjct: 178 QTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDQDLSDIGECVFDQGGYFVVNGGERVLIAQ 237
Query: 178 EKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
E+MA N VYVF+ K+SKY+ ++RS + TS + +M Q K +++
Sbjct: 238 ERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQGVTS---LTIMISNSQLTK-----NKMV 289
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A+LPYI+ +IP+ I+FRALG ++DRDIL+ I+YDF D +M+ +++ SL+E Q
Sbjct: 290 AVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSSLEECSEYTSQEQC 349
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L+FIG RG G +E R+ +A+E L++ LPHVG E+KK ++LGYM+HRLLL L
Sbjct: 350 LDFIGKRGPTVGALQEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQL 409
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GR DDR+H+ V + + ID G+ F++ AIK+
Sbjct: 410 GRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQIDSGRSFDVAGAIKS 469
Query: 392 -KIITDGLRYSLATG-------------------NWGDQKKAHQARAGVSQVLNRLTFAS 431
IT GL+Y L TG NWG K + R GVSQVLNRLTFAS
Sbjct: 470 CSQITQGLQYQLLTGTHSKIIKIKFILLKKFTIWNWGRDKDGNVVRTGVSQVLNRLTFAS 529
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
LSHLRR+N+P+GR+GK+AKPRQLHNT WGMICPAETPEG AVGLVKNLALM YISVGS
Sbjct: 530 YLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSL 589
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
S IL+FL E+ M++L+EI+P I D KIF+NG WVG+ P+ L+ L +LRR+ + I
Sbjct: 590 SSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGN-I 648
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLV 611
SE SI+RDI EI+I TD+GR RPL I EN LL+ KRH + ++ N W L+
Sbjct: 649 SSETSIVRDIMSNEIKIFTDSGRSMRPLYIVENNRLLITKRHANMIEN---NQLTWSGLM 705
Query: 612 QSGVVEYIDTLEEETTMIAMW 632
++GVVEYID EEE MIAM+
Sbjct: 706 ETGVVEYIDCEEEEICMIAMF 726
>gi|46142986|gb|AAS80336.1| RNA polymerase II [Gibberella moniliformis]
Length = 973
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 304/642 (47%), Positives = 407/642 (63%), Gaps = 86/642 (13%)
Query: 73 LSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV------------------- 113
+S+P+ E DG+ + ++P E R RNLTY+AP Y+ ITK V
Sbjct: 1 VSRPSMSETDGTVTNLLPYECRDRNLTYAAPTYLKITKKVSVAVDKEVPLHEMDDEQQAE 60
Query: 114 --RQGEEP-------------VTTQHQKS---FIGKIPIMLRSTYCLLNGLTDRDLTELN 155
R GE P + + + S FIGK+PIM++S C L+ +D DL LN
Sbjct: 61 YKRTGENPTKLVWEVEEDAGSIKAEDEPSEMIFIGKMPIMVKSKICHLSSHSDEDLFMLN 120
Query: 156 ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTST 214
ECP D GGYF+INGSEKVLIAQE+ A N V VF + S + Y EIRS LE SR S+
Sbjct: 121 ECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTYTAEIRSALEKGSRLISS 180
Query: 215 LWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 274
L + + +G + + GQ I A LP++K ++P+ IVFRALG V+D DIL HI YD +D
Sbjct: 181 LTMKLYGKGDSA--RGGFGQTIQATLPFVKADLPVAIVFRALGVVSDEDILNHICYDRND 238
Query: 275 PEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR--PGVTKERRIKYAREILQKEMLPHVG 332
+M+EM++P ++EAF +Q++ VAL+FIG RG R + +E+R++ A++ILQKE LPH+
Sbjct: 239 SQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLGREKRVRVAKDILQKETLPHIS 298
Query: 333 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--------------------- 371
S+ ET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 299 QSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGPLLAKLFRGIIRRIN 358
Query: 372 -----YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 426
Y ++ ++ ++FNL +AIK +++GL+YSLATGNWGDQKKA + AGVSQVLNR
Sbjct: 359 TELSNYLKRCVESNRNFNLTVAIKPSTLSNGLKYSLATGNWGDQKKAASSTAGVSQVLNR 418
Query: 427 LTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+
Sbjct: 419 YTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYV 478
Query: 487 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR 546
SVGS P++EF+ ME +EE P+ ATKIFVNG WVG+H DP+ L+ + RR
Sbjct: 479 SVGSPAEPLIEFMINRGMEVVEEYEPTRYPHATKIFVNGSWVGVHADPKHLVNQVLDTRR 538
Query: 547 QMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA------EN----GSLLLKKRHIDN 596
+ + EVS++RDIRDRE +I +DAGR+ RP+ EN G L+L K H++
Sbjct: 539 K-SYVQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVHQEDDYENNITKGQLVLTKEHVNR 597
Query: 597 LKERDY-------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L + + +GW L++ G VEY+D EEET MI M
Sbjct: 598 LAQEQAEPPANPEDKFGWDGLIREGAVEYLDAEEEETAMICM 639
>gi|221053005|ref|XP_002257877.1| DNA-directed RNA polymerase II second largest subunit [Plasmodium
knowlesi strain H]
gi|193807709|emb|CAQ38413.1| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium knowlesi strain H]
Length = 1371
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 298/671 (44%), Positives = 431/671 (64%), Gaps = 42/671 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ +E W+VI ++F GLV QQ++S+++FI+ +Q I+++ P ++++ +AQ+ S E
Sbjct: 72 ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPALEIRPQAQYRSEGDEQ 131
Query: 61 PP-RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
Y LKF Q+ L +P + E++ + + P EARLRNLTYS+ +Y+DI ++ E
Sbjct: 132 KNVMYALKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTYVVDESS 191
Query: 120 VTTQHQKSFI------GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
+ + FI G+IP+ML+S +C GL + ++ ++ EC D GGYFI+NG EKV
Sbjct: 192 GSQILKDKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEKV 251
Query: 174 LIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
L+AQE+MA N +YVF K SK+ + EIRS +E S + TS V M + G
Sbjct: 252 LVAQERMAHNFIYVFKKKQPSKFGWVAEIRSQMERS-QATSAFSVKMKTKTGSRGSSVRT 310
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
G +++A LPYI+ EI + I+FRALG +DRDIL+ I+YDF+D M+ ++ +L+E
Sbjct: 311 GGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEECIDYP 370
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q++ L+FIG RG G ++E+RI YA+E+L+KE+LPH+G E+KK+YF+GYM++RL
Sbjct: 371 TQDICLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTGPGVESKKSYFIGYMINRL 430
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
LLA LGR + DDRDH+ V+ Q+ ID K F++
Sbjct: 431 LLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQIDNNKPFDVA 490
Query: 387 LAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
A+++ IT G++Y LATGNWG K R GV+QVLNRLT++S LSHLRR+N+P+GR
Sbjct: 491 GAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGR 550
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GK+AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM ISVG+ + I EFL EW +E
Sbjct: 551 EGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIFEFLLEWGLE 610
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
+L+E+ P + + K+F+NG WVG + L+ TL +LRR+ D I E SI+RD+ +E
Sbjct: 611 SLDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCD-ISPEASIVRDVNSKE 669
Query: 566 IRIHTDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
I+I TD+GR RPL + +N L L K H+ N+ Y W L+Q G++EYID
Sbjct: 670 IKIFTDSGRAMRPLYVVKNVKGENKLKLTKEHVKNMMAYP-ETYNWDYLIQEGIIEYIDC 728
Query: 622 LEEETTMIAMW 632
EEETTMI+M+
Sbjct: 729 EEEETTMISMF 739
>gi|156093703|ref|XP_001612890.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148801764|gb|EDL43163.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Plasmodium vivax]
Length = 1339
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 298/667 (44%), Positives = 431/667 (64%), Gaps = 44/667 (6%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP-RYL 65
W+VI ++F GLV QQ++S+++FI+ +Q I+++ PQI+++ + Q+ S + Y
Sbjct: 37 WVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPQIEIRPQPQYRSDRDDNKNVMYA 96
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
LKF Q+ L +P + E++ + + P EARLRNLTYS+ +Y+DI ++ E + +
Sbjct: 97 LKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTYVVDESTRSQILK 156
Query: 126 KSFI------GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+ FI G+IP+ML+S +C GL + ++ ++ EC D GGYFI+NG EKVL+AQE+
Sbjct: 157 EKFIYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEKVLVAQER 216
Query: 180 MATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ--SLKKSAIGQRI 236
MA N +YVF K SK+ + EIRS +E S + TS V M + G S + G ++
Sbjct: 217 MAHNFIYVFKKKQPSKFGWVAEIRSQMERS-QATSAFSVKMKTKTGSRGSGGSARTGGQL 275
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
+A LPYI+ EI + I+FRALG +DRDIL+ I+YDF+D M+ ++ +L+E Q++
Sbjct: 276 VATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEECIDYPTQDI 335
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
L+FIG RG G ++E+RI YA+E+L+KE+LPH+G E+KK+YF+GYM++RLLLA
Sbjct: 336 CLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTGPGVESKKSYFIGYMINRLLLAE 395
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
LGR + DDRDH+ V+ Q+ ID K F++ A++
Sbjct: 396 LGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQIDNNKPFDVAGAVR 455
Query: 391 T-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
+ IT G++Y LATGNWG K R GV+QVLNRLT++S LSHLRR+N+P+GR+GK+
Sbjct: 456 SCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKM 515
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM ISVG+ + I EFL EW +E+L+E
Sbjct: 516 AKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIFEFLLEWGLESLDE 575
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
+ P + + K+F+NG WVG + L+ TL +LRR+ D I E SI+RD+ +EI+I
Sbjct: 576 VPPQLMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCD-ISPEASIVRDVNSKEIKIF 634
Query: 570 TDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEE 625
TD+GR RPL + +N L L K H+ N+ Y W L+Q G++EYID EEE
Sbjct: 635 TDSGRAMRPLYVVKNVKGENKLKLTKEHVKNMMAYP-ETYNWDYLIQEGIIEYIDCEEEE 693
Query: 626 TTMIAMW 632
TTMI+M+
Sbjct: 694 TTMISMF 700
>gi|402468837|gb|EJW03931.1| hypothetical protein EDEG_01777, partial [Edhazardia aedis USNM
41457]
Length = 736
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 309/687 (44%), Positives = 429/687 (62%), Gaps = 89/687 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L + W +++ YF+ KGL+ QQLDSF+ F+ ++Q IV+++ +I ++ +H +TE+
Sbjct: 6 LTTDDTWQILSTYFNSKGLLSQQLDSFNSFVGTTLQEIVDENKEIRIKTSNEHLATEI-- 63
Query: 61 PPRYLLKFEQIYLS-KPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR---QG 116
+ L F QIY P+ E DG + P+E RLR+LTY PLY+DI+ R Q
Sbjct: 64 ---FNLTFNQIYAKIPPSIVETDGQVRSVTPSEVRLRDLTYMCPLYIDISVKKGRISAQR 120
Query: 117 EEPVTT-----------QHQKSF--IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 163
P+ + QH S IG IPIM+RS++C L + ECP D GG
Sbjct: 121 NTPLFSSTIDDDGVLYDQHSYSKVPIGSIPIMVRSSHCATAKLDSGSVATYGECPYDYGG 180
Query: 164 YFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARG 223
YFI+NGSEKVLI+QE+M+TN V+V+S D +A EIRS E S+ + +V
Sbjct: 181 YFIVNGSEKVLISQERMSTNHVHVYSKNDVYFA---EIRSAQEKGSKMSKPFYVK----- 232
Query: 224 GQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYD----------FD 273
IG+ ++ LPYIK +IP++I+FRALGF++D+DIL HI+YD D
Sbjct: 233 -------KIGKILVCNLPYIKGDIPVVILFRALGFISDKDILSHILYDDKHLEGENVVID 285
Query: 274 D--PEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHV 331
D ++ ++ ++++F IQ++ +A ++IG RGA G + +RI++A IL+KE LPH+
Sbjct: 286 DYTTDVHSILGACIEDSFAIQDKEMARDYIGKRGAPAGSPRAKRIQFATSILEKEFLPHI 345
Query: 332 GVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------------------- 368
G +DF E++KAYFLGYM++RLLL SLG+RE+DDRDHY
Sbjct: 346 GTTDFLESRKAYFLGYMINRLLLVSLGKREIDDRDHYGKKRLDMCGSLLSGLFRTLFRKL 405
Query: 369 ---VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLN 425
+ + QK I+ G+DFN+ L +KT I+T+G RY+LATGNWG+Q K Q++AGV+QVLN
Sbjct: 406 VNETQKHMQKCIENGRDFNIALGLKTSILTNGFRYALATGNWGEQSKTMQSKAGVAQVLN 465
Query: 426 RLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAY 485
R + S+LSHLRRVN+PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+L+ Y
Sbjct: 466 RFNYISTLSHLRRVNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLLCY 525
Query: 486 ISVGSQPSPILEFLEEWSMENLEEIAPSAIADA-TKIFVNGCWVGIHRDPEQLMGTLRKL 544
ISVGS + I E+L+EW + NLE + S + TK+FVNG W G+ + + ++ L L
Sbjct: 526 ISVGSNSAKISEYLDEWGVVNLEMLENSKYSKKYTKVFVNGVWQGVCDNAKAIVEGLNIL 585
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN 604
+R +II EVSI+ DIR+ EIRI TDAGR CRPL + EN + R N
Sbjct: 586 KRTGEII-QEVSIVWDIRENEIRILTDAGRPCRPLFVVENDEV------------RVDNT 632
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ LV G +EY+D EEET+MI M
Sbjct: 633 LSFDDLVAEGRIEYLDVEEEETSMICM 659
>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
Muguga]
gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
Length = 1190
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 309/662 (46%), Positives = 424/662 (64%), Gaps = 58/662 (8%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH-TSTEVETP 61
+E W VI ++F+E GLV QQ++SF++FI +Q I++ P I++ + + E E
Sbjct: 58 EEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPIEITPQPNYRPEEEEENS 117
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITK-TVVRQGEEPV 120
Y LKF Q+ L+KP+ EKDG + P EARLRNLTY++ +Y+DI + T V + + V
Sbjct: 118 ILYRLKFGQLSLNKPSVEEKDGVFKHIWPQEARLRNLTYASQVYIDIEQETFVNENGKLV 177
Query: 121 ---TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQ 177
+T + + + ++P+M +S+YC GL DRDL+++ EC D GGYF++NG E+VLIAQ
Sbjct: 178 QTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGECVFDQGGYFVVNGGERVLIAQ 237
Query: 178 EKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
E+MA N VYVF+ K+SKY+ ++RS + TS + +M Q K +++
Sbjct: 238 ERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQGVTS---LTIMISNSQLTK-----NKMV 289
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A+LPYI+ +IP+ I+FRALG ++DRDIL+ I+YDF D +M+ +++ SL+E
Sbjct: 290 AVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRASLEEC--------- 340
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
RG G E R+ +A+E L++ LPHVG E+KK ++LGYM+HRLLL L
Sbjct: 341 -----KRGPTVGALHEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQL 395
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GR DDR+H+ V + + ID G+ F++ AIK+
Sbjct: 396 GRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQIDSGRSFDVAGAIKS 455
Query: 392 -KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
IT GL+Y L TGNWG K + R GVSQVLNRLTFAS LSHLRR+N+P+GR+GK+A
Sbjct: 456 CSQITQGLQYQLLTGNWGRDKDGNVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKMA 515
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
KPRQLHNT WGMICPAETPEG AVGLVKNLALM YISVGS S IL+FL E+ M++L+EI
Sbjct: 516 KPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSLSSTILDFLLEFGMDSLDEI 575
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
+P I D KIF+NG WVG+ P+ L+ L +LRR+ + I SE SI+RDI EI+I T
Sbjct: 576 SPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGN-ISSETSIVRDIMSNEIKIFT 634
Query: 571 DAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
DAGR RPL I EN LL+ K+H D ++ R W L+++GVVEYID EEE MIA
Sbjct: 635 DAGRSMRPLYIVENNRLLITKKHADMIENRQLT---WSGLLETGVVEYIDCEEEEICMIA 691
Query: 631 MW 632
M+
Sbjct: 692 MF 693
>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1274
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 322/718 (44%), Positives = 427/718 (59%), Gaps = 108/718 (15%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-P 62
E W VI++YFD KGLV QQ+DSF+EF +VQ ++++ + L + +
Sbjct: 46 EDSWEVISSYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDDGRDIILR 105
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT----------- 111
RY + F +I +S+PT E G ++P E R RNLTYSAP+Y +TK
Sbjct: 106 RYDVHFGEIIISRPTLTEATGETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPL 165
Query: 112 ----------VVRQGEEP--------------------VTTQHQKS--FIGKIPIMLRST 139
+ R GE P V ++ K F+GKIPIM++S
Sbjct: 166 NQLTDDEHDHMARTGEHPTVLRWIEEESAPPEPPKEDKVNAENLKGYLFLGKIPIMVKSK 225
Query: 140 YCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYK 198
C L D L LNECP D GGYFIINGSEKVLIAQE+ A N V VF +Y+
Sbjct: 226 ICHLYMEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQ 285
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 258
EIRS LE SR S+L + + + Q+ K + + LPY+K+E+ + IVFRALG
Sbjct: 286 AEIRSALEKGSRLISSLQMRLHTKADQN--KGRLANTVSVTLPYVKEEVSLAIVFRALGV 343
Query: 259 VADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIK 317
V+D DIL HI YD D +M+E ++P ++EAF IQ++ VAL++IG RG GV + RIK
Sbjct: 344 VSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVALDYIGKRGNGGAGVNRNARIK 403
Query: 318 YAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM------ 371
A+++LQKE+LPH+ ++ CET+KA+FLGYMVH+LL LGRR+ DDRDH+ +
Sbjct: 404 AAKDMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAG 463
Query: 372 --------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQK 411
Y ++ +D K F+L L IK +T+GL+YSLATGNWGDQK
Sbjct: 464 PLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQK 523
Query: 412 KAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
KA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAK P ETPEG
Sbjct: 524 KAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAK-------------PPETPEG 570
Query: 472 AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIH 531
A GLVKNL+LM ++SVG+ PI+EF+ +ME LEE P +ATK+FVNG WVG+H
Sbjct: 571 QACGLVKNLSLMCFVSVGTLADPIIEFMVARNMEVLEEYEPLRYPNATKVFVNGTWVGVH 630
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI---------- 581
+DP+ L+ ++ LRR+ +II EVS++RDIRDRE +I +DAGR+ RPL
Sbjct: 631 QDPKHLVTLVQNLRRK-NIISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDNGESG 689
Query: 582 AENGSLLLKKRHIDNLKE--------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
E G L+L K HI L++ DY +GWQ L++SG +EY+D EEET MI M
Sbjct: 690 VEKGQLILTKEHIRRLEQDKELGKYHEDY--FGWQGLLESGAIEYLDAEEEETAMICM 745
>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
macrogynus]
Length = 896
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/490 (58%), Positives = 360/490 (73%), Gaps = 43/490 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+ ATNTV+VFS S ++ EIRS E + S+ V M
Sbjct: 1 SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKM--------- 51
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ Q I A LPYI+Q+IPIM++FRALG VADRDILE I YDF D +M+EM+KPS+D A
Sbjct: 52 --SRDQNITASLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNA 109
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
F IQE+ VAL+FIG RG G+T+++RI+YA ++L++E+LPH+G++ C+T+K+YF+GYM
Sbjct: 110 FTIQEREVALDFIGKRGRNIGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYM 169
Query: 349 VHRLLLASLGRRELDDRDHY---------------VRMYAQKF-----------IDRGKD 382
VHRLLLA+LGRR++DDRDH+ R + QK I+RG++
Sbjct: 170 VHRLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERGRE 229
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL +AI + IT+GLRY+LATGNWGDQKK + RAGVSQVLNR TFAS+LSHLRR+N+P
Sbjct: 230 FNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTP 289
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALMAYISVGS PILEFLEEW
Sbjct: 290 IGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEW 349
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ ENLEEI SAI TK+FVNG WVGIHR P+ L+ TL LRR DI+ EVS++RD+R
Sbjct: 350 TTENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQTLISLRRSGDIM-PEVSVVRDVR 408
Query: 563 DREIRIHTDAGRICRPLLIA-ENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
D E+RI+TDAGRICRPL I E L+L++ H+ L + +GW+ L+ +G+VEY+DT
Sbjct: 409 DNELRIYTDAGRICRPLFIVNEQQQLVLRRDHVARL---EVGEWGWEELLANGIVEYLDT 465
Query: 622 LEEETTMIAM 631
EEETTMI M
Sbjct: 466 EEEETTMICM 475
>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
macrogynus]
Length = 867
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/490 (58%), Positives = 360/490 (73%), Gaps = 43/490 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+ ATNTV+VFS S ++ EIRS E + S+ V M
Sbjct: 1 SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKM--------- 51
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ Q I A LPYI+Q+IPIM++FRALG VADRDILE I YDF D +M+EM+KPS+D A
Sbjct: 52 --SRDQNITASLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNA 109
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
F IQE+ +AL+FIG RG G+T+++RI+YA ++L++E+LPH+G++ C+T+K+YF+GYM
Sbjct: 110 FTIQEREIALDFIGKRGRNIGLTRDKRIRYAHDLLERELLPHIGITPGCQTRKSYFIGYM 169
Query: 349 VHRLLLASLGRRELDDRDHY---------------VRMYAQKF-----------IDRGKD 382
VHRLLLA+LGRR++DDRDH+ R + QK I+RG++
Sbjct: 170 VHRLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERGRE 229
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL +AI + IT+GLRY+LATGNWGDQKK + RAGVSQVLNR TFAS+LSHLRR+N+P
Sbjct: 230 FNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTP 289
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALMAYISVGS PILEFLEEW
Sbjct: 290 IGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFLEEW 349
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ ENLEEI SAI TK+FVNG WVGIHR P+ L+ TL LRR DI+ EVS++RD+R
Sbjct: 350 TTENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQTLISLRRSGDIM-PEVSVVRDVR 408
Query: 563 DREIRIHTDAGRICRPLLIA-ENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
D E+RI+TDAGRICRPL I E L+L++ H+ L + +GW+ L+ +G+VEY+DT
Sbjct: 409 DNELRIYTDAGRICRPLFIVNEQQQLVLRRDHVARL---EVGEWGWEDLLANGIVEYLDT 465
Query: 622 LEEETTMIAM 631
EEETTMI M
Sbjct: 466 EEEETTMICM 475
>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
Length = 1182
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 312/676 (46%), Positives = 421/676 (62%), Gaps = 91/676 (13%)
Query: 9 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKF 68
VI ++FD KGLV QQ+DSFDEF ++Q +V++ + + E + + +
Sbjct: 52 VIQSHFDCKGLVAQQIDSFDEFTSTTIQSLVDEV------TKRARVAINEEVALKDMDEE 105
Query: 69 EQIYLS------KPTHWEK-DGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
+Q Y++ K WE+ D P T+ + GE+
Sbjct: 106 QQEYMARTGEAPKTIRWEEEDTGP-----------------------TEGSGKGGED--- 139
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
+ F+GK+P+M++S C L G D L LNECP D GGYFIINGSEKVLIAQE+ A
Sbjct: 140 -KGDLIFLGKLPVMVKSQVCHLAGEDDESLFLLNECPYDQGGYFIINGSEKVLIAQERSA 198
Query: 182 TNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
N V VF +Y+ EIRS LE SR S+L + + ++G S +K + + L
Sbjct: 199 ANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKG--SPEKGRLANTVSVTL 256
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PY+++++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ++ +AL+F
Sbjct: 257 PYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEAFCIQDREIALDF 316
Query: 301 IGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
IG RG G + R++ A+++LQKEMLPH+ ++ CET+KA+FLGYMVHRLL +LGR
Sbjct: 317 IGKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHRLLQCALGR 376
Query: 360 RELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTKI 393
R+ DDRDH+ + Y ++ ID K+F+L L IK
Sbjct: 377 RDPDDRDHFGKKRLDLPGPLLAKLFRNVIRRMTQDLMSYMKRCIDTNKNFSLPLGIKHST 436
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
+T+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPR
Sbjct: 437 LTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPR 496
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ PI+EF+ ME LEE P
Sbjct: 497 QLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLEEYEPL 556
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
+ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE +I +DAG
Sbjct: 557 RYPNATKVFVNGTWVGVHQDPKHLVTLVQGLRRK-NVISFEVSLVRDIRDREFKIFSDAG 615
Query: 574 RICRPLLI----------AENGSLLLKKRHIDNLK--------ERDYNNYGWQVLVQSGV 615
R+ RPL AE G+L+L K HI LK DY +GWQ L++SG
Sbjct: 616 RVMRPLFTVEQEPNGESGAEMGALILNKDHIGRLKMDAELGKYHPDY--WGWQGLLKSGA 673
Query: 616 VEYIDTLEEETTMIAM 631
+EY+D EEET MI M
Sbjct: 674 IEYLDAEEEETVMICM 689
>gi|390371063|dbj|GAB64944.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 1335
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 297/684 (43%), Positives = 438/684 (64%), Gaps = 47/684 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ +E W+VI ++F GLV QQ++S+++FI+ +Q I+++ P I+++ + Q+ S +
Sbjct: 31 ITEEDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPHIEIRPQPQYRSDRDDN 90
Query: 61 PP-RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT--VVRQGE 117
Y LKF Q+ L +P + E++ + + P EARLRNLTYS+ +Y+DI ++ VV +G
Sbjct: 91 KNVMYSLKFGQLSLDRPFYDERNLTNKNLWPQEARLRNLTYSSAIYIDIEQSTYVVEEGS 150
Query: 118 EPVTTQ----HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
+ + +++ +G+IP+ML+S +C GL + ++ ++ EC D GGYFI+NG EKV
Sbjct: 151 KNQILKEKFVYERINLGRIPLMLKSMFCWTKGLPESEIADMGECAFDQGGYFIVNGGEKV 210
Query: 174 LIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
L+AQE+MA N +YVF K SK+ + EIRS +E S + TS V M + G
Sbjct: 211 LVAQERMAHNFIYVFKKKQPSKFGWVAEIRSQMERS-QATSAFSVKMKTKTGSRGSGGGG 269
Query: 233 GQ-----RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
+++A LPYI+ EI + I+FRALG +DRDIL+ I+YDF+D M+ ++ +L+E
Sbjct: 270 SSARTGGQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINTLRETLEE 329
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
Q++ L+FIG RG G ++E+RI YA+E+L+KE+LPH+G E+KK+YF+GY
Sbjct: 330 CIDYPTQDICLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTGPGVESKKSYFIGY 389
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M++RLLLA LGR + DDRDH+ V+ Q+ ID K
Sbjct: 390 MINRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFSTYFRKMAKDVKRVLQRQIDNNK 449
Query: 382 DFNLELAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
F++ A+++ IT G++Y LATGNWG K R GV+QVLNRLT++S LSHLRR+N
Sbjct: 450 PFDVAGAVRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLN 509
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+P+GR+GK+AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM ISVG+ + I EFL
Sbjct: 510 TPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIFEFLL 569
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW +E+L+E+ P + + K+F+NG WVG + L+ TL +LRR+ D I E SI+RD
Sbjct: 570 EWGLESLDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCD-ISPEASIVRD 628
Query: 561 IRDREIRIHTDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
+ +EI+I TD+GR RPL + +N L L K H+ N+ Y W L+Q G++
Sbjct: 629 VNSKEIKIFTDSGRAMRPLYVVKNDKGENKLKLTKEHVKNMMAYP-ETYNWDYLIQEGII 687
Query: 617 EYIDTLEEETTMIAMWQVLVQSGV 640
EYID EEETTMI+M+ +++G
Sbjct: 688 EYIDCEEEETTMISMFIDDLKTGT 711
>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Pneumocystis carinii]
Length = 898
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 286/503 (56%), Positives = 366/503 (72%), Gaps = 46/503 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+ A NTV VF S +Y EIRS +E SS+ S + +M++ S++
Sbjct: 1 SEKVIIAQERSAANTVQVFKKPAPSAVSYVAEIRSAIEKSSKLMSNFQIKLMSK---SIE 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K A GQ I A LPYI+ +IPI+IVFRALG V DRDI+EHI YD +D +M+EM+KP ++EA
Sbjct: 58 KGA-GQTIRACLPYIRNDIPIVIVFRALGVVPDRDIMEHICYDPNDHQMLEMLKPCIEEA 116
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG+ G+ +E+R++YA++ILQKE+LPH+ ++ ET+KA+FLGYM
Sbjct: 117 FVIQEREVALDFIGKRGSAVGINREKRLRYAQDILQKELLPHITTTEGYETRKAFFLGYM 176
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLL +L RR+ DDRDH+ V Y QK ++ ++
Sbjct: 177 IHRLLLCALERRDPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYKYMQKCVETNRE 236
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K+ IT GLRYSLATGNWGDQKK AR GVSQVLNR TFAS+LSHLRR N+P
Sbjct: 237 FNLTLAVKSNTITHGLRYSLATGNWGDQKKIMSARVGVSQVLNRYTFASTLSHLRRTNTP 296
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+Y+SVGS +PI+EFLEEW
Sbjct: 297 IGRDGKVAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYVSVGSASAPIIEFLEEW 356
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
MENLE+ PSA + TK+FVNG W+G+HRDP L+ T++ LRR++DI V EVS++RDIR
Sbjct: 357 GMENLEDYNPSATPNTTKVFVNGVWLGVHRDPYHLVETIKSLRRKLDISV-EVSVVRDIR 415
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRH----IDNLKERDYNN---YGWQ 608
++E+RI TDAGR+CRPL I +N G L+LKK H IDN + +N +GW
Sbjct: 416 EKELRIFTDAGRVCRPLFIVDNNPESNSRGQLMLKKEHVQKIIDNKNRTELDNESKFGWS 475
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
LV +G+VEYID EEET MIAM
Sbjct: 476 SLVANGIVEYIDAEEEETVMIAM 498
>gi|82914537|ref|XP_728803.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
17XNL]
gi|23485337|gb|EAA20368.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii
yoelii]
Length = 1312
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 300/685 (43%), Positives = 434/685 (63%), Gaps = 45/685 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ +E WIVI ++F GLV QQ++S+++FI+ +Q I+++ P I+++ + Q+ + E
Sbjct: 33 ITEEDSWIVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPNIEIKPQPQYRPDKDEN 92
Query: 61 PPR-YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
Y LKF Q+ L +P EK+ + P EARLRNLTYS+ +Y+DI ++ E
Sbjct: 93 NNIIYSLKFGQLSLDRPFFDEKNLINKNLWPQEARLRNLTYSSAIYIDIEQSTYIVDENT 152
Query: 120 VTTQHQKSFI------GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
++ F+ G+IP+ML+S +C GL D D++++ EC LD GGYFI+NG EKV
Sbjct: 153 KKQILKEKFVYERINLGRIPLMLKSMFCWTKGLPDNDISDMGECSLDQGGYFIVNGGEKV 212
Query: 174 LIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
L+AQE+MA N +YVF K SK+ + EIRS +E S+ TS V M + G +
Sbjct: 213 LVAQERMANNFIYVFKKKHSSKFGWIAEIRSQME-KSQATSAFSVKMKTKSGSRGSGGSG 271
Query: 233 GQR---IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
++A LPYI+ EI + I+FRALG +DRDIL+ I+YD +D M+ ++K +L+E
Sbjct: 272 KSSGGLLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDLNDKMMINILKETLEECI 331
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
Q++ L++IG RG G ++++RI YA+E+L+KE+LPH+G E++K+YF+GYM+
Sbjct: 332 DYPTQDICLDYIGKRGPTVGASRDKRILYAKELLRKEVLPHMGTGPGVESRKSYFIGYMI 391
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+RLLLA LGR + DDRDH+ V+ Q+ ID K F
Sbjct: 392 NRLLLAELGRIKEDDRDHFGKKRLDIAGPLMASSFATYFRKMAKDVKRVLQRQIDNNKPF 451
Query: 384 NLELAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
++ AI++ IT G++Y LATGNWG K R GV+QVLNRLT++S LSHLRR+N+P
Sbjct: 452 DVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTP 511
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
+GR+GK+AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM ISVG+ + I EFL EW
Sbjct: 512 LGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEW 571
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E+L+E+ P + + K+F+NG WVG + L+ TL +LRR+ D I E SI+RD+
Sbjct: 572 GLESLDEVPPQLMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCD-ISPEASIVRDVN 630
Query: 563 DREIRIHTDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEY 618
+EI+I TD+GR RPL + +N L L K HI N + + Y W +Q G++EY
Sbjct: 631 SKEIKIFTDSGRAMRPLYVVKNVGGKNKLKLTKEHIKNATKYP-DKYNWDYFIQEGIIEY 689
Query: 619 IDTLEEETTMIAMWQVLVQSGVVEY 643
ID EEETTMI+M+ +++G Y
Sbjct: 690 IDCEEEETTMISMFIDDLKTGTGYY 714
>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
Length = 1185
Score = 570 bits (1469), Expect = e-159, Method: Compositional matrix adjust.
Identities = 305/675 (45%), Positives = 428/675 (63%), Gaps = 52/675 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED-SPQIDLQAEAQHT-STEVET 60
Q W +I YFDE GLV+QQ S++EFI +VQ ++ED QI++ A Q+ T+ +
Sbjct: 12 QPDTWEIIRKYFDENGLVQQQRASYNEFILQNVQEVIEDYKGQIEVIATPQYKPGTKQDY 71
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDIT---KTVVRQGE 117
+ + F ++ +++P E +G ++P ARLR LTYS L+VDIT V G
Sbjct: 72 KQKIQVDFGRVRIAQPNITEVEGRKERLLPYMARLRKLTYSCQLFVDITLRKYKVASDGS 131
Query: 118 EPVTT--QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
E + +H++ +GK+P+MLRS C L G ++D+ +L ECP D GGYF+INGSEKVL+
Sbjct: 132 EQLDNIDEHERVPLGKVPVMLRSEVCRLFGKYNKDIMDLKECPQDQGGYFVINGSEKVLL 191
Query: 176 AQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
AQE+ A N V+VF K+AY E+ S +E ++P STL++ + R + G
Sbjct: 192 AQERRANNLVFVFKKTLGKFAYVAEVGSQVEKGNKPPSTLYMKLWNRE----NNARFGAS 247
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV---IQ 292
++ LPY+++EIPI+IVFRALG +DR+ILEHI+Y+ D +MME ++PSLDEA +
Sbjct: 248 VVLTLPYVRKEIPIVIVFRALGIESDREILEHIVYNLKDVQMMEALRPSLDEAAQGKDLS 307
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
+ AL++IG R ++E RI++A +IL +E+LPH+G+++ TKK YFLGY+ +RL
Sbjct: 308 TREAALDYIGRRALGMTTSRENRIQHAHDILIRELLPHIGITEESLTKKQYFLGYVCNRL 367
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
L SLGRR+ DDRDHY R Q +D GK+ N+
Sbjct: 368 LACSLGRRQPDDRDHYGNKRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDNGKEVNMN 427
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKA---HQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
A K IT G++Y +ATGNWG K A R GVSQVL+RLTFA++LSHLRR N+PI
Sbjct: 428 TAFKQDFITKGIKYCMATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHLRRANTPI 487
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
G++GK+A+PRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG I+E L+
Sbjct: 488 GKEGKIAQPRQLHNTQWGVVCPAETPEGQACGLVKNLSLMTYVSVGGASQVIIELLQAGG 547
Query: 504 MENLEEIAPSAIADA---TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDI--IVSEVSII 558
ME LEE+A AI + +K+FVNG WVG+ DP+ L TLR+ RR+M I ++ EV +
Sbjct: 548 MEELEELASPAICASSRFSKVFVNGVWVGMTDDPDNLANTLREQRREMTIGGMIHEVGVA 607
Query: 559 RDIRDREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
RDI +RE+ I TD GR+ RPLLI E G L LK+ +I ++ + + W +++ G +
Sbjct: 608 RDIGERELFISTDYGRLMRPLLIVDKETGFLNLKRSNIIHMTQNEQTT--WSEILRKGFI 665
Query: 617 EYIDTLEEETTMIAM 631
EYID +EEET IAM
Sbjct: 666 EYIDVMEEETCYIAM 680
>gi|70952785|ref|XP_745537.1| DNA-directed RNA polymerase II second largest subunit, [Plasmodium
chabaudi chabaudi]
gi|56525891|emb|CAH75446.1| DNA-directed RNA polymerase II second largest subunit, putative
[Plasmodium chabaudi chabaudi]
Length = 727
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 302/682 (44%), Positives = 435/682 (63%), Gaps = 45/682 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE-TP 61
+E W+VI ++F GLV QQ++S+++FI+ +Q I+++ P I+++ + Q+ + E T
Sbjct: 33 EEDSWVVIGSFFGH-GLVNQQIESYNDFIEYRMQEIIDEHPHIEIKPQPQYRPDKDENTN 91
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
Y LKF Q+ L +P EK+ + P EARLRNLTYS+ +Y+DI ++ E
Sbjct: 92 IIYSLKFGQLSLDRPFFDEKNLVNKNLWPQEARLRNLTYSSAIYIDIEQSTYMIDETTKK 151
Query: 122 TQHQKSFI------GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
++ F+ G+IP+ML+S +C GL + D++++ EC LD GGYFI+NG EKVL+
Sbjct: 152 QILKEKFVYERINLGRIPLMLKSMFCWTKGLPENDISDMGECSLDQGGYFIVNGGEKVLV 211
Query: 176 AQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+MA N +YVF K SK+ + EIRS +E S+ TS V M + G S
Sbjct: 212 AQERMANNFIYVFKKKHSSKFGWIAEIRSQME-KSQATSGFSVKMKTKSGSRSGGSGRSS 270
Query: 235 R--IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
++A LPYI+ EI + I+FRALG +DRDIL+ I+YDF+D M+ +++ +L+E
Sbjct: 271 GGLLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKMMINIMRETLEECIDYP 330
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
Q++ L++IG RG G ++++RI YA+E+L+KE+LPH+G E+KK+YF+GYM++RL
Sbjct: 331 TQDICLDYIGKRGPTVGASRDKRILYAKELLRKEVLPHMGTGAGVESKKSYFIGYMINRL 390
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
LLA LGR + DDRDH+ VR Q+ ID K F++
Sbjct: 391 LLAELGRIKEDDRDHFGKKRLDIAGPLMASSFATYFRKMAKDVRRVLQRQIDNNKPFDVA 450
Query: 387 LAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
AI++ IT G++Y LATGNWG K R GV+QVLNRLT++S LSHLRR+N+P+GR
Sbjct: 451 GAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGR 510
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GK+AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM ISVG+ + I EFL EW +E
Sbjct: 511 EGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLE 570
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
+L+E+ P + + K+F+NG WVG + L+ TL +LRR+ D I E SI+RD+ +E
Sbjct: 571 SLDEVPPQLLNEKVKLFLNGKWVGCFNQIDNLIETLYELRRRCD-ISPEASIVRDVNSKE 629
Query: 566 IRIHTDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
I+I TD+GR RPL + +N L L K HI N + + Y W +Q G++EYID
Sbjct: 630 IKIFTDSGRAMRPLYVVKNVGGKNKLKLTKEHIRNATKYP-DKYNWDYFIQEGIIEYIDC 688
Query: 622 LEEETTMIAMWQVLVQSGVVEY 643
EEETTMI+M+ +++G Y
Sbjct: 689 EEEETTMISMFIDDLKTGTGYY 710
>gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Hydnum repandum]
Length = 887
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/490 (56%), Positives = 361/490 (73%), Gaps = 32/490 (6%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MA N VYVF+ + S ++ E+RS +E + ST+ V M R Q K
Sbjct: 1 SEKVLIAQERMAANHVYVFAKAQPSPISFLAEVRSAVEKGGKTISTMQVKMFHRNPQ--K 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
++G I A LPYI+ +IPI +VFRALG +DRDILEHI YD +D +M+EM+KP +DE
Sbjct: 59 TVSLGNVIRASLPYIRDDIPIWVVFRALGITSDRDILEHICYDTNDTQMVEMLKPCIDEG 118
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+ IG RG G++K++R++YA+EILQKEMLPHV + + E+KKA+F GYM
Sbjct: 119 FVIQEREVALDLIGKRGTTTGLSKDKRLRYAQEILQKEMLPHVSMGEGSESKKAFFFGYM 178
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA+L RRELDDRDH+ V + QK ++ KD
Sbjct: 179 IHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRHLQKCVETHKD 238
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN+ +A+K+ IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 239 FNISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTFASTLSHLRRCNTP 298
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
+GRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISVGS +P++EFL+EW
Sbjct: 299 LGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLQEW 358
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E+LEE A +A ATK+FVNG W+G+HRD L+ TLR+LRR+ D I SEVSI+RDIR
Sbjct: 359 GLESLEENA-NAHGSATKVFVNGVWMGVHRDAPNLVKTLRRLRRK-DDISSEVSIVRDIR 416
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN-YGWQVLVQSGVVEYIDT 621
++E+R++TDAGR+CRPL I EN LLLKK H++ L ++ + Y W LV+ GV+E +D
Sbjct: 417 EKELRLYTDAGRVCRPLFIVENQQLLLKKEHVNMLNDKSRTDPYKWTHLVKDGVIELLDA 476
Query: 622 LEEETTMIAM 631
EEET MI M
Sbjct: 477 EEEETVMICM 486
>gi|384096572|gb|AFH66782.1| RNA polymerase II second largest subunit, partial [Rhizidium
endosporangiatum]
Length = 911
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 281/491 (57%), Positives = 360/491 (73%), Gaps = 34/491 (6%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MATN VYVF+ + + Y++ EIRS E S+ STL++ MM G+
Sbjct: 1 SEKVLIAQERMATNHVYVFAKAQPATYSFSCEIRSLAERGSKVASTLFIKMMHAKGE--- 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K+A GQ I LPYIK ++PI IVFRALG VAD++I+E I YDF+D M+E+++P ++EA
Sbjct: 58 KAAGGQVIRTSLPYIKTDVPIFIVFRALGVVADQEIMEKICYDFNDHPMLELLRPCIEEA 117
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ Q VAL +IG RG GV++E+RIKYA++ILQKEMLPHVG ET+KAYF GYM
Sbjct: 118 FVIQSQEVALTWIGNRGNTIGVSQEKRIKYAQDILQKEMLPHVGTKAHTETRKAYFFGYM 177
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA+L RRE DDRDH+ V QK ++ ++
Sbjct: 178 IHRLLLAALERREFDDRDHFGKKRLDLAGALLSGLFRMLFRKLTKDVSRTLQKCMETNRN 237
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++ A+ II +GL+YSLATGNWG+Q KA QARAGV QVLNR TFAS+LSHLRR+N+P
Sbjct: 238 FNIKTAVDANIIKNGLKYSLATGNWGEQSKAMQARAGVGQVLNRYTFASTLSHLRRMNTP 297
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA I+VG P +EFLEEW
Sbjct: 298 IGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAVITVGCPTLPFVEFLEEW 357
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+MENLEE+ PS I DATK+F+NG WVG+HRDP+ L+ TLR+LRR++D + +EVSI+RD+
Sbjct: 358 TMENLEEVGPSTIPDATKVFLNGVWVGVHRDPDMLVNTLRELRRRVD-VNAEVSIVRDVA 416
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLK--KRHIDNLKERDYNNYGWQVLVQSGVVEYID 620
+ E+R++TDAGRICRPL I +N ++ LK K HI+ L +++ + L+ GV+ ID
Sbjct: 417 ENELRLYTDAGRICRPLFIVDNETMTLKLTKEHIERLNDKE-TPASFNDLLCEGVIGLID 475
Query: 621 TLEEETTMIAM 631
T EEET MIAM
Sbjct: 476 TEEEETIMIAM 486
>gi|296412295|ref|XP_002835860.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629656|emb|CAZ80017.1| unnamed protein product [Tuber melanosporum]
Length = 620
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/558 (51%), Positives = 371/558 (66%), Gaps = 69/558 (12%)
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV---------V 113
RY + F YLS+PT E DGS PM+P EARLRNLTYSAP+Y ++ K V +
Sbjct: 28 RYEIMFGPCYLSRPTMTEGDGSTQPMLPQEARLRNLTYSAPMYCELKKKVMARVRYEWDI 87
Query: 114 RQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
+ +E T K FIGK+P+ML+S LNECP D GGYF+INGSEKV
Sbjct: 88 EEEDEGAT----KVFIGKMPVMLKS--------------HLNECPYDQGGYFVINGSEKV 129
Query: 174 LIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S Y EIRS +E SR S++ + + ++G +
Sbjct: 130 LIAQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLFSKGE---ARGGY 186
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
I + LPYIK +IPI+IVFRALG V+D DIL H+ YD +D +M+EM+KP ++EAFVIQ
Sbjct: 187 NATIKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTQMLEMMKPCIEEAFVIQ 246
Query: 293 EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
++ VAL+FIG RG+ G+ KE+RI+YAR+I+QKE+LPH+ + ET+KA+FLGYMVHR+
Sbjct: 247 DREVALDFIGKRGSSQGINKEKRIRYARDIMQKELLPHISQEEGSETRKAFFLGYMVHRM 306
Query: 353 LLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLE 386
L +L RRE+DDRDH+ V Y +K ++ KDFNL
Sbjct: 307 LQCALERREVDDRDHFGKKRLDLAGPLLAGLFRTLWRKLTKDVYKYLEKCVETSKDFNLT 366
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
LA+K+ IT+GL+YSLATGNWG+QKKA ++AGVSQVLNR TFAS+LSHLRR N+PIGRD
Sbjct: 367 LAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRD 426
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+YI++G+ P+++FL ME
Sbjct: 427 GKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSNDMEL 486
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
LEE P +ATK+FVNG WVG HRDP L ++ +RRQ ++ EVSI
Sbjct: 487 LEEYEPQRSPNATKVFVNGVWVGTHRDPLMLAKVVQDVRRQ-GVVSHEVSIF-------- 537
Query: 567 RIHTDAGRICRPLLIAEN 584
TDAGR+CRPL + +N
Sbjct: 538 ---TDAGRVCRPLFVIDN 552
>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Taphrina deformans]
Length = 936
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 282/503 (56%), Positives = 357/503 (70%), Gaps = 47/503 (9%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+ A N V VF S +Y EIRS +E S+ S++ + + A K
Sbjct: 1 SEKVIIAQERSAANMVQVFRKAPPSPVSYLAEIRSAIEKGSKLISSMQIKLKA-----AK 55
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ GQ I A LPY+K +IPI+IVFRALG V DRDIL+HI YD D +M+EM+KP ++EA
Sbjct: 56 VGSTGQTIAATLPYVKTDIPIVIVFRALGVVPDRDILDHICYDAKDRQMLEMLKPCIEEA 115
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ VAL+FIG RG+ GVTKE+R++YA++ILQKEMLPH+ S+ ET+KA+FLGYM
Sbjct: 116 FVIQDREVALDFIGKRGSAIGVTKEKRLRYAQDILQKEMLPHITTSEGFETRKAFFLGYM 175
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
VHRLLL +L RR+ DDRDH+ +R Y K +D GK+
Sbjct: 176 VHRLLLCALERRDPDDRDHFGKKRIDLAGPLLAGLFRMLFKRLTKDIRQYMTKCVDSGKE 235
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K IT+GLRYSLATG WGDQKK AR GVSQVLNR T+AS+LSHLRR N+P
Sbjct: 236 FNLPLAVKHTTITNGLRYSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNTP 295
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+Y+SVGS +PI+EFLEEW
Sbjct: 296 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEEW 355
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME+LE+ PSA +TKIFVNG W+G+H DP L+ TLR LRR+ D I EVS++RDIR
Sbjct: 356 GMESLEDYNPSAGRPSTKIFVNGVWLGVHSDPGHLVKTLRSLRRKTD-ISPEVSVVRDIR 414
Query: 563 DREIRIHTDAGRICRPLLI---------AENGSLLLKKRHIDNL---KER--DYNNYGWQ 608
++E+R+ TDAGR+CRPL + +E GSL+LKK H+ + KE D +GW
Sbjct: 415 EKELRLFTDAGRVCRPLFVVHDDESAEKSEAGSLVLKKEHVQRMAYSKEHPEDDEKFGWA 474
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
++ +G+ EY+D EEET MIAM
Sbjct: 475 QVLSNGIAEYLDAEEEETVMIAM 497
>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Amanita phalloides]
Length = 917
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 282/507 (55%), Positives = 364/507 (71%), Gaps = 42/507 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R +
Sbjct: 1 SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----Q 56
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ ++G I A +PYIK ++PI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+
Sbjct: 57 ERSLGNVIKATIPYIKVDVPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDG 116
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +S+ E+KKAYF GYM
Sbjct: 117 FVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYM 176
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLL+A+L RRELDDRDH+ V Y K ++ K+
Sbjct: 177 IHRLLVAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLSKCVETHKE 236
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K + IT+GL+YSLATGNWGDQKK+ +AGVSQVLNR T+AS+LSHLRR N+P
Sbjct: 237 FNLALAVKHQTITNGLKYSLATGNWGDQKKSMSTKAGVSQVLNRYTYASTLSHLRRCNTP 296
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS +P++EFLEEW
Sbjct: 297 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEW 356
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E+LEE A SA+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR
Sbjct: 357 GLESLEENAHSAVP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIR 414
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEYI 619
+RE+R++TDAGR+CRPL I EN L L+K+H+ N D + + W+ LV+ G+VE +
Sbjct: 415 ERELRLYTDAGRVCRPLFIVENHQLALQKKHVRWLGNGSNDDGDVFRWEHLVKGGIVELL 474
Query: 620 DTLEEETTMIAM------WQVLVQSGV 640
D EEET MI+M L QSGV
Sbjct: 475 DAEEEETVMISMTPEDLETSRLQQSGV 501
>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
Length = 1138
Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust.
Identities = 305/658 (46%), Positives = 424/658 (64%), Gaps = 51/658 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQA-EAQHTSTEVETP 61
+E W +I ++FD+KGLVRQQLDSF++F+++ +Q I++++ I +++ S E E
Sbjct: 18 EENNWAIITSFFDQKGLVRQQLDSFNQFVKIKMQEIIDENSIISVKSIPTAGNSIEREIK 77
Query: 62 PRYLLKFEQI-YLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
L F QI L P + E DG+ S ++PNEARLR+LTY +++D+ K G E
Sbjct: 78 ----LYFGQISILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVKKAYYENGIEVD 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
++ + G +P+M++S C L L D+D L ECP D GGYFII G EKV++AQE++
Sbjct: 134 VSKTIRVPFGSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVIVAQERI 193
Query: 181 ATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
ATN V++F + + Y Y EIRS E S+ S SLK + I A
Sbjct: 194 ATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIF----------SLKVVKNLRVIRAS 243
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
+ +KQ+IP++I+FRALGF +D++IL +I YD +D E+ E + SL+EA IQ+Q AL+
Sbjct: 244 INLVKQDIPVLIIFRALGFNSDKEILSYIQYD-NDKELNEYLLNSLEEASCIQDQLSALD 302
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
FIG R A G K +RI +A++IL KE LPH+G +FCETKKAYFLGYM++++LL G+
Sbjct: 303 FIGKRSAPIGSPKSKRIDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGK 362
Query: 360 RELDDRDHYVR--------------------------MYAQKFIDRGKDFNLELAIKTKI 393
R++DDRDHY + Y QK ++ ++FNL + +K+ I
Sbjct: 363 RDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLLTETTKYLQKCVENNREFNLTIGLKSSI 422
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT G +Y+LATGNWG Q+KA RAGV+QVL+R F S+LSHLRRVN+PI ++GKLA PR
Sbjct: 423 ITQGFKYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLRRVNTPIEKEGKLAAPR 482
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
QLHNT WGMICP ETPEG A GLVKNL+LMAYISVG + I+E LEE +E LEEI
Sbjct: 483 QLHNTHWGMICPIETPEGHACGLVKNLSLMAYISVGKSSNQIIEILEELGVERLEEI--- 539
Query: 514 AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAG 573
TKI VNG W+G+ DP +++ L+K RR + I SE+SII DI++ EI+I++DAG
Sbjct: 540 EYIYGTKILVNGAWIGVTSDPVRIVQILKKFRRHGE-IDSEISIIFDIKENEIKINSDAG 598
Query: 574 RICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
R CRPL I EN LL+ K+ I++LK W L+++G +E +D EEE ++IAM
Sbjct: 599 RPCRPLFIVENNELLVNKQDIEDLKNIKIK---WDDLIKNGKIELLDIEEEEVSLIAM 653
>gi|70794980|gb|AAZ08464.1| RNA polymerase II second largest subunit [Nymphaea colorata]
Length = 431
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 278/432 (64%), Positives = 328/432 (75%), Gaps = 34/432 (7%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYSAPLYVD+TK V+++G EE V Q K FIGK+PIMLRS+YC
Sbjct: 3 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDSEELVEKQDFTKVFIGKVPIMLRSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
L +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E
Sbjct: 63 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVA
Sbjct: 123 VRSMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI YDF D +MMEM++PSL+EAFVIQ Q VAL++IG RG+ GVTKE+RIKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMEMLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTKEKRIKYAK 240
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLL 300
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
V+ Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 301 GGLFRMLFRKLTRDVKTYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 359
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A
Sbjct: 360 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQAC 419
Query: 475 GLVKNLALMAYI 486
GLVKNLALM YI
Sbjct: 420 GLVKNLALMVYI 431
>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
Length = 914
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 275/492 (55%), Positives = 358/492 (72%), Gaps = 39/492 (7%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MATN VYVF+ + S + EIRS +E + S V M R +
Sbjct: 1 SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----Q 56
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ ++ +PYIK +IPI +VFR LG ++DRDILEHI YD D +M+EM+KP +D+
Sbjct: 57 ERSVS---FTTIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDG 113
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM
Sbjct: 114 FVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYM 173
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA+L RRELDDRDH+ V Y QK ++ K+
Sbjct: 174 IHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKE 233
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P
Sbjct: 234 FNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTP 293
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW
Sbjct: 294 LGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEW 353
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E+LEE A S + TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR
Sbjct: 354 GLESLEENAHST-SPCTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIR 411
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEYI 619
++E+RI+TDAGR+CRPL I EN LLL KRHI ++ + + N Y W+ L++ GV+E +
Sbjct: 412 EKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIELL 471
Query: 620 DTLEEETTMIAM 631
D EEET MI+M
Sbjct: 472 DAEEEETVMISM 483
>gi|120561257|gb|ABM27013.1| RNA polymerase II second largest subunit, partial [Gigaspora
gigantea]
Length = 894
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 275/509 (54%), Positives = 356/509 (69%), Gaps = 43/509 (8%)
Query: 178 EKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
E+MATNTVYVF+ S Y+Y EIRS +E S+ S+L V M+A+ + +K + GQ I
Sbjct: 1 ERMATNTVYVFAKSPPSPYSYTAEIRSAMEKGSKLASSLTVKMLAK---TAEKGSTGQFI 57
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
A +PYIK+++P++I FRALG V+D+D L+++ YD +D +MME +KP ++EAF +Q V
Sbjct: 58 QATMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPNDNQMMEALKPCIEEAFAVQSTEV 117
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
A ++IG RG G T+++RIKYA+EILQKE+LPHV CE +KA+FLGYMVHRLLLA+
Sbjct: 118 AADWIGRRGTTTGATRDKRIKYAKEILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAA 177
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
LGRRELDDRDHY + +Y +K ID ++FNL LAIK
Sbjct: 178 LGRRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDISIYLRKCIDTSREFNLHLAIK 237
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
+ IT+GL+YSLATGNWGDQKKA Q+RAGVSQVLNR TFAS+LSHLRR N+P+GRDGK+A
Sbjct: 238 AQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIA 297
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL-EE 509
KPRQLHNT WGM+CPAETPEG A GLVKNL+LM+YISVGS PI++FLEE+ M NL ++
Sbjct: 298 KPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSSSKPIVDFLEEYGMINLNQQ 357
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
P+ I D TK+FVNG W GI PEQL TLR LRR +D+ EVS++RDIR++E+RI+
Sbjct: 358 FDPANIRDNTKVFVNGKWAGISTAPEQLANTLRGLRRSVDV-SPEVSVVRDIREKELRIY 416
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
TDAGR+CRPL I E+ L++ K IDNL + N E + +
Sbjct: 417 TDAGRVCRPLFIVEDQCLVISKELIDNLDDIHGEN-----------AEKQSQKRRQDRQV 465
Query: 630 AMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+W L+ +G +EYID EEET MI M+P
Sbjct: 466 YVWHDLISNGAIEYIDAEEEETVMICMTP 494
>gi|45545353|gb|AAS67524.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Usnea cornuta]
Length = 903
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 286/522 (54%), Positives = 357/522 (68%), Gaps = 49/522 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF S Y EIRS +E SR S++ + + +G S K
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAQSNTPYVAEIRSAVEKGSRLISSMQMKLYEKGEGS--K 58
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
GQ I LPYIK EIPI IVFRALG V+D DIL HI YD D +M+EM+KP ++EAF
Sbjct: 59 GGFGQTIKCTLPYIKTEIPIAIVFRALGVVSDEDILNHICYDRKDTQMLEMLKPCIEEAF 118
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ VAL+FIG RG GVT+++RIKYAR+I+QKE+LPH+ + ET+KA+FLGYMV
Sbjct: 119 VIQDREVALDFIGKRGNSQGVTRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLL +LGRRE+DDRDH+ V Y QK ++ K+F
Sbjct: 179 HRLLQCALGRREVDDRDHFGKKRLDLAGPLLASLFRGTFNKLTKDVYKYLQKCVENNKEF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N+ LA+K+ +T+GLRYSLATGNWGDQKKA +AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 NMTLAVKSTHLTNGLRYSLATGNWGDQKKAASVKAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ + +
Sbjct: 299 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIVDFMIQRN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATKIFVNG WVG+HRDP L+GT++ LRR+ +I EVS++RDIRD
Sbjct: 359 MEVLEEYEPLNSPNATKIFVNGVWVGVHRDPAHLVGTVQNLRRR-GLISHEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
RE ++ TDAGR+CRPL + +N G+L+L K H+ L E D N W
Sbjct: 418 REFKVFTDAGRVCRPLFVIDNDPRSSNRGNLVLTKDHVLKL-EMDREN--WATTEPD--- 471
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ EET M WQ LV+ GVVEY+D EEET MI M+P
Sbjct: 472 -----VREETDM--GWQGLVKEGVVEYVDAEEEETIMIVMTP 506
>gi|120561245|gb|ABM27007.1| RNA polymerase II second largest subunit, partial [Capniomyces
stellatus]
Length = 924
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/515 (53%), Positives = 357/515 (69%), Gaps = 40/515 (7%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG---QS 226
EKVLIAQE++ATNTV+VF + Y EIRS E +S+ S L++ +ARG
Sbjct: 1 GEKVLIAQERIATNTVFVFKKNVPQVHYTAEIRSVAERASKQASPLFLKKLARGKAGGGG 60
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
I A +PYI+ +IP+++VFRALG VA +DILEHI YD +D E++E K S++
Sbjct: 61 GSGGGSSGGIQATIPYIRSDIPVVVVFRALGMVAAKDILEHICYDGNDNELLEEFKGSIE 120
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E FVIQ++ V+L+FIG RG GV+KE+R+KYAREILQKE LPHVG ET+K YF G
Sbjct: 121 EGFVIQDKEVSLDFIGKRGTTVGVSKEKRVKYAREILQKEFLPHVGTQAHNETRKTYFFG 180
Query: 347 YMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRG 380
YM+HRLLL L RRE DDRDHY + Y QK ID
Sbjct: 181 YMIHRLLLCGLERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCIDSK 240
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
++FNL +A+K+ IT GL+YSLATGNWGDQKKA Q+R GVSQVLNR TFAS+LSHLRR N
Sbjct: 241 REFNLTMAMKSNTITAGLKYSLATGNWGDQKKAMQSRTGVSQVLNRYTFASTLSHLRRCN 300
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALMA+I+VG+ PIL FLE
Sbjct: 301 TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGTDSGPILLFLE 360
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW+MENLEE+A S+I D+TKIFVNG WVGIH++P +L+ TL++LRR+++ EVSI+RD
Sbjct: 361 EWAMENLEELAGSSINDSTKIFVNGVWVGIHKEPIRLVSTLKQLRRRLE-FSYEVSIVRD 419
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKER---DYNNYGWQVLVQSGVVE 617
+R++E+RI TD+GR+CRPL + N L + K I ++ R D W L+ G++E
Sbjct: 420 VREKELRILTDSGRVCRPLFVVNNSRLNINKDVIKAIEAREVSDVEAVRWHDLLSEGIIE 479
Query: 618 YIDTLEEETTMIAMW-------QVLVQSGVVEYID 645
Y+D EEET MI M ++ V++G+V ++
Sbjct: 480 YLDAEEEETAMIIMTPQELTESRLYVENGIVPAVE 514
>gi|120561265|gb|ABM27017.1| RNA polymerase II second largest subunit, partial [Coelomomyces
stegomyiae]
Length = 862
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/491 (56%), Positives = 350/491 (71%), Gaps = 41/491 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+ ATNTV+VF S Y+ EIRS E + S+ V M +
Sbjct: 1 SEKVIIAQERTATNTVFVFKKALPSPVEYQAEIRSQAETGPKTMSSFIVKMSRQ------ 54
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYI Q+IPI+IVFRALG + DRDILE I YDF+D +M+EM+KP +DEA
Sbjct: 55 -----HHITATLPYINQDIPIVIVFRALGLLTDRDILERICYDFNDHQMLEMLKPCIDEA 109
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
F + Q +AL+ IG RG G+T+ERRI+YA ++L++E+LPH+G + CET+K+YF+GYM
Sbjct: 110 FQVNTQELALDHIGKRGKNVGLTRERRIRYACDLLERELLPHIGTTPGCETRKSYFIGYM 169
Query: 349 VHRLLLASLGRRELDDRDHY---------------VRMYAQKF-----------IDRGKD 382
++RLL +LGRRE+DDRDH+ R + QK ++R +
Sbjct: 170 INRLLSTALGRREVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVGRYFTNCLERSRP 229
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL +AI + IT+GLRY+LATGNWGDQKK + RAGVSQVLNR TFAS+LSHLRR+N+P
Sbjct: 230 FNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTP 289
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS PI EFL EW
Sbjct: 290 IGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSIISVGSASEPIHEFLSEW 349
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ ENLEEI+PS I TK+FVNG W+GIHR+P+ L+ TL+ LRR D I SEVS++ DIR
Sbjct: 350 TTENLEEISPSTIGPNTKVFVNGAWIGIHREPDSLVKTLKTLRRATD-IDSEVSVVHDIR 408
Query: 563 DREIRIHTDAGRICRPLLIA-ENGSLLLKKRHIDNLKERDYNN-YGWQVLVQSGVVEYID 620
+ E+RI+TD GRICRPL + EN L+LKK HI L E D + +GW+ L+ +G+VEY+D
Sbjct: 409 ENELRIYTDPGRICRPLFVVNENQQLVLKKEHILKLSEEDEDAIWGWEKLLINGIVEYLD 468
Query: 621 TLEEETTMIAM 631
T EEET MI+M
Sbjct: 469 TEEEETVMISM 479
>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
Length = 899
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/486 (55%), Positives = 354/486 (72%), Gaps = 37/486 (7%)
Query: 177 QEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MATN VYVF+ + S + EIRS +E + S V M R ++ ++G
Sbjct: 1 QERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNV 56
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
+ A +PYI+ +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++
Sbjct: 57 MKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDRE 116
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +S+ E+KKAYF GYM+HRLLLA
Sbjct: 117 VALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLA 176
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+L RRELDDRDH+ V Y QK ++ K+FNL LA+
Sbjct: 177 ALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAV 236
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K + IT+GL+YSLATGNWGDQKKA ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+
Sbjct: 237 KHQTITNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKI 296
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE
Sbjct: 297 AKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEE 356
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++
Sbjct: 357 NAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLY 414
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEE 625
TDAGR+CRPL I EN L L+K+HI L +E D + W+ LV++G++E +D EEE
Sbjct: 415 TDAGRVCRPLFIVENQQLALQKKHIKWLNQGYREDDGEEFKWEQLVKNGIIELLDAEEEE 474
Query: 626 TTMIAM 631
T MI M
Sbjct: 475 TVMICM 480
>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Sphaerophorus globosus]
Length = 903
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/507 (55%), Positives = 349/507 (68%), Gaps = 48/507 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF S Y EIRS +E SR S + + + +G S K
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAQSNTPYVAEIRSAVERGSRLISGMQIKLYEKGEGS--K 58
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
GQ I LPYIK EIPI IVFRALG V+D DIL HI YD D +M+EM+KP ++EAF
Sbjct: 59 GGFGQTIKCTLPYIKTEIPIAIVFRALGIVSDEDILNHICYDRKDTQMLEMLKPCIEEAF 118
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ VAL+FIG RG GVT+++RIKYAR+I+QKE+LPH+ S+ ET+KA+FLGYMV
Sbjct: 119 VIQDREVALDFIGKRGNSQGVTRDKRIKYARDIMQKELLPHISQSEGTETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLL +LGRRE+DDRDH+ V Y Q+ ++ K+F
Sbjct: 179 HRLLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQRCVENNKEF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL LA+K+ +T+GL+YSLATGNWGDQKKA ++AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 NLTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ +
Sbjct: 299 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMVQRG 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
M+ LEE P +ATKIFVNG WVG+HRDP L+ T++ LRR+ + EVS++RDIRD
Sbjct: 359 MDLLEEYEPLNSPNATKIFVNGVWVGVHRDPAHLVSTVQNLRRRGH-LSHEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL------------KERDYNN 604
RE +I TDAGR+CRPL + +N G+L+L K HI L +ER+
Sbjct: 418 REFKIFTDAGRVCRPLFVIDNDPKSNNCGNLVLTKDHIAKLEEDKEMGMSMDAQEREDKL 477
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
GW LV+SGVVEY+D EEET MI M
Sbjct: 478 MGWTGLVKSGVVEYVDAEEEETIMIVM 504
>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
Length = 952
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 280/517 (54%), Positives = 357/517 (69%), Gaps = 50/517 (9%)
Query: 162 GGYFIINGSEKVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMM 220
GGYFIINGSEKVLIAQE+ A N V VF +S +Y EIRS LE SR S+L + +
Sbjct: 1 GGYFIINGSEKVLIAQERSAANIVQVFKKPANSAVSYLAEIRSALEKGSRLISSLQIKLY 60
Query: 221 ARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM 280
+G + + G+ + + LPYIK +IPI IVFRALG V+D DIL HI YD +D +M+EM
Sbjct: 61 DKGDSN--RGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEM 118
Query: 281 VKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK 340
+KP ++EAFVIQ++ VAL+FIG RG +T+++RIKYAR+I+QKE+LPH+ + ET+
Sbjct: 119 LKPCIEEAFVIQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETR 178
Query: 341 KAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQ 374
KA+FLGYMVH+LL +LGRRE DDRDH+ V Y Q
Sbjct: 179 KAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQ 238
Query: 375 KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLS 434
+ ++ ++FNL L +K+ IT+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LS
Sbjct: 239 RCVENNREFNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLS 298
Query: 435 HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP 494
HLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM Y++VG+ P
Sbjct: 299 HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDP 358
Query: 495 ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE 554
I+EF+ + +ME LEE P +ATK+FVNG WVGIHRDP L+ ++ LRR +I E
Sbjct: 359 IVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLVKCVQDLRRS-HLISHE 417
Query: 555 VSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL---------- 597
VS+IR+IRDRE +I TDAGR+CRPLL+ +N G+L+L K HI L
Sbjct: 418 VSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNKDHIRRLEDDQLLPANM 477
Query: 598 -KERDYNN--YGWQVLVQSGVVEYIDTLEEETTMIAM 631
K+ N YG+Q L+ GVVEY+D EEET MI M
Sbjct: 478 DKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITM 514
>gi|120561253|gb|ABM27011.1| RNA polymerase II second largest subunit, partial [Funneliformis
mosseae]
Length = 883
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/484 (55%), Positives = 348/484 (71%), Gaps = 34/484 (7%)
Query: 178 EKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
E+MATNTVYVF+ S ++Y EIRS +E S+ S+L + +MA+ + +K A GQ I
Sbjct: 1 ERMATNTVYVFTKSPPSPFSYTAEIRSAMEKGSKLASSLTIKLMAK---TAEKGATGQFI 57
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
A +PYIK+++P++I FRALG V+D+D L+++ YD D +M+E +KP ++EAF +Q V
Sbjct: 58 QATMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPSDHQMLEALKPCIEEAFAVQSMEV 117
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
A ++IG RG G T+++RIKYA++ILQKE+LPHV CE +KA+FLGYMVHRLLLA+
Sbjct: 118 AADWIGRRGTTTGATRDKRIKYAKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAA 177
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
LGRRELDDRDHY V +Y +K ID ++FNL LAIK
Sbjct: 178 LGRRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIK 237
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
+ IT+GL+YSLATGNWGDQKKA Q+RAGVSQVLNR TFAS+LSHLRR N+P+GRDGK+A
Sbjct: 238 AQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIA 297
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL-EE 509
KPRQLHNT WGM+CPAETPEG A GLVKNL+LM+YISVGS PI++FLEE+ M NL ++
Sbjct: 298 KPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINLNQQ 357
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
P+ I D TK+FVNG W GI PEQL TL+ LRR +D + EVS++RDIR+RE+RI+
Sbjct: 358 FDPANIKDNTKVFVNGKWAGISSSPEQLSYTLKGLRRTVD-VSPEVSVVRDIRERELRIY 416
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLK--ERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
TDAGR+CRPL I EN L + K I L + +GWQ L+ + V+EYID EEET
Sbjct: 417 TDAGRVCRPLFIVENERLRITKGLIQKLDVFKMKKMTFGWQDLISNSVIEYIDAEEEETV 476
Query: 628 MIAM 631
MI M
Sbjct: 477 MICM 480
>gi|120561255|gb|ABM27012.1| RNA polymerase II second largest subunit, partial [Funneliformis
mosseae]
Length = 883
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/484 (55%), Positives = 348/484 (71%), Gaps = 34/484 (7%)
Query: 178 EKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
E+MATNTVYVF+ S ++Y EIRS +E S+ S+L + +MA+ + +K A GQ I
Sbjct: 1 ERMATNTVYVFTKSPPSPFSYTAEIRSAMEKGSKLASSLTIKLMAK---TAEKGATGQFI 57
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV 296
A +PYIK+++P++I FRALG V+D+D L+++ YD D +M+E +KP ++EAF +Q V
Sbjct: 58 QATMPYIKKDVPVVIAFRALGAVSDQDFLQYVCYDPSDHQMLEALKPCIEEAFAVQSMEV 117
Query: 297 ALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
A ++IG RG G T+++RIKYA++ILQKE+LPHV CE +KA+FLGYMVHRLLLA+
Sbjct: 118 AADWIGRRGTTTGATRDKRIKYAKDILQKELLPHVSTEYGCEKRKAFFLGYMVHRLLLAA 177
Query: 357 LGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIK 390
LGRRELDDRDHY V +Y +K ID ++FNL LAIK
Sbjct: 178 LGRRELDDRDHYGKKRMDLAGPLLASLFRMLFKKLTKDVSIYLRKCIDSNREFNLNLAIK 237
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
+ IT+GL+YSLATGNWGDQKKA Q+RAGVSQVLNR TFAS+LSHLRR N+P+GRDGK+A
Sbjct: 238 AQTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIA 297
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL-EE 509
KPRQLHNT WGM+CPAETPEG A GLVKNL+LM+YISVGS PI++FLEE+ M NL ++
Sbjct: 298 KPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYISVGSASKPIIDFLEEYGMINLNQQ 357
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
P+ I D TK+FVNG W GI PEQL TL+ LRR +D + EVS++RDIR+RE+RI+
Sbjct: 358 FDPANIKDNTKVFVNGKWAGISSSPEQLSYTLKGLRRTVD-VSPEVSVVRDIRERELRIY 416
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLK--ERDYNNYGWQVLVQSGVVEYIDTLEEETT 627
TDAGR+CRPL I EN L + K I L + +GWQ L+ + V+EYID EEET
Sbjct: 417 TDAGRVCRPLFIVENERLRITKGLIQKLDVFKMKKMTFGWQDLISNSVIEYIDAEEEETV 476
Query: 628 MIAM 631
MI M
Sbjct: 477 MICM 480
>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
boomerangus]
Length = 906
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/491 (55%), Positives = 349/491 (71%), Gaps = 34/491 (6%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKV+IAQE++ATNTV+VF Y EIRS E +S+ S L++ + +G
Sbjct: 1 GEKVMIAQERIATNTVFVFKKNIPYPHYTAEIRSAAEKASKQASPLFLKITNKG----VS 56
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+G I A +PYI+ +IP+++VFRALG VA +DILEHI YD +D +M+E KPS++EAF
Sbjct: 57 KGLGGEIQASIPYIRSDIPVVVVFRALGMVAVKDILEHICYDGNDHQMLEKFKPSIEEAF 116
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ+++VAL+FIG RG GV+K++RIKY EILQKE LPHVG ET+K++F GYMV
Sbjct: 117 VIQDKDVALDFIGKRGTAVGVSKDKRIKYGAEILQKEFLPHVGTQAHNETRKSFFFGYMV 176
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
HRLLL +L RRE DDRDHY + Y QK ID ++F
Sbjct: 177 HRLLLCALERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCIDSKREF 236
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL +AIK+ IT GL+YSLATGNWGDQKK+ Q+R GVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 237 NLTMAIKSNTITAGLKYSLATGNWGDQKKSMQSRTGVSQVLNRYTFASTLSHLRRCNTPI 296
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALMA+I++G++ P+L FLEEW+
Sbjct: 297 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITIGAESGPLLLFLEEWA 356
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
MENLEE+ S I DATKIFVNG WVGIHRD +L+ TL ++RR++D + E+SI+RD+R+
Sbjct: 357 MENLEELTASNIPDATKIFVNGVWVGIHRDANRLVSTLLQMRRRLD-LSYELSIVRDVRE 415
Query: 564 REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN---YGWQVLVQSGVVEYID 620
+E+R+ TDAGR+ RPL + N L L K + ++ RD N+ W L+ G+VEY+D
Sbjct: 416 KELRLFTDAGRVSRPLFVVNNLRLNLTKDIVRAIEARDVNDPEAVRWHDLMVEGIVEYLD 475
Query: 621 TLEEETTMIAM 631
EEET MI M
Sbjct: 476 AEEEETAMICM 486
>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
Length = 899
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 268/486 (55%), Positives = 355/486 (73%), Gaps = 37/486 (7%)
Query: 177 QEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MATN VYVF+ + S + EIRS +E + S V M R ++ ++G
Sbjct: 1 QERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNV 56
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
+ A +PYI+ +IPI +VFRALG ++DRDILEHI YD D +M+E++KP +D+ FVIQ++
Sbjct: 57 MKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEVLKPCIDDGFVIQDRE 116
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA
Sbjct: 117 VALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLA 176
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+L RRELDDRDH+ V Y QK ++ K+FNL LA+
Sbjct: 177 ALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAV 236
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+
Sbjct: 237 KHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKI 296
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE
Sbjct: 297 AKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEE 356
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++
Sbjct: 357 NAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLY 414
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEE 625
TDAGR+CRPL I EN L L+K+HI L ++ D + W+ LV+SG++E +D EEE
Sbjct: 415 TDAGRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEFKWEQLVKSGIIELLDAEEEE 474
Query: 626 TTMIAM 631
T MI+M
Sbjct: 475 TVMISM 480
>gi|120561267|gb|ABM27018.1| RNA polymerase II second largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 886
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 278/494 (56%), Positives = 355/494 (71%), Gaps = 37/494 (7%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMA-RGGQSL 227
SEKVLIAQE+MA NT YVF+ S+Y Y EIRS E S+ STL++ M+A +GG
Sbjct: 1 SEKVLIAQERMAFNTCYVFAKAPPSQYTYSCEIRSQNESGSKLPSTLFIKMLAPKGG--- 57
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
K +GQ I LPYIK +IPI+IVFRALG V DRDILEH+ YDF+D +M+E++KPS++E
Sbjct: 58 -KGTLGQVIRTSLPYIKADIPIIIVFRALGIVTDRDILEHVCYDFNDHQMLELLKPSVEE 116
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ++ VAL+FIG RG + GV+K++RI+YA +IL KEMLPHV + +T+KA+F GY
Sbjct: 117 AFVIQDKEVALDFIGVRGTQMGVSKDKRIRYATDILTKEMLPHVSMESHHQTRKAFFFGY 176
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLLA+L RR LDDRDH+ V Y +K ++ G
Sbjct: 177 MIHRLLLAALERRPLDDRDHFGRKRLDLAGPLLSSLFRTLFRKLTTDVSRYTKKIVETGG 236
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL +A+K+ IT GL+YSLATGNWGDQKK A+AGVSQVLNR T+AS+LSHLRR+N+
Sbjct: 237 EFNLAMALKSATITKGLQYSLATGNWGDQKKFMSAKAGVSQVLNRYTYASTLSHLRRLNT 296
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LM++ISVG+ +L +L E
Sbjct: 297 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSHISVGNDAKIVLPYLGE 356
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ ME LE+I PS + ATK+F+NG W+GIH +PE L+ TLR LRR D I +E+SI+RD+
Sbjct: 357 FGMETLEDIQPSMLPKATKVFLNGQWLGIHHEPETLVKTLRDLRRSAD-ISTELSIVRDV 415
Query: 562 RDREIRIHTDAGRICRPLLIA-ENGSLLLKKRHIDNLK---ERDYNNYGWQVLVQSGVVE 617
D+E+R+ TD GRI RPLLI E+ L + K +L+ E + W L+ SG VE
Sbjct: 416 SDKEVRLQTDYGRIMRPLLIVKEDYHLAITKGMARDLRPDVETGASALVWGDLLSSGAVE 475
Query: 618 YIDTLEEETTMIAM 631
Y+DT EEET MIAM
Sbjct: 476 YLDTEEEETVMIAM 489
>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1239
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 303/689 (43%), Positives = 429/689 (62%), Gaps = 64/689 (9%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL----QAEAQHTSTEV 58
Q+ W VI +YF + GLV QQ+ SFD F+ S+Q I+ ++ Q+ + Q + E
Sbjct: 48 QDDAWTVIRSYFKQHGLVSQQISSFDRFVNFSLQEIISENGQLQIPYTPQYQLNKQQHET 107
Query: 59 ETPPRYLLKFEQIYL-SKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
+ Y ++F+Q + S P E+D + SP+ P+EAR+RNLTY+ ++VDIT + +
Sbjct: 108 DKDIVYEVQFKQASVNSYPRLQEEDDTYSPIFPHEARMRNLTYATEVFVDITLSKKELDK 167
Query: 118 E----PVTTQ-HQKS------------FIGKIPIMLRSTYCLLNGLTD-RDLTELNECPL 159
E P T Q HQK IGKIP+MLRS +C L+ L + + E +C
Sbjct: 168 EMIIDPKTGQRHQKVKQVMQEYDEARVTIGKIPVMLRSKFCQLHSLNQMQRMKEGKDCQY 227
Query: 160 DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVN 218
D GGYFIINGSEKV++AQE+MA N V VF K SKY++ EIRS E+S++P L +
Sbjct: 228 DQGGYFIINGSEKVIVAQERMANNQVNVFHKKPPSKYSWVAEIRSQAENSNKPPQQLLLF 287
Query: 219 MMAR--------GGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIY 270
+ +R G + S GQ I LP IK++IP++I+FRALG ++DR IL + +
Sbjct: 288 LKSRYKSSGPGFGQANHSTSKFGQSIYVSLPMIKEQIPLVILFRALGTISDRQILSRVCF 347
Query: 271 DF-DDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLP 329
D DDPEM E ++ SL+E+ ++ Q A+++I RG+ +E R+ Y + +L+ E LP
Sbjct: 348 DCPDDPEMGEALRASLEESKIVDTQEDAMDYIAKRGSAQPYIRENRLTYTKLMLESEFLP 407
Query: 330 HVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVR--------MYAQKF----- 376
H+ KK++FLGYMV++LL A LGR + DDRD+Y + + A F
Sbjct: 408 HISTLPQDMPKKSFFLGYMVNKLLKAFLGRIDEDDRDYYGKKRLDMAGSLLATNFRQLFR 467
Query: 377 -------------IDRGKD-FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422
ID GK+ L+ +IK IIT GLR +LATGNWG K + GV+Q
Sbjct: 468 NFTDTMRRILKHEIDSGKEQIVLQNSIKQDIITRGLRTALATGNWGRDKNGDVQKTGVAQ 527
Query: 423 VLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 482
VLNRLTFASSLSHLRR+N+PI + GKLAKPRQLHNT WGMICPAETPEGAA GLVKNLAL
Sbjct: 528 VLNRLTFASSLSHLRRLNTPIAKTGKLAKPRQLHNTHWGMICPAETPEGAACGLVKNLAL 587
Query: 483 MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLR 542
M ++SVGSQPS ++ LE+ ++ L+++ +IFVNG W G H +P+ L+ ++
Sbjct: 588 MTFVSVGSQPSYLISILEDLGVDRLDDMNQVGSGRQVRIFVNGNWFGTHANPDDLIKSML 647
Query: 543 KLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY 602
KLRR I E++I+RD++++EIR +TD+GR+ RPL I +N ++ LKK+HI L++ +Y
Sbjct: 648 KLRRTHQ-IPKEIAIVRDLQNKEIRFYTDSGRVQRPLFIVQNNNIKLKKKHISLLEKNEY 706
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N + ++ G+VE++D EEET MIAM
Sbjct: 707 N---FDDTIKEGLVEFLDVEEEETAMIAM 732
>gi|70794964|gb|AAZ08456.1| RNA polymerase II second largest subunit [Camellia japonica]
Length = 431
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/432 (62%), Positives = 324/432 (75%), Gaps = 34/432 (7%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQH-QKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYS+PLYVD+TK VV++G EE TQ K FIGK+PIMLRS+YC
Sbjct: 3 ASLFPKAARLRNLTYSSPLYVDVTKRVVKRGHDCEEVTETQEFTKVFIGKVPIMLRSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
L +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYA+ E
Sbjct: 63 CLYQTSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E +RP S ++V M++ S K + GQ I A LPYI+ EIPI++VFRALGFVA
Sbjct: 123 VRSMAESQNRPPSGMFVRMLST--TSAKGGSSGQYIRATLPYIRTEIPIVVVFRALGFVA 180
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI Y+F D +MM++++PSL+EAFVIQ Q VAL++IG RG+ GVT+++RI+YA+
Sbjct: 181 DKDILEHICYEFSDIQMMDLLRPSLEEAFVIQNQQVALDYIGKRGSTVGVTRDKRIRYAK 240
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQ+EMLPHVG ++CETKKAY+ GY++HRLLL LGRR DDRDHY
Sbjct: 241 EILQREMLPHVGTGEYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLL 300
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 301 GGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKSITSGLKYSLATGNWG-QANAA 359
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
RAGVSQVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG A
Sbjct: 360 GTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQAC 419
Query: 475 GLVKNLALMAYI 486
GLVKNLALM YI
Sbjct: 420 GLVKNLALMVYI 431
>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
Length = 1222
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 307/720 (42%), Positives = 439/720 (60%), Gaps = 100/720 (13%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEA-QHTSTEVETP 61
Q+ WI++ ++F E LVRQQLDSF+EFIQ ++Q I++D P I ++ E + S+E +
Sbjct: 12 QDDMWIILESFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKFKSSETKKS 71
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP-- 119
+ +L+F Q++LSKPT E++G+ ++PNEARLRNLTYS+PLY DI+ + EE
Sbjct: 72 LKLILRFGQLHLSKPTFIEENGTTHTLLPNEARLRNLTYSSPLYCDISTITLNITEELTG 131
Query: 120 ------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
+ HQK +G+IPIM++S +C+L+ L DL + ECP+DPGGYFIINGSEKV
Sbjct: 132 EIKENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGGYFIINGSEKV 191
Query: 174 LIAQEKMATNTVYVFSMKDS-------------KYAYKTEIRSCLEHSSRPTSTLWV--- 217
++ QE++A N VY+FS K++ Y E RS E S L V
Sbjct: 192 IVGQEQLAWNYVYIFSKKETTKNSSKLYFYTKKNLLYFAECRSVAEFGRWSPSLLTVKVC 251
Query: 218 -------NMMARGGQSLKKSAI----GQRIIAILPYIKQEIPIMIVFRALGFVADRDILE 266
N + + S SA+ G + AILP K++IP+ +F+ALGF + +IL
Sbjct: 252 ITVFPKKNKINKQSSSSTNSALHFYGGLYLRAILPLFKKDIPVTWIFKALGFENETEILR 311
Query: 267 HIIYDFDDPEMMEMVKPSLD-------EAFV----IQEQNVALNFIG---ARGARPGVTK 312
HI Y+ +D E++E ++ SL+ E F I +Q AL IG +RGA +
Sbjct: 312 HICYNDEDEELIESIRYSLEDDKLMASETFSNISSILDQETALAAIGQHISRGA-----Q 366
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
RIK+A E LQKE LPHVG+ E +K +F GY++++L+ +G+R DDRDHY
Sbjct: 367 SLRIKHAYETLQKEFLPHVGIGQGFELRKGFFFGYIINKLMATQIGKRATDDRDHYGHKR 426
Query: 369 ----------------------VRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATG 405
+R Q+ + GK+FN + IK +T G++Y+LATG
Sbjct: 427 LDVAGPLLSVLFRQLLGKVIKDLRTSLQRKSNLGKNFNQISDFIKPSFLTTGIQYALATG 486
Query: 406 NWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 465
NWG K+A +R GVSQVLNRL+F+S+LSHLRR+NSP G+DG L KPRQLHN+ WG+ICP
Sbjct: 487 NWGTDKQA--SRTGVSQVLNRLSFSSTLSHLRRLNSPSGKDGNLTKPRQLHNSHWGLICP 544
Query: 466 AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 525
AETPEG + GLV+NLAL A++++GS PI+EFLEE+ +ENL ++ + + KIFVNG
Sbjct: 545 AETPEGHSCGLVRNLALSAFVTIGSSTLPIMEFLEEFKIENLSDVKLEKLKFSYKIFVNG 604
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE-- 583
CW+GIH P L+ LRK RR + + E+SI DI+++EIRI TD+GRICRPL++
Sbjct: 605 CWIGIHDKPLNLVKNLRKGRR-LGFLREEISISFDIKEKEIRISTDSGRICRPLIVLNEK 663
Query: 584 -----NGS------LLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW 632
NG+ LLKK H+ +K ++ + L++ G+VE+ID EEE +I+M+
Sbjct: 664 LSKNTNGTEIKTFLPLLKKSHLSKIKNDP--SFSFHDLLKEGIVEFIDAEEEEICLISMF 721
>gi|6606137|gb|AAF19081.1|AF107809_1 DNA-dependent RNA polymerase II RPB140, partial [Peziza
quelepidotia]
Length = 927
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/501 (54%), Positives = 351/501 (70%), Gaps = 43/501 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S + EIRS +E SR S++ + M G+
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAPPSPTPFVAEIRSAVEKGSRLISSMQIKMF---GKMDS 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ GQ I + LPYIK +IP+ IVFRALG + D DIL H+ YD +D +M++M+KP L+EA
Sbjct: 58 RGGYGQTIKSTLPYIKSDIPVAIVFRALGVIPDEDILNHVCYDRNDVQMLDMLKPCLEEA 117
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ +AL+FIG RG+ GV K++R++YAREILQKE LPH+ + ET+KA+FLGYM
Sbjct: 118 FVIQKREIALDFIGRRGSSSGVAKDKRVRYAREILQKEFLPHISQKEGSETRKAFFLGYM 177
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
VH++LL +L R+E DDRDH+ V Y QK ++ ++
Sbjct: 178 VHQMLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRTLFKKLTKDVYKYLQKCVESSRE 237
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K+ IT+GL+YSLATGNWG+QKKA ARAGVSQVLNR TFAS+LSHLR N+P
Sbjct: 238 FNLTLAVKSTTITNGLKYSLATGNWGEQKKAASARAGVSQVLNRYTFASTLSHLRGTNTP 297
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+Y+SVGS PI++F+ +
Sbjct: 298 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSPADPIIDFMLQR 357
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ME LEE PS +ATKIFVNG WVGIHRDP ++ T++KLRRQ + I EVS+I+DIR
Sbjct: 358 NMEVLEEYEPSRSPNATKIFVNGVWVGIHRDPGFIVRTIQKLRRQ-NHIGHEVSLIQDIR 416
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE-----RDYNNYGWQVL 610
+RE +I TDAGRICRPL + +N G L+L+K HI+ L++ D YGWQ L
Sbjct: 417 NREFKIFTDAGRICRPLFVVDNDPASPRRGELVLQKHHIEKLEDDKDITDDEQRYGWQGL 476
Query: 611 VQSGVVEYIDTLEEETTMIAM 631
+ GVVEYID EEET MI M
Sbjct: 477 ISDGVVEYIDAEEEETVMIVM 497
>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 942
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 271/497 (54%), Positives = 354/497 (71%), Gaps = 42/497 (8%)
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MATN VYVF+ + S + EIRS +E + S V M R ++ ++G + A
Sbjct: 1 MATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNVMKA 56
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PYIK +IPI +VFR LG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL
Sbjct: 57 TIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVAL 116
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L
Sbjct: 117 DFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALE 176
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RRELDDRDH+ V Y QK ++ K+FNL LA+K +
Sbjct: 177 RRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQ 236
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKP
Sbjct: 237 TITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKP 296
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A
Sbjct: 297 RQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAH 356
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R++TDA
Sbjct: 357 SSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDA 414
Query: 573 GRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
GR+CRPL I EN L L+K+H+ N D + Y W+ LV+ G++E +D EEET MI
Sbjct: 415 GRVCRPLFIVENQQLALQKKHVKWLSNGLNDDGDEYKWEHLVKGGIIELLDAEEEETVMI 474
Query: 630 AMW------QVLVQSGV 640
+M L QSGV
Sbjct: 475 SMTPEDLENSRLQQSGV 491
>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
brevicollis]
Length = 904
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 282/497 (56%), Positives = 353/497 (71%), Gaps = 38/497 (7%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARG-GQSLK 228
SEKVLIAQEKMA NTVYVF KDSK+ + TE+RS +E S+RPTST+ V M+ G G +
Sbjct: 1 SEKVLIAQEKMAGNTVYVFEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKG 60
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
++ G+ I A LPYI+Q+IP++++FRALGF DR ILEHIIYDFDD EMME++KPSLDEA
Sbjct: 61 RATFGRVIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDEA 120
Query: 289 FVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FV+Q + VAL+ IG R A G++K+ R+++AR+ILQKEMLPH+GV CE KA+FLGY
Sbjct: 121 FVVQTREVALDLIGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGY 180
Query: 348 MVHRLLLASLGRRELDDRDHYVR----------------MYAQ----------KFIDRGK 381
MVHR L A+L RRELDDRDHY ++ Q ++R
Sbjct: 181 MVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRNH 240
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F + + +I+ GLRYSLATGNWGDQKKAH+ARAGVSQVLNRLTFAS+LSHLRR+NS
Sbjct: 241 KFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRRLNS 300
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PI R GK+AKPRQLHNT WG ICPAETPEG AVGLVKNL+LMA ++VGS +P+ + L
Sbjct: 301 PIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDLLGA 360
Query: 502 WSMENLEEI-APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
++ L+ + + SAI ATK+FVNG WVGIH P++L+ T+R++RR + SEVSI R+
Sbjct: 361 SGLDYLDRLPSRSAIKTATKVFVNGNWVGIHSHPDELVTTMRQMRRAHS-VASEVSIFRN 419
Query: 561 IRDREIRIHTDAGRICRPLLI-----AENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGV 615
IR+RE+ I TD+GR RPLLI A LK H+ L+ + W LVQ GV
Sbjct: 420 IREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRN---DQMSWTHLVQRGV 476
Query: 616 VEYIDTLEEETTMIAMW 632
VEYID EEETTMIAM+
Sbjct: 477 VEYIDVNEEETTMIAMY 493
>gi|300394768|gb|ADK11922.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
mollusca]
Length = 875
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 263/481 (54%), Positives = 348/481 (72%), Gaps = 37/481 (7%)
Query: 182 TNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
TN VYVF+ + S + EIRS +E + S V M R ++ ++G + A +
Sbjct: 1 TNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNVMKATI 56
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+ +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+F
Sbjct: 57 PYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDF 116
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RR
Sbjct: 117 IGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERR 176
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDH+ V Y QK ++ K+FNL LA+K + I
Sbjct: 177 ELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTI 236
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
T+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQ
Sbjct: 237 TNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 296
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+
Sbjct: 297 LHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSS 356
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR
Sbjct: 357 TP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGR 414
Query: 575 ICRPLLIAENGSLLLKKRHI----DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
+CRPL I EN L L+K+H+ ++ D Y W+ LV+ G++E +D EEET MI+
Sbjct: 415 VCRPLFIVENQQLALQKKHVKWLNQGFRDDDGEEYKWEQLVKGGIIELLDAEEEETVMIS 474
Query: 631 M 631
M
Sbjct: 475 M 475
>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
Length = 884
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/485 (54%), Positives = 350/485 (72%), Gaps = 36/485 (7%)
Query: 177 QEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MATN VYVF+ + + + EIRS ++ + S V M R ++ ++G
Sbjct: 1 QERMATNHVYVFAKAQPAPINFLAEIRSLVKKGGKTISQFQVKMFHRH----QERSLGNV 56
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
+ A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++
Sbjct: 57 MKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDRE 116
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +S+ E+KKAYF GYM+HRLLLA
Sbjct: 117 VALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHRLLLA 176
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+L RRELDDRDH V Y QK ++ K+FN+ + +
Sbjct: 177 ALERRELDDRDHLGKNRLDLAGPLLANLFRMLFRKFNRDVYRYLQKCVETHKEFNVSVGV 236
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+
Sbjct: 237 KHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKI 296
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E LEE
Sbjct: 297 AKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLETLEE 356
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
A SA TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R++
Sbjct: 357 NAHSATP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLY 414
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEET 626
TDAGR+CRPL I EN L+L+K+HI L D Y W+ L++ GV+E +D EEET
Sbjct: 415 TDAGRVCRPLFIVENQQLVLQKKHIKWLVRGTNDDGEEYKWEQLIKGGVIELLDAEEEET 474
Query: 627 TMIAM 631
MI+M
Sbjct: 475 VMISM 479
>gi|429961470|gb|ELA41015.1| DNA-directed RNA polymerase II subunit RPB2 [Vittaforma corneae
ATCC 50505]
Length = 573
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/560 (48%), Positives = 380/560 (67%), Gaps = 46/560 (8%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W +I++YF++KGLVRQQLDSFD+F+++ +Q IV+++PQI +Q+ S+ V R ++
Sbjct: 20 WTIISSYFEQKGLVRQQLDSFDQFVRVKMQEIVDENPQIIVQSTPTAGSSAVR---RMVI 76
Query: 67 KFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
KF QIY++KP + E DG + P+EAR+R+LTY+ +Y+D+TK V + E +
Sbjct: 77 KFGQIYVTKPPVYTESDGRSITLYPSEARIRDLTYACNIYIDVTKIVENEFGERDEHKFS 136
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
++ +G++PIMLRS+ C+L+GLT++D+ ++ ECP D GGYFI++GSEKV++AQE+MA+NT+
Sbjct: 137 RTSLGQLPIMLRSSCCILHGLTEKDIVQIGECPYDQGGYFIVSGSEKVIVAQERMASNTI 196
Query: 186 YVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII-AILPYI 243
++F + + Y + +EIRS E SR S + +M R+I A LP +
Sbjct: 197 HIFKKSQPAPYTHYSEIRSVPEKGSRTPSAFSIKVMR-----------NPRVIRASLPLV 245
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGA 303
KQ+IPI I++RALGF++DR+I+ HI +D DD + + PSL+EA V+Q+Q AL+FIG
Sbjct: 246 KQDIPIAIIYRALGFLSDREIISHINFDNDD-AIYSFLAPSLEEASVVQDQLTALDFIGK 304
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
R A G +++R+++AR +L KE LPH+G +FCETKKAYFLGYM+ + L L RRE+D
Sbjct: 305 RSAPVGSPRDKRVQFARNLLAKEFLPHIGTQEFCETKKAYFLGYMISKTLNVVLDRREVD 364
Query: 364 DRDH--------------------YVRMYA------QKFIDRGKDFNLELAIKTKIITDG 397
DRDH + ++ A QK I+ +DFN+ L IK+ IT G
Sbjct: 365 DRDHCGKKRMDLGGPLLASLFKMLFKKLCAETAKHMQKCIENSRDFNIALGIKSSTITQG 424
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
RY+LATGNWGDQ +A Q RAGV+QVLNR F S+LSHLRRVN+PI ++GKLAKPRQLHN
Sbjct: 425 FRYALATGNWGDQARAMQTRAGVAQVLNRYNFLSTLSHLRRVNTPIEKEGKLAKPRQLHN 484
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
T WG+ICPAETPEG A GLVKNL+LMAYISVG +PI+E LEE +E LEE+ S I
Sbjct: 485 THWGLICPAETPEGHACGLVKNLSLMAYISVGKSSAPIIEILEECGVERLEEV--SCIRG 542
Query: 518 ATKIFVNGCWVGIHRDPEQL 537
+ ++ W I P L
Sbjct: 543 TKYLLMDCGWASIPIQPNLL 562
>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
NIH/UT8656]
Length = 1263
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 311/711 (43%), Positives = 419/711 (58%), Gaps = 88/711 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP-- 61
E CW VI+++FD K L Q+DSF+ F++ +Q +V + + L AQ+ + P
Sbjct: 37 EDCWKVISSFFDIKKLASMQIDSFNHFMRSGLQDLVNEKGGVTLD-HAQNVDEDDPNPVV 95
Query: 62 -PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV------- 113
R+ +KF ++ LSKP E DG + MP+EARLR+LTY++P +V +T+
Sbjct: 96 IKRHEVKFGKVTLSKPNMVEGDGVTADCMPHEARLRSLTYASPAFVKMTRRTYYAKEKPW 155
Query: 114 -------------------RQGEEPVTTQHQKS-FIGKIPIMLRSTYCLLNG---LTDRD 150
R+G E +K +IGKIPIM+RS C L +RD
Sbjct: 156 DDAGVDEGVMREDGSQLYWREGTEEGDFDSEKEVYIGKIPIMVRSMTCHLMSDRFQDERD 215
Query: 151 LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSS 209
L ECP D GGYFIINGSEKVLIAQE+ A N V VF + + + EIRS ++ +
Sbjct: 216 LYAWGECPYDQGGYFIINGSEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGA 275
Query: 210 RPTSTLWVNMMAR--GGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEH 267
R S V + R G + K I I LPY+KQ+IP++IVFRAL V+D DILE
Sbjct: 276 RMMSQCTVKLFRRVDGPEGTK---IDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEK 332
Query: 268 IIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEM 327
I +D D EMM+M+ SL E IQ ++A +FI RG P + R K+A +ILQKE
Sbjct: 333 ICFDQSDKEMMDMLMGSLQEGQPIQGADLARDFIARRGNVPTLKSHERQKHATDILQKEF 392
Query: 328 LPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM---------------- 371
LPH+G +KA+FLGYMVHRLL +LGR E DDRDH +
Sbjct: 393 LPHIGQGPDATARKAFFLGYMVHRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQ 452
Query: 372 ----------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVS 421
Y QK ++ G+ N+ K IIT GL+YSLATGNWGDQKK +A+AGVS
Sbjct: 453 FDKAAKDFYRYMQKRVEAGQPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVS 512
Query: 422 QVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
QVL+R TF+S+LSHLRR N+PIGR+GK+AKPRQLHNT WG +CPAETPEG A GLVKNL+
Sbjct: 513 QVLSRYTFSSTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLS 572
Query: 482 LMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVG-IHRDPEQLMGT 540
LM+ ++ + +P++ ++ ++E LE+ P ATK+FV+G W I RDP++L+
Sbjct: 573 LMSMVTNSYETAPLVNYVLTKNVEALEDWEPRLNPKATKVFVDGVWFAVILRDPKRLVDD 632
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE-------NGSLLLKKRH 593
LR LRR+ + S+VS++ DIR++E +I D+GRI RPL + E +G+L+L K H
Sbjct: 633 LRMLRRR-GVFDSQVSLVWDIREKEFKISGDSGRIVRPLFVVETDRSSENHGNLVLNKEH 691
Query: 594 IDN------LKERDYNN-------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
I LKE D+ + +GW L+ SGVVEY+D EEET MI M
Sbjct: 692 IRKLDETTYLKENDFQDWNEQVKPFGWTELLASGVVEYLDAEEEETAMICM 742
>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta
vitellina]
Length = 930
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 267/503 (53%), Positives = 363/503 (72%), Gaps = 44/503 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+ A NTV VF+ S ++ E+RS +E SR S+L + ++ R Q
Sbjct: 1 SEKVIIAQERSAANTVQVFTKSAPSPLSHVAEVRSAVEKGSRLISSLQIKLL-RNPQKTS 59
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
S G+ I A LPYIK +I I+IVFRALG +ADR+ILEHI +D +D +M+E++KP ++EA
Sbjct: 60 VSN-GRLIKATLPYIKDDIDIVIVFRALGVLADREILEHICFDPNDHQMLELLKPCIEEA 118
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+++AL++IG RG G++++RRI++AREI+QKE+LPHV ++ E++KA+FLGYM
Sbjct: 119 FVIQEKDLALDYIGKRGQTTGLSRDRRIRHAREIMQKELLPHVSQTEGYESRKAFFLGYM 178
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
VHRLLL +L RRE DDRDH+ V Y QK ++ ++
Sbjct: 179 VHRLLLVALERREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLYKDVYRYMQKCVENNRE 238
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K IT GL+YSLATGNWG+QKKA QA+ GVSQVLNR TFAS+LSHLRR N+P
Sbjct: 239 FNLTLAVKAPTITQGLKYSLATGNWGEQKKAAQAKVGVSQVLNRYTFASTLSHLRRTNTP 298
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHN+ WG++CPAETPEG A GLVKNLALM+YISVG +P++EFLEEW
Sbjct: 299 IGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLALMSYISVGGPSAPLIEFLEEW 358
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME+LE+ +PS+ + TKIFVNG W+G+HRD L+ T+R LRR++D I E++I+RDIR
Sbjct: 359 GMESLEDYSPSSTPNTTKIFVNGVWLGVHRDAGSLVNTVRNLRRRVD-ISPEITIVRDIR 417
Query: 563 DREIRIHTDAGRICRPLLIAENGS-------LLLKKRHIDNLKER-------DYNNYGWQ 608
+RE+R+ TDAGR+ RPL I +N L+L+++H++ + E D+ + +
Sbjct: 418 ERELRLFTDAGRVMRPLFIVDNDEHSPRKNFLMLQRQHVETINEHKDNPEIPDHERWNFS 477
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
L+++G++EYID EEET MIAM
Sbjct: 478 KLIENGIIEYIDAEEEETAMIAM 500
>gi|70794962|gb|AAZ08455.1| RNA polymerase II second largest subunit [Camellia japonica]
Length = 417
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/417 (64%), Positives = 316/417 (75%), Gaps = 34/417 (8%)
Query: 86 SPMMPNEARLRNLTYSAPLYVDITKTVVRQG---EEPVTTQ-HQKSFIGKIPIMLRSTYC 141
+ + P ARLRNLTYSAPLYVD+TK V+++G EE TQ K FIGK+PIMLRS+YC
Sbjct: 3 ATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYC 62
Query: 142 LLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTE 200
L +++DLTEL ECP D GGYFIINGSEKVLIAQEKM+TN VYVF + +KYAY E
Sbjct: 63 TLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGE 122
Query: 201 IRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 260
+RS E +RP S+++V M++R S K + GQ I A LPYI+ EIPI+IVFRALGFVA
Sbjct: 123 VRSMAESQNRPPSSMFVRMLSR--TSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVA 180
Query: 261 DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAR 320
D+DILEHI YDF D +MME+++PSL+EAFVIQ Q VAL++IG RGA GVTKE+RIKYA+
Sbjct: 181 DKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGASVGVTKEKRIKYAK 240
Query: 321 EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------ 368
EILQKEMLPHVGV ++CETKKAY+ GY++HRLLL +LGRR DDRDHY
Sbjct: 241 EILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLL 300
Query: 369 --------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAH 414
VR Y QK +D GKD NL+ AIK K IT GL+YSLATGNWG Q A
Sbjct: 301 GGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWG-QANAA 359
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG
Sbjct: 360 GTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEG 416
>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1005
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/524 (51%), Positives = 353/524 (67%), Gaps = 51/524 (9%)
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPT 212
LNECP D GGYFIINGSEKVLIAQE+ A N V VF +Y+ EIRS LE SR
Sbjct: 4 LNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLI 63
Query: 213 STLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 272
S+L + + + Q+ K + + LPY+K+E+ + IVFRALG V+D DIL HI YD
Sbjct: 64 SSLQMRLHTKADQN--KGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDR 121
Query: 273 DDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHV 331
D +M+E ++P ++EAF IQ++ VAL++IG RG G+ + RIK A+E+LQKE+LPH+
Sbjct: 122 RDSQMLEALRPCIEEAFCIQDREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHI 181
Query: 332 GVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM-------------------- 371
++ CET+KA+FLGYMVH+LL LGRR+ DDRDH+ +
Sbjct: 182 SQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRL 241
Query: 372 ------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLN 425
Y ++ +D K F+L L IK +T+GL+YSLATGNWGDQKKA + AGVSQVLN
Sbjct: 242 TQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLN 301
Query: 426 RLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAY 485
R TF+S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM +
Sbjct: 302 RYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCF 361
Query: 486 ISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLR 545
+SVG+ PI+EF+ +ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LR
Sbjct: 362 VSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLR 421
Query: 546 RQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI----------AENGSLLLKKRHID 595
R+ +II EVS++RDIRDRE +I +DAGR+ RPL + E G L+L K HI
Sbjct: 422 RK-NIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIR 480
Query: 596 NLKE--------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L++ DY +GWQ L++SG +EY+D EEET MI M
Sbjct: 481 RLEQDKELGKYHEDY--FGWQGLLESGAIEYLDAEEEETAMICM 522
>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
ZW02.30]
Length = 896
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/477 (54%), Positives = 345/477 (72%), Gaps = 36/477 (7%)
Query: 185 VYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYI 243
VYVF+ + S ++ EIRS +E + S V + R ++ ++G + A +PYI
Sbjct: 1 VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRS----QERSLGNVMKATIPYI 56
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGA 303
K +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +DE FVIQ++ +AL++IG
Sbjct: 57 KVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGN 116
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
RG G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RR+LD
Sbjct: 117 RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLD 176
Query: 364 DRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDG 397
DRDH+ V Y QK ++ K+FNL LA+K IT+G
Sbjct: 177 DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNG 236
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
L+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHN
Sbjct: 237 LKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHN 296
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
T WGM+CPAETPEG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+
Sbjct: 297 THWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP- 355
Query: 518 ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICR 577
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TD GR+CR
Sbjct: 356 CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDPGRVCR 414
Query: 578 PLLIAENGSLLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
PL I EN LLL+KRHI+NL KE Y W L++ GV+E +D EEET MI M
Sbjct: 415 PLFIVENQQLLLQKRHIENLVRGKEDPEFEYKWDNLIKDGVIELLDAEEEETVMICM 471
>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
Length = 908
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 261/477 (54%), Positives = 345/477 (72%), Gaps = 37/477 (7%)
Query: 186 YVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIK 244
YVF+ + S + EIRS +E + S V M R ++ +G + A +PYI+
Sbjct: 1 YVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERTLGNIMKATIPYIR 56
Query: 245 QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGAR 304
+IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG R
Sbjct: 57 VDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREVALDFIGNR 116
Query: 305 GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDD 364
G G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RRELDD
Sbjct: 117 GTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDD 176
Query: 365 RDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGL 398
RDH+ V Y QK ++ K+FNL LA+K + IT+GL
Sbjct: 177 RDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGL 236
Query: 399 RYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNT 458
+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT
Sbjct: 237 KYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNT 296
Query: 459 LWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA 518
WGM+CPAETPEG A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+
Sbjct: 297 HWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-C 355
Query: 519 TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRP 578
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRP
Sbjct: 356 TKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRP 414
Query: 579 LLIAENGSLLLKKRHI----DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L I EN L L+K+HI ++ D + W+ LV++G++E +D EEET MI+M
Sbjct: 415 LFIVENQQLALQKKHIKWLNQGFRDDDGEEFKWEQLVKTGIIELLDAEEEETVMISM 471
>gi|45120566|gb|AAO64652.2| RNA polymerase II subunit RPB2, partial [Chondrostereum purpureum]
Length = 770
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/480 (54%), Positives = 351/480 (73%), Gaps = 36/480 (7%)
Query: 182 TNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
TN VYVF+ + S + EIRS +E + S V M R ++ ++G I A +
Sbjct: 1 TNHVYVFAKGQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRH----QERSMGNIIKATI 56
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+F
Sbjct: 57 PYIKVDIPIWVVFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDDGFVIQDREVALDF 116
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RG G++++RRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RR
Sbjct: 117 IGNRGTTTGLSRDRRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERR 176
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDH+ V Y QK ++ K+FNL LA+K + I
Sbjct: 177 ELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTI 236
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
T+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQ
Sbjct: 237 TNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 296
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+
Sbjct: 297 LHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSAPVIEFLEEWGLESLEENAHSS 356
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR
Sbjct: 357 TP-FTKVFVNGVWMGVHRDPANLVKTIKKLRRR-DDISHEVSVVRDIREKELRLYTDAGR 414
Query: 575 ICRPLLIAENGSLLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+CRPL I EN L+L+K+H++ + ++ + WQ LV+SG++E +D EEET MI+M
Sbjct: 415 VCRPLFIVENQQLVLQKKHVNWIAAGQDDTGEPFKWQNLVKSGLIELLDAEEEETVMISM 474
>gi|45120572|gb|AAO64666.2| RNA polymerase II subunit RPB2, partial [Lycoperdon pyriforme]
Length = 849
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 259/464 (55%), Positives = 340/464 (73%), Gaps = 35/464 (7%)
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
+ EIRS +E + S V M R ++ ++G + A +PYIK +IPI +VFR L
Sbjct: 1 FLAEIRSAVERGGKTISQFQVKMFHRN----QERSLGNVMKATIPYIKVDIPIWVVFRGL 56
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRI 316
G ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G+++ERRI
Sbjct: 57 GVISDRDILEHICYDMQDTQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRI 116
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------- 368
+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RRELDDRDH+
Sbjct: 117 RYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLA 176
Query: 369 ------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQ 410
V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQ
Sbjct: 177 GPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQ 236
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
KK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPE
Sbjct: 237 KKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPE 296
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 530
G A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG W+G+
Sbjct: 297 GQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGV 355
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLK 590
HRDP LM T++KLRR+ D I EVS++RDIR++E+RI+TDAGR+CRPL I EN LLL+
Sbjct: 356 HRDPANLMKTIKKLRRK-DDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQ 414
Query: 591 KRHIDNLK---ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K+HI L + + + Y W+ +++ GV+E +D EEET MI+M
Sbjct: 415 KKHIRWLNSGFDEEGSEYKWEQMIKGGVIELLDAEEEETVMISM 458
>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
sclerotiorum]
Length = 938
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/509 (52%), Positives = 348/509 (68%), Gaps = 50/509 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF + +Y EIRS LE SR S+L + + +G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPANQAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSG-- 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ G+ + + LPYIKQ+IPI IVFRALG V+D DIL HI YD +D +M+EM+KP ++EA
Sbjct: 59 RGGFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEA 118
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ VAL+FIG RG +T+++RIKYAR+I+QKE+LPH+ + ET+KA+FLGYM
Sbjct: 119 FVIQDREVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYM 178
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
VH+LL +LGRRE DDRDH+ V Y Q+ ++ ++
Sbjct: 179 VHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNRE 238
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL L +K+ IT+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 239 FNLTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTP 298
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM Y++VG+ PI+EF+ +
Sbjct: 299 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQR 358
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ME LEE P +ATK+FVNG WVG+HRDP L+ ++ LRR +I EVS+IR+IR
Sbjct: 359 NMEVLEEYEPLRAPNATKVFVNGVWVGVHRDPAHLVKCVQDLRRS-HLISHEVSLIREIR 417
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERD-------------Y 602
DRE +I TDAGR+CRPLL+ +N G+L+L K HI L++ +
Sbjct: 418 DREFKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNKDHIRRLEDDQSLPSNMDKDEKVHH 477
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YG+Q L+ GVVEY+D EEET MI M
Sbjct: 478 GYYGFQGLINDGVVEYLDAEEEETVMITM 506
>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Ustilago maydis]
Length = 887
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/494 (54%), Positives = 352/494 (71%), Gaps = 38/494 (7%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MA N VYVFS + + EIRS +E + ST+ V + +R K
Sbjct: 1 SEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRN----K 56
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ I A LPYI+ +IPI+IVFRALG V DR++L+HI YDF+D M+EM+KP ++EA
Sbjct: 57 EKTANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEA 116
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ+++VAL+FIG RG G+++ +R YA+EILQKEMLPH+ S+ TKKAYF GYM
Sbjct: 117 FVIQDRDVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYM 176
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA+L RRE+DDRDH+ V + QK ++ ++
Sbjct: 177 IHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEHRE 236
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
F+++ A+K+ IT+GLRYSLATGNWGDQKKA QA+AGVSQVLNR FAS+LSHLRR N+P
Sbjct: 237 FHIQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRTNTP 296
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ++VG+ +PI+EFLEE+
Sbjct: 297 IGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLEEF 356
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+++L ++ A A ATKIFVNG W+G H DP QL+ TLR LRR+ D I EVS++RDIR
Sbjct: 357 GLDSLVDMQ-LAHAKATKIFVNGVWMGTHDDPGQLVDTLRDLRRK-DDISHEVSVVRDIR 414
Query: 563 DREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKE---RDYNNYGWQVLVQSGVVE 617
+RE+RI+TDA R+ RP+ I + SLL+KKRH++ + + + W LVQ GV+E
Sbjct: 415 ERELRIYTDASRVLRPVFIVNPHDMSLLIKKRHVEMIGQPIPETGEEFRWTHLVQEGVIE 474
Query: 618 YIDTLEEETTMIAM 631
Y+D EEE+ +I M
Sbjct: 475 YLDAEEEESVLICM 488
>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
dolichaula]
Length = 882
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/468 (55%), Positives = 340/468 (72%), Gaps = 35/468 (7%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S + EIRS +E + S V M R ++ ++G + A +PYIK +IPI +V
Sbjct: 5 SPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNVMKATIPYIKVDIPIWVV 60
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FR LG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G+++
Sbjct: 61 FRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSR 120
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RRELDDRDH+
Sbjct: 121 ERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKR 180
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K + IT+GL+YSLATGN
Sbjct: 181 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 240
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPA
Sbjct: 241 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 300
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S TK+FVNG
Sbjct: 301 ETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSTTP-CTKVFVNGV 359
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+RI+TDAGR+CRPL I EN
Sbjct: 360 WMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQ 418
Query: 587 LLLKKRHIDNLK---ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LLL+K+HI L + + N Y W+ L++ GV+E +D EEET MI+M
Sbjct: 419 LLLQKKHIRWLNSSFDEEGNEYKWEQLIKGGVIELLDAEEEETVMISM 466
>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis
crispa]
Length = 900
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/480 (54%), Positives = 345/480 (71%), Gaps = 40/480 (8%)
Query: 186 YVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIK 244
YVF+ + S ++ EIRS +E + S V + R ++ ++G + A +PYIK
Sbjct: 1 YVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRN----QERSLGNVMKASIPYIK 56
Query: 245 QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGAR 304
+IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG R
Sbjct: 57 VDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNR 116
Query: 305 GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDD 364
G G+ +ERR++YA+EILQKEMLPH+ +++ E+KKAYF GYM+HRLLLA+L RR+LDD
Sbjct: 117 GTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRDLDD 176
Query: 365 RDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGL 398
RDH+ V Y QK ++ K+FNL LA+K+ IT+GL
Sbjct: 177 RDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLNLAVKSNTITNGL 236
Query: 399 RYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNT 458
+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT
Sbjct: 237 KYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNT 296
Query: 459 LWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA 518
WGM+CPAETPEG A GLVKNL+LMA ISVGS +P++EFLEEW +E+LEE A SA
Sbjct: 297 HWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSATP-C 355
Query: 519 TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRP 578
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRP
Sbjct: 356 TKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRP 414
Query: 579 LLIAENGSLLLKKRHIDNL-------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L I EN LLL K+HID L K + Y W L++SGV+E +D EEET MI M
Sbjct: 415 LFIVENQQLLLTKKHIDLLNRSAEEEKALPGSGYKWDNLIKSGVIELLDAEEEETVMICM 474
>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
Length = 927
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/501 (53%), Positives = 349/501 (69%), Gaps = 44/501 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S Y EIRS +E SR S++ + + ++G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKGE---A 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ I + LPYIK +IPI+IVFRALG V+D DIL H+ YD +D +M+EM+KP ++EA
Sbjct: 58 RGGYNATIKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTQMLEMMKPCIEEA 117
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ VAL+FIG RG+ G+ KE+RI+YAR+I+QKE+LPH+ S+ ET+KA+FLGYM
Sbjct: 118 FVIQDREVALDFIGKRGSSQGINKEKRIRYARDIMQKELLPHISQSEGSETRKAFFLGYM 177
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
VHR+L +L RRE+DDRDH+ V Y +K ++ GKD
Sbjct: 178 VHRMLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVETGKD 237
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K+ IT+GL+YSLATGNWG+QKKA ++AGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 238 FNLTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTP 297
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+YI++G+ P+++FL
Sbjct: 298 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDFLSSN 357
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LEE P +ATK+FVNG WVG HRDP L ++ +RRQ ++ EVSIIRDIR
Sbjct: 358 DMELLEEYEPQRSPNATKVFVNGVWVGTHRDPLMLHKVVQDVRRQ-GVVNHEVSIIRDIR 416
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY-----NNYGWQVL 610
DRE +I TDAGR+CRPL + +N G L+L+K HI+ L E D+ + +GW+ L
Sbjct: 417 DREFKIFTDAGRVCRPLFVIDNDPRSERRGQLVLQKEHIEKL-EDDHALPMEDRFGWEGL 475
Query: 611 VQSGVVEYIDTLEEETTMIAM 631
+ G VEY+D EEET MI M
Sbjct: 476 LFGGTVEYLDAEEEETVMIVM 496
>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon
septentrionalis]
Length = 886
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/498 (53%), Positives = 352/498 (70%), Gaps = 40/498 (8%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S ++ EIRS +E + S V + R ++ ++G + A +PYIK +IPI +V
Sbjct: 8 SPVSFLAEIRSAVEKGGKTISQFQVKLYHRN----QERSMGNVLKATIPYIKVDIPIWVV 63
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ +AL+FIG RG G+ +
Sbjct: 64 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTTTGLNR 123
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERR++YA+EILQKEMLPH+ +++ E+KKAYF GY +HRLLLA+L RR+LDDRDH+
Sbjct: 124 ERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYRIHRLLLAALERRDLDDRDHFGKKR 183
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K IT+GL+YSLATGN
Sbjct: 184 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 243
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPA
Sbjct: 244 WGDQKKMMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 303
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG
Sbjct: 304 ETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGV 362
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN
Sbjct: 363 WMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQ 421
Query: 587 LLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ---VLVQSGVVEY 643
L + K+HI L +++ + Y W L++ GV+E +D EEET MI M L ++G
Sbjct: 422 LTITKKHISQLSDKE-SGYKWDDLIKGGVIELLDAEEEETVMICMTPEDLELARNG---- 476
Query: 644 IDTLEEETTMIAMSPRLK 661
ID L+++ I MS RLK
Sbjct: 477 IDPLQQDAADIDMSVRLK 494
>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
Length = 807
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 261/325 (80%), Positives = 278/325 (85%), Gaps = 26/325 (8%)
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MVHRLLLA+LGRRELDDRDHY VR+YAQKFIDRGK
Sbjct: 1 MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK 60
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
DFNLELAIKT+II+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NS
Sbjct: 61 DFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNS 120
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEE
Sbjct: 121 PIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEE 180
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
WSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDI
Sbjct: 181 WSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDI 240
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
R+REIRI+TDAGRICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDT
Sbjct: 241 REREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDT 300
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDT 646
LEEET M+AM +Q V Y T
Sbjct: 301 LEEETVMLAMTPDDLQEKEVAYCST 325
>gi|300394774|gb|ADK11925.1| DNA-directed RNA polymerase II subunit two, partial [Boletopsis
leucomelaena]
Length = 549
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/482 (54%), Positives = 345/482 (71%), Gaps = 36/482 (7%)
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MATN VYVF+ + S ++ EIRS +E + S V + RG + ++G + A
Sbjct: 1 MATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRGXER----SLGNIMKA 56
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL
Sbjct: 57 TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDVQMLEMLKPCIDDGFVIQDREVAL 116
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+FIG RG G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA++
Sbjct: 117 DFIGNRGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFXGYMIHRLLLAAME 176
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RREL DRDH+ V Y QK ++ K+FNL LA+K
Sbjct: 177 RRELXDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVEAHKEFNLXLAVKHN 236
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+ SHLRR N+P+GR+GK+AKP
Sbjct: 237 TITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTXSHLRRCNTPLGREGKIAKP 296
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
QLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A
Sbjct: 297 XQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAH 356
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDA
Sbjct: 357 SSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDA 414
Query: 573 GRICRPLLIAENGSLLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
GR+CRPL I EN L L+K+HI+ L ++ Y W LV+ GV+E +D EEET MI
Sbjct: 415 GRVCRPLFIVENQQLALRKKHIEWLNRGQDEAGEEYKWDQLVKGGVIELLDAEEEETVMI 474
Query: 630 AM 631
M
Sbjct: 475 CM 476
>gi|45120564|gb|AAO64650.2| RNA polymerase II subunit RPB2, partial [Bondarzewia montana]
Length = 867
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/486 (54%), Positives = 347/486 (71%), Gaps = 37/486 (7%)
Query: 177 QEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MA N VYVF+ + S + EIRS +E + S V M R S +K++ G
Sbjct: 1 QERMARNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYHR---SQEKTS-GNV 56
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
+ A +PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++
Sbjct: 57 MKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDRE 116
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
+AL+FIG RG G+++ERR++YA+EILQKEMLPH+ + + E+KKAYF GYM+HRLLLA
Sbjct: 117 IALDFIGNRGTTTGLSRERRLRYAQEILQKEMLPHISMMEGSESKKAYFFGYMIHRLLLA 176
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
++ RRELDD DH+ V Y QK ++ K+FNL LA+
Sbjct: 177 AMERRELDDXDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAV 236
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR GK+
Sbjct: 237 KHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGRXGKI 296
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA ISVGS P+++FLEEW +E+LEE
Sbjct: 297 AKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSPSGPVIDFLEEWGLESLEE 356
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
A SA TKIFVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++
Sbjct: 357 NAHSATP-TTKIFVNGIWMGVHRDPANLISTIKKLRRK-DDIHPEVSVVRDIRERELRLY 414
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEE 625
TD GR+CRPL I E+ L L+K+HI L ++ D + W L+++GVVE +D EEE
Sbjct: 415 TDPGRVCRPLFIVEDQQLALQKKHIXWLNQGWRDDDGTPFKWNSLIKNGVVELLDAEEEE 474
Query: 626 TTMIAM 631
T MI M
Sbjct: 475 TVMICM 480
>gi|432118317|gb|ELK38079.1| DNA-directed RNA polymerase II subunit RPB2 [Myotis davidii]
Length = 602
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/392 (69%), Positives = 296/392 (75%), Gaps = 80/392 (20%)
Query: 281 VKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETK 340
VKPSLDEAFVIQEQNVALNFIG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDF ETK
Sbjct: 7 VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFSETK 66
Query: 341 KAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQ 374
KAYFLGYMVHR+L A+LGRRELDDRDHY VR+YAQ
Sbjct: 67 KAYFLGYMVHRVLQAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ 126
Query: 375 KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLS 434
KFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LS
Sbjct: 127 KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS 186
Query: 435 HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP 494
HLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSP
Sbjct: 187 HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP 246
Query: 495 ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE 554
ILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDI
Sbjct: 247 ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDI---- 302
Query: 555 VSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSG 614
+++E+ LV SG
Sbjct: 303 -------------------------IVSED-------------------------LVVSG 312
Query: 615 VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
VVEY+DTLEEET M+AM +Q V Y T
Sbjct: 313 VVEYVDTLEEETVMLAMTPNDLQEKGVAYCST 344
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 22/24 (91%)
Query: 635 LVQSGVVEYIDTLEEETTMIAMSP 658
LV SGVVEY+DTLEEET M+AM+P
Sbjct: 308 LVVSGVVEYVDTLEEETVMLAMTP 331
>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/494 (54%), Positives = 347/494 (70%), Gaps = 40/494 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLI QE+MATN V+VF+ K + Y Y EIRS E +S+ STL++ MMA G
Sbjct: 1 SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMMAPKGD--- 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+GQ I LPYIKQ++PI++VFRALG ++D++I+E I YDFDD M+E++KP ++EA
Sbjct: 58 ---MGQVIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEA 114
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
F IQ + VAL++IG RG G TKE+RIKYA +ILQKEMLPHVG ET+KAYF GYM
Sbjct: 115 FPIQTREVALDYIGRRGQSVGATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYM 174
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA++ RR+ DDRDH+ + QK ++ K
Sbjct: 175 IHRLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKA 234
Query: 383 FN---LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
FN LE ++ ++ +GL+YSLATGNWGDQ KA QARAGVSQVLNR TFAS+LSHLRR+
Sbjct: 235 FNIQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRL 294
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
NSP RDGKLAKPRQLHNT WGM+CPAETPEG A GLVKN++LMA I+VG+ P +E L
Sbjct: 295 NSPTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHL 354
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EE SME LEE+ PS + DATK+F+NG W+G+HR+PE L+ LR RR + + EVSI+
Sbjct: 355 EELSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENLVENLRSTRRNCE-VSPEVSIVH 413
Query: 560 DIRDREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVE 617
D+ + E+R++TDAGRI RPL I E+ LL+++ H+ L++ + + + L+ GVVE
Sbjct: 414 DVTECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDPE-TDATFVDLLSEGVVE 472
Query: 618 YIDTLEEETTMIAM 631
YIDT EEET MIAM
Sbjct: 473 YIDTEEEETAMIAM 486
>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/494 (54%), Positives = 347/494 (70%), Gaps = 40/494 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLI QE+MATN V+VF+ K + Y Y EIRS E +S+ STL++ MMA G
Sbjct: 1 SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMMAPKGD--- 57
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+GQ I LPYIKQ++PI++VFRALG ++D++I+E I YDFDD M+E++KP ++EA
Sbjct: 58 ---MGQVIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEA 114
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
F IQ + VAL++IG RG G TKE+RIKYA +ILQKEMLPHVG ET+KAYF GYM
Sbjct: 115 FPIQTREVALDYIGRRGQSVGATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYM 174
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRLLLA++ RR+ DDRDH+ + QK ++ K
Sbjct: 175 IHRLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKA 234
Query: 383 FN---LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
FN LE ++ ++ +GL+YSLATGNWGDQ KA QARAGVSQVLNR TFAS+LSHLRR+
Sbjct: 235 FNIQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRL 294
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
NSP RDGKLAKPRQLHNT WGM+CPAETPEG A GLVKN++LMA I+VG+ P +E L
Sbjct: 295 NSPTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHL 354
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EE SME LEE+ PS + DATK+F+NG W+G+HR+PE L+ LR RR + + EVSI+
Sbjct: 355 EELSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENLVENLRSTRRNCE-VSPEVSIVH 413
Query: 560 DIRDREIRIHTDAGRICRPLLIA--ENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVE 617
D+ + E+R++TDAGRI RPL I E+ LL+++ H+ L++ + + + L+ GVVE
Sbjct: 414 DVTECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDPE-TDATFVDLLSEGVVE 472
Query: 618 YIDTLEEETTMIAM 631
YIDT EEET MIAM
Sbjct: 473 YIDTEEEETAMIAM 486
>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
Length = 878
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/480 (54%), Positives = 346/480 (72%), Gaps = 36/480 (7%)
Query: 182 TNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
TN VYVF+ + S + EIRS +E + S V M R ++ ++G + A +
Sbjct: 1 TNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNVMKATI 56
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+F
Sbjct: 57 PYIKVDIPIWVVFRALGVISDRDILEHICYDLQDSQMLEMLKPCIDDGFVIQDREVALDF 116
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RG G+++ERRI+YA+EILQKEMLPHV + + E +KA+F GYM+HRLLLA+L RR
Sbjct: 117 IGNRGTTTGLSRERRIRYAQEILQKEMLPHVAMKEGSEYQKAHFFGYMIHRLLLAALERR 176
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDH+ V Y QK ++ K+FNL LA+K + I
Sbjct: 177 ELDDRDHFGKKRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTI 236
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
T+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQ
Sbjct: 237 TNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 296
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNT WGM+CPAETPEG A GLVKNLALMA ISVGS +P +EFLEEW +E+LEE + S
Sbjct: 297 LHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSIAAPGIEFLEEWGLESLEEHSHSP 356
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
A +TKIFVNG W+G+HRDP L+ TL+KLRR+ D I E+SI+RDIR++E+R+++DAGR
Sbjct: 357 -APSTKIFVNGVWIGVHRDPANLVKTLKKLRRK-DDISPEISIVRDIREKELRVYSDAGR 414
Query: 575 ICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+CRPL I EN L+L+KRH+ +N + + W L++ G++E +D EEET MI+M
Sbjct: 415 VCRPLFIVENQRLILQKRHVRWLNNGINDEGEEFKWDRLIKGGIIELLDAEEEETVMISM 474
>gi|45120582|gb|AAO64686.2| RNA polymerase II subunit RPB2, partial [Coltricia perennis]
Length = 803
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 270/527 (51%), Positives = 363/527 (68%), Gaps = 52/527 (9%)
Query: 177 QEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+MATN VYVF+ + S ++ EIRS +E + S V M RG ++ A G
Sbjct: 1 QERMATNQVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMYHRG----QERASGNV 56
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
I A +PYIK +IPI ++FRALG ++DRDILEHI +D +DP+M+EM+KP +D+ FVIQ++
Sbjct: 57 IKATIPYIKVDIPIWVLFRALGVISDRDILEHICFDMNDPQMLEMLKPCIDDGFVIQDRE 116
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
+AL+FIG RG G+++E+RI+YA+EILQKEMLPH+ +S+ E+KKAYFLGYM+HRLLLA
Sbjct: 117 IALDFIGNRGTATGLSREKRIRYAQEILQKEMLPHISMSEGSESKKAYFLGYMIHRLLLA 176
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+L RRELDDRDH+ V Y QK ++ ++FN+ LA+
Sbjct: 177 ALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYRYLQKCVESHREFNINLAV 236
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
KT +IT+GL+YSLATGNWGDQKKA +AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+
Sbjct: 237 KTNVITNGLKYSLATGNWGDQKKAMTTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKI 296
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISVGS + ++ FLEEW +E+LEE
Sbjct: 297 AKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMASISVGSSSALVIXFLEEWGLESLEE 356
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
S + TK+FVNG W+G+HR+P L+ TLR +RR+ DI +EVSI+ D R+RE+RI
Sbjct: 357 NVQST--NLTKVFVNGVWLGVHREPTNLVRTLRMMRRREDI-STEVSIVHDTRERELRIQ 413
Query: 570 TDAGRICRPLLIAENGSLLLKKRHI----------------DNLKERDYNNYGWQVLVQS 613
TDAGR+ RPL I EN L L+ +H+ D+ KE +Y + G V+ ++
Sbjct: 414 TDAGRVLRPLFIVENHKLNLRPQHLRWLQAGSRIETRPYIPDDEKEAEYQSDGETVVDEN 473
Query: 614 GVVEYID--TLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ ID + ++ ++ LV V+EY+D EEET MI M+P
Sbjct: 474 TGEKAIDVENMTKKKVKPYGFKGLVTDSVIEYLDAEEEETVMICMTP 520
>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
Length = 938
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 273/511 (53%), Positives = 347/511 (67%), Gaps = 54/511 (10%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S Y EIRS LE SR S+L + + ++G +
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPPSPTPYVAEIRSALEKGSRLISSLTIKLHSKGDN--Q 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ + G I + LPYIK +IP+ IVFRALG V+D DIL HI YD +D +M+EM+KP ++EA
Sbjct: 59 RGSFGATIKSTLPYIKADIPMGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEA 118
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ VAL++IG RG G+T+++RIKYAR+I+QKE+LPH+ + ET+KA+FLGYM
Sbjct: 119 FVIQDREVALDYIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYM 178
Query: 349 VHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKD 382
VH+LL +LGRRE DDRDH+ + Y Q+ ++ K+
Sbjct: 179 VHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKE 238
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN L IK+ +T GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 239 FNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTP 298
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM Y++VG+ PI+EF+ +
Sbjct: 299 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQR 358
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
SME LEE P +ATK+FVNG WVG+HRDP L+ T+R LRR I EVS+IRDIR
Sbjct: 359 SMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISY-EVSLIRDIR 417
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL---------------KER 600
DRE +I TDAGR+CRPL + +N G+L+L K HI L +ER
Sbjct: 418 DREFKIFTDAGRVCRPLFVIDNDVNSKNKGNLVLNKGHIKRLEDDTTLPLGLDLEEKQER 477
Query: 601 DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y +G+Q L+ GVVEY+D EEET MI M
Sbjct: 478 GY--FGFQGLIDEGVVEYVDAEEEETVMIVM 506
>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma
tsugae]
Length = 883
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/468 (54%), Positives = 341/468 (72%), Gaps = 35/468 (7%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S ++ EIRS +E + S V + R K+ ++G + A +PYIK +IPI +V
Sbjct: 4 SPISFLAEIRSAVEKGGKTISQFQVKLYHRS----KERSLGNVMKATIPYIKIDIPIWVV 59
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +DE FVIQ++ +AL++IG RG G+ +
Sbjct: 60 FRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNR 119
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RR+LDDRDH+
Sbjct: 120 ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKR 179
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FN+ LA+K IT+GL+YSLATGN
Sbjct: 180 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGN 239
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPA
Sbjct: 240 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNL+LM+ ISVG+ +P++EFLEEW +E+LEE A A TK+FVNG
Sbjct: 300 ETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGV 358
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP +L+ TLRKLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN
Sbjct: 359 WMGVHRDPVKLVSTLRKLRRK-DDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQ 417
Query: 587 LLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LL++K+HI++L KE +Y W L++ GV+E +D EEET MI M
Sbjct: 418 LLIQKKHIESLVRAKEDPTLSYNWDSLLKDGVIELLDAEEEETVMICM 465
>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
sulphureus]
Length = 897
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/476 (54%), Positives = 343/476 (72%), Gaps = 36/476 (7%)
Query: 186 YVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIK 244
YVF+ + S ++ EIRS +E + S V + R ++ ++G + A +PYIK
Sbjct: 1 YVFAKAQPSPVSFLAEIRSAVERGGKTISQFQVKLYHRN----QERSLGNVMKATIPYIK 56
Query: 245 QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGAR 304
+IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG R
Sbjct: 57 VDIPIWVVFRALGVISDRDILEHICYDMQDVQMLEMLKPCIDDGFVIQDREVALDFIGNR 116
Query: 305 GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDD 364
G G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA++ RR+LDD
Sbjct: 117 GTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDD 176
Query: 365 RDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGL 398
RDH+ V Y QK ++ K+FNL LA+K IT+GL
Sbjct: 177 RDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGL 236
Query: 399 RYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNT 458
+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT
Sbjct: 237 KYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNT 296
Query: 459 LWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA 518
WGM+CPAETPEG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A SA
Sbjct: 297 HWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP-C 355
Query: 519 TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRP 578
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRP
Sbjct: 356 TKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRP 414
Query: 579 LLIAENGSLLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L I EN LLL K+HI L ++ + Y W LV+ GV+E +D EEET MI M
Sbjct: 415 LFIVENQQLLLAKKHIQYLNDGQDEEGKPYKWDSLVKGGVIELLDAEEEETVMICM 470
>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum
viride]
Length = 938
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/511 (53%), Positives = 347/511 (67%), Gaps = 54/511 (10%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S + EIRS LE SR S+L + + ++G +
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPPSPTPFVAEIRSALEKGSRLISSLTIKLHSKGDN--Q 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ + G + + LPYIK +IPI IVFRALG V+D DIL HI YD +D +M+EM+KP ++EA
Sbjct: 59 RGSFGSTVKSTLPYIKADIPIGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEA 118
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ VAL++IG RG G+T+++RIKYAR+I+QKE+LPH+ + ET+KA+FLGYM
Sbjct: 119 FVIQDREVALDYIGKRGNAMGLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYM 178
Query: 349 VHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKD 382
VH+LL +LGRRE DDRDH+ + Y Q+ ++ K+
Sbjct: 179 VHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRCVENRKE 238
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN L IK+ +T GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 239 FNPALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTP 298
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM Y++VG+ PI+EF+ +
Sbjct: 299 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQR 358
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
SME LEE P +ATK+FVNG WVG+HRDP L+ T+R LRR I EVS+IRDIR
Sbjct: 359 SMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISY-EVSLIRDIR 417
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL---------------KER 600
DRE +I TDAGR+CRPL + +N G+L+L K HI L +ER
Sbjct: 418 DREFKIFTDAGRVCRPLFVIDNDVSSKNKGNLVLNKGHIKRLEDDATLPLGLDLEEKQER 477
Query: 601 DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y +G+Q L+ GVVEY+D EEET MI M
Sbjct: 478 GY--FGFQGLIDEGVVEYVDAEEEETVMIVM 506
>gi|45120526|gb|AAS55048.1| RNA polymerase II second largest subunit [Heterobasidion annosum]
Length = 515
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 259/462 (56%), Positives = 336/462 (72%), Gaps = 35/462 (7%)
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 258
EIRS +E + S V M RG ++ A G + A +PYIK +IPI +VFRALG
Sbjct: 2 AEIRSAVEKGGKTISQFQVKMYHRG----QEKASGNVMKATIPYIKVDIPIWVVFRALGV 57
Query: 259 VADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKY 318
++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G++++RR++Y
Sbjct: 58 ISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRDRRVRY 117
Query: 319 AREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------- 368
A+EILQKEMLPH+ +S+ E+KKAYF GYM+HRL+LA++ RRELDDRDH+
Sbjct: 118 AQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLVLAAMERRELDDRDHFGKKRLDLAGP 177
Query: 369 ----------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
V Y QK ++ KDFNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 178 LLANLFRMLFRKLTRDVYRYLQKCVETHKDFNLXLAVKHNTITNGLKYSLATGNWGDQKK 237
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 238 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 297
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG W+G+HR
Sbjct: 298 ACGLVKNLALMSTISVGSLSAPVIEFLEEWGLESLEENANSATP-TTKVFVNGVWMGVHR 356
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I E+ L L+KR
Sbjct: 357 DPANLIKTIKKLRRK-DDIHPEVSVVRDIRERELRLYTDAGRVCRPLFIVEDQQLALQKR 415
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ L + D + W L++SGV+E +D EEET MI M
Sbjct: 416 HVRWLNAGQSDDGQPFKWNNLIKSGVIELLDAEEEETVMICM 457
>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1198
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 293/688 (42%), Positives = 422/688 (61%), Gaps = 68/688 (9%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
Q+ W VI +YF + GLV QQ+ SF+ F++M+VQ IV++ ++ E Q+ +E
Sbjct: 26 QDDAWAVIRSYFKQHGLVSQQISSFNRFLEMNVQEIVKEHKHNRIKVEPQYLPSEGRDST 85
Query: 63 R----YLLKFEQIYLSK-PTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDIT-------- 109
+ Y + FEQ++++ P E D S + P+EAR+RNLTY+ +YVD+
Sbjct: 86 QENIYYDVIFEQVHVNNSPRIQESDESYQAVFPHEARIRNLTYATEIYVDVKLQKLQQIP 145
Query: 110 --KTVVRQGE--EPVTTQHQKS-----FIGKIPIMLRSTYCLLNGLTDRDLT-ELNECPL 159
KT +R GE EP T + S F+GK+P+M+RS +C L L D ++ EC
Sbjct: 146 YDKTGLRDGEKREPKFTILEDSKPIQTFLGKVPVMVRSKFCHLRNLQDHEIVRNAKECLY 205
Query: 160 DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVN 218
D GGYF+ING EKV+IAQE+MA N V VF + SKY++ EIRS E+S++P V
Sbjct: 206 DQGGYFVINGGEKVIIAQERMANNIVLVFHRRPPSKYSWVAEIRSQAENSNKPPQQFMVA 265
Query: 219 MMAR------GGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 272
+ + GG + ++ I A +P I++ IP+ I+ RALG V+D+ I+ I YD
Sbjct: 266 IQEKIKLGEQGGGNYART-----ICATIPAIREPIPVAILMRALGCVSDKQIINKICYDP 320
Query: 273 DDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVG 332
+D EM E +KPSL++A + + AL+FI RG+ +++ RI+YA++IL+ E LPHV
Sbjct: 321 EDSEMCESLKPSLEQAMTVMTEEDALDFISKRGSGAQYSRDTRIQYAQKILETEFLPHVS 380
Query: 333 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--------------------- 371
++ KK+YF+GYMV+RL+ ASLGR DDRD+Y +
Sbjct: 381 MNAEGLYKKSYFVGYMVNRLIQASLGRTSEDDRDYYGKKRMDMAGSLLSGLFRQLFRQTT 440
Query: 372 -----YAQKFIDRGKD-FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLN 425
Y ++ ID GK +L AIK+ I+ GL+ +LATGNWG K+ + GV+QVLN
Sbjct: 441 DDMLKYLKRDIDNGKQILSLASAIKSDTISRGLKSALATGNWGKDKQGDVQKTGVAQVLN 500
Query: 426 RLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAY 485
RLTFASSLSHLRR+N+P+ + GKL KPRQLHN+ WGM+CPAETPEG A GLVKNL+LM+
Sbjct: 501 RLTFASSLSHLRRLNTPLAKSGKLTKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMSL 560
Query: 486 ISVGSQPSPILEFLEEWSMENLEEIAPSAIADA--TKIFVNGCWVGIHRDPEQLMGTLRK 543
+SVGS ++E LE++ +E+L + P + + K+FVNG W+G HR+ L+ ++
Sbjct: 561 VSVGSPNKTLIEILEDFGVEDLTSLDPIILQNKELVKVFVNGNWIGCHRNATDLVKNIKD 620
Query: 544 LRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYN 603
+RR I E+SI+RDI +EI+ TD+GR+ RPL I EN +L +KK HI L N
Sbjct: 621 MRRTY-TIPKEISIVRDIYTKEIKFFTDSGRVQRPLFIVENSALRIKKFHIPQLINGSKN 679
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
++ L+Q G+ E++D EEET MIAM
Sbjct: 680 ---FEDLLQEGLCEFLDVEEEETVMIAM 704
>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
pachyodon]
Length = 901
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/477 (53%), Positives = 343/477 (71%), Gaps = 34/477 (7%)
Query: 182 TNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
TN VYVF+ + S ++ EIRS +E + S V + R ++ + G + A +
Sbjct: 1 TNHVYVFAKGQPSPISHLAEIRSAVEKGGKTISQFQVKLYHRS----QERSTGNVMKATI 56
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIK +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+F
Sbjct: 57 PYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDDGFVIQDREVALDF 116
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG RG G+ +ERR++YA+EILQKEMLPH+ +++ E+KKAYF GYM+HRLLLA+L RR
Sbjct: 117 IGNRGTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERR 176
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDH+ V Y QK ++ K+FNL LA+K I
Sbjct: 177 ELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTI 236
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
T+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQ
Sbjct: 237 TNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQ 296
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHN WGM+CPAETPEG A GLVKNL+LM+ ISVGS P++EFLEEW +E+LEE S
Sbjct: 297 LHNHHWGMVCPAETPEGQACGLVKNLSLMSCISVGSFSGPVIEFLEEWGLESLEENVHSP 356
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RD R+RE+RI+TDAGR
Sbjct: 357 TP-TTKVFVNGVWMGVHRDPVNLVKTIKKLRRK-DDISPEVSVVRDTRERELRIYTDAGR 414
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+CRPL I E+ L +KK+HI L+++D +N+ W +++ G++E +D EEET MI M
Sbjct: 415 VCRPLFIVEDEQLAIKKKHIRMLEDKD-SNFAWDDMIKKGIIELLDAEEEETAMICM 470
>gi|45120580|gb|AAO64681.2| RNA polymerase II subunit RPB2, partial [Stereum hirsutum]
Length = 801
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 258/464 (55%), Positives = 334/464 (71%), Gaps = 35/464 (7%)
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
+ EIRS +E + S V M R + G I A +PYIK +IPI +VFRAL
Sbjct: 2 FLAEIRSAVEKGGKTISQFQVKMYHRN----QDKTSGNVIKATIPYIKVDIPIWVVFRAL 57
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRI 316
G ++DRDILEHI YD +D +M+EM+KP +D+ FVIQ++ +AL+FIG RG G+++ERR+
Sbjct: 58 GVISDRDILEHICYDMEDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTTTGLSRERRL 117
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------- 368
+YA+EILQKEMLPH+ +S+ E+KKAYF GYM+HRLLLA + RRELDDRDH+
Sbjct: 118 RYAQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLLAGMERRELDDRDHFGKKRLDLA 177
Query: 369 ------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQ 410
V Y QK ++ KDFNL LA+K IT+GL+YSLATGNWGDQ
Sbjct: 178 GPLLANLFRMLFRKLTRDVYRYLQKCVETHKDFNLNLAVKHNTITNGLKYSLATGNWGDQ 237
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
KK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPE
Sbjct: 238 KKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPE 297
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 530
G A GLVKNL+LMA ISVGS P+++FLEEW +E+LEE A SA TK+FVNG W+G+
Sbjct: 298 GQACGLVKNLSLMATISVGSLSLPVIDFLEEWGLESLEENAHSATP-TTKVFVNGVWMGV 356
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLK 590
HRDP L+ T++KLRR+ D I EVSI+RDIR+RE+R++TDAGR+CRPL + E+ L +
Sbjct: 357 HRDPANLIKTIKKLRRK-DDIHPEVSIVRDIRERELRLYTDAGRVCRPLFVVEDQXLAVT 415
Query: 591 KRHIDNLKERDYNN---YGWQVLVQSGVVEYIDTLEEETTMIAM 631
K+HI+ L +N + W L++SGVVEY+D EEET MI M
Sbjct: 416 KKHINMLTRGTDDNGEEFKWNNLIKSGVVEYLDAEEEETVMICM 459
>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
Length = 889
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/469 (54%), Positives = 341/469 (72%), Gaps = 37/469 (7%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S + EIRS +E + S V M R ++ ++G + A +PYIK +IPI +V
Sbjct: 4 SPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNVMKATIPYIKVDIPIWVV 59
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FR LG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G+++
Sbjct: 60 FRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSR 119
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RRELDDRDH+
Sbjct: 120 ERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKR 179
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K + IT+GL+YSLATGN
Sbjct: 180 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGN 239
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPA
Sbjct: 240 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG
Sbjct: 300 ETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGV 358
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN
Sbjct: 359 WMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQ 417
Query: 587 LLLKKRHIDNLKERDYNNYG----WQVLVQSGVVEYIDTLEEETTMIAM 631
L L+K+H+ L +N+ G W+ LV++G++E +D EEET MI+M
Sbjct: 418 LALQKKHVKWLNS-GFNDEGEAFKWEHLVKNGIIELLDAEEEETVMISM 465
>gi|88601072|gb|ABD46532.1| RNA polymerase II second largest subunit, partial [Vuilleminia
comedens]
Length = 880
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/506 (52%), Positives = 345/506 (68%), Gaps = 44/506 (8%)
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MATN VYVF+ + S ++ EIRS +E + S V + + + GQ I A
Sbjct: 1 MATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYTKSSDRASSNPGGQ-IKA 59
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PYIK +IPI I FRALG ++DRDILEHI YD D +M+EM+KP +D+ +Q++ V L
Sbjct: 60 TIPYIKVDIPIWIXFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDDGIFVQDREVCL 119
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG RG G+++ERR+ YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L
Sbjct: 120 DYIGNRGTTTGLSRERRLXYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALE 179
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RRELDDRDH+ V Y QK ++ K+FN+ LA+K
Sbjct: 180 RRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETSKEFNISLAVKHN 239
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IT+GL+YSLATGNWGDQKK+ ++AG SQVLNR T+AS+LSHLRR N+P+GR+GK+AKP
Sbjct: 240 TITNGLKYSLATGNWGDQKKSMASKAGXSQVLNRYTYASTLSHLRRCNTPLGREGKIAKP 299
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A
Sbjct: 300 RQLHNTHWGMVCPAETPEGQACGLVKNLALMSTISVGSYSAPVIEFLEEWGLESLEENAH 359
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S TK+FVNG W+G+HRDP L+ T+++LRR+ D I EVS++RDIR+RE+RI TDA
Sbjct: 360 SQTP-CTKVFVNGVWMGVHRDPANLVKTIKQLRRK-DDISPEVSVVRDIRERELRIATDA 417
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW 632
GR+CRPL I N L LKK+HID L V V D ++EE +
Sbjct: 418 GRVCRPLFIVNNKELALKKKHIDLLN------------VGKHYVTTADGVQEEQDY--KF 463
Query: 633 QVLVQSGVVEYIDTLEEETTMIAMSP 658
LV+ GV+EY+D EEET MI M+P
Sbjct: 464 DSLVKEGVIEYLDAEEEETVMICMTP 489
>gi|300394776|gb|ADK11926.1| DNA-directed RNA polymerase II subunit two, partial [Athelia
rolfsii]
Length = 547
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/482 (54%), Positives = 345/482 (71%), Gaps = 36/482 (7%)
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MATN VYVF+ + S + EIRS +E + S V M R ++ ++G I A
Sbjct: 1 MATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMYHRN----QERSLGNVIKA 56
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PYIK +IPI IVFRALG ++DRDILEHI YD D +M+EM+KP +DE FVIQ++ VAL
Sbjct: 57 TIPYIKVDIPIXIVFRALGVISDRDILEHICYDMQDTQMLEMLKPCIDEGFVIQDREVAL 116
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+FIG RG G+++ERRI+YA+EILQKEMLPH+ +S+ E+KKAYF GYMVHRLLLA++
Sbjct: 117 DFIGNRGTTTGLSRERRIRYAQEILQKEMLPHISMSEGSESKKAYFFGYMVHRLLLAAME 176
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RRELDDRDH+ V Y QK ++ K+FNL LA+K +
Sbjct: 177 RRELDDRDHFGKKRLDLAGPLLANLFRMLFRXLTKDVYRYLQKCVETHKEFNLSLAVKHQ 236
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKP
Sbjct: 237 TITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKP 296
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CP LVKNLALM+ ISVGSQ +P++EFLEEW +E+LEE A
Sbjct: 297 RQLHNTHWGMVCPXXXXXXXXXXLVKNLALMSCISVGSQSAPVIEFLEEWGLESLEENAH 356
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S I TK+FVNG W+G+HR P+ L+ TL LRR+ D I EVSI+RDIR++E+R++TDA
Sbjct: 357 SDI-QPTKVFVNGVWMGVHRQPQDLVDTLLMLRRK-DDISPEVSIVRDIREKELRLYTDA 414
Query: 573 GRICRPLLIA-ENGSLLLKKRHIDNL--KERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
GR+CRPL + + L+LKK+H+ L K+ + N++ W L++SG+VEY+D EEET MI
Sbjct: 415 GRVCRPLFVVNQKQELVLKKKHVQMLGGKDENGNDFTWDSLIKSGIVEYLDAEEEETVMI 474
Query: 630 AM 631
+M
Sbjct: 475 SM 476
>gi|45545351|gb|AAS67523.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Thamnolia vermicularis]
Length = 893
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 261/498 (52%), Positives = 341/498 (68%), Gaps = 48/498 (9%)
Query: 179 KMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+ A N V VF D K + EIRS +E SR S++ + + ++G + K GQ I +
Sbjct: 1 RSAANIVQVFKKSDGKTPFVAEIRSAVEKGSRLISSMQIKLHSKGEGA--KGGFGQTIKS 58
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LPYIK EIPI+IVFRALG V+D DIL HI YD +D +M+EM+KP ++EAFVIQ++ VAL
Sbjct: 59 TLPYIKSEIPIVIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDREVAL 118
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+FIG RG G+T+++RIKYAR+I+QKE+LPH+ + ET+KA+FLGYMVHR+L +LG
Sbjct: 119 DFIGKRGNSQGITRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVHRMLQVALG 178
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RR+ DDRDH+ V Y QK ++ ++FNL L +K+
Sbjct: 179 RRDPDDRDHFGKKRLDLAGPLMAGLFRMLFNKLTKDVYKYLQKCVESNREFNLTLGVKST 238
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
+T+GL+YSLATGNWGDQKKA ++AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKP
Sbjct: 239 TLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKP 298
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WG++CPAETPEG A GLVKNLALM ++VGS PI++F+ + +ME LEE P
Sbjct: 299 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILEEYEP 358
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
+ATK+FVNG WVG+HRDP L+ T+ LRR+ +I EVS+IRDIRDRE +I TDA
Sbjct: 359 LRSPNATKVFVNGVWVGVHRDPAHLVSTVMSLRRR-GLISHEVSLIRDIRDREFKIFTDA 417
Query: 573 GRICRPLLIAEN-------GSLLLKKRHIDNLK------------ERDYNNYGWQVLVQS 613
GR+CRPL + +N GSL+L K ++ L+ E+ GW L++
Sbjct: 418 GRVCRPLFVIDNDAKSPNKGSLVLTKELVNRLEDDKDLPADMDPDEKAAKTMGWDGLIKR 477
Query: 614 GVVEYIDTLEEETTMIAM 631
GVVEY+D EEET MI M
Sbjct: 478 GVVEYLDAEEEETVMIVM 495
>gi|45545327|gb|AAS67511.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Dibaeis baeomyces]
Length = 893
Score = 523 bits (1348), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/513 (51%), Positives = 347/513 (67%), Gaps = 49/513 (9%)
Query: 179 KMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+ A N V VF D+K Y EIRS +E SR S++ + + ++G + K GQ I A
Sbjct: 1 RSAANIVQVFKKSDAKTPYVAEIRSAVEKGSRLISSMQIKLHSKGEGA--KGGFGQTIKA 58
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LPYIK EIPI+IVFRALG V+D DIL HI YD D +M+EM+KP ++EAFVIQ++ VAL
Sbjct: 59 TLPYIKSEIPIVIVFRALGVVSDEDILNHICYDRKDTQMLEMLKPCIEEAFVIQDREVAL 118
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+FIG RG G+T+++RIKYAR+I+QKE+LPH+ + ET+KA+FLGYMVHR+L +LG
Sbjct: 119 DFIGKRGNSQGITRDKRIKYARDIMQKELLPHISQVEGSETRKAFFLGYMVHRMLQVTLG 178
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RR+ DDRDH+ V Y QK ++ ++FNL L +K+
Sbjct: 179 RRDPDDRDHFGKKRLDLAGPLMAGLFRTLFNKLTKDVYKYLQKCVESNREFNLTLGVKST 238
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
+T+GLRYSLATGNWG+QKKA ++AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKP
Sbjct: 239 TLTNGLRYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKP 298
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WG++CPAETPEG A GLVKNLALM ++VGS PI++F+ + +ME LEE P
Sbjct: 299 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCCVTVGSPSEPIIDFMVQRNMEILEEYEP 358
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
+ATK+FVNG WVG+HRDP L+ T+ LRR+ +I EVS++RDIRDRE +I TDA
Sbjct: 359 LRSPNATKVFVNGVWVGVHRDPAHLVSTVMSLRRR-GLISHEVSLVRDIRDREFKIFTDA 417
Query: 573 GRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEE 625
GR+CRPL + +N GSL+L K + L++ + +D +E+
Sbjct: 418 GRVCRPLFVIDNDAKSPNKGSLVLTKELVSRLED------------DKDLPADMDP-DEK 464
Query: 626 TTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
I W L++ GVVEY+D EEET MI M+P
Sbjct: 465 AAKIMGWDGLIKRGVVEYLDAEEEETVMIVMTP 497
>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
insculpta]
Length = 936
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/508 (52%), Positives = 344/508 (67%), Gaps = 50/508 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K S EIRS +E SR S++ + + ++G +K
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKGSPTPVVAEIRSAVEKGSRLISSMQLKLFSKGDS--QK 58
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+G I A LPYIK +IPI IVFRALG V+D IL+ I YD +D +M EM+KP L+EAF
Sbjct: 59 GGLGGTIKATLPYIKSDIPIAIVFRALGVVSDMQILDCICYDANDSQMREMIKPCLEEAF 118
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ VAL+FIG RG + G T+E RI+YAR+++QKE LPH+ + ET+KA+FLGYM+
Sbjct: 119 VIQDREVALDFIGKRGQQMG-TREXRIRYARDVMQKEFLPHISQKEGSETRKAFFLGYMI 177
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+RLL +LGR E DDRDH+ R+Y + ++ GK+F
Sbjct: 178 NRLLQCALGRVEEDDRDHFGKKRLDLAGPLMAQVFRLKFTQLIRDTRVYLSRCVEGGKEF 237
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL LA+K I++ GLRY LATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+PI
Sbjct: 238 NLTLAVKANILSSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPI 297
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ PI+EF+ + +
Sbjct: 298 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPSEPIIEFMNQRN 357
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P DATK+FVNG WVG+HRDP QL+ ++ LRR I E+S+IRD+RD
Sbjct: 358 MELLEEYEPKNNPDATKVFVNGVWVGVHRDPAQLVKVVQSLRRS-GTISFEISLIRDVRD 416
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK-------------ERDYN 603
RE +I TDAGR+ RPL + +N G L+L + +I+ L+ +RD N
Sbjct: 417 REFKIFTDAGRVMRPLFVVDNEPTSERRGHLVLARSNIERLQTDREMDLTGLSEEQRDSN 476
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW+ L+ G++EY+D EEE MI M
Sbjct: 477 IYGWKGLIGDGIIEYLDAEEEEAAMITM 504
>gi|156627827|gb|ABU88901.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627829|gb|ABU88902.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627831|gb|ABU88903.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627833|gb|ABU88904.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
Length = 884
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/495 (53%), Positives = 342/495 (69%), Gaps = 44/495 (8%)
Query: 176 AQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+ A N V VF S Y EIRS +E SR S++ + + ++ S +
Sbjct: 1 AQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSK---SDPRGGYNA 57
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
I + LPYIK +IPI+IVFRALG V+D DIL H+ YD +D EM+EM+KP ++EAFVIQ++
Sbjct: 58 TIKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTEMLEMMKPCIEEAFVIQDR 117
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
VAL+FIG RG GV KE+RI+YAR+I+QKE+LPH+ + ET+KA+FLGYMVHR+L
Sbjct: 118 EVALDFIGKRGNSQGVNKEKRIRYARDIMQKELLPHISQKEGSETRKAFFLGYMVHRMLQ 177
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
+L RRE+DDRDH+ V Y +K ++ K+FNL LA
Sbjct: 178 CALERREVDDRDHFGKKRLDLAGPLLAQLFRNLWKQLTKEVYKYLEKCVEGSKEFNLNLA 237
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
+K+ IT GL+YSLATGNW QKKA ++AGVSQVLNR TFAS+LSHLRR N+PIGRDGK
Sbjct: 238 VKSNTITTGLKYSLATGNWASQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 297
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+YI+VG+ PI++F+ + +ME LE
Sbjct: 298 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYITVGTPGDPIVDFMAQRNMEFLE 357
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
E P +ATKIFVNG WVGIHRDP QL+ T++KLRR +I EVS+IRDIRDRE +I
Sbjct: 358 EYEPQRSPNATKIFVNGVWVGIHRDPLQLVRTVQKLRR-TGVISHEVSVIRDIRDREFKI 416
Query: 569 HTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN-----NYGWQVLVQSGVV 616
TDAGR+CRPL +N G L+L+K HI+ L E D++ +GW+ L+ G V
Sbjct: 417 FTDAGRVCRPLFAIDNDPTSERRGQLVLQKEHIERL-EDDHSLPEEERFGWKGLLSVGAV 475
Query: 617 EYIDTLEEETTMIAM 631
EY+D EEET MI M
Sbjct: 476 EYLDAEEEETVMIVM 490
>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis
aurantiaca]
Length = 863
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/434 (57%), Positives = 329/434 (75%), Gaps = 32/434 (7%)
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
++ ++G + A +PYI+ +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+
Sbjct: 5 QERSLGNVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDD 64
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GY
Sbjct: 65 GFVIQDREVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGY 124
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLLA+L RRELDDRDH+ V Y QK ++ K
Sbjct: 125 MIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVETHK 184
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+
Sbjct: 185 EFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 244
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEE
Sbjct: 245 PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEE 304
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E+LEE A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDI
Sbjct: 305 WGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDI 362
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGVVE 617
R+RE+R++TDAGR+CRPL I EN L+L+K+H+ L +E D Y W+ L++ G++E
Sbjct: 363 RERELRLYTDAGRVCRPLFIVENQQLMLQKKHVKWLNQGYREEDGEEYKWEQLIKGGIIE 422
Query: 618 YIDTLEEETTMIAM 631
+D EEET MI+M
Sbjct: 423 LLDAEEEETVMISM 436
>gi|45120568|gb|AAO64656.2| RNA polymerase II subunit RPB2, partial [Echinodontium tinctorium]
Length = 871
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/465 (56%), Positives = 339/465 (72%), Gaps = 36/465 (7%)
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
+ EIRS +E S + S V M R S +K++ G I A +PYIK +IPI +VFRAL
Sbjct: 4 FLAEIRSAVEKSGKTISQFQVKMFHR---SQEKTS-GNVIKATIPYIKVDIPIWVVFRAL 59
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRI 316
G ++DRDILEHI YD D M+EM+KP +D+ FVIQ++++AL+FIG RG G+++ERRI
Sbjct: 60 GVISDRDILEHICYDMSDSPMLEMLKPCIDDGFVIQDRDIALDFIGNRGTTTGLSRERRI 119
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------- 368
+YA+EILQKEMLPHV +S+ E++KAYF GYM+HRLLLA++ RRELDDRDH+
Sbjct: 120 RYAQEILQKEMLPHVSMSEGSESRKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLA 179
Query: 369 ------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQ 410
V + QK ++ K+FNL LAIK IT+GL+YSLATGNWGDQ
Sbjct: 180 GPLLANLFRMLFRKLTRDVYRHLQKCVETHKEFNLNLAIKHTTITNGLKYSLATGNWGDQ 239
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
KKA A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPE
Sbjct: 240 KKAMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPE 299
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 530
G A GLVKNL+LMA ISVGS I++FLEEW +E+LEE A S+ TK+FVNG WVGI
Sbjct: 300 GQACGLVKNLSLMACISVGSTSGTIVDFLEEWGLESLEENAHSSTL-TTKVFVNGVWVGI 358
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLK 590
HRDP L+ TL+KLRR+ D + EVSI+RDIR+RE+RI+TD G +CRPL + EN L+L+
Sbjct: 359 HRDPTNLISTLKKLRRK-DDVHPEVSIVRDIRERELRIYTDPGXVCRPLFVVENHQLVLE 417
Query: 591 KRHIDNLKE--RDY--NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K+H+ + + RD+ + + W L+++GV+E +D EEET MI M
Sbjct: 418 KKHVQWVSQGYRDHPXDPFHWSQLIKTGVIEMLDAEEEETVMICM 462
>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Aspergillus fumigatus]
Length = 936
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/509 (51%), Positives = 347/509 (68%), Gaps = 50/509 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A NTV VF S Y EIRS +E SR S L + + A+G +
Sbjct: 1 SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSA-- 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G I + LPY+K +IPI++VFRALG V+D DIL HI YD +D M+EM+KP ++E
Sbjct: 59 KGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEG 118
Query: 289 FVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FI RG+ + + ERR++YAREI+QKE+LPH+ S+ ET+KA+FLGY
Sbjct: 119 FVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MVHRLL +LGRR++DDRDH+ ++ Y Q+ ++ +
Sbjct: 179 MVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVETNR 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+ L + IK +T GL+Y+LATGNWG+QKKA ++AGVSQVL+R T+AS+LSHLRR N+
Sbjct: 239 EIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ +
Sbjct: 299 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ME LEE P +ATK+FVNG WVG+HRDP L+ T+ LRR+ ++I EVS+IRDI
Sbjct: 359 RNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVNTMLSLRRR-NMISHEVSLIRDI 417
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE------------RDY 602
R+RE +I TDAGR+CRPL + +N GSL+L K HI L++ R
Sbjct: 418 REREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKDHIRKLEQDKELPADLDPEDRRE 477
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW LV+SGVVEY+D EEET MI M
Sbjct: 478 RYFGWDGLVKSGVVEYVDAEEEETIMIVM 506
>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
Length = 892
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/471 (54%), Positives = 334/471 (70%), Gaps = 38/471 (8%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S + EIRS +E + S V M R + G + A +PYIK +IPI +V
Sbjct: 4 SPINFLAEIRSAVEKGGKTISQFQVKMYHRN----QDKGSGNVMKATIPYIKVDIPIWVV 59
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ +AL+FIG RG G+++
Sbjct: 60 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTATGLSR 119
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L R ELDDRDH+
Sbjct: 120 ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERPELDDRDHFGKKR 179
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K FN+ LA+K IT+GL+YSLATGN
Sbjct: 180 LDLAGPLLAGLFRMLFRKLTKDVYRYLQKCVEGHKAFNISLAVKHNTITNGLKYSLATGN 239
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ +AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPA
Sbjct: 240 WGDQKKSMTTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S I TK+FVNG
Sbjct: 300 ETPEGQACGLVKNLALMATISVGSLSAPVIEFLEEWGLESLEENAHSPIP-LTKVFVNGV 358
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN
Sbjct: 359 WMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQ 417
Query: 587 LLLKKRHIDNLKE--RD----YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L L+K+H+ L + RD + Y W LV+ GV+EY+D EEET MI M
Sbjct: 418 LALQKKHVKWLNQGYRDDDPAQDPYKWDSLVKGGVIEYLDAEEEETVMICM 468
>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Phragmidium sp. MB]
Length = 931
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/504 (53%), Positives = 345/504 (68%), Gaps = 46/504 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+MA N V V++ S ++ EIRS +E S+ S++ V M GG +
Sbjct: 1 SEKVLIAQERMAANHVCVYAKAAPSPVSFLCEIRSAVEKGSKTISSMQVKMY--GGHKAE 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K+ G I LPYI+ ++PI++VFRALG + D++IL+HI YD +D M+EM+KP L+++
Sbjct: 59 KAGGGATIKTTLPYIRNDVPIVVVFRALGIIPDKEILDHICYDRNDIGMLEMLKPCLEDS 118
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
F IQEQ VAL+FIG RG G+++ERR++YA EILQKEMLPH+ +S+ + KKAYF GYM
Sbjct: 119 FPIQEQEVALDFIGRRGTSTGLSRERRLQYAEEILQKEMLPHISMSEGQQGKKAYFFGYM 178
Query: 349 VH---------------------RL-----LLASLGRRELDDRDHYVRMYAQKFIDRGKD 382
VH RL LLASL R V + QK ++ K
Sbjct: 179 VHRLLLAALDRRDLDDRDHFGKKRLDLAGPLLASLFRILFRKLTKDVYRHLQKCVEMQKP 238
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL A+K+ IT+GL+YSLATGNWGDQKKA QA+AGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 239 FNLNAAVKSNTITNGLKYSLATGNWGDQKKAMQAKAGVSQVLNRYTFASTLSHLRRCNTP 298
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHN+ WGM+CPAETPEG A GLVKNLALM+YISVGS +PI+EFLEEW
Sbjct: 299 IGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEW 358
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME+L+E + S +A TK+FVNG W G+HR P L+ T+++LRR D I EVS++RD+R
Sbjct: 359 GMESLDEYS-SDMASGTKVFVNGVWQGVHRSPADLLDTIKRLRRCGD-IEPEVSVMRDVR 416
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHID---------------NLKERDYNNYGW 607
+RE+R+ TD GR+CRPL I EN LLLKK H++ + E + +GW
Sbjct: 417 ERELRVFTDGGRVCRPLFIVENQQLLLKKEHVEWLSNGCISASDDPNAEIPEDEGQPFGW 476
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
LV G+VEY+D EEET MI M
Sbjct: 477 SQLVARGIVEYLDAEEEETVMICM 500
>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella
nidulans]
Length = 1009
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/509 (52%), Positives = 346/509 (67%), Gaps = 50/509 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A NTV VF S Y EIRS +E SR S L + + +G +
Sbjct: 1 SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSA-- 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G I + LPYIK +IPI+IVFRALG V+D DIL HI YD +D M+EM+KP ++E
Sbjct: 59 KGGFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEG 118
Query: 289 FVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FI RG+ + + ERR++YAREI+QKE+LPH+ S+ ET+KA+FLGY
Sbjct: 119 FVIQDREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MVHRLL +LGRR++DDRDH+ ++ Y Q+ ++ +
Sbjct: 179 MVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDR 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+ L + +K +T GLRY+LATGNWG+QKKA A+AGVSQVL+R T+AS+LSHLRR N+
Sbjct: 239 EIYLNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ +
Sbjct: 299 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ME LEE P +ATK+FVNG WVG+HR P L+ T++ LRR+ ++I EVS+IRDI
Sbjct: 359 RNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRR-NMISHEVSLIRDI 417
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE------------RDY 602
R+RE +I TDAGR+CRPL + +N G+L+L K HI L+E R
Sbjct: 418 REREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDRRE 477
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW LV+SGVVEY+D EEET MI M
Sbjct: 478 RYFGWDGLVKSGVVEYVDAEEEETIMIVM 506
>gi|45545305|gb|AAS67500.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Baeomyces sp. SLJ472]
Length = 894
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/498 (52%), Positives = 340/498 (68%), Gaps = 48/498 (9%)
Query: 179 KMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+ A N V +F D+K + EIRS +E SR S L + + ++G + K +GQ I
Sbjct: 1 RSAGNIVQIFKKADNKTPFVAEIRSAVEKGSRLISGLQIKIHSKGEGA--KGGLGQTIKV 58
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LPYIK E+PI IVFRALG V+D DIL HI YD D M+E++KP ++EAFVIQ++ VAL
Sbjct: 59 TLPYIKSEVPIAIVFRALGVVSDEDILNHICYDRQDTPMLELLKPCIEEAFVIQDREVAL 118
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+FIG RG +T+++RIKYAR+I+ KE+LPH+ ++ ET+KA+FLGYMVHR+L LG
Sbjct: 119 DFIGKRGNSNSITRDKRIKYARDIVVKELLPHISQTEGSETRKAFFLGYMVHRMLQVVLG 178
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RRE DDRDH+ V Y +K ++ ++FNL L +K+
Sbjct: 179 RREPDDRDHFGKKRLDLAGPLMAGLFRMLFNKLVKDVYNYLKKCVESNREFNLSLGVKST 238
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
+T+GL+YSLATGNWGDQKKA ++AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKP
Sbjct: 239 TLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKP 298
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WG++CPAETPEG A GLVKNL+LM YI+VG+ PI++F+ + SME LEE P
Sbjct: 299 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYITVGTPNEPIIDFMIQRSMEVLEEYEP 358
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
+ +ATK+FVNG WVG+HRDP L+ T++ LRR+ +I EVS++RDIRDRE +I TDA
Sbjct: 359 TRSPNATKVFVNGVWVGVHRDPAHLVSTVQSLRRR-SLISHEVSLVRDIRDREFKIFTDA 417
Query: 573 GRICRPLLIAEN-------GSLLLKKRHIDNLK------------ERDYNNYGWQVLVQS 613
GR+CRPL + EN GSL+L K ++ L+ ER +GW LV+S
Sbjct: 418 GRVCRPLFVIENDAKKANKGSLVLTKELVNRLEDDKDIPSDLDPDERAARYFGWDGLVKS 477
Query: 614 GVVEYIDTLEEETTMIAM 631
G VE++D EEET MI M
Sbjct: 478 GAVEFLDAEEEETVMIVM 495
>gi|89274908|gb|ABD65895.1| RNA polymerase II second largest subunit, partial [Trametes
versicolor]
Length = 518
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/470 (54%), Positives = 337/470 (71%), Gaps = 40/470 (8%)
Query: 196 AYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRA 255
++ EIRS +E + S V + R ++ ++G + A +PYIK +IPI +VFRA
Sbjct: 2 SFLAEIRSAVEKGGKTISQFQVKLYHRS----QERSLGNVMKATIPYIKVDIPIWVVFRA 57
Query: 256 LGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERR 315
LG ++DRDILEHI YD D +M+EM+KP +DE FVIQ++ +AL++IG RG G+ +ERR
Sbjct: 58 LGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNRERR 117
Query: 316 IKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------- 368
++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+ RR+LDDRDH+
Sbjct: 118 LRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAFERRDLDDRDHFGKKRLDL 177
Query: 369 -------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGD 409
V Y QK ++ K+F L LA+K IT+GL+YSLATGNWGD
Sbjct: 178 AGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFQLGLAVKHNTITNGLKYSLATGNWGD 237
Query: 410 QKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETP 469
QKK ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETP
Sbjct: 238 QKKTMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETP 297
Query: 470 EGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVG 529
EG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G
Sbjct: 298 EGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGIWMG 356
Query: 530 IHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLL 589
+HRDP L+ T++KLRR+ D I +EVS++RDIR+RE+ ++TDAGR+CRPL I EN LLL
Sbjct: 357 VHRDPANLVKTIKKLRRK-DDISAEVSVVRDIRERELGLYTDAGRVCRPLFIVENQQLLL 415
Query: 590 KKRHIDNLK------ERDYNN--YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+K+HI+NL E+D Y W L++ GV+E +D EEET MI M
Sbjct: 416 QKKHIENLARGKEEPEKDATKFEYKWDNLIKDGVIELLDAEEEETVMICM 465
>gi|6606107|gb|AAF19066.1|AF107794_1 DNA-dependent RNA polymerase II RPB140 [Byssochlamys nivea]
Length = 905
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/509 (51%), Positives = 345/509 (67%), Gaps = 50/509 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N VF S Y EIRS +E SR S L + + ++G +
Sbjct: 1 SEKVLIAQERSAGNIAQVFKKAPPSPTPYVAEIRSAVEKGSRILSQLSLKLFSKGDSA-- 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G I + LPYIK +IPI++VFRALG V+D DIL HI YD +D M+EM+KP ++E
Sbjct: 59 KGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEG 118
Query: 289 FVIQEQNVALNFIGARGA-RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ VAL+FI RG+ + + ERR++YAREI+QKE LPH+ S+ ET+KA+FLGY
Sbjct: 119 FVIQDREVALDFISKRGSSQTSMNHERRVRYAREIMQKEFLPHISQSEGSETRKAFFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MVHRLL +LGRR++DDRDH+ ++ Y Q+ ++ +
Sbjct: 179 MVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRTLFTRVTRDLQRYVQRCVETNR 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+ L + +K +T GL+Y+LATGNWG+QKKA ++AGVSQVL+R T++S+LSHLRR N+
Sbjct: 239 EIYLNIGVKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ +
Sbjct: 299 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQ 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ME LEE P +ATK+FVNG WVGIHRDP L+ T++ LRR+ ++I EVS++RDI
Sbjct: 359 RNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPSHLVSTVQSLRRR-NMISHEVSLVRDI 417
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL------------KERDY 602
RDRE +I TDAGR+CRPL + +N GSL+L K HI L +ER
Sbjct: 418 RDREFKIFTDAGRVCRPLFVIDNDPKSENCGSLVLNKEHIRKLEQDKELPPDLSPEERRE 477
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW LV+SGVVEY+D EEET MI M
Sbjct: 478 RYFGWDGLVRSGVVEYVDAEEEETIMIVM 506
>gi|45120578|gb|AAO64677.2| RNA polymerase II subunit RPB2, partial [Henningsomyces candidus]
Length = 848
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/465 (53%), Positives = 338/465 (72%), Gaps = 35/465 (7%)
Query: 196 AYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRA 255
+ EIRS +E + S V M + + G + A +PYIK +IPI +VFRA
Sbjct: 1 GFLAEIRSAVEKGGKTISQFQVKMFHKS----EGKTSGGVMKASIPYIKVDIPIWVVFRA 56
Query: 256 LGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERR 315
LG ++DRDILEHI YD D +++EM+KP +D+ FVIQ++ VAL+FIG RG G+++++R
Sbjct: 57 LGVISDRDILEHICYDMQDAQILEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRDKR 116
Query: 316 IKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------- 368
I+YA+EILQKEM+PHV +++ E+KKAYF GYM+HRLLLA+L RRELDDRDH+
Sbjct: 117 IRYAQEILQKEMIPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDL 176
Query: 369 -------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGD 409
V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGD
Sbjct: 177 AGPLLANLFRMLFRKLSKDVYRYLQKCVEAQKEFNLALAVKHQTITNGLKYSLATGNWGD 236
Query: 410 QKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETP 469
QKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETP
Sbjct: 237 QKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETP 296
Query: 470 EGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVG 529
EG A GLVKNLALMA ISVGS +P++EFLEEW +E+LE+ A S + TK+FVNG W+G
Sbjct: 297 EGQACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEDNAHSTVP-CTKVFVNGVWMG 355
Query: 530 IHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLL 589
+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L
Sbjct: 356 VHRDPGNLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVL 414
Query: 590 KKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+K+H+ L + + + W+ L+++G+VE +D EEET MI+M
Sbjct: 415 QKKHVKWLGQGTDDQGSKFLWESLIKTGIVELLDAEEEETVMISM 459
>gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Peltigera membranacea]
Length = 895
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/499 (52%), Positives = 337/499 (67%), Gaps = 49/499 (9%)
Query: 179 KMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+ A N V VF S Y EIRS +E SR S++ + + A+G K GQ +
Sbjct: 1 RSAANIVQVFKKAPPSATPYIAEIRSAVEKGSRLISSMQIKLFAKGEN--HKGGFGQTVK 58
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
A LPY+K ++PI IVFR LG V+D DIL HI YD +D +M+E +KP ++EAFVIQ++ VA
Sbjct: 59 ATLPYVKTDVPIGIVFRGLGIVSDEDILNHICYDRNDTQMLEKLKPCIEEAFVIQDREVA 118
Query: 298 LNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
L++IG+RG +++ +R+KYAR+I+QKE+LPH+ +D ETKKA+FLGYMVHR+L +L
Sbjct: 119 LDWIGSRGNSQSLSRPKRVKYARDIMQKELLPHISQTDGSETKKAFFLGYMVHRMLQCAL 178
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GRRE+DDRDH+ V Y QK ++ ++FNL L +K+
Sbjct: 179 GRREVDDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVFKYLQKCVENNREFNLTLGVKS 238
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
+T+GL+YSLATGNWGDQKKA ++AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AK
Sbjct: 239 TTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAK 298
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
PRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ + +ME LEE
Sbjct: 299 PRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPCEPIIDFMNQRNMEMLEEYE 358
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
P +ATK+FVNG WVG+HRDP L+ ++ LRR II EVS++RDIRDRE +I TD
Sbjct: 359 PLRSPNATKVFVNGVWVGVHRDPAHLVSNVQDLRRG-HIISHEVSLVRDIRDREFKIFTD 417
Query: 572 AGRICRPLLIAEN-------GSLLLKKRHIDNLKE---------RD---YNNYGWQVLVQ 612
AGR+CRPL + +N G+L+L K HI L+E RD GW LV
Sbjct: 418 AGRVCRPLFVIDNDTRSMNYGNLVLTKEHITRLEEDKEAAIGMDRDELEARQMGWDGLVN 477
Query: 613 SGVVEYIDTLEEETTMIAM 631
GVVEY+D EEET MI M
Sbjct: 478 QGVVEYVDAEEEETVMIVM 496
>gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Diploschistes muscorum]
Length = 901
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/507 (51%), Positives = 342/507 (67%), Gaps = 49/507 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V V+ D + Y EIRS +E +R S++ V +R K
Sbjct: 1 SEKVLIAQERSAANIVQVYKRSDDRIPYLAEIRSAVEKGTRLISSMSVKYHSRKDD---K 57
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+ G I LPY+K+EI + IVFRALG V+D DIL HI +D D +MMEM+KP ++EAF
Sbjct: 58 KSFGSSIKVTLPYVKEEIAVAIVFRALGVVSDEDILNHICFDRRDTQMMEMLKPCIEEAF 117
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
V+Q++ VAL+ IG R G +++RI++AR+I+QKE+LPH+ S+ ET+KA+FLGYMV
Sbjct: 118 VVQDREVALDHIGKRSNALGQPRDKRIRHARDIMQKELLPHISQSEGSETRKAFFLGYMV 177
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HR+L +LGRRE DDRDH+ V Y QK I+ +DF
Sbjct: 178 HRMLQVALGRREPDDRDHFGKKRLDLAGPLMASLFRSLFNRLTKDVLKYLQKCIEGNRDF 237
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N+ L +K+ +T+GL+YSLATGNW +QKKA Q +AGVSQVLNR TFAS+LSHLRR N+P+
Sbjct: 238 NIALGVKSTTLTNGLKYSLATGNWSEQKKAAQGKAGVSQVLNRYTFASTLSHLRRTNTPL 297
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VGS PI+EF+ + +
Sbjct: 298 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGSPGEPIIEFMVQRN 357
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P+ + TK+FVNG WVG+HRDP L T+ LRR+ ++I EVS+IRDIRD
Sbjct: 358 MEVLEEYEPTRSPNITKVFVNGVWVGVHRDPAHLYNTVLSLRRR-NMISHEVSLIRDIRD 416
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK------------ERDYNN 604
+E +I TDAGR+ RPL + +N G L+L K ++ L+ E+
Sbjct: 417 QEFKIFTDAGRVARPLFVIDNDKRSSRRGELVLSKELVNRLEDDRELPPDLDPDEKKEKY 476
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW+ LV+SG VEY+D EEET MIAM
Sbjct: 477 FGWEGLVKSGAVEYLDAEEEETVMIAM 503
>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 1222
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/718 (40%), Positives = 429/718 (59%), Gaps = 97/718 (13%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL--QAEAQHTSTEVET 60
++ W ++N+YF E L+RQQ+DSF+EFI+ +Q IV+D P + + ++ + S E
Sbjct: 11 EDDTWTLLNSYFKENNLIRQQIDSFNEFIESKIQDIVDDIPPLIVIDDSKKKTGSFEFSK 70
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR------ 114
+ +L+ Q+++SKPT E++G + P +ARLRN +YS+PLY DI+ T ++
Sbjct: 71 NRKLILRLGQLHISKPTFIEENGMTHSLRPIDARLRNFSYSSPLYCDISITTLQIAREKE 130
Query: 115 -QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
+ E +HQK+ +G++PIM++S +C+L+ L D+ + ECP D GGYFIINGSEKV
Sbjct: 131 EEREIFEKEEHQKTLLGRLPIMIKSRFCVLDKLLPGDMVKFKECPFDAGGYFIINGSEKV 190
Query: 174 LIAQEKMATNTVYVFSMKD-----SKYAYKT--------EIRSCLEHSSRPTSTLWVNMM 220
++ QE++A N VY+F K+ K + T E RS E S L V +
Sbjct: 191 MVGQEQLAWNHVYIFPKKEINKSSEKIVFYTNKGILFFAECRSVAEFGRWSPSLLTVKVC 250
Query: 221 A---------------RGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDIL 265
+SL G + AILPY K++IP+ +F+ALGF + +IL
Sbjct: 251 VTVFPKKKKNKSTKNDNQKESLIHLYGGLYLRAILPYFKKDIPVTWIFKALGFENENEIL 310
Query: 266 EHIIYDFDDPEMMEMVKPSLDE------------AFVIQEQNVALNFIGARGARPGVTKE 313
++ Y +D +++E+++ S+++ +F++ +Q AL IG ++ T+
Sbjct: 311 NYVCYGDEDEDLIEVIRYSIEDDRLTTANIFSNNSFIL-DQETALAVIGQHISKG--TQG 367
Query: 314 RRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----- 368
RIK A EILQKE LPH+G+ E +K +FLGY++++L+ +G+R+ DDRDHY
Sbjct: 368 IRIKQAYEILQKEFLPHIGIGQGFELRKGFFLGYIINKLMNTQIGKRKTDDRDHYGHKRL 427
Query: 369 ---------------------VRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGN 406
+R+ QK + K+F + +K+++IT G++++LATGN
Sbjct: 428 DVAGSLLSILFRQLLGKVIKDLRVSLQKKVSLHKNFQPIFDFLKSRLITTGIQFALATGN 487
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WG K+ +R GVSQVLNRLTF+S+LSHLRR+NSP GRDGKL KPRQLHNT WG+ICPA
Sbjct: 488 WGIDKQV--SRTGVSQVLNRLTFSSALSHLRRLNSPGGRDGKLTKPRQLHNTHWGLICPA 545
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLV+NLA+ A++++GS PILE LEE ++NL +I + + KIFVNGC
Sbjct: 546 ETPEGHACGLVRNLAMTAFVTIGSPSDPILELLEESKIKNLSKIGFGKVRQSFKIFVNGC 605
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG- 585
W+GIH +P L+ +RK RR I E+S D ++EIRI TD+GRI RPLL+ +
Sbjct: 606 WIGIHYNPLLLINLIRKARRSGK-IREEISFSIDNLEKEIRIFTDSGRISRPLLVVKKNN 664
Query: 586 ------------SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
S LL+KRHI+ LK NY + L++ G+VEYID EEE +IAM
Sbjct: 665 QYNRQNLGEKFFSFLLEKRHIEKLKGD--KNYLFSDLIKEGIVEYIDAEEEEMCLIAM 720
>gi|45545311|gb|AAS67503.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida parapsilosis]
Length = 892
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/496 (53%), Positives = 345/496 (69%), Gaps = 46/496 (9%)
Query: 176 AQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+ A N V VF S ++ EIRS +E SR S++ + + R +KS+ +
Sbjct: 5 AQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD----EKSSSAR 60
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E FVIQE+
Sbjct: 61 TIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQER 120
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYMV+RLLL
Sbjct: 121 EVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLL 179
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
+L R+E DDRDH+ + Y Q+ ++ K+FNL LA
Sbjct: 180 CALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKEFNLTLA 239
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PIGRDGK
Sbjct: 240 VKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 299
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PI FL +W +E LE
Sbjct: 300 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPISSFLRDWGLEPLE 359
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
+ PS DAT++FVNG WVG+HR+P L+ +R LRR D I EVSIIRDIR++E++I
Sbjct: 360 DYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNGD-ISPEVSIIRDIREKELKI 418
Query: 569 HTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN------NYGWQVLVQSGV 615
TDAGR+ RPL I ++ G L LKK H++ L E Y+ +Y W LV+ G+
Sbjct: 419 FTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHVNRLLESSYDGDEDEPSYTWSSLVREGI 478
Query: 616 VEYIDTLEEETTMIAM 631
VEY+D EEET MIAM
Sbjct: 479 VEYVDAEEEETIMIAM 494
>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
Length = 913
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/498 (51%), Positives = 346/498 (69%), Gaps = 42/498 (8%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S ++ EIRS +E + S V + R ++ ++G + A +PYIK +IPI +V
Sbjct: 9 SPISFLAEIRSAVEKGGKTISQFQVKLFHRN----QERSLGSVMKATIPYIKVDIPIWVV 64
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G+ +
Sbjct: 65 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLNR 124
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RR+LDDRDH+
Sbjct: 125 ERRLRYAQEILQKEMLPHVSMNEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKR 184
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K IT+GL+YSLATGN
Sbjct: 185 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 244
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPA
Sbjct: 245 WGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 304
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG
Sbjct: 305 ETPEGQACGLVKNLSLMSVISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGV 363
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN
Sbjct: 364 WMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQ 422
Query: 587 LLLKKRHIDNLKE------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
L+++K+HI L E +D + ++ + E T W LV+ G+
Sbjct: 423 LVIQKKHIKMLTEAADKSKQDEEEEREKAARGEPPMDPDGEKKPEYT----WDHLVRGGL 478
Query: 641 VEYIDTLEEETTMIAMSP 658
+E +D EEET MI M+P
Sbjct: 479 IELLDAEEEETVMICMTP 496
>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
squamosus]
Length = 898
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/477 (54%), Positives = 343/477 (71%), Gaps = 36/477 (7%)
Query: 185 VYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYI 243
VYVF+ + S ++ EIRS +E + S V + R K+ ++G + A +PYI
Sbjct: 1 VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRS----KERSLGNVMKATIPYI 56
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGA 303
K +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +DE FVIQ++ +AL+FIG
Sbjct: 57 KVDIPIWVVFRALGVISDRDILEHICYDLQDNQMLEMLKPCIDEGFVIQDREIALDFIGN 116
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
RG G+ +ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RR+LD
Sbjct: 117 RGTTIGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLD 176
Query: 364 DRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDG 397
DRDH+ V + QK ++ K+FNL LA+K IT+G
Sbjct: 177 DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRHLQKCVEMNKEFNLSLAVKHNTITNG 236
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
L+YSLATGNWGDQKK+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHN
Sbjct: 237 LKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHN 296
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
T WGM+CPAETPEG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A
Sbjct: 297 THWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEE-NTHASTP 355
Query: 518 ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICR 577
TK+FVNG W+G+HRDP L+ TLR+LRR+ D I EVS++RDIR+RE+R++TDAGR+CR
Sbjct: 356 CTKVFVNGVWMGVHRDPAGLVRTLRRLRRK-DDINCEVSVVRDIRERELRLYTDAGRVCR 414
Query: 578 PLLIAENGSLLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
PL I E LL++K+HI+NL KE Y W +++ GV+E +D EEET MI M
Sbjct: 415 PLFIVEEQQLLVQKKHIENLVRSKEDPSYEYNWDNMIKEGVIELLDAEEEETVMICM 471
>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
Length = 1028
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/505 (51%), Positives = 342/505 (67%), Gaps = 50/505 (9%)
Query: 174 LIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
+IAQE+ A NTV VF S Y EIRS +E SR S L + + +G + K
Sbjct: 1 MIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSA--KGGF 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
G I + LPYIK +IPI+IVFRALG V+D DIL HI YD +D M+EM+KP ++E FVIQ
Sbjct: 59 GPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQ 118
Query: 293 EQNVALNFIGARGA-RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL+FI RG+ + + ERR++YAREI+QKE+LPH+ S+ ET+KA+FLGYMVHR
Sbjct: 119 DREVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHR 178
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LL +LGRR++DDRDH+ ++ Y Q+ ++ ++ L
Sbjct: 179 LLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIYL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ +K +T GLRY+LATGNWG+QKKA A+AGVSQVL+R T+AS+LSHLRR N+PIGR
Sbjct: 239 NVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI++F+ + +ME
Sbjct: 299 DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+HR P L+ T++ LRR+ ++I EVS+IRDIR+RE
Sbjct: 359 VLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRR-NMISHEVSLIRDIRERE 417
Query: 566 IRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE------------RDYNNYG 606
+I TDAGR+CRPL + +N G+L+L K HI L+E R +G
Sbjct: 418 FKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDRRERYFG 477
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W LV+SGVVEY+D EEET MI M
Sbjct: 478 WDGLVKSGVVEYVDAEEEETIMIVM 502
>gi|45545337|gb|AAS67516.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Neofusicoccum mangiferae]
Length = 910
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/510 (51%), Positives = 347/510 (68%), Gaps = 51/510 (10%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF + S + EIRS +E SR S++ + + + L K
Sbjct: 1 SEKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLSSMTLKLYEK--PQLWK 58
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
G + A LPY+K +IPI IVFRALG V+D DI+ HI +D +D ++ME ++PS++E+
Sbjct: 59 EGQGACLYATLPYVKADIPIPIVFRALGIVSDEDIISHICFDKNDTQIMEAIRPSIEESV 118
Query: 290 VIQEQNVALNFIGARGARP--GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
+IQ++ AL+FIG RG+ P G TK R+K AR+I+QKE LPH+ ++ ETKKA+FLGY
Sbjct: 119 LIQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M++RLL LGRR+ DDRDH+ V Y +K I+ G+
Sbjct: 179 MIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVYNYLKKCIEAGR 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F+L+ A+K IT+GL+YSLATGNWGDQKKA ++AGVSQVLNR T++S+LSHLRR N+
Sbjct: 239 PFSLQSAVKQGTITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYSSTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++VGS +PI +F+ +
Sbjct: 299 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQDFMTQ 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ME LEE P+ +ATKIF+NG WVG+HRDP QL+ ++KLRR + +E+S+IRD+
Sbjct: 359 RNMELLEEYEPNVSPNATKIFINGVWVGVHRDPTQLVSVVKKLRRD-GTLSAEMSLIRDV 417
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK-------------ERD 601
RDRE +I TDAGR+CRPL I ++ G+L+L + HID L+ ERD
Sbjct: 418 RDREFKIFTDAGRVCRPLFIIDDDPFSPNKGNLVLAREHIDKLEADQEIDVSGMNDDERD 477
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW+ L+QSGVVEY+D EEE MI M
Sbjct: 478 EKRYGWKGLLQSGVVEYMDAEEEEVAMITM 507
>gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Mycosphaerella punctiformis]
Length = 935
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/510 (51%), Positives = 345/510 (67%), Gaps = 54/510 (10%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K + E+RS +E +R S+ V + Q++
Sbjct: 1 SEKVLIAQERSAANIVQVFKKKGTNTPVMAELRSAVERGTRLISSTTVKLY---NQAVNA 57
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+ GQ I LPYIK +IPI I+FRALG V+D DIL HI+ + +D +M+EM+KP L+EAF
Sbjct: 58 NNPGQTIKGSLPYIKTDIPIAIIFRALGVVSDEDILNHIV-NKEDTQMLEMLKPCLEEAF 116
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
V+Q+++ AL+FIG RG + G TK+RRI+YAR+I+QKE LPH+ + ETKKA+FLGYMV
Sbjct: 117 VVQDRDNALDFIGRRGQQTG-TKDRRIRYARDIMQKEFLPHISQEEGSETKKAFFLGYMV 175
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+R+L +LGR E DDRDH+ ++MY + ++ G+DF
Sbjct: 176 NRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKFVQLVKEMKMYLHRCVEGGRDF 235
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N+ LAIKT I+T GLRY LATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+PI
Sbjct: 236 NITLAIKTNILTSGLRYCLATGNWGDQKKASSAKAGVSQVLNRYTYASTLSHLRRTNTPI 295
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y++VG+ P+ +F+ +
Sbjct: 296 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPGEPLTDFMRQRG 355
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
M+ LEE P +TK+F+NG WVG+H++ QL TLR LRR+ ++ EV+IIRD+R+
Sbjct: 356 MDLLEEYDPVLEPKSTKVFINGTWVGVHKNAGQLTETLRSLRRK-GLLSFEVTIIRDVRE 414
Query: 564 REIRIHTDAGRICRPLLI-------AENGSLLLKKRHIDNLKERDYN------------- 603
REIR+ TDAGR+CRPL + AE GSL+L++ + L++ N
Sbjct: 415 REIRVFTDAGRVCRPLFVVDNKPDAAERGSLVLRQDQVAKLQQDQENAASLRGISEEDKA 474
Query: 604 --NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+YGW LV GVVEY+D EEET MI M
Sbjct: 475 LHSYGWMGLVNEGVVEYLDAEEEETAMIIM 504
>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
schweinitzii]
Length = 887
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 333/466 (71%), Gaps = 33/466 (7%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S + EIRS +E + S V M R ++ ++G + A +PYIK +IPI ++
Sbjct: 4 SPINFLAEIRSAVEKGGKTISQFQVKMYHRN----QERSLGNVMKATIPYIKVDIPIWVL 59
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+E++KP +D+ FVIQ++ VAL+FIG RG G+ +
Sbjct: 60 FRALGVISDRDILEHICYDMQDAQMLELLKPCIDDGFVIQDREVALDFIGNRGTTTGLNR 119
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERR++YA+EILQKEMLPH+ +++ E+KKAYF GYMVHRLLLA++ R +LDDRDH+
Sbjct: 120 ERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMVHRLLLAAMEREDLDDRDHFGKKR 179
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K IT+GL+YSLATGN
Sbjct: 180 LDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKHNTITNGLKYSLATGN 239
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPA
Sbjct: 240 WGDQKRTMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 299
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNL+LM+ I+VG+ +P++EFLEEW +E+LEE A S I TK+FVNG
Sbjct: 300 ETPEGQACGLVKNLSLMSCITVGTLSAPVIEFLEEWGLESLEENAHSTIP-CTKVFVNGV 358
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I +EVS++RDIR+RE+R++TDAGR+ RPL I EN
Sbjct: 359 WMGVHRDPANLVKTIKKLRRK-DDINAEVSVVRDIRERELRVYTDAGRVSRPLFIVENQQ 417
Query: 587 LLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LL K+HI+ + D W LV++G++E +D EEET MI M
Sbjct: 418 LLFTKKHINLMLSTDEEKKLKWSALVKTGLIEMLDAEEEETVMICM 463
>gi|120561273|gb|ABM27021.1| RNA polymerase II second largest subunit, partial [Monoblepharis
macrandra]
Length = 879
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/490 (51%), Positives = 349/490 (71%), Gaps = 37/490 (7%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+MA N VY+F S + + + EIRS +E +R S+ + M R K
Sbjct: 1 SEKVIIAQERMAANQVYIFTSNRPGGVSIQAEIRSQMEKGARKISSCAIKRMPR-----K 55
Query: 229 KSAIGQ-RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
+S GQ + + +P +K ++P++++FRALG ++DR+ILEH YDFDD +M+EM++PS++E
Sbjct: 56 RSTTGQMNLYSTVPLLKSDVPVVVLFRALGVLSDREILEHCCYDFDDSQMLEMLRPSIEE 115
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
IQE+ VAL+FIG R G+++++RI +A +ILQKE+LPH+G+ E +KA+FLGY
Sbjct: 116 GNEIQEREVALDFIGKRAQTMGLSRDKRIAFAAQILQKELLPHIGIQARSEGRKAWFLGY 175
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HRLLL +L RRE DDRDH+ + +K ++ +
Sbjct: 176 MIHRLLLCALERREADDRDHFGKKRLDLAGPLMANLFRMLFRRLTQDISRALRKAVESHR 235
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FN+ A++ +IIT GL++SLATGNWGDQ+K Q RAGVSQVL+R T+AS+LSHLRR+NS
Sbjct: 236 EFNMVSAVQHQIITRGLQFSLATGNWGDQRKMMQTRAGVSQVLSRYTYASTLSHLRRLNS 295
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGR+GKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALMAYISVGS P+++FL+E
Sbjct: 296 PIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSPVEPLVDFLQE 355
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W++E+LEE++ I D K+F+NG W+G+HR+PE+LM R RR++ I +EVS + D+
Sbjct: 356 WTLEDLEELSADDIRDKCKVFLNGVWIGVHRNPEELMRIFRDYRRKIS-ISAEVSAVWDV 414
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
R++E+R +DAGRICRPL + N L ++K HI L+ + + W LV +G+VEY+DT
Sbjct: 415 REKELRFLSDAGRICRPLFVVNNMQLEIRKGHIAKLQNQTWK---WGDLVSNGLVEYVDT 471
Query: 622 LEEETTMIAM 631
EEETTMIAM
Sbjct: 472 DEEETTMIAM 481
>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
Length = 936
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 263/508 (51%), Positives = 338/508 (66%), Gaps = 49/508 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K S EIRS E +R S++ + + +G Q K
Sbjct: 1 SEKVLIAQERSAANIVQVFKKKGSPTPIVAEIRSATEKGTRLLSSMQLKLYQKGEQK-KG 59
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+ I A LPYIK +IPI+IVFRALG V+D IL+ I YD +D ++ EM+KP L+EAF
Sbjct: 60 GILTGTIKATLPYIKADIPIVIVFRALGIVSDMQILDCICYDANDTQLREMIKPCLEEAF 119
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
V+Q++ AL+FIG RG + G KE+RI+YAR+ILQKE LPH+ + ET+KA+FLGYM+
Sbjct: 120 VVQDRENALDFIGKRGNQVG-GKEKRIRYARDILQKEFLPHISQREGSETRKAFFLGYMI 178
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+R+ LGR + DDRDH+ +R+Y + I++G+DF
Sbjct: 179 NRMCQVMLGRCDEDDRDHFGKKRLDLSGPLMAQVFRLKFTQLVRDMRVYLSRCIEQGRDF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL LA+K+ I+T GLRY LATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+PI
Sbjct: 239 NLTLAVKSNILTSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ PI+EF+ + +
Sbjct: 299 GRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMNQRN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P DATK+FVNG WVG+HRDP QL+ ++ LRR I E+S+IRD+R+
Sbjct: 359 MELLEEYEPKNNPDATKVFVNGVWVGVHRDPSQLVKVVQSLRRN-GTISFEISLIRDVRE 417
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL-------------KERDYN 603
RE +I TDAGR+ RPL + N G L L + HI L +ERD
Sbjct: 418 REFKIFTDAGRVMRPLFVVNNDPASPTKGQLTLNRSHISQLLNARETDTIGLSEEERDGT 477
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW+ L+ GVVEY+D EEE M+ M
Sbjct: 478 IYGWKNLISDGVVEYLDAEEEEVAMMVM 505
>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida tropicalis]
Length = 1020
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 273/523 (52%), Positives = 348/523 (66%), Gaps = 51/523 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R +
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD----E 56
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 57 KGVAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEG 116
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYM
Sbjct: 117 FVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYM 175
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
V+RLLL +L R+E DDRDH+ + Y Q+ ++ D
Sbjct: 176 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRCVENDSD 235
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 236 FNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 295
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVGS PIL FL ++
Sbjct: 296 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSSSEPILGFLRDF 355
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E LE+ PS D+T+IFVNG WVG+HRDP QL+ +R LRR DI EVSIIRDIR
Sbjct: 356 GLEVLEDYVPSNAPDSTRIFVNGVWVGVHRDPAQLVDYVRDLRRSGDI-SPEVSIIRDIR 414
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSGV 615
++E +I TDAGR+ RPL I ++ G L++ K HI L V
Sbjct: 415 EKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITKEHIRKL-----------VAEDMDD 463
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
E + E + W LV G+V Y+D EEET MIAMSP
Sbjct: 464 DELEEDEEGGESRKYTWSSLVSEGIVVYVDAEEEETIMIAMSP 506
>gi|59894383|gb|AAX11028.1| RNA polymerase II subunit [Zignoella ovoidea]
Length = 595
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 259/503 (51%), Positives = 339/503 (67%), Gaps = 46/503 (9%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQ++ A N V VF S +Y EIRS LE SR S+L + + +R + +
Sbjct: 1 KVLIAQKRSAANIVSVFKKPAGSNVSYVAEIRSALEKGSRLISSLQMRLYSRADNTSGRM 60
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
A + LPY+K EIPI IVFRALG V+D DIL HI YD +D +M+EM++P ++EAF
Sbjct: 61 A--NTVRTTLPYVKDEIPIAIVFRALGIVSDEDILNHICYDRNDSQMLEMLRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQ++ VAL+FIG RG G+ + RIK AR++LQKEMLPH+ S+ CET+KA+FLGYMVH
Sbjct: 119 IQDREVALDFIGKRGNTHGLARGNRIKAARDVLQKEMLPHISQSEGCETRKAFFLGYMVH 178
Query: 351 RLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFN 384
+LL +LGRR+ DDRDH+ ++ Y ++ ++ K F+
Sbjct: 179 KLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRKMTTDLQAYVKRCVNENKHFS 238
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIG
Sbjct: 239 LALGIKPSQLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIG 298
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
RDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+L+ Y+SVG+ PI+EF+ +M
Sbjct: 299 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLCYVSVGTPSEPIVEFMISRNM 358
Query: 505 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR 564
E LEE P +ATK+FVNG WVG+H+DP+ L+ + +LRRQ D I EVS++RDIRDR
Sbjct: 359 EVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSLVVELRRQ-DTISFEVSLVRDIRDR 417
Query: 565 EIRIHTDAGRICRPLLIAE----------NGSLLLKKRHIDNLK-ERDY-----NNYGWQ 608
E ++ +DAGR+ RPL + E G L L K HI ++ +R+ +GW+
Sbjct: 418 EFKVFSDAGRVMRPLFVVEQEENGKSGVPQGHLTLTKEHIQRIEMDREIGIGQPGYFGWK 477
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
L +GV+EY+D EEETTMIAM
Sbjct: 478 GLTDNGVIEYLDAEEEETTMIAM 500
>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
Length = 934
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/506 (50%), Positives = 342/506 (67%), Gaps = 47/506 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + ++G S +
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKG--SPE 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K + + LPY+++++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EA
Sbjct: 59 KGRLANTVSVTLPYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEA 118
Query: 289 FVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
F IQ++ +AL+FIG RG G + R++ A+++LQKEMLPH+ ++ CET+KA+FLGY
Sbjct: 119 FCIQDREIALDFIGKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGK 381
MVHRLL +LGRR+ DDRDH+ + Y ++ ID K
Sbjct: 179 MVHRLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRNVIRRMTQDLMSYMKRCIDTNK 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+F+L L IK +T+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+
Sbjct: 239 NFSLALGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WG++CPA+TPEG A GLVKNL+LM Y+SVG+ PI+EF+
Sbjct: 299 PIGRDGKLAKPRQLHNTHWGLVCPADTPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIA 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDI
Sbjct: 359 RGMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQGLRRK-NVISFEVSLVRDI 417
Query: 562 RDREIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLK-ERDYNNY----- 605
RDRE +I +DAGR+ RPL AE G+L+L K HI LK + +Y Y
Sbjct: 418 RDREFKIFSDAGRVMRPLFTVEQEPNGESGAEKGALILNKEHIGKLKLDTEYGKYHPDYW 477
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
GWQ L++SG +EY+D EEET MI M
Sbjct: 478 GWQGLLKSGAIEYLDAEEEETVMICM 503
>gi|89274906|gb|ABD65894.1| RNA polymerase II second largest subunit, partial [Steccherinum
laeticolor]
Length = 556
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/501 (50%), Positives = 344/501 (68%), Gaps = 32/501 (6%)
Query: 185 VYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYI 243
VYVF+ + S ++ EIRS +E + S V + R + +S G + A +PYI
Sbjct: 2 VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNTE---RSQPGNVMKATIPYI 58
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGA 303
K +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG
Sbjct: 59 KVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGN 118
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
RG G+ +ERR++YA+EILQKEMLPH+ + + E+KKAYF GYM+HRLLLA+L RR+LD
Sbjct: 119 RGTTTGLNRERRLRYAQEILQKEMLPHISMKEGSESKKAYFFGYMIHRLLLAALERRDLD 178
Query: 364 DRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDG 397
DRDH+ V Y QK ++ K+FNL LA+K IT+G
Sbjct: 179 DRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVEMHKEFNLALAVKHNTITNG 238
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
L+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHN
Sbjct: 239 LKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHN 298
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
WGM+ ETPEG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A SA
Sbjct: 299 HHWGMVXXXETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSATP- 357
Query: 518 ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICR 577
TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CR
Sbjct: 358 CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCR 416
Query: 578 PLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQ 637
PL I EN L+++K+H+ L E + ++ L ++ W L++
Sbjct: 417 PLFIVENQQLVIQKKHVKMLVEAADKLKDDEEEERARAARGEPPLSDDQKASYTWDNLIK 476
Query: 638 SGVVEYIDTLEEETTMIAMSP 658
G++E +D EEET MI M+P
Sbjct: 477 GGLIELLDAEEEETVMICMTP 497
>gi|89274892|gb|ABD65887.1| RNA polymerase II second largest subunit, partial [Irpex lacteus]
Length = 548
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/494 (51%), Positives = 347/494 (70%), Gaps = 41/494 (8%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S + EIRS +E + S V + R ++ ++G + A +PYIK +IPI +V
Sbjct: 5 SPINFLAEIRSAVEKGGKTISQFQVKLYHRN----QERSLGNVMKATIPYIKVDIPIWVV 60
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G+ +
Sbjct: 61 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLNR 120
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERR++YA+EILQKEMLPH+ +++ E+KKAYF GYM+HRL+LA+L RR+LDDRDH+
Sbjct: 121 ERRLRYAQEILQKEMLPHISMAEGAESKKAYFFGYMIHRLMLAALERRDLDDRDHFGKKR 180
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K IT+GL+YSLATGN
Sbjct: 181 LDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 240
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ A+AGVSQVLNR T+AS+LSHLRR ++P+GR+GK+AKPRQLHN WGM+CPA
Sbjct: 241 WGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCDTPLGREGKIAKPRQLHNHHWGMVCPA 300
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
ETPEG A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG
Sbjct: 301 ETPEGQACGLVKNLSLMSCISVGSISAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGV 359
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRD L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL + EN
Sbjct: 360 WIGVHRDASNLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFVVENQQ 418
Query: 587 LLLKKRHIDNLKERDYNNYGWQVLVQSG--VVEYIDTLEEETTMIAMWQVLVQSGVVEYI 644
L+++K+H++ + +G + +G V++ D +++ T + L++ G +E +
Sbjct: 419 LMIRKKHVEKVA------HGIPLYDAAGNPVMDPEDP-DKQLTDPYPFTNLIRDGGIEML 471
Query: 645 DTLEEETTMIAMSP 658
D EEET MI MSP
Sbjct: 472 DAEEEETVMICMSP 485
>gi|45545307|gb|AAS67501.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida glabrata]
Length = 885
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/513 (50%), Positives = 344/513 (67%), Gaps = 50/513 (9%)
Query: 173 VLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VL AQE+ A N V VF S ++ EIRS LE SR STL V + R +S+
Sbjct: 2 VLHAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGR------ESS 55
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++ FVI
Sbjct: 56 SARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVI 115
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM++R
Sbjct: 116 QDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINR 175
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +L R++ DDRDH+ + Y Q+ ++ DFN+
Sbjct: 176 LLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFNM 235
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PIGR
Sbjct: 236 KLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 295
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW ME
Sbjct: 296 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEWGME 355
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR++E
Sbjct: 356 PLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIREQE 414
Query: 566 IRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYN----------NYGWQV 609
++I TDAGR+ RPL I E+ L ++K H+ L +Y +Y W
Sbjct: 415 LKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYTWSS 474
Query: 610 LVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVE 642
L+ G+VEYID EEE+ +IAM ++ VE
Sbjct: 475 LLNEGLVEYIDAEEEESILIAMQPEDLEPTAVE 507
>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
culisetae]
gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
Length = 899
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/464 (55%), Positives = 323/464 (69%), Gaps = 35/464 (7%)
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
Y EIRS +E +SR STL + G+ I A +PYI+ E+P+++VFRAL
Sbjct: 14 YTAEIRSAMEGASRQASTLMLKK-----FGRSGGGGGKGIQATIPYIRSEVPVVVVFRAL 68
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRI 316
G VA +DILEHI YD +D EM+E K S++EAFVIQ++ V+L+FIG RG GV +E+RI
Sbjct: 69 GTVAAKDILEHICYDSNDSEMVEEFKASIEEAFVIQDREVSLDFIGKRGTTVGVNREKRI 128
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----- 371
KYAREILQKE LPHVG ET+K YFLGYMVHRLL L RR+ DDRDHY R
Sbjct: 129 KYAREILQKEFLPHVGTQPHNETRKTYFLGYMVHRLLQCVLERRDQDDRDHYGRKRLDLA 188
Query: 372 ---------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQ 410
Y QK I+ ++FNL +A+K+ IT GL+YSLATGNWGDQ
Sbjct: 189 GPLLAMLFRNLFKKMTRDMTRYLQKCIESRREFNLSMALKSNTITAGLKYSLATGNWGDQ 248
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
KKA Q+R GV+QVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPE
Sbjct: 249 KKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 308
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 530
G A GLVKNLALMA+I+VGS IL FLEEW+MENLEE+ ++AD+TKIFVNG WVGI
Sbjct: 309 GQACGLVKNLALMAHITVGSDSGSILMFLEEWAMENLEELVGDSLADSTKIFVNGVWVGI 368
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLK 590
H++ +L TL++LRR+++ E+SI+ D+R+REIRI TDAGR+CRPL + + L L
Sbjct: 369 HKEAVRLAATLKQLRRRLE-FSYELSIVHDVREREIRILTDAGRVCRPLFVVNHMRLALT 427
Query: 591 KRHIDNLKER---DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K + ++ R + + W L+ G+VEY+D EEET MI M
Sbjct: 428 KPVVAAIEARRLGERDAVRWHDLLSEGIVEYLDAEEEETAMIVM 471
>gi|59894429|gb|AAX11051.1| RNA polymerase II subunit [Strattonia carbonaria]
Length = 606
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/511 (50%), Positives = 337/511 (65%), Gaps = 47/511 (9%)
Query: 165 FIINGSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARG 223
FIINGSEKVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + +
Sbjct: 1 FIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKA 60
Query: 224 GQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKP 283
+ K + + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P
Sbjct: 61 DNA--KGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRP 118
Query: 284 SLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKA 342
++EAF IQ++ +AL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA
Sbjct: 119 CIEEAFCIQDREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKA 178
Query: 343 YFLGYMVHRLLLASLGRRELDDRDHYVR--------------------------MYAQKF 376
+FLGYMVH+LL LGRR++DDRDH+ + Y ++
Sbjct: 179 FFLGYMVHKLLQCVLGRRDVDDRDHFGKKRLDLAGPLLAKLFRGIVRRITQDLMQYMKRC 238
Query: 377 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHL 436
ID K F L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHL
Sbjct: 239 IDGNKHFTLALGIKAGTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHL 298
Query: 437 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 496
RR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM YISVG+ PI+
Sbjct: 299 RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYISVGTNADPII 358
Query: 497 EFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
EF+ +ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR +II EVS
Sbjct: 359 EFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSLVQSLRRS-NIISFEVS 417
Query: 557 IIRDIRDREIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNL-KERDYNNY 605
++RDIRDRE +I +DAGR+ RPL + E G L+L K I L K+++ Y
Sbjct: 418 LVRDIRDREFKIFSDAGRVMRPLFVVEQEDDGESKVEKGQLVLTKSQILKLEKDKEIGKY 477
Query: 606 -----GWQVLVQSGVVEYIDTLEEETTMIAM 631
GW L++ G VEY+D EEET MI M
Sbjct: 478 HPDYFGWNGLLREGCVEYLDAEEEETAMICM 508
>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cenococcum geophilum]
Length = 935
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 258/508 (50%), Positives = 344/508 (67%), Gaps = 50/508 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K + EIRS +E SR ST N+ + K
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGSRLISTF--NIKWAESSLIAK 58
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
A G AILPYI+ ++P+ +VFRALG V+D DIL HI+YD +D +M+E++KPS++E
Sbjct: 59 RAPGPFAYAILPYIRADVPMSVVFRALGVVSDEDILNHIVYDRNDTQMLELLKPSIEEGS 118
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
+IQ++ AL++I RG+ G TK++R+KYAR+I+Q+E LPH+ + +T+KA+FLGYM+
Sbjct: 119 MIQDRENALDWIAKRGSSTG-TKDKRLKYARDIMQREFLPHISQKEGQDTRKAFFLGYMI 177
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLL LGRR+ DDRDH+ V Y QK ++ ++F
Sbjct: 178 HRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFIKLTRDVYKYLQKCVENNQEF 237
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
++++A+K +IT+GL+YSLATGNWGDQKKA ++AGVSQVLNR T+AS+LSHLRR N+P+
Sbjct: 238 SIQMAVKASLITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPV 297
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS+ +PI +F+ + +
Sbjct: 298 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDFMSQRN 357
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P ATK+FVNG WVG+H P QL+ +++LRR + E+S+IRDIRD
Sbjct: 358 MELLEEYDPVVNPSATKVFVNGVWVGVHSQPSQLVTVVQELRRN-GTLSYEMSLIRDIRD 416
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL---KERDYNN--------- 604
RE +I TDAGR+ RPL + EN GSL+L K HI+ L KE D +
Sbjct: 417 REFKIFTDAGRVMRPLFVIENNPTKTNRGSLVLNKTHIEKLHEDKEIDVSGLNDEDAEKA 476
Query: 605 -YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW+ L+ SGVVEY+D EEET MI M
Sbjct: 477 KFGWKGLLHSGVVEYLDAEEEETAMIIM 504
>gi|120561263|gb|ABM27016.1| RNA polymerase II second largest subunit, partial [Catenaria
anguillulae]
Length = 892
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/510 (52%), Positives = 349/510 (68%), Gaps = 61/510 (11%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKV+IAQE+ ATNTV+VFS AY+ EIRS + R S+ V M +
Sbjct: 1 SEKVIIAQERTATNTVFVFSKPGG--AYQAEIRSQSDAGQRTLSSFIVRMDKQ------- 51
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+RI LPYI++EIP+ IVFRALG +D+ ILE I Y FDD +M+EM+KP +++A
Sbjct: 52 ----RRITCSLPYIQEEIPLPIVFRALGVHSDKQILETICYHFDDDQMLEMLKPCIEQAD 107
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ+Q +AL+ IG RG + +++RI+YAR++L++E LPH+G + CET+KA+F+GYMV
Sbjct: 108 VIQDQELALDHIGRRGRVTNMHRDQRIRYARDLLERETLPHIGTTPGCETRKAWFIGYMV 167
Query: 350 HRLLLASLGRRELDDRDHY---------------VRMYAQKF-----------IDRGKD- 382
HR+LLA+LGRR +DDRDH+ + + KF I+R +
Sbjct: 168 HRMLLAALGRRPIDDRDHFGKKRLDLAGPLLASLFKTFFSKFVKDITREFTKSIERSQGP 227
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
F+L +K IIT+GLRY+LATGNWGDQKK + RAGVSQVLNR TFAS+LSHLRR+N+P
Sbjct: 228 FHLASVVKPGIITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRLNTP 287
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALMAYISVG+ P++E L+E+
Sbjct: 288 IGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGTSAEPVVEALQEY 347
Query: 503 SMENLEEIA-PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV-----SEVS 556
+ENLEEI+ SA+ADATK+FVNG WVGIH DP L TLR++RR D+ EVS
Sbjct: 348 GIENLEEISDASAVADATKVFVNGAWVGIHSDPADLFKTLREMRRMGDLTPPHLDEPEVS 407
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAENGS--LLLKKRHI----------DNLKERDY-- 602
I+RDIRD EIRI+TD GRI RPL + + L L+K H+ D++KE D
Sbjct: 408 IVRDIRDNEIRIYTDPGRIMRPLFVVNEDTQRLKLRKAHVAAALEALKVDDDVKETDEMR 467
Query: 603 -NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ W+ L++ GV+E +DT EEE MI+M
Sbjct: 468 DSLMSWRNLLRQGVLELMDTEEEEMAMISM 497
>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
Length = 942
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/509 (50%), Positives = 341/509 (66%), Gaps = 51/509 (10%)
Query: 171 EKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
+KVLIAQE+ A N V VF + S + EIRS +E SR S++ + + + L K
Sbjct: 1 DKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLSSMTLKLYEK--PQLWKE 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
G + A LPY+K ++PI IVFRALG V+D DI+ HI +D +D ++ME ++PS++E+ +
Sbjct: 59 GQGACLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDTQLMEAIRPSIEESVL 118
Query: 291 IQEQNVALNFIGARGARP--GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
IQ++ AL+FIG RG+ P G TK R+K AR+I+QKE LPH+ ++ ETKKA+FLGYM
Sbjct: 119 IQDRVSALDFIGRRGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFFLGYM 178
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLL LGRR+ DDRDH+ V Y +K ++ G+
Sbjct: 179 IYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVFSYLKKCVEAGRP 238
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
F+L+ A+K IT+GL+YSLATGNWGDQKKA A+AGVSQVLNR T++S+LSHLRR N+P
Sbjct: 239 FSLQSAVKQGTITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYSSTLSHLRRTNTP 298
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++VGS +PI +F+ +
Sbjct: 299 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQDFMTQR 358
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ME LEE P+ ATKIF+NG WVG+HRDP QL+ ++KLRR + E+S+IRD+R
Sbjct: 359 NMELLEEYEPNVSPHATKIFINGVWVGVHRDPTQLVSVVKKLRRD-GTLSPEMSLIRDVR 417
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL-------------KERDY 602
DRE +I TDAGR+CRPL I ++ G+L L + HID L +ER
Sbjct: 418 DREFKIFTDAGRVCRPLFIIDDDPFSPNKGNLALTREHIDKLEADQEIDVSGLSDEERQE 477
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGWQ L+ SGVVEY+D EEE MI M
Sbjct: 478 KRYGWQGLLHSGVVEYMDAEEEEVAMIVM 506
>gi|6606097|gb|AAF19061.1|AF107789_1 DNA-dependent RNA polymerase II RPB140 [Neurospora crassa]
Length = 903
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/508 (50%), Positives = 339/508 (66%), Gaps = 51/508 (10%)
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + Q+
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQN-- 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K + + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EA
Sbjct: 59 KGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEA 118
Query: 289 FVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
F IQ++ VAL++IG RG G+ + RIK A+E+LQKE+LPH+ ++ CET+KA+FLGY
Sbjct: 119 FCIQDREVALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQAEGCETRKAFFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGK 381
MVH+LL LGRR+ DDRDH+ + Y ++ +D K
Sbjct: 179 MVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNK 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F+L L IK +T+GL+YSLATGNWGDQKKA + AGVSQVLNR TF+S+LSHLRR N+
Sbjct: 239 HFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ PI+EF+
Sbjct: 299 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIA 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ +II EVS++RDI
Sbjct: 359 RNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRK-NIISFEVSLVRDI 417
Query: 562 RDREIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLKE--------RDYN 603
RDRE +I +DAGR+ RPL + E G L+L K HI L++ DY
Sbjct: 418 RDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIRRLEQDKELAKYHEDY- 476
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GWQ L++SG +EY+D EEET MI M
Sbjct: 477 -FGWQGLLESGAIEYLDAEEEETAMICM 503
>gi|59894407|gb|AAX11040.1| RNA polymerase II subunit [Neurospora pannonica]
Length = 597
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/506 (50%), Positives = 337/506 (66%), Gaps = 51/506 (10%)
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + Q+ K
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQN--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG GV + RIK A+E+LQKE+LPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNTGVNRNSRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ +D K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ +II EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRK-NIISFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLKE--------RDYNNY 605
RE +I +DAGR+ RPL + E G L+L K HI L++ DY +
Sbjct: 418 REFKIFSDAGRVMRPLFVVEQEDNSDSGVEKGQLILTKEHIRRLEQDKELGKYHEDY--F 475
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
GWQ L++SG +EY+D EEET MI M
Sbjct: 476 GWQGLLESGAIEYLDAEEEETAMICM 501
>gi|55831373|gb|AAV66545.1| RNA polymerase II second largest subunit [Fomitiporia mediterranea]
Length = 898
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 261/509 (51%), Positives = 344/509 (67%), Gaps = 63/509 (12%)
Query: 200 EIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFV 259
EIRS +E + S V M RG ++ A G + A +PYIK +IPI +VFRALG +
Sbjct: 2 EIRSAVEQGGKTISQFQVKMYHRG----QERASGSVMKATIPYIKVDIPIWVVFRALGVI 57
Query: 260 ADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYA 319
+DRDILEHI +D +D M+EM+KP +D+ FVIQ++ VAL+FIG RG G+ +++R++YA
Sbjct: 58 SDRDILEHICFDMNDSSMLEMLKPCIDDGFVIQDREVALDFIGNRGTATGLNRDKRLRYA 117
Query: 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------- 368
+EILQKEMLPH+ +++ E+KKAYF GYM+HRLLLA+L RRELDDRDH+
Sbjct: 118 QEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPL 177
Query: 369 ---------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
V Y QK ++ K+FN+ +AIKT+ +T+GL+YSLATGNWGDQKKA
Sbjct: 178 LTGLFRMLFRKLTKDVYRYLQKCVETHKEFNINMAIKTQTLTNGLKYSLATGNWGDQKKA 237
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A
Sbjct: 238 MSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQA 297
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNLALMA ISVGS P+++FLEEW +E LEE S + TK+FVNG W+G+ RD
Sbjct: 298 CGLVKNLALMAVISVGSVSGPVIDFLEEWGLETLEENTQS--TNLTKVFVNGVWLGVCRD 355
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P ++ TLR LRR D SEVSI+RDIR+REIRI++DAGR+ RPL I E+ L LK++H
Sbjct: 356 PLNMVNTLRTLRRMQD-FDSEVSIVRDIREREIRIYSDAGRVLRPLFIVEDHKLKLKRQH 414
Query: 594 IDNLKERDYNNYGWQVLVQSGV---------VEYIDTL--EEETTMIA------------ 630
+ L+E+ W++ + V V +T+ EEE I
Sbjct: 415 LRWLQEK------WRIEERPYVPREERNKEEVSEGETVADEEEGRPIMRDERRVKRKKKP 468
Query: 631 -MWQVLVQSGVVEYIDTLEEETTMIAMSP 658
W L++ GV+E +D EEET MI M+P
Sbjct: 469 FTWSSLIRDGVIELLDAEEEETVMICMTP 497
>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Cryphonectria parasitica]
Length = 941
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 262/507 (51%), Positives = 336/507 (66%), Gaps = 48/507 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF + S Y+ EIRS LE SR S+ + + A+G
Sbjct: 1 SEKVLIAQERSAANIVQVFKKAQPSPDLYQAEIRSALEKGSRLISSTTLKLKAKG--ETA 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ GQ I A LPY+K+EIPI IVFRALG ++D DIL + YD D +MMEM++P ++EA
Sbjct: 59 RGGFGQTIQATLPYVKKEIPIAIVFRALGVISDEDILNAVCYDRQDTQMMEMLRPCIEEA 118
Query: 289 FVIQEQNVALNFIGAR-GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
F IQE+ VAL++I R + +K +R+K A+EILQKE+LPH+ ++ CET+KAYFLGY
Sbjct: 119 FAIQEREVALDYIAKRSNSGHSASKIQRMKNAKEILQKELLPHIAQTEGCETRKAYFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHYVR--------------------------MYAQKFIDRGK 381
M H+LL +LGRR+ DDRDH+ + Y ++ + GK
Sbjct: 179 MTHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVKKLTGDMMAYMKRCVSEGK 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F+L L I+ +T+GL+YSLATGNWG+QKKA + AGVSQVLNR TFAS+LSHLRR N+
Sbjct: 239 HFDLALGIRHSTLTNGLKYSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI +F+ +
Sbjct: 299 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPIKDFMVQ 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ME LEE P A DATKIF+NG WVG+H P L+ +++LRR+ II EVS++RDI
Sbjct: 359 RNMEVLEEYEPGASPDATKIFINGTWVGVHSQPAHLVTLVQELRRRC-IISHEVSLVRDI 417
Query: 562 RDREIRIHTDAGRICRPLLIA-----ENGS----LLLKKRHIDNL--------KERDYNN 604
RDRE +I +DAGR+ RPL + EN S L L K H L K+ D +
Sbjct: 418 RDREFKIFSDAGRVMRPLFVVNTPDNENRSRRRDLALTKEHAGVLRMMPKYSRKKDDEDY 477
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW L SGV+EY+D EEET MI M
Sbjct: 478 FGWDGLQNSGVIEYLDAEEEETAMICM 504
>gi|89274880|gb|ABD65881.1| RNA polymerase II second largest subunit, partial [Nia vibrissa]
Length = 524
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/466 (53%), Positives = 329/466 (70%), Gaps = 33/466 (7%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S + EIRS +E + S V M R ++ ++G + A +PYIK +IPI +V
Sbjct: 4 SPLNFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNLMKATIPYIKVDIPIWVV 59
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G+++
Sbjct: 60 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSR 119
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
+RRI+YA+EILQKEMLPH+ +++ E+KKAYF GYMVHRLLLA+L RRELDDRDH+
Sbjct: 120 DRRIRYAQEILQKEMLPHISMTEGSESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKR 179
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K + IT+GL+YSLATGN
Sbjct: 180 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETRKEFNLSLAVKHQTITNGLKYSLATGN 239
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHN WGM+
Sbjct: 240 WGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNHHWGMVXXX 299
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
PEG A GLVKNLALMA I+VGS +P+++FLEEW +E+LEE A S+ TK+FVNG
Sbjct: 300 XXPEGQACGLVKNLALMACITVGSYSAPVIDFLEEWGLESLEENAHSSTP-CTKVFVNGV 358
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+RI+TD GR+ RPL I +N
Sbjct: 359 WMGVHRDPANLVRTIKKLRRKCD-INPEVSVVRDIRERELRIYTDPGRVSRPLFIVQNQE 417
Query: 587 LLLKKRHIDNLKERD-YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L L K+HI+ + D W+ L++ G +E +D EEET MIAM
Sbjct: 418 LALTKKHIEAITSDDPEKKLSWEGLIKIGAIEMLDAEEEETVMIAM 463
>gi|51472087|gb|AAU04464.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 595
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/502 (50%), Positives = 333/502 (66%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M +G S K I
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEAS--KGRI 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDFIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLK-ERDYNNY-----GWQV 609
+I +DAGR+ RPL + AE G L+L K HI L+ +++ Y GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDVGETGAERGQLILTKAHIGKLEGDKELGKYHPQYWGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 LRASGAIEYLDAEEEESAMICM 499
>gi|59894427|gb|AAX11050.1| RNA polymerase II subunit [Sordaria macrospora]
Length = 600
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/506 (50%), Positives = 335/506 (66%), Gaps = 51/506 (10%)
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + Q+ K
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQN--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG G + R+K A+E+LQKE+LPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNTGANRNSRVKAAKEMLQKELLPHISQAEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ +D K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ +II EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRK-NIISFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLKE--------RDYNNY 605
RE +I +DAGR+ RPL E G L+L K HI L++ DY +
Sbjct: 418 REFKIFSDAGRVMRPLFTVEQEDNGDSGVEKGQLILTKEHIRRLEQDKELGKYHEDY--F 475
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
GWQ L++SG +EY+D EEET MI M
Sbjct: 476 GWQGLLESGAIEYLDAEEEETAMICM 501
>gi|51472085|gb|AAU04463.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 597
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/502 (50%), Positives = 333/502 (66%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M +G S K I
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEAS--KGRI 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVSMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLK-ERDYNNY-----GWQV 609
+I +DAGR+ RPL + AE G L+L K HI L+ +++ Y GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDVGETGAEKGQLILTKAHIGKLEGDKELGKYHPQYWGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 LRASGAIEYLDAEEEESAMICM 499
>gi|51472095|gb|AAU04468.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472103|gb|AAU04472.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472109|gb|AAU04475.1| RNA polymerase II subunit [Lasiosphaeria ovina]
Length = 597
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/504 (50%), Positives = 334/504 (66%), Gaps = 47/504 (9%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M +G + K
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPA--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
I + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RIAGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ ID K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRD
Sbjct: 359 MEILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLK-ERDYNNY-----GW 607
RE +I +DAGR+ RPL + E G L+L K HI L+ +++ Y GW
Sbjct: 418 REFKIFSDAGRVMRPLFVVETEDVGETGVEKGQLILSKAHIGKLEADKELGKYHPDYWGW 477
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 NGLRASGAIEYLDAEEEESAMICM 501
>gi|59894403|gb|AAX11038.1| RNA polymerase II subunit [Linocarpon appendiculatum]
Length = 588
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/504 (51%), Positives = 336/504 (66%), Gaps = 55/504 (10%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S +Y EIRS LE SR S+L + + ++G
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSNVSYTAEIRSALEKGSRLISSLQMRLYSKGNT----- 55
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ LPY+K EIP+ IVFRALG V+D DIL HI YD +D +M+EM++P ++EAF
Sbjct: 56 -----VRTTLPYVKDEIPLAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFC 110
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ +AL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 111 IQDREIALDFIGKRGNGNTGQNRANRIRGAKDVLQKEMLPHIAQTEGCETRKAFFLGYMV 170
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL +LGRR+ DDRDH+ + Y ++ ID K F
Sbjct: 171 HKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVRRLTQDLMGYIKRCIDTQKLF 230
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TF+S+LSHLRR N+PI
Sbjct: 231 SLALGIKPANLTNSLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPI 290
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI++F+ +
Sbjct: 291 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPAEPIIDFMVARN 350
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATKIFVNG WVG+H+DP+ L+ ++ LRRQ +++ EVS++RDIRD
Sbjct: 351 MEVLEEYEPLRYPNATKIFVNGTWVGVHQDPKHLVTLVQGLRRQ-NVVSFEVSLVRDIRD 409
Query: 564 REIRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLKE-----RDYNNY-GW 607
RE +I +DAGR+ RPL + E G L+L K HI L++ R + NY GW
Sbjct: 410 REFKIFSDAGRVMRPLFVIEQEENADSGVEPGRLILNKDHIRRLEDDKELGRYHENYFGW 469
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
+ L SGVVEY+D EEET MI M
Sbjct: 470 EGLRTSGVVEYLDAEEEETAMICM 493
>gi|51472117|gb|AAU04479.1| RNA polymerase II subunit [Lasiosphaeria sorbina]
Length = 599
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/505 (50%), Positives = 333/505 (65%), Gaps = 49/505 (9%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M + + K
Sbjct: 1 KVLIAQERSAANIVQVFKKPSGSSVSYQAEIRSALEKGSRLISSLQMKMHTKSEPT--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D M+E ++P ++EAF
Sbjct: 59 RLSGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTPMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDFIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ ID K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVIRRMTQDLMGYMKRCIDTNKHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRD
Sbjct: 359 MEILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLKERDY-------NNYG 606
RE +I +DAGR+ RPL + E G L+L K HI+ L ERD + +G
Sbjct: 418 REFKIFSDAGRVMRPLFVVETEGVGETGVEKGQLILSKDHIEKL-ERDKELGKYHPDYWG 476
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W L SG +EY+D EEE+ MI M
Sbjct: 477 WNGLRASGAIEYLDAEEEESAMICM 501
>gi|59894365|gb|AAX11019.1| RNA polymerase II subunit [Cercophora macrocarpa]
Length = 595
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/506 (50%), Positives = 335/506 (66%), Gaps = 51/506 (10%)
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + S K
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKA--SSDKG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+++++ + IVFRALG V+D DIL HI YD +D +M+E ++P ++EAFV
Sbjct: 59 RLAGGVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRNDTQMLEALRPCIEEAFV 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDFIGKRGNGNAGQNRSNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL +LGRR+ DDRDH+ + Y ++ ID K F
Sbjct: 179 HKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMSYMKRCIDTNKQF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKSCTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMTARN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSLVQGLRRR-NVISFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAE----------NGSLLLKKRHIDNLK--------ERDYNNY 605
RE +I +DAGR+ RPL E G L+L K HI L+ DY +
Sbjct: 418 REFKIFSDAGRVMRPLFTVEQEEAREHGVDKGQLILNKEHIQKLEVDKQLGRYHPDY--W 475
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
GW L+QSG +EY+D EEET MI M
Sbjct: 476 GWSGLLQSGAIEYLDAEEEETAMICM 501
>gi|51472093|gb|AAU04467.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 597
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/504 (50%), Positives = 333/504 (66%), Gaps = 47/504 (9%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M + S K
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPS--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RLAGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ ID K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRD
Sbjct: 359 MEILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLK-ERDYNNY-----GW 607
RE +I +DAGR+ RPL + E G L+L K HI L+ +++ Y GW
Sbjct: 418 REFKIFSDAGRVMRPLFVVETEEVGETGVEKGQLILSKEHIGKLEADKELGKYHPDYWGW 477
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 NGLRASGAIEYLDAEEEESAMICM 501
>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
cucurbitacearum]
Length = 940
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 255/521 (48%), Positives = 345/521 (66%), Gaps = 45/521 (8%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTL---WV-NMMARGGQ 225
SEKVLIAQE+ A N V VF K + EIRS +E +R S+ W N +A G
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLASG-- 58
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
K G A LPYIK ++P+ IVFR+LG V+D +IL HI+YD D +M+E++KPS+
Sbjct: 59 ---KRMPGPFAYATLPYIKADVPMAIVFRSLGIVSDEEILGHIVYDRTDTQMLELLKPSI 115
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
+E V+Q++ AL+FI RGA G TK+RR+K+AR+I+Q+E LPH+ + +T+KAYF
Sbjct: 116 EEGSVVQDRESALDFIARRGATQG-TKDRRLKFARDIMQREFLPHISQREGQDTRKAYFF 174
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GYM+HR+L LGRR+ DDRDH+ V Y Q+ ++
Sbjct: 175 GYMIHRMLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVEN 234
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
DFN+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR
Sbjct: 235 NSDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRT 294
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+P+GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM Y+SVGS +PI +F+
Sbjct: 295 NTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIADFM 354
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
+ +M+ LEE + DATK+FVNG WVG+H + +QL+ T+++LRR + E+S+IR
Sbjct: 355 GKRNMQLLEEYDQNQNPDATKVFVNGVWVGVHNNAQQLVSTVQELRRN-GTLSYEMSLIR 413
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYI 619
DIRDRE +I TDAGR+ RPL + +N + H+ +N + LVQ +
Sbjct: 414 DIRDREFKIFTDAGRVMRPLFVVQNDVTKDDRNHLV------FNQDHYNKLVQEQQAQAT 467
Query: 620 DTL--EEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ EE+T + W+ L+Q GV+EY+D EEET MI MSP
Sbjct: 468 AGIGEEEKTALTYGWKGLIQDGVIEYLDAEEEETAMIVMSP 508
>gi|45545357|gb|AAS67526.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Xanthoria polycarpa]
Length = 893
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/514 (49%), Positives = 337/514 (65%), Gaps = 52/514 (10%)
Query: 179 KMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+ A N V VF + Y EIRS LE SR S+L V + + K G I+
Sbjct: 1 RSAANIVQVFKKSGTNTPYIAEIRSALEKGSRLISSLSVQLTT---LAKTKEGGGHTIMV 57
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+PYI ++P MI+FRALG V+D DIL HI YD D +M+EM+KP L+EA++IQ++ VAL
Sbjct: 58 DMPYIVPKVPAMILFRALGVVSDEDILNHICYDRADGDMLEMLKPPLEEAWLIQDREVAL 117
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+F+G RG +++ RIK+AR++LQKE+LPH+ ++ ET+KA+FLGYM+HR+L +LG
Sbjct: 118 DFLGKRGKNQKMSRNERIKFARDVLQKELLPHISQTEGSETRKAFFLGYMIHRMLQCALG 177
Query: 359 RRELDDRDHY---------------VRM-----------YAQKFIDRGKDFNLELAIKTK 392
RR++DDRDH+ RM Y QK ++ ++FNL L +K
Sbjct: 178 RRDVDDRDHFGKKRLDLAGPLLAGLFRMLFQKLTKDIYKYLQKCVESNREFNLALGVKQN 237
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
++ GL+YSLATGNWGDQKKA A+AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKP
Sbjct: 238 TLSSGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKP 297
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WG++CPAETPEG A GLVKNLALM YI+VG+ PI+++L ME+LEE P
Sbjct: 298 RQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPADPIVDYLTNRGMESLEEYEP 357
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
+ ATK+FVNG W+G H DP L+ ++++RR+ II E S++RDIRDRE +I TDA
Sbjct: 358 TRAPHATKVFVNGTWIGCHNDPAHLVTHIQEIRRK-GIIAHEASLVRDIRDREFKIFTDA 416
Query: 573 GRICRPLLIAEN-------GSLLLKKRHIDNLK-ERDYNNYGWQVLVQSGVVEYIDTLEE 624
GR+CRPL + +N G+L L K + L+ ERD +V +D EE
Sbjct: 417 GRVCRPLFVIDNDPKSENNGNLALTKDMVQKLEDERD-------------MVLTMDP-EE 462
Query: 625 ETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ W+ LV SG VEY+D EEET MIAM+P
Sbjct: 463 RAEQVIGWEALVDSGAVEYVDAEEEETIMIAMTP 496
>gi|86559349|gb|ABD04082.1| RNA polymerase II second largest subunit, partial [Serpula
himantioides]
Length = 526
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/465 (53%), Positives = 327/465 (70%), Gaps = 36/465 (7%)
Query: 197 YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRAL 256
+ EIRS +E + S V M R ++ ++G + A +PYIK +IPI +VFRAL
Sbjct: 4 FLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLGNVMKATIPYIKVDIPIWVVFRAL 59
Query: 257 GFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRI 316
G ++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG G+++ERRI
Sbjct: 60 GVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDREVALDFIGNRGTTTGLSRERRI 119
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-------- 368
+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RRELDDRDH+
Sbjct: 120 RYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLA 179
Query: 369 ------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQ 410
V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQ
Sbjct: 180 GPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQ 239
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
KK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHN WGM
Sbjct: 240 KKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNHHWGMXXXXXXXX 299
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGI 530
VKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+
Sbjct: 300 XXXXXXVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGV 358
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLK 590
HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+
Sbjct: 359 HRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQ 417
Query: 591 KRHIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K+HI L ++ D Y W+ LV+ G++E +D EEET MI+M
Sbjct: 418 KKHIKWLNQGYRDDDGEEYKWEHLVKGGIIELLDAEEEETVMISM 462
>gi|51472105|gb|AAU04473.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472107|gb|AAU04474.1| RNA polymerase II subunit [Lasiosphaeria ovina]
Length = 597
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 332/502 (66%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M +G + K I
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPA--KGRI 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLK-ERDYNNY-----GWQV 609
+I +DAGR+ RPL + E G L+L K HI L+ +++ Y GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDVGETGVEKGQLILSKAHIGKLEADKELGKYHPDYWGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 LRASGAIEYLDAEEEESAMICM 499
>gi|51472097|gb|AAU04469.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472099|gb|AAU04470.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472101|gb|AAU04471.1| RNA polymerase II subunit [Lasiosphaeria ovina]
gi|51472111|gb|AAU04476.1| RNA polymerase II subunit [Lasiosphaeria ovina]
Length = 595
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/502 (50%), Positives = 332/502 (66%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M +G + K I
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPA--KGRI 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLK-ERDYNNY-----GWQV 609
+I +DAGR+ RPL + E G L+L K HI L+ +++ Y GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDVGETGVEKGQLILSKAHIGKLEADKELGKYHPDYWGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 LRASGAIEYLDAEEEESAMICM 499
>gi|51472115|gb|AAU04478.1| RNA polymerase II subunit [Lasiosphaeria rugulosa]
Length = 597
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/503 (50%), Positives = 332/503 (66%), Gaps = 49/503 (9%)
Query: 174 LIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M + L K +
Sbjct: 1 LIAQERSAANIVQVFKKPPGSSVSYQAEIRSALEKGSRLISSLQMRMHTKA--ELTKGRL 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 AGTVSVTLPYVKEDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDFIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMSYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAAEPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLKERDY-------NNYGWQ 608
+I +DAGR+ RPL + E G L+L K HI+ L ERD + +GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDIGETGVERGQLILSKDHIERL-ERDKELGKYHPDYWGWN 476
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 477 GLRASGAIEYLDAEEEESAMICM 499
>gi|59894349|gb|AAX11011.1| RNA polymerase II subunit [Camarops amorpha]
Length = 596
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/504 (50%), Positives = 334/504 (66%), Gaps = 51/504 (10%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF +Y EIRS LE SR S L + + ++G S K I
Sbjct: 1 LIAQERSAANIVQVFKKPAGGPVSYSAEIRSALEKGSRLISQLQMRLYSKGDSSSGK--I 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K EIP+ IVFRALG V+D DIL HI YD D +M+EM++P ++EAF IQ
Sbjct: 59 ANTVRTTLPYVKDEIPLAIVFRALGVVSDEDILNHICYDRKDFQMLEMLRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL+FIG RG G + RI+ AR++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDFIGKRGNGNTGQNRANRIRAARDVLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL +LGRR+ DDRDH+ + Y ++ ID+ K F L
Sbjct: 179 LLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRNIVRKMTQDLMSYIKRCIDQQKHFTL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK ++T L+YSLATGNWG+QKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKHTMLTSALKYSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ PI++F+ +ME
Sbjct: 299 DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDFMIARNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATKIFVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 VLEEYEPLRYPNATKIFVNGTWVGVHQDPKHLVSLVQGLRRK-NVISFEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIA----------ENGSLLLKKRHIDNLKER--------DYNNYGW 607
+I +DAGR+ RPL + E G L+L K HI L++ DY +GW
Sbjct: 418 FKIFSDAGRVMRPLFVVEQDDNAESGIEKGRLILNKDHIRRLEDDKELGKYHPDY--WGW 475
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
+ L +SGV+EY+D EEET MI M
Sbjct: 476 KGLQESGVIEYLDAEEEETAMICM 499
>gi|45120576|gb|AAO64673.2| RNA polymerase II subunit RPB2, partial [Polyporus arcularius]
Length = 750
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/468 (52%), Positives = 327/468 (69%), Gaps = 35/468 (7%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S ++ EIRS +E + S V + R ++ ++G + A +PYIK +IPI +V
Sbjct: 2 SPISFLAEIRSAVEKGGKTISQFQVKLYHRS----QERSLGNVMKATIPYIKVDIPIWVV 57
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +DE FVIQ++ +AL++IG RG G+ +
Sbjct: 58 FRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDREIALDYIGNRGTTTGLNR 117
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
ERR++YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLLLA+L RR+LDDRDH+
Sbjct: 118 ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKR 177
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K IT+GL+YSLATGN
Sbjct: 178 LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGN 237
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQL
Sbjct: 238 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLXXXXXXXXXXX 297
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
PEG A GLVKNL+LM+ ISVG+ +P++EFLEEW +E+LEE A A TK+FVNG
Sbjct: 298 XXPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGV 356
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ TLRKLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN
Sbjct: 357 WMGVHRDPVSLVRTLRKLRRK-DDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQ 415
Query: 587 LLLKKRHIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LLL+KRHI+NL K+ Y W L++ GV+E +D EEET MI M
Sbjct: 416 LLLQKRHIENLVRGKDDPDFAYNWDNLIKEGVIELLDAEEEETVMICM 463
>gi|51472091|gb|AAU04466.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 595
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/503 (50%), Positives = 332/503 (66%), Gaps = 49/503 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M + + K +
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPA--KGRL 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLKERDY-------NNYGWQ 608
+I +DAGR+ RPL + E G L+L K HI+ L ERD + +GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDFGETGVEKGQLILSKEHIEKL-ERDKELGKYHPDYWGWN 476
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 477 GLRASGAIEYLDAEEEESAMICM 499
>gi|89090016|gb|AAO64654.3| RNA polymerase II subunit RPB2, partial [Dacrymyces chrysospermus]
Length = 870
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/472 (53%), Positives = 328/472 (69%), Gaps = 39/472 (8%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S ++ EIRS +E + S L + M R +L+KS G + A LPYI+ +IPI++V
Sbjct: 7 SPISHLAEIRSQVEKGGKQISLLQIKMTHR---NLEKST-GSLMRAQLPYIRNDIPIVVV 62
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG V DRD+LEHI YD DD M+EM+KP ++EAFVIQ++ VAL++IG RG G+++
Sbjct: 63 FRALGIVPDRDVLEHICYDPDDHAMLEMLKPCIEEAFVIQDREVALDYIGRRGTTTGLSR 122
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
E+R++YA+EILQKEMLPH+ + E+KKAYF GYMVHRL+LA+L RRELDDRDH+
Sbjct: 123 EKRLRYAQEILQKEMLPHISTQEGAESKKAYFFGYMVHRLVLAALDRRELDDRDHFGKKR 182
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ ++FN+ A+K IT+GL+YSLATGN
Sbjct: 183 LDLAGPLLATLFRMLFRRLTKDVYRYMQKCVETHREFNINAAVKPATITNGLKYSLATGN 242
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK QA+AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+A+PRQLHN WGM+
Sbjct: 243 WGDQKKFMQAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIARPRQLHNHHWGMVXXX 302
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
G A GLVKNLALMA ISVG+ P++EFLEEW +E L E + ATK+FVNG
Sbjct: 303 XXXXGQACGLVKNLALMACISVGTLSQPVVEFLEEWGLEPLGERTDEPLT-ATKVFVNGV 361
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA--EN 584
W+GIHRDP+ L+ T+R LRR D I SE+S++RDIR+RE+R++TDAGR+CRPL I +
Sbjct: 362 WMGIHRDPQHLVNTVRTLRRS-DGISSEISVVRDIRERELRLYTDAGRVCRPLFIVNEQT 420
Query: 585 GSLLLKKRHIDNLKERDYNN-----YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+L++ KR I+ L R+ YGW LV SG+VE +D EEET MIAM
Sbjct: 421 QNLVISKREINWLHAREKPGEKDKVYGWSQLVTSGMVELLDAEEEETVMIAM 472
>gi|51472081|gb|AAU04461.1| RNA polymerase II subunit [Lasiosphaeria glabrata]
Length = 599
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/504 (50%), Positives = 333/504 (66%), Gaps = 47/504 (9%)
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S +Y+ EIRS LE SR S+L + + +G +K
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGSSISYQAEIRSALEKGSRLISSLQMKLHTKG--EPQKG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K ++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RLPNTVSVTLPYVKDDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ ID K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMGYMKRCIDTNKHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRD
Sbjct: 359 MEILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNL-KERDYNNY-----GW 607
RE +I +DAGR+ RPL + E G L+L K HI L ++R+ Y GW
Sbjct: 418 REFKIFSDAGRVMRPLFVVETEDIGETGVEKGQLILSKEHIARLERDRELGKYHPDYWGW 477
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 NGLRMSGAIEYLDAEEEESAMICM 501
>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
Length = 937
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/508 (50%), Positives = 338/508 (66%), Gaps = 50/508 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K + EIRS +E +R S+ N+ + K
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTRLISSF--NIKWTDNSMIVK 58
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
G A+LPYIK ++P+ IVFRALG V+D DIL HI+YD +D +M+E++KPS++E
Sbjct: 59 RQPGPFAYAVLPYIKADVPMAIVFRALGIVSDEDILNHIVYDRNDTQMLELLKPSIEEGA 118
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
+IQE+ AL++I RG + G TK++R+K+AREI+Q+E LPH+ + +T+KA+F GYM+
Sbjct: 119 MIQERETALDWIARRGNQTG-TKDKRLKFAREIMQREFLPHISQKEGQDTRKAFFFGYMI 177
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
HRLL LGRR+ DDRDH+ + Y +K +D ++F
Sbjct: 178 HRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDMFNYLRKCVDAEQEF 237
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N LA+K I+T+GL+YSLATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+P+
Sbjct: 238 NATLALKASIVTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPV 297
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG++ +PI++F+ + +
Sbjct: 298 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGNESAPIIDFMSQRN 357
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
M+ LEE P ATK+FVNG WVG+H +P QL+ +++LRR + E+S+IRDIRD
Sbjct: 358 MDLLEEYDPIQNPTATKVFVNGTWVGVHSNPSQLVSVVQELRRN-GTLSYEMSLIRDIRD 416
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL---KERDYNN--------- 604
RE +I TDAGR+ RPL + E GSL+L K HI+ L KE D +
Sbjct: 417 REFKIFTDAGRVMRPLFVVETNYNKPNRGSLVLTKAHIEKLQADKEIDTSGMNDEDTAER 476
Query: 605 -YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW L+ GVVEY+D EEE MI M
Sbjct: 477 KYGWFGLIHDGVVEYLDAEEEEGAMIIM 504
>gi|59894415|gb|AAX11044.1| RNA polymerase II subunit [Schizothecium fimbriatum]
Length = 598
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/506 (50%), Positives = 335/506 (66%), Gaps = 51/506 (10%)
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + S +
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDTS--RG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ ++IVFRALG V+D DIL HI YD D +M+E ++P ++EAFV
Sbjct: 59 RLPNTVSVTLPYVKEEVSLVIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFV 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR++DDRDH+ + Y ++ ID K F
Sbjct: 179 HKLLQCVLGRRDVDDRDHFGKKRLDLAGPLLAKLFRGIVRRITQDLMSYMKRCIDGNKQF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKPSTLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM YISVG+ PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYISVGTNAEPIVEFMIARN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATKIFVNG WVG+H D + L+ ++ LRR +I+ EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRSPNATKIFVNGTWVGVHHDAKHLVHLVQGLRRS-NIVSFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLK--------ERDYNNY 605
RE +I +DAGR+ RPL + E G L+L K H+ L +DY +
Sbjct: 418 REFKIMSDAGRVMRPLFVVETEDESSTGVEKGELVLTKTHVQKLANDKLIGKYHKDY--F 475
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
GWQ L+QSG VEY+D EEET+MI+M
Sbjct: 476 GWQGLLQSGAVEYLDAEEEETSMISM 501
>gi|6606095|gb|AAF19060.1|AF107788_1 DNA-dependent RNA polymerase II RPB140 [Pichia kudriavzevii]
Length = 905
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 253/510 (49%), Positives = 331/510 (64%), Gaps = 55/510 (10%)
Query: 176 AQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+ + N V VF S ++ EIRS LE SR S++ V + G S K +G+
Sbjct: 1 AQERSSANIVQVFKKSGVSPISHVAEIRSALEKGSRLISSIQVKLSTGGASSFKAGGVGR 60
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
I LPYIK ++PI+IVFRALG + D DIL+HI YD DD +M+EM+KP ++E F+IQ Q
Sbjct: 61 SIKTTLPYIKTDVPIVIVFRALGVIEDGDILQHICYDDDDWQMLEMLKPCIEEGFLIQSQ 120
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
VAL++IG RG G+ +ERRI++A++ILQ+E LPH+ ET KAYF GY+++RLLL
Sbjct: 121 EVALDYIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDGGHETNKAYFFGYIINRLLL 180
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
+L R+E DDRDH+ + Y Q+ I+ G+DFN+ A
Sbjct: 181 CALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIEHGEDFNIVSA 240
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
+K+ IT GL+YSLATGNWG+QKKA ++AGVSQVLNR T++S+LSHLRR N+PIGRDGK
Sbjct: 241 VKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 300
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
LAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS PI LEEW +E +
Sbjct: 301 LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSASEPITYLLEEWGLEPIS 360
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
+ P +T++F+NG WVG HRDP L+ T+R+LRR I SEVS+IRDIR+RE +I
Sbjct: 361 DYDPQEHKLSTRVFLNGNWVGTHRDPGMLVDTMRQLRRS-GTISSEVSLIRDIREREFKI 419
Query: 569 HTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKER-----------DYNN------ 604
TDAGR+ RPL I ++ G L L K H + +R D N
Sbjct: 420 FTDAGRVYRPLFIVDDDPDSENKGGLKLTKEHCRKILDREVEEIPQDDEFDENGEPLEPL 479
Query: 605 ---YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW+ L+ G+VEY+D EEET +IAM
Sbjct: 480 QRIYGWESLLSEGIVEYLDAEEEETVLIAM 509
>gi|6606127|gb|AAF19076.1|AF107804_1 DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
Length = 942
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/510 (49%), Positives = 333/510 (65%), Gaps = 50/510 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K + EIRS +E +R S+ + K
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGHGK 60
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
G A LPYIK ++P+ IVFRALG V+D +IL HI+YD D +M+E++KPS++E
Sbjct: 61 RIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGS 120
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
V+Q++ AL+FI RGA G TK+RR+K+AR+I+Q+E LPH+ + +T+KAYF GYM+
Sbjct: 121 VVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMI 179
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLL LGRR+ DDRDH+ V Y Q+ ++ +DF
Sbjct: 180 HRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDF 239
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+P+
Sbjct: 240 NVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPV 299
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM Y+SVGS SPI++F+ + +
Sbjct: 300 GRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRN 359
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
M+ LEE + DATK+FVNG WVG+H + +QL+ +++LRR + E+S+IRDIRD
Sbjct: 360 MQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRN-GTLSYEMSLIRDIRD 418
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK---------------ERD 601
RE +I TDAGR+ RPL + EN L+ K + LK E +
Sbjct: 419 REFKIFTDAGRVMRPLFVVENDFRRENRNQLVFTKAISNKLKAEQQETSTRQGWSQEEVE 478
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW+ L+Q GVVEY+D EEET MI
Sbjct: 479 NATYGWRGLIQDGVVEYLDAEEEETAMITF 508
>gi|6606125|gb|AAF19075.1|AF107803_1 DNA-dependent RNA polymerase II RPB140 [Curvularia brachyspora]
Length = 942
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/510 (49%), Positives = 333/510 (65%), Gaps = 50/510 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K + EIRS +E +R S+ + K
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGK 60
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
G A LPYIK ++P+ IVFRALG V+D +IL HI+YD D +M+E++KPS++E
Sbjct: 61 RIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGS 120
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
V+Q++ AL+FI RGA G TK+RR+K+AR+I+Q+E LPH+ + +T+KAYF GYM+
Sbjct: 121 VVQDRETALDFIAKRGANSG-TKDRRLKFARDIMQREFLPHISQKEGQDTRKAYFFGYMI 179
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLL LGRR+ DDRDH+ V Y Q+ ++ +DF
Sbjct: 180 HRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDF 239
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N+++A+K IIT+GL+YSLATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+P+
Sbjct: 240 NVQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPV 299
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHN+ WG++CPAETPEG A GLVKNL+LM Y+SVGS SPI++F+ + +
Sbjct: 300 GRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRN 359
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
M+ LEE + DATK+FVNG WVG+H + +QL+ +++LRR + E+S+IRDIRD
Sbjct: 360 MQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRN-GTLSYEMSLIRDIRD 418
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK---------------ERD 601
RE +I TDAGR+ RPL + EN L+ K + LK E +
Sbjct: 419 REFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEISNKLKAEQSETSTRQGWSQEEVE 478
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW+ L+Q GVVEY+D EEET MI
Sbjct: 479 QATYGWRGLIQDGVVEYLDAEEEETAMITF 508
>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Melanomma radicans]
Length = 936
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/508 (49%), Positives = 337/508 (66%), Gaps = 50/508 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
SEKVLIAQE+ A N V VF K + EIRS +E +R S+ N+ + K
Sbjct: 1 SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTRLISSF--NIKWTDNSLILK 58
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
G A+LPYIK ++P+ IVFRALG V+D DIL HI+YD +D +M+E++KPS++E
Sbjct: 59 RTPGPFAYALLPYIKADVPMAIVFRALGIVSDEDILNHIVYDREDTQMLELLKPSIEEGS 118
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
+IQ++ AL++I RG G TKERR+K+A+EI+Q+E LPH+ + +T+KA+F GYM+
Sbjct: 119 MIQDRENALDWIARRGNTTG-TKERRLKFAKEIMQREFLPHISQREGADTRKAFFFGYMI 177
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
HRLL LGRRE DDRDH+ V Y QK ++ ++F
Sbjct: 178 HRLLQCVLGRREEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVFKYLQKCVENNQEF 237
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N+++A+K ++T+GL+YSLATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+P+
Sbjct: 238 NVQMAVKGSVLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPV 297
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG++ +PI +++ +
Sbjct: 298 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTESTPITDYMSQRQ 357
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P A K+FVNG WVG H +P QL+ +++LRR + E+S+IRDIRD
Sbjct: 358 MELLEEYDPVVNPSAIKVFVNGVWVGTHNNPTQLVNNVQELRRN-GTLSYEMSLIRDIRD 416
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL---KERDYNN--------- 604
RE +I TDAGR+ RPL + EN G L+L K H+ L +E D +
Sbjct: 417 REFKIFTDAGRVMRPLFVVENRLNQANVGQLVLNKGHVQKLLDDREIDTSGMSDEDAASV 476
Query: 605 -YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW+ L+ SGV+EY+D EEET MI M
Sbjct: 477 KFGWRGLLHSGVIEYLDAEEEETAMIVM 504
>gi|51472089|gb|AAU04465.1| RNA polymerase II subunit [Lasiosphaeria lanuginosa]
Length = 594
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/502 (50%), Positives = 331/502 (65%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M + + K I
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPA--KGRI 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 AGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLK-ERDYNNY-----GWQV 609
+I +DAGR+ RPL + E G L+L K HI L+ +++ Y GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDVGETGVEKGQLILSKAHIGKLEADKELGKYHPDYWGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 LRASGAIEYLDAEEEESAMICM 499
>gi|6606099|gb|AAF19062.1|AF107790_1 DNA-dependent RNA polymerase II RPB140 [Podospora anserina]
Length = 934
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/506 (49%), Positives = 336/506 (66%), Gaps = 47/506 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + S +
Sbjct: 1 SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKA--SNE 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K + + LPY+++++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EA
Sbjct: 59 KGRLANTVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEA 118
Query: 289 FVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
F IQ++ +AL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGY
Sbjct: 119 FCIQDREIALDFIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGY 178
Query: 348 MVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGK 381
MV++LL +LGRR+ DDRDH+ + Y ++ +D K
Sbjct: 179 MVNKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDTNK 238
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+
Sbjct: 239 HFTLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNT 298
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ PI++F+
Sbjct: 299 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVDFMTA 358
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
M+ LEE P +ATK+FVNG WVG+H DP+QL+ ++ LRR+ ++I EVS++RDI
Sbjct: 359 RGMDVLEEYEPLRAPNATKVFVNGTWVGVHNDPKQLVTLVQDLRRK-NVISFEVSLVRDI 417
Query: 562 RDREIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNL-KERDYNNY----- 605
R+RE +I +DAGR+ RPL E G L+L K HI L ++++ Y
Sbjct: 418 REREFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNKDHIARLQRDKELGKYHPDYW 477
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
GWQ L++SG +EY+D EEETTMI M
Sbjct: 478 GWQGLLKSGAIEYLDAEEEETTMICM 503
>gi|51472119|gb|AAU04480.1| RNA polymerase II subunit [Lasiosphaeria sorbina]
Length = 592
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 332/502 (66%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M + + K +
Sbjct: 1 LIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKAEPA--KGRL 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 SGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLK-ERDYNNY-----GWQV 609
+I +DAGR+ RPL + E G L+L K HI+ L+ +++ Y GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDVGETGVEKGQLILSKGHIEKLEGDKELGKYHPDYWGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 LRASGAIEYLDAEEEESAMICM 499
>gi|59894417|gb|AAX11045.1| RNA polymerase II subunit [Podospora fimiseda]
Length = 595
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 333/502 (66%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + S +K +
Sbjct: 1 LIAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMKLHTKA--SSEKGRL 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+++++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 ANTVSVTLPYVREDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ +AL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CETKKA+FLGYMV+R
Sbjct: 119 DREIALDFIGKRGNGNMGQNRVNRIRAAKDLLQKEMLPHISQTEGCETKKAFFLGYMVNR 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LLL +LGRR+ DDRDH+ + Y ++ +D K F L
Sbjct: 179 LLLCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMSYMKRCVDTNKLFTL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ P++EF+ +ME
Sbjct: 299 DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTSADPVVEFMVARNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATKIFVNG WVG+H D +QL+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 VLEEYEPLRSPNATKIFVNGTWVGVHHDSKQLVNLVQDLRRK-NVINFEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAE----------NGSLLLKKRHIDNLKE-RDYNNY-----GWQV 609
+I +DAGR+ RPL E G L+L K HI L++ +D Y GWQ
Sbjct: 418 FKIFSDAGRVMRPLFTVEQEVDGPHGVQQGQLILNKDHISRLQQDKDLGKYHEDYWGWQG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L++SG +EY+D EEET MIAM
Sbjct: 478 LLRSGAIEYLDAEEEETAMIAM 499
>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
trigonosporus]
Length = 937
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 342/506 (67%), Gaps = 47/506 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKV+IAQE+ A N V VF + S Y+Y EIRS LE SR S L + + ++GG+
Sbjct: 1 SEKVIIAQERSAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISQLALRLYSKGGRG-- 58
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
S+ G + A LPY+++E PI ++FRA G V+D DIL HI YD +D +M+EM+KP ++E+
Sbjct: 59 ASSSGAIVHATLPYVREETPIALIFRAYGVVSDEDILNHICYDRNDSQMLEMLKPCIEES 118
Query: 289 FVIQEQNVALNFIGARGARPG--VTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
FV+Q++ VAL+ IG RG + G +T+++RI+ A+EILQKE LPH+ ++ ET+KA+FLG
Sbjct: 119 FVVQDREVALDHIGKRGQQGGFALTRDKRIRTAKEILQKETLPHISQAEGSETRKAFFLG 178
Query: 347 YMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRG 380
YMVH+LL +LGRR++DDRDH+ + Y + I
Sbjct: 179 YMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLSKLFRNIMRRMNTELTSYMKMCIQNN 238
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
++F + I+ +T+G++YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N
Sbjct: 239 RNFQISQGIRITTLTNGMKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTN 298
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ PI EF+
Sbjct: 299 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPTDPIEEFMI 358
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
+ ME +EE P +ATK+FVNG WVG+H++P++LM + K RR ++ +EVS++RD
Sbjct: 359 DREMEIVEEYEPLRFPNATKVFVNGAWVGVHQEPQRLMEEMIKARR-VNSFPAEVSLVRD 417
Query: 561 IRDREIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNL-KERDY----NNY 605
IRDRE ++ +DAGR+ RP+ + + G+L+L K + L +ERD
Sbjct: 418 IRDREFKVFSDAGRVMRPVFVVNRENNEYEGVQKGTLVLSKEQVAQLTEERDLPTEQRKL 477
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W+ LV+SG VEY+D EEET MI M
Sbjct: 478 KWEDLVRSGAVEYLDAEEEETAMICM 503
>gi|59894373|gb|AAX11023.1| RNA polymerase II subunit [Cercophora scortea]
Length = 597
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/504 (49%), Positives = 334/504 (66%), Gaps = 47/504 (9%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + S K
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDNS--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDSQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ +AL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ ID + F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNRHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKASTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPADPIVEFMIARN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ +II EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSLVQGLRRK-NIISFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAE----------NGSLLLKKRHIDNLK-ERDYNNY-----GW 607
RE +I +DAGR+ RPL + E G L+L K HI L+ +++ Y GW
Sbjct: 418 REFKIFSDAGRVMRPLFVVEQEENSDSGVAKGQLVLTKDHIRQLETDKELGKYHEQYWGW 477
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
+ L +SG +EY+D EEETTMI M
Sbjct: 478 KGLRESGAIEYLDAEEEETTMICM 501
>gi|51472083|gb|AAU04462.1| RNA polymerase II subunit [Lasiosphaeria glabrata]
Length = 595
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/502 (50%), Positives = 331/502 (65%), Gaps = 47/502 (9%)
Query: 174 LIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
LIAQE+ A N V VF S +Y+ EIRS LE SR S+L + + +G +K +
Sbjct: 1 LIAQERSAANIVQVFKKPPGSSISYQAEIRSALEKGSRLISSLQMKLHTKG--EPQKGRL 58
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ LPY+K ++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ
Sbjct: 59 PNTVSVTLPYVKDDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQ 118
Query: 293 EQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+
Sbjct: 119 DREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHK 178
Query: 352 LLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNL 385
LL LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMGYMKRCIDTNKHFSL 238
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
L IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGR
Sbjct: 239 ALGIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGR 298
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME
Sbjct: 299 DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAADPIIEFMTSRNME 358
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE
Sbjct: 359 ILEEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDRE 417
Query: 566 IRIHTDAGRICRPLLIAEN----------GSLLLKKRHIDNL-KERDYNNY-----GWQV 609
+I +DAGR+ RPL + E G L+L K HI L ++R+ Y GW
Sbjct: 418 FKIFSDAGRVMRPLFVVETEDIGETGVEKGQLILSKEHIARLERDRELGKYHPDYWGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L SG +EY+D EEE+ MI M
Sbjct: 478 LRMSGAIEYLDAEEEESAMICM 499
>gi|59894397|gb|AAX11035.1| RNA polymerase II subunit [Lasiosphaeria hispida]
Length = 600
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/508 (50%), Positives = 335/508 (65%), Gaps = 51/508 (10%)
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S +Y+ EIRS LE+ SR S+L + + + S K
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGSSVSYQAEIRSALENGSRLISSLQMRLHTKHDAS--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ +AL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHY-------------------VRMYAQKF-------IDRGKDF 383
H+LL LGRR+ DDRDH+ VR Q+ ID K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLMAKLFRGLVRRITQELMQHMKRCIDGNKHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKPGTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVGS PI+EF+
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGSAQEPIIEFMIARG 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+ P++L+ ++ LRR+ + +EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRYPNATKVFVNGTWVGVHQQPKELVTDIQGLRRKGS-LTAEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLKE-RDY---------N 603
RE +I TDAGR+ RPL + E G L+++KRHI+ L+E + Y
Sbjct: 418 REFKIFTDAGRVMRPLFVVEQSENGEWGVEKGQLIIQKRHIERLQEDKAYAGIPTVEGEE 477
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GW+ L+ G +EY+D EEET MI M
Sbjct: 478 KRGWEFLLADGCIEYLDAEEEETAMICM 505
>gi|59894409|gb|AAX11041.1| RNA polymerase II subunit [Podospora appendiculata]
Length = 582
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/504 (49%), Positives = 334/504 (66%), Gaps = 47/504 (9%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + + + S K
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDNS--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDSQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ +AL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREIALDYIGKRGNGNTGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ ID + F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNRHF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKASTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ PI+EF+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPADPIVEFMIARN 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ +II EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSLVQGLRRK-NIISFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLIAE----------NGSLLLKKRHIDNLK-ERDYNNY-----GW 607
RE +I +DAGR+ RPL + E G L+L K HI L+ +++ Y GW
Sbjct: 418 REFKIFSDAGRVMRPLFVVEQEENSDSGVAKGQLVLTKDHIRQLETDKELGKYHEQYWGW 477
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
+ L +SG +EY+D EEETTMI M
Sbjct: 478 KGLRESGAIEYLDAEEEETTMICM 501
>gi|51472113|gb|AAU04477.1| RNA polymerase II subunit [Lasiosphaeria rugulosa]
Length = 593
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/501 (50%), Positives = 329/501 (65%), Gaps = 49/501 (9%)
Query: 176 AQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+ A N V VF S +Y+ EIRS LE SR S+L + M + K +
Sbjct: 1 AQERSAANIVQVFKKPPGSSISYQAEIRSALEKGSRLISSLQMRMHTK--SEPPKGRLAG 58
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
+ LPY+K+++ I IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ++
Sbjct: 59 TVSVTLPYVKEDVSIAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCVEEAFCIQDR 118
Query: 295 NVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
VAL+FIG RG G + RI+ AR++LQKEMLPH+ ++ CET+KA+FLGYMVH+LL
Sbjct: 119 EVALDFIGKRGNGGMGQNRNNRIRAARDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLL 178
Query: 354 LASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLEL 387
LGRR+ DDRDH+ + Y ++ ID K F+L L
Sbjct: 179 QCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRSVVRRMTQDLMSYMKRCIDTNKHFSLAL 238
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
IK+ +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDG
Sbjct: 239 GIKSSSLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDG 298
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
KLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS PI+EF+ +ME L
Sbjct: 299 KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSAAEPIIEFMTSRNMEIL 358
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ ++I EVS++RDIRDRE +
Sbjct: 359 EEYEPLRYPNATKVFVNGSWVGVHQDPKHLVNMVQSLRRK-NVISYEVSLVRDIRDREFK 417
Query: 568 IHTDAGRICRPLLIAEN----------GSLLLKKRHIDNLKERDY-------NNYGWQVL 610
I +DAGR+ RPL + E G L+L K HI+ L ERD + +GW L
Sbjct: 418 IFSDAGRVMRPLFVVETEDIGETGVEKGQLILSKDHIERL-ERDKELGKYHPDYWGWNGL 476
Query: 611 VQSGVVEYIDTLEEETTMIAM 631
SG +EY+D EEE+ MI M
Sbjct: 477 RASGAIEYLDAEEEESAMICM 497
>gi|59894391|gb|AAX11032.1| RNA polymerase II subunit [Gelasinospora tetrasperma]
Length = 590
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/499 (49%), Positives = 330/499 (66%), Gaps = 51/499 (10%)
Query: 179 KMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+ A N V VF +Y+ EIRS LE SR S+L + + + Q+ K + +
Sbjct: 1 RSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQN--KGRLANTVS 58
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ++ VA
Sbjct: 59 VTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEAFCIQDREVA 118
Query: 298 LNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
L++IG RG GV + RIK A+E+LQKE+LPH+ ++ CET+KA+FLGYMVH+LL
Sbjct: 119 LDYIGKRGNGHTGVNRNSRIKAAKEMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCV 178
Query: 357 LGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIK 390
LGRR+ DDRDH+ + Y ++ +D K F+L L IK
Sbjct: 179 LGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIK 238
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
+T+GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLA
Sbjct: 239 ASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLA 298
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
KPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ PI+EF+ +ME LEE
Sbjct: 299 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLEEY 358
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
P +ATK+FVNG WVG+H+DP+ L+ ++ LRR+ +II EVS++RDIRDRE +I +
Sbjct: 359 EPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRK-NIISFEVSLVRDIRDREFKIFS 417
Query: 571 DAGRICRPLLI----------AENGSLLLKKRHIDNLKE--------RDYNNYGWQVLVQ 612
DAGR+ RPL + E G L+L K HI L++ DY +GWQ L++
Sbjct: 418 DAGRVMRPLFVVEQEDNSDSGVEKGQLILTKEHIRRLEQDKELGKYHEDY--FGWQGLLE 475
Query: 613 SGVVEYIDTLEEETTMIAM 631
SG +EY+D EEET MI M
Sbjct: 476 SGSIEYLDAEEEETAMICM 494
>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
Length = 1206
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 268/698 (38%), Positives = 415/698 (59%), Gaps = 77/698 (11%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ +F +KGLV QQ++SF+ FIQ ++Q I++D P I + + + ++ + R ++
Sbjct: 12 WHILKLFFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDNDPGNDDLLSKIRMVI 71
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE--EPVTTQH 124
+ Q++LSKPT+ E DG ++PNEARLRNLTYS+PLY +I+ ++++ + + + Q
Sbjct: 72 RLGQLHLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTSIIKNEKSIDYILKQF 131
Query: 125 -QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
+K IG+IPIM++S +C+L+ L + L L ECP DPGGYFI+NGSEKV++AQE+++ N
Sbjct: 132 SEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVNGSEKVIVAQEQLSWN 191
Query: 184 TVYVFSMKDS-------------KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
VY+F ++ Y Y E RS ++S S L V + + K S
Sbjct: 192 KVYIFQKNENLRNTIKIKNYTVEGYLYFAECRSVADYSKWSPSLLTVKVCLCPYKDQKFS 251
Query: 231 AI---------------GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDP 275
G + +LPY K++IPI +F+ALGF + +IL++I YD D
Sbjct: 252 IFKKNLKFNSPEIFLSGGFYLRMMLPYFKKDIPITWIFKALGFENEIEILDYICYDSQDE 311
Query: 276 EMMEMVK-----------PSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQ 324
+++ +V+ SL + I +Q AL IG ++ + RIK+A E+LQ
Sbjct: 312 DLISIVRYIVEDDKISTQNSLSISCPILDQETALAAIGQHVSKG--PQGIRIKFAYEVLQ 369
Query: 325 KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------- 368
KE LPH+G+ E +K YF GY++++L+ +G+R++DDRDHY
Sbjct: 370 KEFLPHIGIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYGYKRLDTVGPLLSQLF 429
Query: 369 ----------VRMYAQKFIDR-GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 417
+ QK I R K F L+ K+ +T G++Y+L+TGNWG K++ R
Sbjct: 430 RQLLGKVLKEFKTNVQKKIHRLDKKFELKDFFKSNYVTTGIQYALSTGNWGTDKQS--LR 487
Query: 418 AGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 477
G+SQVLNRL+++S+LSHLRRVNSP + K+ KPR LHN+ WG ICP ETPEG + GLV
Sbjct: 488 TGISQVLNRLSYSSTLSHLRRVNSPSAKGNKITKPRHLHNSHWGYICPVETPEGHSCGLV 547
Query: 478 KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 537
KNLAL A I++G+ P I+E LE +E+LEE + + K+FVNGCW+G H++P L
Sbjct: 548 KNLALTAMITIGTSPLFIIEKLENLGLESLEEYNSDKLKSSFKVFVNGCWIGTHKNPFAL 607
Query: 538 MGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLL---IAENGSLLLKKRHI 594
+ ++ RR+ +I E+SII D D+EI+I +D+GR+ RPLL + K++++
Sbjct: 608 ISKMKIYRRR-NIFSEEISIILDDYDKEIKIFSDSGRVIRPLLIINEENIIKINNKQKYL 666
Query: 595 DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW 632
NL + +Q L++ G++EY+D EEET +I+M+
Sbjct: 667 HNLTDDQSIYSNFQQLLEEGILEYVDPEEEETCLISMF 704
>gi|59894343|gb|AAX11008.1| RNA polymerase II subunit [Bombardia bombarda]
Length = 593
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/501 (49%), Positives = 327/501 (65%), Gaps = 47/501 (9%)
Query: 175 IAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQE+ A N V VF +Y+ EIRS LE SR S+L + M + + K +
Sbjct: 1 IAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRMHTKADNA--KGRLA 58
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ+
Sbjct: 59 NTVNVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDSQMLEALRPCIEEAFCIQD 118
Query: 294 QNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
+ +AL++IG RG G + RI+ AR++LQKEMLPH+ S+ CETKKA+FLGYMVH+L
Sbjct: 119 REIALDYIGKRGNGNTGQNRMNRIRAARDLLQKEMLPHISQSEGCETKKAFFLGYMVHKL 178
Query: 353 LLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLE 386
L LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRLTQDLMSYMKRCIDTNKYFSLA 238
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRD
Sbjct: 239 LGIKASTLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRD 298
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ P++EF+ +ME
Sbjct: 299 GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPAEPVIEFMINRNMEV 358
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
LEE P +ATK+FVNG WVGIH +P+QL+ ++ LRR II EVS++RDIRDRE
Sbjct: 359 LEEYEPLRYPNATKVFVNGTWVGIHHEPKQLVSLVQGLRRS-GIISYEVSLVRDIRDREF 417
Query: 567 RIHTDAGRICRPLLI----------AENGSLLLKKRHIDNL-KERDYNNY-----GWQVL 610
+I +DAGR+ RPL + E G L+L K HI L ++++ Y GW+ L
Sbjct: 418 KIFSDAGRVMRPLFVVEQDENARSGVEKGQLILNKTHIRRLEQDKELGKYHPQYWGWKGL 477
Query: 611 VQSGVVEYIDTLEEETTMIAM 631
+G +EY+D EEET MI M
Sbjct: 478 RDTGAIEYLDAEEEETAMICM 498
>gi|59894355|gb|AAX11014.1| RNA polymerase II subunit [Cercophora sp. SMH3200]
Length = 590
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/499 (49%), Positives = 331/499 (66%), Gaps = 47/499 (9%)
Query: 177 QEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+ A N V VF +Y+ EIRS LE SR S+L + + + S +K +
Sbjct: 1 QERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMKLHTKA--SSEKGRLANT 58
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
+ LPY+++++ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ++
Sbjct: 59 VSVTLPYVREDVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFCIQDRE 118
Query: 296 VALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
+AL+FIG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV++LLL
Sbjct: 119 IALDFIGKRGNGNMGQNRVNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLL 178
Query: 355 ASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELA 388
SLGRR+ DDRDH+ + Y ++ ID K F+L L
Sbjct: 179 CSLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCIDTNKHFSLALG 238
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGK
Sbjct: 239 IKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGK 298
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ P++EF+ +ME LE
Sbjct: 299 IAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTSADPVIEFMIARNMEVLE 358
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRI 568
E P +ATKIFVNG WVG+H D +QL+ ++ LRR+ ++I EVS++RDIRDRE +I
Sbjct: 359 EYEPLRSPNATKIFVNGTWVGVHHDSKQLVSLVQDLRRK-NVINFEVSLVRDIRDREFKI 417
Query: 569 HTDAGRICRPLLIAE----------NGSLLLKKRHIDNLKE-RDYNNY-----GWQVLVQ 612
+DAGR+ RPL E G L++ K HI L++ +D Y GWQ L++
Sbjct: 418 FSDAGRVMRPLFTVEQEVEGSHGVQQGQLIINKDHIARLQQDKDLGKYHEDYWGWQGLLR 477
Query: 613 SGVVEYIDTLEEETTMIAM 631
SG +EY+D EEET MI+M
Sbjct: 478 SGAIEYLDAEEEETAMISM 496
>gi|45545339|gb|AAS67517.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Alyxoria varia]
Length = 894
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/514 (47%), Positives = 338/514 (65%), Gaps = 51/514 (9%)
Query: 179 KMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+ A N V VF K + EIRS +E +R S+ + A +K++ G + A
Sbjct: 1 RSAANIVQVFKKKQGPIPWTAEIRSAVEKGTRLISSFSIKW-AENSMIIKRTP-GPFVYA 58
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
+LPYIK ++P+ +VFRALG V+D DIL HI YD +D M+E++KPS++E +IQ++ AL
Sbjct: 59 MLPYIKADVPMAVVFRALGVVSDEDILNHICYDRNDTGMLELLKPSIEEGAMIQDRENAL 118
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++I RG G TK+RR+K+AR+I+Q+E LPH+ + +T+KA+F GYM+HRLL LG
Sbjct: 119 DWIARRGNTTG-TKDRRLKFARDIMQREFLPHISQKEGSDTRKAFFFGYMIHRLLQCVLG 177
Query: 359 RRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTK 392
RRE DDRDH+ V Y QK ++ +FN+++A+K
Sbjct: 178 RREEDDRDHFGKKRLDLAGPLIANLFRVLFLKLTKDVFKYLQKCVENSTEFNVQMAVKAS 237
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
+IT+GL+YSLATGNWGDQKKA A+AGVSQVLNR T+AS+LSHLRR N+P+GRDGKLAKP
Sbjct: 238 VITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKP 297
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS+ +PI +F+ + +ME LEE P
Sbjct: 298 RQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPITDFMGQRNMELLEEYDP 357
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
ATK+FVNG WVG+H +P QL+ +++LRR + E+++IRDIRDRE +I TDA
Sbjct: 358 VVNPTATKVFVNGVWVGVHSNPGQLVSVVQELRRN-GTLSYEMTLIRDIRDREFKIFTDA 416
Query: 573 GRICRPLLIAE-------NGSLLLKKRHIDN-LKERDYNNYGWQVLVQSGVVEYIDTLEE 624
GR+ RPL + E GSL+L K+H+ L ++D + G+ + EE
Sbjct: 417 GRVMRPLFVVEQDVRKPNKGSLVLTKQHVQQILADKDIDTKGY-------------SDEE 463
Query: 625 ETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
M W+ L+ +GVVEY+D EEET MI M+P
Sbjct: 464 AAEMKFGWKGLIHAGVVEYLDAEEEETAMIIMTP 497
>gi|59894369|gb|AAX11021.1| RNA polymerase II subunit [Cercophora newfieldiana]
Length = 600
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/502 (49%), Positives = 326/502 (64%), Gaps = 48/502 (9%)
Query: 175 IAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQE+ A N V VF +Y+ EIRS LE SR S+L + + + S K +
Sbjct: 1 IAQERSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRLHTKPDNS--KGRLA 58
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
+ LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ+
Sbjct: 59 NTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDTQMLEALRPCIEEAFCIQD 118
Query: 294 QNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL 352
+ +AL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+L
Sbjct: 119 REIALDYIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKL 178
Query: 353 LLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLE 386
L LGRR+ DDRDH+ + Y ++ ID K F+L
Sbjct: 179 LQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRITQDLMSYMKRCIDGNKQFSLA 238
Query: 387 LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD 446
L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRD
Sbjct: 239 LGIKNGTLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRD 298
Query: 447 GKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMEN 506
GKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM YISVG+ PI++F+ +ME
Sbjct: 299 GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYISVGTNAEPIVDFMVARNMEV 358
Query: 507 LEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
LEE P +ATK+FVNG WVG+H+DP+ L+ ++ LRR ++I EVS++RDIRDRE
Sbjct: 359 LEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVNLVQNLRRS-NVISFEVSLVRDIRDREF 417
Query: 567 RIHTDAGRICRPLLIAE-----------NGSLLLKKRHIDNLKER------DYNNYGWQV 609
+I +DAGR+ RPL + E G L+L + H++ L D +GW
Sbjct: 418 KIFSDAGRVMRPLFVVEQEEDNKTSKVQKGQLVLTRAHMNRLARDKEVGAMDDEFFGWNG 477
Query: 610 LVQSGVVEYIDTLEEETTMIAM 631
L++ G VEY+D EEET MI M
Sbjct: 478 LLREGCVEYLDAEEEETAMICM 499
>gi|59894357|gb|AAX11015.1| RNA polymerase II subunit [Cercophora atropurpurea]
Length = 595
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/506 (49%), Positives = 328/506 (64%), Gaps = 51/506 (10%)
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF +Y+ EIRS LE SR S+L + M + + K
Sbjct: 1 KVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRMHTKADNA--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAFV
Sbjct: 59 RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFV 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG G + RI+ A+++LQKEMLPH+ S+ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNMGQNRVNRIRAAKDLLQKEMLPHISQSEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ ID K F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIIRRVTQDLMSYMKRCIDGNKQF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+L L IK +T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 SLALGIKAGTLTNALKYSLATGNWGDQKKAMNSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVG+ PI++F+ +
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTNAEPIVDFMVQRG 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LEE P ++TK+FVNG WVG+H DP+ L+ ++ LRR ++I EVS++RDIRD
Sbjct: 359 MEVLEEYEPLRYPNSTKVFVNGTWVGVHPDPKHLVTAVQGLRRS-NLISFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLKER--------DYNNY 605
RE +I +DAGR+ RPL + E G L+L K + L+ DY
Sbjct: 418 REFQIFSDAGRVMRPLFVVEQEDSGEHGVEKGQLVLTKSMVRELERSKGLGKFHPDYK-- 475
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
GW+ L+ G +EY+D EEET MI M
Sbjct: 476 GWEWLLGQGAIEYLDAEEEETAMICM 501
>gi|59894435|gb|AAX11054.1| RNA polymerase II subunit [Valsonectria pulchella]
Length = 592
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/501 (49%), Positives = 327/501 (65%), Gaps = 45/501 (8%)
Query: 172 KVLIAQEKMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S +Y+ EIRS LE SR S+L + M +G + K
Sbjct: 1 KVLIAQERSAANIVQVFKKPAGSSVSYQAEIRSALEKGSRLISSLQMKMHTKGEPA--KG 58
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
I + LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF
Sbjct: 59 RIAGTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRKDTQMLEALRPCIEEAFC 118
Query: 291 IQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
IQ++ VAL++IG RG G + RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMV
Sbjct: 119 IQDREVALDYIGKRGNGNTGQNRNNRIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMV 178
Query: 350 HRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRGKDF 383
H+LL LGRR+ DDRDH+ + Y ++ I+ + F
Sbjct: 179 HKLLQCVLGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIVRRMTNELSGYIRRCIESDRMF 238
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N+ + +K +T GL+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PI
Sbjct: 239 NVTMGLKHTTLTSGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPI 298
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SVGS P++EF+
Sbjct: 299 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSPADPLIEFMIHRG 358
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME +EE P +ATKIFVNG WVG+H DP+ L + RR+ + + EVS++RDIRD
Sbjct: 359 MEVVEEYEPLRHPNATKIFVNGTWVGVHHDPKHLCSQVVDCRRK-NYLQFEVSLVRDIRD 417
Query: 564 REIRIHTDAGRICRPLLI----------AENGSLLLKKRHIDNLKERDYNN---YGWQVL 610
RE ++ +DAGR+ RP+ A+ G+L L K +++L D N GW L
Sbjct: 418 REFKVFSDAGRVMRPVFTVHQEPDEETGADKGTLALTKDLVNSLSA-DLNQEERIGWSDL 476
Query: 611 VQSGVVEYIDTLEEETTMIAM 631
V++G VEY+D EEET MI M
Sbjct: 477 VKAGAVEYLDAEEEETAMICM 497
>gi|156627835|gb|ABU88905.1| RNA polymerase II second largest subunit [Psilopezia deligata]
Length = 801
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 242/456 (53%), Positives = 312/456 (68%), Gaps = 56/456 (12%)
Query: 213 STLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF 272
S++ + + ++G + I + LPYIK +IPI+IVFRALG V+D DIL H+ YD
Sbjct: 17 SSMQIKLYSKG----QAKGYNSTIKSTLPYIKIDIPIVIVFRALGVVSDEDILNHVCYDR 72
Query: 273 DDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVG 332
+D EM+EM+KP ++EAFVIQ++ +AL++IG RG G KE+RI+YAR+ILQKE+LPH+
Sbjct: 73 NDTEMLEMMKPCIEEAFVIQDREIALDYIGKRGNSQGSNKEKRIRYARDILQKELLPHIS 132
Query: 333 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------------ 368
+ ET+KA+FLGYMVHRLL +L RRE+DDRDH+
Sbjct: 133 QQEGNETRKAFFLGYMVHRLLQCALERREVDDRDHFGKKRLDLAGPLLAQLFRTLWKQLT 192
Query: 369 --VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 426
V Y +K ++ GK+FNL LA+K+ IT GL+YSLATGNW QKKA ++AGVSQVLNR
Sbjct: 193 KEVYKYLEKCVEGGKEFNLNLAVKSNTITSGLKYSLATGNWASQKKAASSKAGVSQVLNR 252
Query: 427 LTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALM+YI
Sbjct: 253 YTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYI 312
Query: 487 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR 546
+ +ME LEE P +ATKIFVNG WVGIHRDP L+ T+++LRR
Sbjct: 313 T--------------RNMEPLEEYEPQRSPNATKIFVNGVWVGIHRDPLHLVRTVQRLRR 358
Query: 547 QMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE 599
+I EVS+IRDIRDRE +I TDAGR+CRPL + EN G L+L+K HI+ L++
Sbjct: 359 -TGVISHEVSVIRDIRDREFKIFTDAGRVCRPLFVIENDPTSERRGQLVLQKEHIERLED 417
Query: 600 R----DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ +GW+ L+ G VEY+D EEET MI M
Sbjct: 418 DHGLPEEERFGWKGLLSVGAVEYLDAEEEETVMIVM 453
>gi|59894341|gb|AAX11007.1| RNA polymerase II subunit [Bombardia bombarda]
Length = 590
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/497 (49%), Positives = 323/497 (64%), Gaps = 47/497 (9%)
Query: 179 KMATNTVYVFSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+ A N V VF +Y+ EIRS LE SR S+L + M + + K + +
Sbjct: 1 RSAANIVQVFKKPAGGSVSYQAEIRSALEKGSRLISSLQMRMHTKADNA--KGRLANTVN 58
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
LPY+K+E+ + IVFRALG V+D DIL HI YD D +M+E ++P ++EAF IQ++ +A
Sbjct: 59 VTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRTDSQMLEALRPCIEEAFCIQDREIA 118
Query: 298 LNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
L++IG RG G + RI+ AR++LQKEMLPH+ S+ CETKKA+FLGYMVH+LL
Sbjct: 119 LDYIGKRGNGNTGQNRMNRIRAARDLLQKEMLPHISQSEGCETKKAFFLGYMVHKLLQCV 178
Query: 357 LGRRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIK 390
LGRR+ DDRDH+ + Y ++ ID K F+L L IK
Sbjct: 179 LGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRLTQDLMSYMKRCIDTNKYFSLALGIK 238
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLA 450
+T+ L+YSLATGNWGDQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLA
Sbjct: 239 ASTLTNALKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLA 298
Query: 451 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI 510
KPRQLHNT WG++CPAETPEG A GLVKNL+LM ++SVG+ P++EF+ +ME LEE
Sbjct: 299 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPAEPVIEFMINRNMEVLEEY 358
Query: 511 APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHT 570
P +ATK+FVNG WVGIH +P+QL+ ++ LRR II EVS++RDIRDRE +I +
Sbjct: 359 EPLRYPNATKVFVNGTWVGIHHEPKQLVSLVQGLRRS-GIISYEVSLVRDIRDREFKIFS 417
Query: 571 DAGRICRPLLI----------AENGSLLLKKRHIDNL-KERDYNNY-----GWQVLVQSG 614
DAGR+ RPL + E G L+L K HI L ++++ Y GW+ L +G
Sbjct: 418 DAGRVMRPLFVVEQDENARSGVEKGQLILNKTHIRRLEQDKELGKYHPQYWGWKGLRDTG 477
Query: 615 VVEYIDTLEEETTMIAM 631
+EY+D EEET MI M
Sbjct: 478 AIEYLDAEEEETAMICM 494
>gi|51472077|gb|AAU04459.1| RNA polymerase II subunit [Cercophora areolata]
Length = 574
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/481 (49%), Positives = 320/481 (66%), Gaps = 50/481 (10%)
Query: 196 AYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRA 255
+Y+ EIRS LE SR S+L + + + +K + + LPY+K E+ + IVFRA
Sbjct: 3 SYQAEIRSALEKGSRLISSLQMKLHTKADN--QKGRLANTVSVTLPYVKDEVSLAIVFRA 60
Query: 256 LGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKER 314
LG V+D DIL HI YD D M+E ++P ++EAF IQ++ +AL++IG RG G +
Sbjct: 61 LGVVSDEDILNHICYDRTDTPMLEALRPCIEEAFCIQDREIALDYIGKRGNGNQGQNRMN 120
Query: 315 RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--- 371
RI+ A+++LQKEMLPH+ ++ CET+KA+FLGYMVH+LL +LGRRE DDRDH+ +
Sbjct: 121 RIRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLD 180
Query: 372 -----------------------YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWG 408
Y ++ I+ +FNLE A++ + +T+ L+YSLATGNWG
Sbjct: 181 LAGPLLAKLFRGVMRRMTQDLMSYMKRCIETNANFNLETAVRAQTLTNALKYSLATGNWG 240
Query: 409 DQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
DQKKA + AGVSQVLNR TFAS+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAET
Sbjct: 241 DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 300
Query: 469 PEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWV 528
PEG A GLVKNL+LM Y+SVG+ PI++F+ +ME LEE P +ATK+FVNG WV
Sbjct: 301 PEGQACGLVKNLSLMCYVSVGTTADPIVDFMIARNMEVLEEYEPLRHPNATKVFVNGSWV 360
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN---- 584
G+H D + L+G ++ LRR+ I E+S++RDIRDRE +I +DAGR+ RPL + E
Sbjct: 361 GVHHDAKHLVGLVQSLRRK-GTISFEISLVRDIRDREFKIFSDAGRVMRPLFVVETEDNS 419
Query: 585 ------GSLLLKKRHIDNLKER--------DYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
GSL+L K H+ L+E DY +GW+ L QSG +EY+D EEETTMI
Sbjct: 420 ESGVEKGSLVLTKTHVKRLEEDKELGKYHPDY--WGWEGLKQSGAIEYLDAEEEETTMIC 477
Query: 631 M 631
M
Sbjct: 478 M 478
>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
Length = 1209
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 275/705 (39%), Positives = 406/705 (57%), Gaps = 86/705 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET---PPR 63
W ++++YF+E +++QQL+SF++F+Q +Q IV+D P I + + + E +
Sbjct: 13 WPLVSSYFEENSIIKQQLESFNDFVQNKMQDIVDDLPPIVVSYKVDKLTDFKENFLQNMK 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV-------RQG 116
+L+ Q++LSKPT E+DG ++PNEARLR+L+YS+PLY DI+ T V ++
Sbjct: 73 KILRLGQLHLSKPTFIEEDGVIHTLLPNEARLRSLSYSSPLYCDISVTTVNVTNEHEKER 132
Query: 117 EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
E + QK +G+IPIM++S +C+L+ L L L EC LD GGYFIINGSEKV++A
Sbjct: 133 ELNFKQEKQKILLGRIPIMIKSRFCILDKLLPMTLQNLGECNLDLGGYFIINGSEKVIVA 192
Query: 177 QEKMATNTVYVFSMK------------DSKYAYKTEIRSCLEHSS-RPTSTL---WVNMM 220
QEKMA N VYVF K D K + E RS E P+ T+ +N
Sbjct: 193 QEKMAWNYVYVFEKKKENNSVDKSFFLDLKNLFFAECRSISEFGKWSPSLTIIKICLNKF 252
Query: 221 ARGGQSLKKSAIGQ-----RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDP 275
+ + K+++ I +LPY K ++P+ +F+ALGF + +I+ +I YD +
Sbjct: 253 RKKKIAKKENSFSHFTGKFYIRVVLPYFKSDVPVTWIFKALGFEDETEIIPYICYDNTNE 312
Query: 276 EMMEMVKPSL-DEAFVIQ---------EQNVALNFIGARGARPGVTKERRIKYAREILQK 325
++E+V+ L D+ FV +Q +L IG + + RI+YA EILQ+
Sbjct: 313 NLIELVRNILKDDHFVPDNLKNDCFRLDQETSLALIGQHIFK--ASHGTRIRYAYEILQR 370
Query: 326 EMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY----------------- 368
E LPHVG+ E +K +F GYMV++LLL LG +++DDRDHY
Sbjct: 371 EFLPHVGIGQGFELRKGFFFGYMVNKLLLVQLGNKKVDDRDHYGYKRLDTVSPLLSVLFR 430
Query: 369 ---------VRMYAQKFIDRGKD-FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARA 418
+RM +K + K+ F + K +IT G+ YSLATGNW +
Sbjct: 431 QLVNKATKDLRMSLEKKTNLEKNTFQISDIFKFNLITTGMFYSLATGNWSTN--GQTMKT 488
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNR+ + S+LSHLR++NS KL KPRQLHNT WG+ICP ETPEG + GLVK
Sbjct: 489 GVSQVLNRINYMSTLSHLRKINSTGINVSKLTKPRQLHNTYWGLICPVETPEGHSCGLVK 548
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLA+ AYI++GS P+ EFLEE ++N EI I KIF+N CW+G++ P+ +
Sbjct: 549 NLAISAYITLGSSSMPVFEFLEELKIKNFNEIKVQNIRFYYKIFLNDCWIGVYDKPDTIA 608
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLK 598
TLR RR + E+S+I +D+EI+I+TDAGR+CRPL+++E K ++I +K
Sbjct: 609 KTLRCFRRSGN-TNQELSVIIFHKDKEIKIYTDAGRVCRPLIVSELVKFNKKNQYI--VK 665
Query: 599 ERDYNNYGWQV-----------LVQSGVVEYIDTLEEETTMIAMW 632
N Y + V L+++G++E+ID EE+T +I M+
Sbjct: 666 SISVNQYNFDVLTIGNKCTFTELIRNGLIEFIDAEEEKTCVIGMY 710
>gi|45120570|gb|AAO64659.2| RNA polymerase II subunit RPB2, partial [Gautieria otthii]
Length = 856
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 244/471 (51%), Positives = 317/471 (67%), Gaps = 38/471 (8%)
Query: 193 SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIV 252
S + EIRS +E + ST V M R S +KS+ G I A +PYIK +IPI +V
Sbjct: 3 SPINFLAEIRSAVEKGGKTVSTFQVKMFHR---SQEKSS-GNVIKATIPYIKTDIPIWVV 58
Query: 253 FRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTK 312
FRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ+++VAL+FIG RG G+++
Sbjct: 59 FRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDRDVALDFIGNRGTTIGLSR 118
Query: 313 ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---- 368
+RR++YA+EILQKEMLPH+ +S+ E+KKAYF GYMVHRLLLA+L RRELDDRDH+
Sbjct: 119 DRRLRYAQEILQKEMLPHIAMSEGAESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKR 178
Query: 369 ----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGN 406
V Y QK ++ K+FNL LA+K IT+GL+YSLATGN
Sbjct: 179 LDLAGPLLASLFRMLFRKLTKDVYRYLQKCVETHKEFNLNLAVKPNTITNGLKYSLATGN 238
Query: 407 WGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPA 466
WGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P
Sbjct: 239 WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPXXXXXXXXXXXXXXXXXXXXXXXX 298
Query: 467 ETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGC 526
EG A GLVKNLALMA ISVGS P++EFLEEW +E+LEE A SA TK+FVNG
Sbjct: 299 XXXEGQACGLVKNLALMACISVGSPSPPVIEFLEEWGLESLEENAHSATP-CTKVFVNGV 357
Query: 527 WVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS 586
W+G+HRDP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN
Sbjct: 358 WLGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQ 416
Query: 587 LLLKKRHIDNLKE--RD----YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L L+K+HI L++ RD + Y W +V+ G++E +D EEET MI+M
Sbjct: 417 LALQKKHIKWLQQGYRDDDPAHGQYKWDDMVKGGIIELLDAEEEETVMISM 467
>gi|343771977|emb|CCA65651.1| RNA polymerase II, partial [Taenia parva]
Length = 451
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/288 (77%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +RMYAQKFID+GKDFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRMYAQKFIDKGKDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS+IRD RD+EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLKRT 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HID LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|343771979|emb|CCA65652.1| RNA polymerase II, partial [Taenia taeniaeformis]
Length = 451
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 223/288 (77%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GKDFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS+IRD RD+EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLKRT 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HID LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|340343136|emb|CCA95005.1| RNA polymerase II, partial [Taenia mustelae]
Length = 451
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/288 (77%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GKDFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLKRT 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HID LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|88976128|gb|ABD59035.1| RNA polymerase II second largest subunit [Cylindrobasidium
evolvens]
Length = 763
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/462 (52%), Positives = 322/462 (69%), Gaps = 35/462 (7%)
Query: 199 TEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 258
EIRS +E + S V M R ++ ++G I A +PYIK +IPI +VFRALG
Sbjct: 2 AEIRSLVEKGGKTVSQFQVKMYHRH----QERSLGNIIKATVPYIKVDIPIWVVFRALGV 57
Query: 259 VADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKY 318
++DRDILEHI YD D +M+EM+KP +D+ FVIQ++ VAL+FIG RG + G+++E+RI+Y
Sbjct: 58 ISDRDILEHICYDLQDTQMLEMLKPCIDDGFVIQDREVALDFIGNRGTQTGLSREKRIRY 117
Query: 319 AREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------- 368
A+EILQKEMLPH+ +S+ E+KKAYF GYM+HRLL+A+L RRELDDRDH+
Sbjct: 118 AQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLMAALERRELDDRDHFGKKRLDLAGP 177
Query: 369 ----------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
V + QK ++ K+F IK IT+GL+YSLATGNWGDQKK
Sbjct: 178 LLANLFRMLFRKLTRDVYRHLQKCVETRKEFIPNQGIKHHTITNGLKYSLATGNWGDQKK 237
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ +AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHN WGM+
Sbjct: 238 SMSTKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNHHWGMVXXXXXXXXQ 297
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LMA ISVGS +P++EFLEEW +E LEE A S++ TK+FVNG W+G+HR
Sbjct: 298 ACGLVKNLSLMACISVGSMSAPVIEFLEEWGLEGLEENAHSSVP-CTKVFVNGVWMGVHR 356
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP +L+ L++LRR D I EVS++RDIR+RE+R++TD GR+CRPL I EN L+L+K
Sbjct: 357 DPAKLVKDLKELRRH-DDISPEVSVVRDIRERELRVYTDPGRVCRPLFIVENNKLVLEKA 415
Query: 593 H---IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H I++ K+ + + W L++ G VE +D EEET MI+M
Sbjct: 416 HVGWIESGKDDEGEEFKWDQLIKRGFVELLDAEEEETVMISM 457
>gi|343771975|emb|CCA65649.1| RNA polymerase II, partial [Taenia martis]
Length = 451
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/288 (76%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GKDFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD R+REIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRNREIRIYTDAGRICRPLVIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|283466452|emb|CBH32903.1| RNA polymerase II, partial [Taenia hydatigena]
Length = 451
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/288 (76%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GKDFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|283466426|emb|CBH32890.1| RNA polymerase II, partial [Echinococcus vogeli]
gi|283466428|emb|CBH32891.1| RNA polymerase II, partial [Echinococcus oligarthrus]
gi|283466430|emb|CBH32892.1| RNA polymerase II, partial [Echinococcus felidis]
gi|283466432|emb|CBH32893.1| RNA polymerase II, partial [Echinococcus granulosus]
gi|283466434|emb|CBH32894.1| RNA polymerase II, partial [Echinococcus equinus]
gi|283466436|emb|CBH32895.1| RNA polymerase II, partial [Echinococcus ortleppi]
gi|283466438|emb|CBH32896.1| RNA polymerase II, partial [Echinococcus canadensis]
gi|283466440|emb|CBH32897.1| RNA polymerase II, partial [Echinococcus canadensis]
gi|283466442|emb|CBH32898.1| RNA polymerase II, partial [Echinococcus canadensis]
gi|293323341|emb|CBJ17980.1| RNA polymerase II [Echinococcus oligarthrus]
Length = 451
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/288 (76%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GK+FNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKEFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLKRT 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HID LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|283466422|emb|CBH32888.1| RNA polymerase II, partial [Echinococcus multilocularis]
Length = 451
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/288 (76%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GK+FNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKEFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLKRT 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HID LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
Length = 1194
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 281/646 (43%), Positives = 371/646 (57%), Gaps = 76/646 (11%)
Query: 45 IDLQAEAQHTST--EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMM-PNEARLRNLTYS 101
I+ +E Q+T+ E + + + + S+PT S ++ P EARLRNLTY+
Sbjct: 17 IEAISEGQYTTIADNDEDQIKISITMDGVKASRPTVASTGAEQSSVLWPREARLRNLTYA 76
Query: 102 APLYVDITKTVVR-QGEEP--VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECP 158
A +YV +T+T V +G E ++ + IP+MLRS C L GL D + EC
Sbjct: 77 ASIYVGMTQTSVHIKGNESDDAVSKSMDIRLCTIPVMLRSEACNLYGLDDERRASIGECI 136
Query: 159 LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWV 217
D GGYFIINGSEK +IAQE+ TN VYVF K SKY++ EIRS E SS P TL +
Sbjct: 137 YDQGGYFIINGSEKAIIAQERQTTNKVYVFEKKQPSKYSWTAEIRSVPEGSSVPAQTLML 196
Query: 218 NMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 277
M A +S K+ I A LP + EIP+ I+FRALG DR I++HI Y+FDD EM
Sbjct: 197 CMYAHSSKSQIKNKYC--IWAKLPTLSDEIPVCILFRALGCENDRSIIQHICYNFDDVEM 254
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGAR--------GARPGVTKERRIKYAREILQKEMLP 329
ME +PSL EA + + VALNFI R G RP + R+K+A +LQK MLP
Sbjct: 255 MERFRPSLVEASECRTREVALNFIATRHPKMIDENGTRP---RSERVKFASRLLQKIMLP 311
Query: 330 HVGVSDF---CETKKAYFLGYMVHRLLLASLGRRELDDRDHY------------------ 368
H+ V DF KKA++LGYMVH+LL SL R E +DRDH
Sbjct: 312 HINV-DFGPNSNCKKAFYLGYMVHKLLNCSLNRNEQEDRDHISNKRMDLAGPMIGRLFHG 370
Query: 369 --------VRMYAQKFID--RGKDF-NLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 417
+R + +K ++ +G F N+ K+ II+DGL+YS ATGNWGD+ +
Sbjct: 371 LLYRFTKELRSHMKKVVNSRKGSSFINIMTNAKSSIISDGLKYSFATGNWGDRSRGMPTT 430
Query: 418 AGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 477
GVSQ LNRLT+ASSLS LRR+ SPI K+ KPR LH+T WGM+CPAETPEG + G+V
Sbjct: 431 TGVSQSLNRLTYASSLSSLRRLKSPIDTTSKVTKPRLLHSTQWGMMCPAETPEGQSCGIV 490
Query: 478 KNLALMAYISVGS----------QPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCW 527
KNLALM YISVG+ Q I LE +E LE IA S I TK+FVNG W
Sbjct: 491 KNLALMCYISVGNPVGAAGARDWQVEKIYRLLENNGVEELETIASSLIPKTTKVFVNGVW 550
Query: 528 VGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE--NG 585
VGIHRDP+ ++ R D ++VS++ DI++RE+RI DAGR CRPL + +
Sbjct: 551 VGIHRDPKVIL----DHREDFD---TDVSMVYDIQERELRITADAGRCCRPLYVVDPITQ 603
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ ++K H+ NL+ + LV + ++EY+ EEE MI M
Sbjct: 604 RVKIRKYHLRNLQPETM----FSDLVLNRLIEYVSAEEEEYCMIGM 645
>gi|340343132|emb|CCA95003.1| RNA polymerase II, partial [Taenia laticollis]
Length = 451
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/288 (76%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GKDFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLAKEIRLYAQKFIDKGKDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|283466444|emb|CBH32899.1| RNA polymerase II, partial [Taenia solium]
gi|283466446|emb|CBH32900.1| RNA polymerase II, partial [Taenia saginata]
gi|283466448|emb|CBH32901.1| RNA polymerase II, partial [Taenia asiatica]
gi|283466458|emb|CBH32906.1| RNA polymerase II, partial [Taenia ovis]
Length = 451
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/288 (76%), Positives = 247/288 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+G+DFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGRDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRIHTDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIHTDAGRICRPLIIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM + + V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMHAAV 294
>gi|283466450|emb|CBH32902.1| RNA polymerase II, partial [Taenia crassiceps]
gi|343771973|emb|CCA65646.1| RNA polymerase II, partial [Taenia twitchelli]
Length = 451
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/288 (76%), Positives = 248/288 (86%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GKDFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD R++EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRNQEIRIYTDAGRICRPLVIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|340343138|emb|CCA95006.1| RNA polymerase II, partial [Moniezia expansa]
Length = 451
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/288 (75%), Positives = 252/288 (87%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +++YAQKF+D+GKDF LE AI++ IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIKLYAQKFVDKGKDFGLESAIRSGIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICP+ETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPSETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE+APSAI + KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVAPSAIGKSCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRI+TDAGRICRPL+I E G+L+LK++
Sbjct: 187 SPDNLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGNLMLKRK 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI +LKE ++ Y WQ LV SGVVEYIDT+EEETTMIAM +Q+ V
Sbjct: 247 HIKHLKEMAFSRYSWQELVLSGVVEYIDTMEEETTMIAMGPSEMQAAV 294
>gi|283466456|emb|CBH32905.1| RNA polymerase II, partial [Taenia multiceps]
Length = 451
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/288 (76%), Positives = 246/288 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+G+DFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGRDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDG+L KPRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGRLTKPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRIHTDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIHTDAGRICRPLIIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM + + V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDVLEEETAMIAMGPAEMHAAV 294
>gi|283466454|emb|CBH32904.1| RNA polymerase II, partial [Taenia serialis]
Length = 451
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/288 (76%), Positives = 246/288 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+G+DFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGRDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDG+L KPRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGRLTKPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRIHTDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIHTDAGRICRPLIIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM + + V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMHAAV 294
>gi|283466424|emb|CBH32889.1| RNA polymerase II, partial [Echinococcus shiquicus]
Length = 451
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/288 (76%), Positives = 247/288 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+GK+FNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGKEFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLA+PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD R +EIRI+TDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRGQEIRIYTDAGRICRPLVIVEKGKLMLKRT 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HID LK R YN + WQ LV GVVEYID LEEET MIAM +Q+ V
Sbjct: 247 HIDQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMQAAV 294
>gi|340343134|emb|CCA95004.1| RNA polymerase II, partial [Taenia madoquae]
Length = 451
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/288 (75%), Positives = 246/288 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFID+G+DFNLE AI+++IITDGL+YSLATGNWGDQKK
Sbjct: 7 LLAFLFRGLFRNLTKEIRLYAQKFIDKGRDFNLENAIRSQIITDGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+QAR GVSQVLNRLTFAS+LSHLRR+NSPIGRDG+L +PRQLHNTLWGMICPAETPEG+
Sbjct: 67 ANQARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGRLTRPRQLHNTLWGMICPAETPEGS 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI KIFVNGCWVGIH
Sbjct: 127 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHN 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
P+ LM TLRKLRRQ+D+IVSEVS++RD RD+EIRIHTDAGRICRPL+I E G L+LK+
Sbjct: 187 SPDHLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIHTDAGRICRPLIIVEKGKLMLKRS 246
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGV 640
HI+ LK R YN + WQ LV GVVEYID LEEET MIAM + + V
Sbjct: 247 HIEQLKNRAYNRFCWQELVLYGVVEYIDILEEETAMIAMGPAEMHAAV 294
>gi|396941961|gb|AFN89697.1| RNA polymerase II, partial [Candida caseinolytica]
Length = 775
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/392 (56%), Positives = 283/392 (72%), Gaps = 40/392 (10%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++EAFVIQ++ VAL++IG RG+ G+ +++R++YAR+I+QKE+LPH+ + E
Sbjct: 1 EMLKPCIEEAFVIQDREVALDYIGRRGSALGINRDKRMRYARDIMQKELLPHITQEEGYE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KA+FLGYM+HR+LL +LGR E+DDRDH+ V Y
Sbjct: 61 TRKAFFLGYMIHRMLLCALGRAEVDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRY 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
QK ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA +RAGVSQVLNR TF+S+
Sbjct: 121 MQKCVETNKDFNLMLAVKSTTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGKLAKPRQLHNT WG+ICPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLICPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PI+ FLEEW ME LE+ P A ++T++FVNG W+G HRDP QL+ T+R LRR+ D I
Sbjct: 241 QPIVLFLEEWGMEPLEDYVPHASPNSTRVFVNGVWIGTHRDPAQLVETMRTLRRRGD-IS 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK------E 599
E SIIRDIR+RE +I TDAGR+ RPL I + G ++L+K H+ L +
Sbjct: 300 PEASIIRDIREREFKIFTDAGRVYRPLFIVDTDENSPTKGDIMLRKEHVQKLLNAEEEID 359
Query: 600 RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ N YGW LV+SGVVEYID EEET MIAM
Sbjct: 360 DEGNPYGWSSLVRSGVVEYIDAEEEETIMIAM 391
>gi|396941937|gb|AFN89685.1| RNA polymerase II, partial [cf. Ascoidea sp. NRRL Y-6762]
Length = 705
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/389 (57%), Positives = 277/389 (71%), Gaps = 37/389 (9%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++EAFVIQ++ VAL+FIG RG+ + KE+RI+YAR+ILQKE+LPH+ + E
Sbjct: 1 EMLKPCVEEAFVIQDREVALDFIGRRGSAQNIRKEKRIQYARDILQKELLPHITQQEGFE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
++KA+FLGYM+HRLLL +L R+E DDRDH+ + Y
Sbjct: 61 SRKAFFLGYMIHRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFKKLSKDIFRY 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
QK ++ KDFNL LA+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 121 MQKCVETNKDFNLTLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PI FLEEW ME LE+ P A DAT+IFVNG W+GIHR P L+ T+R LRR+ D I
Sbjct: 241 DPISYFLEEWGMEPLEDYVPHAAPDATRIFVNGVWIGIHRSPTALVETMRSLRRKGD-IS 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN- 604
EVSIIRDIR++E RI TDAGR+ RPL + +N G L L+K H+ L +YN
Sbjct: 300 PEVSIIRDIREKEFRIFTDAGRVFRPLFVVDNDESSDRKGELKLQKEHVHRLTNSEYNGD 359
Query: 605 --YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GV+EYID EEET MIAM
Sbjct: 360 EEYGWTSLVADGVIEYIDAEEEETVMIAM 388
>gi|396941955|gb|AFN89694.1| RNA polymerase II, partial [Dipodascopsis anomala]
Length = 765
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/391 (55%), Positives = 282/391 (72%), Gaps = 38/391 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ++ VAL+FIG RG G+ KE+R++YAR+I+Q+E+LPH+ S+
Sbjct: 1 VEMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMVH++L +L RRE+DDRDH+ V
Sbjct: 61 ETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRVLFRKLTRDVYK 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ +DFNL LA+K IT+GLRYSLATGNWG+QKKA +RAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A +A ++FVNG W+G+HRDP QL T+R LRR+ + I
Sbjct: 241 SQPIIFFLEEWGMEPLEDYVPHASPNAARVFVNGVWIGVHRDPAQLTQTIRSLRRRAN-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRH----IDNLKER 600
EVSI+RDIR++E +I TDAGR+ RPL + ++ G L+LKK H ID+ +
Sbjct: 300 SPEVSIVRDIREKEFKIFTDAGRVYRPLFVVDDDENSIRKGELMLKKEHVNKLIDDFESS 359
Query: 601 DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ + YGW LV G+VEYID EEET MIAM
Sbjct: 360 EEDKYGWNSLVADGIVEYIDAEEEETVMIAM 390
>gi|396941924|gb|AFN89679.1| RNA polymerase II, partial [Candida santjacobensis]
Length = 777
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/393 (56%), Positives = 282/393 (71%), Gaps = 41/393 (10%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E F +Q++ VAL++IG RG+ G+ +E+RI+YAR+ILQKE+LPH+ + E
Sbjct: 1 EMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGFE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRM-----------Y 372
T+KA+FLGYMVHR+LL +L RRE DDRDH+ RM Y
Sbjct: 61 TRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKMTKDIYRY 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
QK ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA +RAGVSQVLNR TF+S+
Sbjct: 121 MQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+A+PRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 LSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PI+ FLEEW ME LE+ P A +AT++FVNG W+G+HRDP L+ T+R LRR+ D I
Sbjct: 241 QPIIYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPAHLVDTMRSLRRKGD-IS 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK------- 598
EVSIIRDIR++E RI TDAGR+ RPL + +N G L L+K HI L
Sbjct: 300 PEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNDEESTRKGELKLRKEHIYELHNQEEADP 359
Query: 599 ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
E + +++GW LV +GVVEYID EEET MIAM
Sbjct: 360 ESEQDSFGWHSLVSNGVVEYIDGEEEETVMIAM 392
>gi|396941897|gb|AFN89666.1| RNA polymerase II, partial [Yamadazyma mexicana]
Length = 783
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/396 (55%), Positives = 283/396 (71%), Gaps = 44/396 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQEQ VAL+FIG RG G+ +E+RI+YAR+ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEQEVALDFIGRRGVL-GIRREKRIQYARDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
T+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ATRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 180 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW +E LE+ +PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I
Sbjct: 240 SEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVDTIRSLRRKGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL + ++ G L+LKK HI L + +Y++
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNQYSETKGELVLKKEHIKKLTDSEYDD 358
Query: 605 ---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV G++EY+D EEET MIAM
Sbjct: 359 YGYDDEQQSYGWSSLVNDGIIEYVDAEEEETIMIAM 394
>gi|396941931|gb|AFN89682.1| RNA polymerase II, partial [Sugiyamaella smithiae]
Length = 771
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/395 (56%), Positives = 282/395 (71%), Gaps = 42/395 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F +Q++ VAL++IG RG+ G+ +E+RI+YAR+ILQKE+LPH+ +
Sbjct: 1 LEMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRM----------- 371
ET+KA+FLGYMVHR+LL +L RRE DDRDH+ RM
Sbjct: 61 ETRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA +RAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+A+PRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A +AT+IFVNG W+G+HRDP QL+ T+R LRR+ D I
Sbjct: 241 SQPIIYFLEEWGMEPLEDYVPHASPNATRIFVNGVWIGVHRDPAQLVDTMRSLRRRGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERD--- 601
EVSIIRDIR++E RI TDAGR+ RPL + +N G L L+K H+ L+ ++
Sbjct: 300 SPEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNEEESSSRGELKLRKEHVYELQRQEEEP 359
Query: 602 -----YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GW LV +G+VEYID EEET MIAM
Sbjct: 360 DSLDGSEPTGWSYLVSNGIVEYIDGEEEETVMIAM 394
>gi|396941953|gb|AFN89693.1| RNA polymerase II, partial [Lipomyces starkeyi]
Length = 773
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/391 (55%), Positives = 280/391 (71%), Gaps = 38/391 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ++ VAL+FIG RG G+ KE+R++YAR+I+Q+E+LPH+ S+
Sbjct: 1 LEMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM-------------------------- 371
ET+KA+FLGYMVH++L +L RRE+DDRDH+ +
Sbjct: 61 ETRKAFFLGYMVHKMLQCALERREVDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDMYK 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ +DFNL LA+K IT+GLRYSLATGNWG+QKKA +RAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTS 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A +AT++FVNG W+G HRDP L T+R LRR D I
Sbjct: 241 SQPIIYFLEEWGMEPLEDYVPHATPNATRVFVNGVWIGTHRDPAALAETIRSLRR-TDHI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE----R 600
+EVSI+RDIR++E +I TDAGR+ RPL + + G L+L+K H++ L E
Sbjct: 300 SAEVSIVRDIREKEFKIFTDAGRVYRPLFVVDTDKSSPHCGELMLRKGHVNRLLEDFEST 359
Query: 601 DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ + YGW LV G+VEY+D EEET MIAM
Sbjct: 360 EEDRYGWTSLVSEGIVEYVDAEEEETVMIAM 390
>gi|396941939|gb|AFN89686.1| RNA polymerase II, partial [Yarrowia lipolytica]
Length = 780
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/400 (56%), Positives = 282/400 (70%), Gaps = 47/400 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ++ VAL++IG RG+ GV +ERR++YAR+ILQKE+LPH+ +
Sbjct: 1 LEMLKPCIEEAFVIQDREVALDYIGRRGSAVGVNRERRVRYARDILQKELLPHITQEEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRM----------- 371
ET+KAYFLGYMVHR+LL +LGR+E DDRDH+ RM
Sbjct: 61 ETRKAYFLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLMAGIFRMLFKKLTKDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y K ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA +RAGVSQVLNR TFAS
Sbjct: 121 YMLKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFAS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FL+EW ME LE+ P +T++FVNG WVG+HRD QL ++ LRR D I
Sbjct: 241 SFPIINFLDEWGMEPLEDYVPHTHTTSTRVFVNGVWVGVHRDATQLTDMIKSLRRMGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE----- 599
SEVSIIRDIR++EIRI TDAGR+ RPL + EN G L+L+K HI L++
Sbjct: 300 ESEVSIIRDIREKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHIYQLQQQMAEQ 359
Query: 600 --------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ N GW LV +GV+EYID EEET MIAM
Sbjct: 360 AETEGDEGKGDKNTGWNWLVDNGVIEYIDGEEEETVMIAM 399
>gi|396941951|gb|AFN89692.1| RNA polymerase II, partial [Dipodascopsis uninucleata]
Length = 772
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/390 (56%), Positives = 276/390 (70%), Gaps = 38/390 (9%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++EAFVIQ++ VAL+FIG RG G+ KE+R++YAR+I+Q+E+LPH+ S+ E
Sbjct: 1 EMLKPCIEEAFVIQDREVALDFIGRRGTAMGINKEKRLRYARDIMQRELLPHITQSEGYE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KA+FLGYMVH++L +L RRELDDRDH+ V Y
Sbjct: 61 TRKAFFLGYMVHKMLQCALERRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYKY 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
QK ++ +DFNL LA+K IT+GLRYSLATGNWG+QKKA +RAGVSQVLNR TF+S+
Sbjct: 121 MQKCVETNRDFNLTLAVKPNTITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTFSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTSISVGTPS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PI+ FLEEW ME LE+ P A +AT++FVNG W+G HRDP L T+R LRR+ I
Sbjct: 241 QPIIFFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGTHRDPAALTETIRSLRRRAH-IS 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAE-------NGSLLLKKRH----IDNLKERD 601
EVSIIRDIR++E +I TDA R+ RPL I NG L+L+K H ID+ + +
Sbjct: 300 PEVSIIRDIREKEFKIFTDAXRVMRPLFIVNNDKSSPRNGELMLRKEHISKLIDDFESTE 359
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ YGW LV G+VEY+D EEET MIAM
Sbjct: 360 EDRYGWSSLVSDGIVEYLDAEEEETAMIAM 389
>gi|396941926|gb|AFN89680.1| RNA polymerase II, partial [Candida tepae]
Length = 773
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/391 (55%), Positives = 280/391 (71%), Gaps = 38/391 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F IQ++ VAL++IG RG+ G+++E+RI+YAR+ILQKE+LPH+ +
Sbjct: 1 LEMLKPCIEEGFFIQDREVALDYIGRRGSAMGISREKRIRYARDILQKELLPHITQEEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMVHR+LL +L RRE DDRDH+ +
Sbjct: 61 ETRKAFFLGYMVHRMLLCALERREQDDRDHFGKKRLDLAGPLLANLFRLLFRKLTKDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ KDFNL LA+K+ +T+GL+YSLATGNWGDQKKA +RAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTLTNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSH RR N+PIGRDGK+A+PRQLHNT WG +CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 TLSHXRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNLSLMSCISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A D+T++FVNG W+G+HRDP L+ T+R LRR+ D I
Sbjct: 241 SQPIVYFLEEWGMEPLEDFVPHASTDSTRVFVNGVWIGVHRDPGHLVDTMRSLRRKGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERD--- 601
EVSIIRDIR++E RI TDAGR+ RPL + +N G L L+K HI L ++
Sbjct: 300 SPEVSIIRDIREKEFRIFTDAGRVYRPLFVVDNDEESSRKGELKLRKEHIYELLTKEETE 359
Query: 602 -YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
++ GW L+ +G+VEYID EEET MIAM
Sbjct: 360 GEDSAGWSSLISNGIVEYIDGEEEETVMIAM 390
>gi|396941959|gb|AFN89696.1| RNA polymerase II, partial [Botryozyma nematodophila]
Length = 776
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/390 (55%), Positives = 280/390 (71%), Gaps = 39/390 (10%)
Query: 280 MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCET 339
M+KP ++EAFVIQ + VAL++IG RG+ G+ +E+R++YAR+I+QKE+LPH+ + ET
Sbjct: 1 MLKPCIEEAFVIQSREVALDYIGRRGSAVGINREKRLRYARDIMQKELLPHITQDEGYET 60
Query: 340 KKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYA 373
+KA+FLGYMVHR+LL +L R E+DDRDH+ V Y
Sbjct: 61 RKAFFLGYMVHRMLLCALERSEVDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYM 120
Query: 374 QKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSL 433
QK ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA +RAGVSQVLNR TF+S+L
Sbjct: 121 QKCVETSKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYTFSSTL 180
Query: 434 SHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPS 493
SHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+L++ ISVGS
Sbjct: 181 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSCISVGSPSQ 240
Query: 494 PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS 553
PI+ FLEEW ME LE+ P A ++T++FVNG W+G HRDP L+ T+R LRR+ D I
Sbjct: 241 PIIFFLEEWGMEPLEDYVPHASPNSTRVFVNGVWIGTHRDPASLVDTMRTLRRRGD-ISP 299
Query: 554 EVSIIRDIRDREIRIHTDAGRICRPLLIAE-------NGSLLLKKRHIDNLKERDYN--- 603
EVSI+RDIR+RE RI TDAGR+ RPL + + G L+L+K HI L ++D +
Sbjct: 300 EVSIVRDIREREFRIFTDAGRVYRPLFVVDIEDGSPTKGELVLRKEHIHKLLDQDLDAPE 359
Query: 604 --NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW LV++G+VEYID EEET MI M
Sbjct: 360 EEQFGWPQLVENGIVEYIDAEEEETIMITM 389
>gi|396941916|gb|AFN89675.1| RNA polymerase II, partial [Nadsonia fulvescens]
Length = 782
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 226/417 (54%), Positives = 292/417 (70%), Gaps = 53/417 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ++ VAL++IG RG+ G+ +E+R++YAR+I+QKE+LPH+ +
Sbjct: 1 LEMLKPCIEEAFVIQDREVALDYIGRRGSAMGINREKRVRYARDIMQKELLPHITQEEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRM----------- 371
ET+KAYFLGYMVHR+LL +L R + DDRDH+ RM
Sbjct: 61 ETRKAYFLGYMVHRMLLCALERADQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ KDFNL LA+K IT+GL+YSLATGNWGDQKKA ARAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNKDFNLTLAVKANTITNGLKYSLATGNWGDQKKAMSARAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LMA ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A ++T+IFVNG W+G+HR+P L+ T++ LRR+ DI
Sbjct: 241 SQPIVYFLEEWGMEPLEDYVPHASPNSTRIFVNGVWIGVHREPAHLVETMKTLRRKGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL---KERD 601
SEVSI+RDIR++E +I TDAGR+ RPL + ++ G L+LKK HI L ++RD
Sbjct: 300 GSEVSIVRDIRNKEFKIFTDAGRVYRPLFLVDSNPESERKGELMLKKEHIYQLMNNQDRD 359
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
++ ++ Y D + W LV +G+VEYID EEET MIAM+P
Sbjct: 360 IDDDNYEA--------YDD--------VFTWNSLVGNGIVEYIDGEEEETVMIAMTP 400
>gi|396941918|gb|AFN89676.1| RNA polymerase II, partial [Zygoascus hellenicus]
Length = 779
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/394 (56%), Positives = 279/394 (70%), Gaps = 41/394 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F +Q++ VAL++IG RG+ G+ +E+RI+YAR+ILQKE+LPH+ +
Sbjct: 1 VEMLKPCIEEGFFVQDREVALDYIGRRGSAMGINREKRIRYARDILQKELLPHITQEEGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRM----------- 371
ET+KA+FLGYMVHR+LL +L RR DDRDH+ RM
Sbjct: 61 ETRKAFFLGYMVHRMLLCALERRGEDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ KDF L LA+K+ IT+GL+YSLATGNWGDQKKA RAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNKDFILTLAVKSSTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+A+PRQLHNT WG++CPAETPEG A GLVKNL+LM ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A +AT++FVNG W+G+HRDP L+ T+R LRR+ D I
Sbjct: 241 SQPIIYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPAHLVDTMRSLRRKGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL------- 597
EVSIIRDIR++E RI TDAGRI RPL + +N G L+LKK H+ L
Sbjct: 300 SPEVSIIRDIREKEFRIFTDAGRIYRPLFLVDNDPESPNKGELVLKKEHVFKLLQSEEEG 359
Query: 598 KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ D ++GW LV +GV+EYID EEET MIAM
Sbjct: 360 NDGDAASFGWSSLVSNGVIEYIDGEEEETIMIAM 393
>gi|396941895|gb|AFN89665.1| RNA polymerase II, partial [Yamadazyma philogaea]
Length = 782
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/395 (55%), Positives = 280/395 (70%), Gaps = 44/395 (11%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQEQ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 EMLKPCVEEGFVIQEQEVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFA 59
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KA+FLGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 60 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYNY 119
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSS 239
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PIL FLEEW +E LE+ +PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I
Sbjct: 240 EPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPASLVDTIRSLRRKGD-IA 298
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN- 604
EVSIIRD+R+RE +I TDAGR+ RPL I ++ G L+L K HI L + +Y+
Sbjct: 299 PEVSIIRDVREREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNKTHIKKLMDSEYDEF 358
Query: 605 --------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GV+EY+D EEET MIAM
Sbjct: 359 SYDDEQEAYGWSSLVNEGVIEYVDAEEEETIMIAM 393
>gi|396941857|gb|AFN89646.1| RNA polymerase II, partial [Clavispora lusitaniae]
Length = 783
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/414 (54%), Positives = 284/414 (68%), Gaps = 51/414 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEAGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTA 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D T++FVNG WVG HR+P QL+ T+R+LRR+ DI
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDI- 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR+RE +I TDAGR+ RPL I ++ G L+L+K HI L +Y+
Sbjct: 299 SPEVSIIRDIREREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDE 358
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
Y EE W LV GVVEY+D EEET MIAM+P
Sbjct: 359 YD----------------EESQANAYTWSSLVNDGVVEYVDAEEEETIMIAMTP 396
>gi|167650530|gb|ABZ90898.1| RNA polymerase II subunit 2 [Agaricus subsubensis]
Length = 368
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/367 (58%), Positives = 276/367 (75%), Gaps = 31/367 (8%)
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
+ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLL
Sbjct: 1 REVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLL 60
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA+L RRELDDRDH+ V Y QK ++ K+FNL L
Sbjct: 61 LAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLAL 120
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
A+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+G
Sbjct: 121 AVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG 180
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
K+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+L
Sbjct: 181 KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESL 240
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EE A S TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R
Sbjct: 241 EENAHSTTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELR 298
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEE 624
I+TDAGR+CRPL I EN LLL KRHI ++ + + N Y W+ L++ GV+E +D EE
Sbjct: 299 IYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEDNEYKWEQLIKGGVIELLDAEEE 358
Query: 625 ETTMIAM 631
ET MI+M
Sbjct: 359 ETVMISM 365
>gi|396941873|gb|AFN89654.1| RNA polymerase II, partial [Candida multigemmis]
Length = 779
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/394 (55%), Positives = 280/394 (71%), Gaps = 42/394 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KAYFLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ETRKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN- 603
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K HI L +Y+
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNSEYDE 358
Query: 604 ------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+YGW LV G+VEY+D EEET MIAM
Sbjct: 359 FDEDSESYGWSSLVSDGIVEYVDAEEEETIMIAM 392
>gi|167650532|gb|ABZ90899.1| RNA polymerase II subunit 2 [Agaricus subsubensis]
Length = 410
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/367 (58%), Positives = 276/367 (75%), Gaps = 31/367 (8%)
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
+ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLL
Sbjct: 1 REVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLL 60
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA+L RRELDDRDH+ V Y QK ++ K+FNL L
Sbjct: 61 LAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLAL 120
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
A+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+G
Sbjct: 121 AVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG 180
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
K+AKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISVGS +P++EFLEEW +E+L
Sbjct: 181 KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESL 240
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIR 567
EE A S TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVS++RDIR++E+R
Sbjct: 241 EENAHSTTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK-DDISPEVSVVRDIREKELR 298
Query: 568 IHTDAGRICRPLLIAENGSLLLKKRHI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEE 624
I+TDAGR+CRPL I EN LLL KRHI ++ + + N Y W+ L++ GV+E +D EE
Sbjct: 299 IYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEDNEYKWEQLIKGGVIELLDAEEE 358
Query: 625 ETTMIAM 631
ET MI+M
Sbjct: 359 ETVMISM 365
>gi|396941875|gb|AFN89655.1| RNA polymerase II, partial [Kurtzmaniella cleridarum]
Length = 781
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/394 (55%), Positives = 279/394 (70%), Gaps = 43/394 (10%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LPH+ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPHITQEEGFE 59
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KAYFLGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 60 TRKAYFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNY 119
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSS 239
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P QL+ T+R LRR+ D I
Sbjct: 240 EPILYFLEEWGMEPLEDYVPSTSPDSTRVFVNGVWVGTHREPSQLVDTMRSLRRRGD-IS 298
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY--- 602
EVSIIRDIR++E +I TDAGR+ RPL + ++ G L L+K +I L +Y
Sbjct: 299 PEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETHGELKLQKENIHKLLNSEYGDY 358
Query: 603 -----NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N Y W L+ GVVEY+D EEET MIAM
Sbjct: 359 DEDSENMYNWTSLLNDGVVEYVDAEEEETIMIAM 392
>gi|396941885|gb|AFN89660.1| RNA polymerase II, partial [Schwanniomyces etchellsii]
Length = 782
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/396 (55%), Positives = 281/396 (70%), Gaps = 44/396 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ +TDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D+T++FVNG WVG HRDP L+ T++ LRR+ D I
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPAHLVATMKNLRRRGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN- 603
EVSIIRDIR++E RI TDAGR+ RPL I ++ G L LKK H++ L +Y+
Sbjct: 299 SPEVSIIRDIREKEFRIFTDAGRVYRPLFIVDDDPDSETKGDLKLKKEHVNKLINAEYDE 358
Query: 604 --------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+Y W LV GVVEY+D EEE+ MIAM
Sbjct: 359 FNEDPENVSYSWSSLVNDGVVEYVDAEEEESIMIAM 394
>gi|396941920|gb|AFN89677.1| RNA polymerase II, partial [Candida blankii]
Length = 771
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/419 (53%), Positives = 284/419 (67%), Gaps = 61/419 (14%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM++P ++E FV+Q++ VAL+ IG RG+ G+ +E+RI+YAR+ILQKE+LPH+ +
Sbjct: 1 LEMLRPCIEEGFVVQDREVALDMIGRRGSAIGINREKRIRYARDILQKELLPHITQEEGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRM----------- 371
E +KA+FLGYMVHR+LL +L RRE DDRDH+ RM
Sbjct: 61 ENRKAFFLGYMVHRMLLVALERREPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA RAGVSQVLNR TF+S
Sbjct: 121 YLQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+A+PRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A +AT++FVNG W+G+HRDP L+ T+R LRR+ DI
Sbjct: 241 SQPIVYFLEEWGMEPLEDYVPHASPNATRVFVNGVWIGVHRDPATLVDTMRALRRKGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E RI TDAGR+ RPL + +N G L L+K H+ L
Sbjct: 300 SPEVSIIRDIREKEFRIFTDAGRVYRPLFLVDNDEDSPYKGELKLRKDHVRELIR----- 354
Query: 605 YGWQVLVQSGVVEYIDTLEEETTM-----IAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+EEE M ++ W LV +G+VEYID EEET MIAM+P
Sbjct: 355 -----------------MEEEGDMETGEPVSTWSSLVNNGIVEYIDGEEEETVMIAMTP 396
>gi|396941811|gb|AFN89623.1| RNA polymerase II, partial [Ascoidea rubescens]
Length = 777
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/414 (53%), Positives = 279/414 (67%), Gaps = 50/414 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+ P +DEAF +Q+ VALNFIG RG G KE+RI+YA++ILQ+E+LPH+ +
Sbjct: 1 LEMLXPCIDEAFSVQDTQVALNFIGTRGRSLGARKEKRIQYAKDILQRELLPHITQLEGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM+HRLLL +L R+E DDRDH+ +
Sbjct: 61 ESRKAFFLGYMIHRLLLCALERKEADDRDHFGKKRLDLAGPLLAKLFRILFRNLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK I+ K FNL++AIK+ IIT+GL+YSLATGNWG+QKKA ++AGVSQVLNR T++S
Sbjct: 121 YLQKCIESNKAFNLKMAIKSGIITEGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSVISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
S ILE+LEE+ +E LE P D TKIFVNG WVGIH P ++ +R LRR DI
Sbjct: 241 SSIILEYLEEFGLEPLESFVPHEQKDTTKIFVNGVWVGIHPSPSDVVSQMRLLRRSADI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
SEVSIIRDIR++E +I TDAGR+CRPL + EN G L KK H D L+ D
Sbjct: 300 SSEVSIIRDIREKEFKIVTDAGRVCRPLFVVENDPDSDDFGRLKFKKEHTDKLRRSDAG- 358
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
D E+E + WQ L+Q G++EY+D EEET MIAM+P
Sbjct: 359 ---------------DLDEDERDELFTWQSLLQQGIIEYVDAEEEETIMIAMTP 397
>gi|396941877|gb|AFN89656.1| RNA polymerase II, partial [Priceomyces haplophilus]
Length = 774
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/412 (54%), Positives = 285/412 (69%), Gaps = 53/412 (12%)
Query: 280 MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCET 339
M+KPS++E FVIQE+ +AL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET
Sbjct: 1 MLKPSVEEGFVIQEREIALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFET 59
Query: 340 KKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYA 373
+KAYFLGYMV+RLLLA+L R+E DDRDH+ + Y
Sbjct: 60 RKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYM 119
Query: 374 QKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSL 433
Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S+L
Sbjct: 120 QRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTL 179
Query: 434 SHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPS 493
SHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 239
Query: 494 PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS 553
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ DI
Sbjct: 240 PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTIRNLRRRGDI-SP 298
Query: 554 EVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYG 606
EVSIIRDIR++E +I TDAGR+ RPL + ++ G L LKK H+ L +Y+
Sbjct: 299 EVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETKGELKLKKEHVHKLLNSEYD--- 355
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
EY D E T W L+ G+VEY+D EEET MIAM+P
Sbjct: 356 ----------EYDDEAESYT-----WSSLLSDGIVEYVDAEEEETIMIAMTP 392
>gi|396941957|gb|AFN89695.1| RNA polymerase II, partial [Trigonopsis variabilis]
Length = 757
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/376 (57%), Positives = 269/376 (71%), Gaps = 37/376 (9%)
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q++ VAL++IG RGA G+ KE+R++YAR+ILQKE+LPH+ + ET+KA+FLGYMVHR
Sbjct: 1 QDREVALDYIGRRGAAMGINKEKRLRYARDILQKELLPHITQEEGFETRKAFFLGYMVHR 60
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
+LL ++GR E+DDRDH+ V Y QK ++ KDFNL
Sbjct: 61 MLLVAMGRAEVDDRDHFGKKRLDLAGPLLAKLFRDLFRKLTRDVYRYMQKCVETNKDFNL 120
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
LA+K+ IT+GLRYSLATGNWGDQKK ARAGVSQVLNR TF+S+LSHLRR N+PIGR
Sbjct: 121 TLAVKSNTITNGLRYSLATGNWGDQKKFMSARAGVSQVLNRYTFSSTLSHLRRTNTPIGR 180
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
DGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS PI+ FLEEW ME
Sbjct: 181 DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPAEPIICFLEEWGME 240
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
LE+ P A + T++FVNG W+G+HRD L T++ LRR+ D I SEVSIIRDIR++E
Sbjct: 241 PLEDFVPHASPNVTRVFVNGVWIGVHRDASHLTDTMKSLRRKGD-ISSEVSIIRDIREKE 299
Query: 566 IRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE---RDYNNYGWQVLVQSGV 615
RI TDAGR+ RPL + +N G L+L+K H+ L E + + YGW LVQ GV
Sbjct: 300 FRIFTDAGRVYRPLFLVDNDPDSERKGELILQKEHVSRLLEDEGEEGSGYGWSSLVQDGV 359
Query: 616 VEYIDTLEEETTMIAM 631
VEYID EEET MIAM
Sbjct: 360 VEYIDGEEEETIMIAM 375
>gi|396941861|gb|AFN89648.1| RNA polymerase II, partial [Metschnikowia bicuspidata]
Length = 781
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/413 (53%), Positives = 282/413 (68%), Gaps = 52/413 (12%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKEMLP++ E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKEMLPNITQEAGFE 59
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
++KA+FLGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 60 SRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTRDIYNY 119
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+Q+KA ARAGVSQVLNR T++S+
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGVSQVLNRYTYSST 179
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTSS 239
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PIL FLEEW ME LE+ PS D T++FVNG WVG HR+P QL+ T+R+LRR+ DI
Sbjct: 240 EPILYFLEEWGMEPLEDYVPSNAPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDI-S 298
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNY 605
EVSIIRDIR+ E +I TDAGR+ RPL I ++ G L+L+K H+ L Y+ Y
Sbjct: 299 PEVSIIRDIREMEFKIFTDAGRVYRPLFIVDDDPESETKGELMLQKEHVHKLLNSAYDEY 358
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+E+ + W LV GVVEY+D EEET MIAM+P
Sbjct: 359 -----------------DEDDSSAYTWSSLVNDGVVEYVDAEEEETIMIAMTP 394
>gi|396941887|gb|AFN89661.1| RNA polymerase II, partial [Scheffersomyces stipitis]
Length = 783
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/397 (54%), Positives = 280/397 (70%), Gaps = 45/397 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHRDPANLVDTMRSLRRRGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN- 603
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K H+ NL +Y+
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDEAESETKGDLKLQKEHVHNLLSSEYDE 358
Query: 604 ---------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+Y W L+ GVVEY+D EEET MIAM
Sbjct: 359 YEDPDNEGASYTWSSLINDGVVEYVDAEEEETIMIAM 395
>gi|396941949|gb|AFN89691.1| RNA polymerase II, partial [Galactomyces geotrichum]
Length = 775
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/426 (52%), Positives = 291/426 (68%), Gaps = 48/426 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F +Q++ VAL++IG RG+ G+T+E+R++YAR+ILQKE+LP++ +
Sbjct: 1 LEMLKPCIEEGFFVQDREVALDYIGRRGSATGITREKRMRYARDILQKELLPNITQQEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMVHRLLL +L R++ DDRDH+ +
Sbjct: 61 ETRKAFFLGYMVHRLLLCALDRQDPDDRDHFGKKRLDLAGPLLAQLFRILFKKLTRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA RAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+A+PRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P A +AT++FVNG WVG+HRDP ++ T+R LRR+ D I
Sbjct: 241 SHPIVCFLEEWGMEPLEDYVPHASPNATRVFVNGVWVGVHRDPTLIVDTMRALRRRGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL--KERDY 602
EVSIIRDIR +E RI TDAGRI RPL + +N G L L+K ++ + E
Sbjct: 300 SPEVSIIRDIRSKEFRILTDAGRIYRPLFVVDNDPNSNTRGELKLRKEDVEKILNSEEGL 359
Query: 603 NN----YGWQVLVQSGVVEYIDTLEEETTMIAMW--------QVLVQSGVVEYIDTLEEE 650
+N GW LV +G+VEYID EEET MIAM Q+ V E +DTL+
Sbjct: 360 DNGEEPIGWSYLVNNGIVEYIDGEEEETVMIAMTPEDLETSRQMQFGVEVAEEVDTLQRV 419
Query: 651 TTMIAM 656
+ A+
Sbjct: 420 KPLSAL 425
>gi|396941879|gb|AFN89657.1| RNA polymerase II, partial [Priceomyces castillae]
Length = 777
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/394 (55%), Positives = 281/394 (71%), Gaps = 42/394 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KPS++E FVIQE+ +AL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPSVEEGFVIQEREIALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KAYFLGYMV+RLLLA+L R+E DDRDH+ +
Sbjct: 60 ETRKAYFLGYMVNRLLLAALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG +CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGSVCPAETPEGQACGLVKNLSLMSCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTIRNLRRRGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN- 603
EVSIIRDIR++E +I TDAGR+ RPL + ++ G L LKK ++ L +Y+
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDPESETKGELKLKKEYVHKLLNSEYDE 358
Query: 604 ------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+Y W L+ G+VEY+D EEET MIAM
Sbjct: 359 YDEDAESYTWSSLLSDGIVEYVDAEEEETIMIAM 392
>gi|396941871|gb|AFN89653.1| RNA polymerase II, partial [Spathaspora passalidarum]
Length = 779
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/392 (55%), Positives = 279/392 (71%), Gaps = 41/392 (10%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFE 59
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KA+FLGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 60 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNY 119
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPS 239
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PIL FLEEW ME+LE+ PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I
Sbjct: 240 EPILYFLEEWGMESLEDYVPSNSPDSTRVFVNGVWVGTHRDPVNLVDTMRSLRRRGD-IS 298
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN- 604
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K H+ L +Y++
Sbjct: 299 PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQKEHVLKLLNSEYDDY 358
Query: 605 -----YGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W LV G+VEY+D EEET MIAM
Sbjct: 359 DGDEGYNWTSLVNDGIVEYVDAEEEETIMIAM 390
>gi|396941901|gb|AFN89668.1| RNA polymerase II, partial [Yamadazyma triangularis]
Length = 783
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/396 (55%), Positives = 278/396 (70%), Gaps = 44/396 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQEQ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEQEVALDFIGRRGVL-GIKREKRIQYAKDILQKELLPNITQDEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM-------------------------- 371
T+KA+FLGYMV+RLLL +L R+E DDRDH+ R
Sbjct: 60 ATRKAFFLGYMVNRLLLCALERKEPDDRDHFGRKRLDLAGPLLANLFRILFKKLTRDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE PS DAT+ FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 240 SEPILLFLEEWGMEPLENYVPSHSPDATRCFVNGVWVGTHREPALLVETIRNLRRKGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL + ++ G L L K HI+ L +Y++
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNPDSDTKGDLKLTKDHINRLMRAEYSD 358
Query: 605 ---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GV+EY+D EEET MIAM
Sbjct: 359 YDAYDDESEYGWSSLVNEGVIEYVDAEEEETIMIAM 394
>gi|396941891|gb|AFN89663.1| RNA polymerase II, partial [Millerozyma farinosa]
Length = 782
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/395 (55%), Positives = 279/395 (70%), Gaps = 44/395 (11%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + E
Sbjct: 2 EMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KA+FLGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 61 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRLLFRKLTKDIYNY 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ K+FN LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S+
Sbjct: 121 MQRCVENDKEFNSTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PIL FLEEW ME LE+ PS +AT++FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 241 EPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGTHREPAHLVETMRNLRRRGD-IS 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN-- 603
EVSI+RDIR+RE +I TDAGR+ RPL I ++ G L LKK H++ L +Y+
Sbjct: 300 PEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETKGELKLKKDHVNKLLNAEYDEF 359
Query: 604 -------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
NY W L+ GVVEY+D EEET MIAM
Sbjct: 360 SDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAM 394
>gi|396941881|gb|AFN89658.1| RNA polymerase II, partial [Debaryomyces hansenii]
Length = 781
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/414 (52%), Positives = 287/414 (69%), Gaps = 51/414 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTS 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ DI
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGDI- 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L LKK ++ L +Y++
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDAESETKGELKLKKENVHKLINAEYDD 358
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+G ++ ++ W LV G+VEY+D EEET MIAM+P
Sbjct: 359 FG----------------DDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTP 396
>gi|396941893|gb|AFN89664.1| RNA polymerase II, partial [Meyerozyma guilliermondii]
Length = 786
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/399 (55%), Positives = 279/399 (69%), Gaps = 48/399 (12%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQE+ VAL+FIG RGA G+ +E+RI+YA++ILQKE+LP++ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGAL-GIKREKRIQYAKDILQKELLPNITQDEGFE 59
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KA+FLGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 60 TRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNY 119
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ K FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 120 MQRCVENDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 239
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 240 EPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGD-IS 298
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN- 604
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K HI L +Y+
Sbjct: 299 PEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEE 358
Query: 605 ------------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GVVEY+D EEET MIAM
Sbjct: 359 YATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAM 397
>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
Length = 1177
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 265/680 (38%), Positives = 380/680 (55%), Gaps = 68/680 (10%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAE---AQHTSTEVE 59
Q W+VI+ +F+ +GLV+QQL S++ FI V +++D I LQ++ A +
Sbjct: 18 QNDMWMVISKFFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKIKMDFN 77
Query: 60 TPPRYLLKFEQIYLS-------KPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV 112
+ + + I++S +PT E + P +RLR+L+YS L DI V
Sbjct: 78 SNDDDEDQGKTIHISFGTSTVLRPTTPEG----KQLTPMISRLRSLSYSLILRSDIRVVV 133
Query: 113 VRQGEEPVTTQHQKSFIGKIPIMLRSTYC-LLNGLTDRDLTE-LNECPLDPGGYFIINGS 170
+ + I K+P+M+RS YC L N DR + + LNEC DPGGYFI+NGS
Sbjct: 134 MDSNKNMKQLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGGYFIVNGS 193
Query: 171 EKVLIAQEKMATNTVYVFSMKDS-KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKV+I QE M N ++ K KY TEIRS + R + + ++A + ++
Sbjct: 194 EKVIIGQEHMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLLAPTAKQPER 253
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
I A L ++ IP+ I+FRAL F D++IL+ I YD +D E +++++PS++E+
Sbjct: 254 P-----IHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVLRPSIEESS 308
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
+ L+F+G R + K +R++ A+ +L + +LPH+G + T KA+F+GYM
Sbjct: 309 SFLDDRACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMA 368
Query: 350 HRLLLASLGRRELDDRDHY-----------------------VRMYAQKFIDRGKDFNLE 386
H L+ LGRR+ DDRDHY ++ Q R KD N++
Sbjct: 369 HNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLEKRLKDGNID 428
Query: 387 LAIKT------------KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLS 434
K+ K IT GL YS+ TGNW Q++A ++AGVSQ+LNRLTF S+LS
Sbjct: 429 QMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQA-GSKAGVSQMLNRLTFLSTLS 487
Query: 435 HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ--- 491
+LRR N+PIGRDGKL PR LHNT WG ICP ETPEG + GL+KNLALM+ ++V +
Sbjct: 488 NLRRTNTPIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLALMSIVTVNRELEA 547
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
I LE+ +++I P I D+TKIF+NG W GIH D LM TL RR + I
Sbjct: 548 GDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYGIHTDAYDLMETLLSERRSLK-I 606
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLV 611
S+VS + IRD+EI I TD GRI RP+LI + L LKK + + N W+VL
Sbjct: 607 PSDVSFVHHIRDQEIFIWTDGGRITRPVLIVNDMHLTLKKSVLYD------ENTNWKVLR 660
Query: 612 QSGVVEYIDTLEEETTMIAM 631
G+VEY+D EEET +IA+
Sbjct: 661 YKGMVEYLDIDEEETKLIAL 680
>gi|396941899|gb|AFN89667.1| RNA polymerase II, partial [Yamadazyma scolyti]
Length = 783
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/396 (54%), Positives = 278/396 (70%), Gaps = 44/396 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQEQ VAL+FIG RG G+ +E+RI+Y ++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEQEVALDFIGRRGVL-GIRREKRIQYXKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
T+KA+FLG MV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ATRKAFFLGXMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K FNL LA+K++ ITDGLRYS ATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKVFNLTLAVKSQTITDGLRYSXATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 180 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW +E LE+ +P+ D T++FVNG WVG HRDP L+ T+R LRR+ D I
Sbjct: 240 SEPILVFLEEWGLEPLEDYSPATSPDTTRVFVNGVWVGTHRDPASLVDTIRSLRRKGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL I ++ G LLL K HI L + +Y++
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPSSETKGELLLNKTHIKKLMDSEYDD 358
Query: 605 ---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV+ G++EY+D EEET MIAM
Sbjct: 359 YNYDDEQETYGWSSLVRDGIIEYVDAEEEETIMIAM 394
>gi|396941865|gb|AFN89650.1| RNA polymerase II, partial [Hyphopichia heimii]
Length = 783
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 222/414 (53%), Positives = 284/414 (68%), Gaps = 51/414 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI FLEEW ME LE+ PS D+T++FVNG WVG HR+P QL+ T+R LRR+ DI
Sbjct: 240 SEPISYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVETMRNLRRRGDI- 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L K HI L +Y+
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSETKGELKLHKEHIHKLINSEYDE 358
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
Y DTL+ T W LV G+VEY+D EEET MIAM+P
Sbjct: 359 YDE------------DTLDSAYT----WSSLVNDGIVEYVDAEEEETIMIAMTP 396
>gi|396941883|gb|AFN89659.1| RNA polymerase II, partial [Schwanniomyces occidentalis]
Length = 776
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/394 (54%), Positives = 278/394 (70%), Gaps = 42/394 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ TDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTXTDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRNLRRRGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN- 603
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K H+ L +Y+
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHVHKLLSSEYDE 358
Query: 604 ------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+Y W LV G+VEY+D EEET MIAM
Sbjct: 359 YDEDSESYTWSSLVNDGIVEYVDAEEEETIMIAM 392
>gi|396941863|gb|AFN89649.1| RNA polymerase II, partial [Hyphopichia burtonii]
Length = 783
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/396 (54%), Positives = 278/396 (70%), Gaps = 44/396 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI FLEEW ME LE+ PS D+T++FVNG WVG HR+P QL+ T+R LRR+ D I
Sbjct: 240 SEPISYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVDTMRNLRRRGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K H+ L +Y+
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSETKGDLKLQKEHVHKLINSEYDE 358
Query: 605 YG---------WQVLVQSGVVEYIDTLEEETTMIAM 631
Y W LV G+VEY+D EEET MIAM
Sbjct: 359 YDEDSADSAYTWSSLVSDGIVEYVDAEEEETIMIAM 394
>gi|157814102|gb|ABV81796.1| putative DNA-directed RNA polymerase II subunit 2 [Cydia pomonella]
Length = 236
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/218 (94%), Positives = 213/218 (97%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG+LLLKK+H
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID+LKERDYNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDSLKERDYNNYGWQNLVASGVVEYIDTLEEETVMIAM 218
>gi|157814100|gb|ABV81795.1| putative DNA-directed RNA polymerase II subunit 2 [Antheraea
paukstadtorum]
Length = 236
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/218 (94%), Positives = 213/218 (97%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG+LLLKK+H
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGALLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID+LKERDYNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDHLKERDYNNYGWQNLVASGVVEYIDTLEEETVMIAM 218
>gi|396941855|gb|AFN89645.1| RNA polymerase II, partial [Aciculoconidium aculeatum]
Length = 763
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/388 (54%), Positives = 277/388 (71%), Gaps = 38/388 (9%)
Query: 280 MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCET 339
M+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET
Sbjct: 1 MLKPCVEEGFVIQEREVALDFIGRRGVM-GIRREKRIQYAKDILQKELLPNITQEEGFET 59
Query: 340 KKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYA 373
+KA+FLGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 60 RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYM 119
Query: 374 QKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSL 433
Q+ ++ K+FNL LA+K++ +TDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S+L
Sbjct: 120 QRCVENDKEFNLTLAVKSQTVTDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTL 179
Query: 434 SHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPS 493
SHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 SHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTASE 239
Query: 494 PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS 553
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P QL+ T+R LRR+ D +
Sbjct: 240 PILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAQLVDTMRNLRRRGD-VSP 298
Query: 554 EVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN--- 603
EVSIIRDIR++E +I TDAGR+ RPL + ++ G + L+K ++ L +Y+
Sbjct: 299 EVSIIRDIREKEFKIFTDAGRVYRPLFVVDDDIESITKGDIKLEKEQVNKLLNSEYDEYE 358
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W LV GV+EY+D EEET MIAM
Sbjct: 359 EYTWSSLVGEGVIEYVDAEEEETIMIAM 386
>gi|262302273|gb|ACY43729.1| RNA polymerase subunit 1 [Acheta domesticus]
Length = 236
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/218 (94%), Positives = 213/218 (97%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG+LLLKKRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNN+GWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKEREYNNFGWQVLVASGVVEYIDTLEEETVMIAM 218
>gi|358030894|dbj|BAL15356.1| RNA polymerase II second largest subunit, partial [Olpidium
bornovanus]
Length = 895
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/473 (47%), Positives = 302/473 (63%), Gaps = 49/473 (10%)
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K + GQ I LPY+ Q+IP+ IVFRALG + IL+ + YD +D +MME++KPS++E
Sbjct: 9 KVSSGQYIRTSLPYVNQDIPVXIVFRALGVLPXAHILQQVCYDMEDDQMMELLKPSIEEG 68
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
IQ+Q VAL+FIG RG+ G+T+E+R+KYA EI KE LPHV K++F GYM
Sbjct: 69 HSIQDQEVALDFIGKRGSAVGLTREKRVKYAMEIFVKEFLPHVDDYVTSAAHKSFFFGYM 128
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
+HRL +A+L RRELDDRDHY + + +K +D+ ++
Sbjct: 129 IHRLCMAALERRELDDRDHYGKKRMDLAGPLISGLFRNLFRKMTTDIGAHLRKCMDQNRE 188
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K+ IT+GL+YSLATGNWGDQ++A Q+RAGVSQVLNR TFAS+LSHLRR N+P
Sbjct: 189 FNLTLAVKSNHITNGLKYSLATGNWGDQQRAMQSRAGVSQVLNRYTFASTLSHLRRCNTP 248
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL++++Y+SVG++ + + EE
Sbjct: 249 IGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSMLSYVSVGAKSHVVRQIFEES 308
Query: 503 SMENLEEI---APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
++ L+E D K+F+NG WVG+ DP +L+ LR L+ Q D E+S +R
Sbjct: 309 GVQYLDESDQEMEQLRLDTIKVFLNGGWVGMISDPTKLLQALRGLKCQPDRNF-EISFVR 367
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKE--------------RDYNNY 605
D+RDREIR+ TD GR RPL + + G L++KK HI L Y +
Sbjct: 368 DVRDREIRVFTDHGRCMRPLFVVKEGRLVIKKSHIRALTNPVRLSIFWRKLSIXSAYCVH 427
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
G + + + + E D E+ W LV + ++EY+D EEET MI MSP
Sbjct: 428 GVDISMSAYIFECQD-FEQRWK----WSDLVMTSIMEYVDAEEEETIMICMSP 475
>gi|157814104|gb|ABV81797.1| putative DNA-directed RNA polymerase II subunit 2 [Prodoxus
quinquepunctellus]
Length = 236
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/218 (94%), Positives = 212/218 (97%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI E G+LLLKK+H
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEKGTLLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
IDNLKERDYNNYGWQ LV +GVVEYIDTLEEET MIAM
Sbjct: 181 IDNLKERDYNNYGWQNLVANGVVEYIDTLEEETVMIAM 218
>gi|45545325|gb|AAS67510.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Dermatocarpon reticulatum]
Length = 907
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/532 (44%), Positives = 325/532 (61%), Gaps = 52/532 (9%)
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S + + EIRS ++ SR S V + R +
Sbjct: 1 SEKVLIAQERSAGNIVQVFKKAAPSPFTHIAEIRSSVDRGSRMLSQCTVKLY-RQVDGPE 59
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
++ I I LPY+KQ+IP+++VFRAL V+D DILE I +D D EMM+++ SL E
Sbjct: 60 QTKIPNPIRIQLPYVKQDIPLVVVFRALDIVSDADILEKICFDQSDKEMMDLLMGSLQEG 119
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVG--VSDFCETKKAYFLG 346
IQ + A ++I RG P + R K+ +ILQKE LPH+G S+ +++KA+FLG
Sbjct: 120 QPIQSADTARDYIARRGNNPNLKFAERQKHTTDILQKEFLPHIGQEPSNSSQSRKAFFLG 179
Query: 347 YMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRG 380
YMV+R+L +LGR E DDRDH + Y QK ++
Sbjct: 180 YMVNRMLKCALGRSEPDDRDHLGKKRLDLAGPLMANLFRLQFQKVVRDFSRYMQKQVESD 239
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
++ NL++ +K+ IIT+GL+YSLATGNWGDQKK +QA+AGVSQVL+R TFAS+LSHLRR N
Sbjct: 240 REINLKVGLKSNIITNGLKYSLATGNWGDQKKVNQAKAGVSQVLSRYTFASTLSHLRRTN 299
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGK+AKPRQLHNT WG +CPAETPEG A GLVKNLALM ++ P+++++
Sbjct: 300 APIGRDGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLALMTMVTNSHNTEPLVDYIL 359
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIH-RDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
E +E+LEE P ATK+F+NG W + +DP+ L+ ++LRR D + ++SI+
Sbjct: 360 EQDVESLEEWEPRLSPQATKVFLNGVWFAVVIKDPKHLVNRFKELRR-TDQLDPQISIVW 418
Query: 560 DIRDREIRIHTDAGRICRPLLIAE-------NGSLLLKKRHIDNLKERDYNN-------- 604
DIRD+E RI DAGRI RPL + E G+L+L K HI L Y
Sbjct: 419 DIRDKEFRISGDAGRIIRPLFVVERDPSKDNEGNLVLNKNHIQRLDNTVYYTEAQRPIEQ 478
Query: 605 -----YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEET 651
+GW+ L++ GVVEY+D EEET MI M + + +++ EET
Sbjct: 479 WQEPPFGWKDLLKEGVVEYLDAEEEETAMIIMTPEDLNTSNAKHMGRTTEET 530
>gi|262302359|gb|ACY43772.1| RNA polymerase subunit 1 [Periplaneta americana]
Length = 236
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/218 (94%), Positives = 212/218 (97%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI E G+LLLKKRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGNLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 218
>gi|396941903|gb|AFN89669.1| RNA polymerase II, partial [Cephaloascus fragrans]
Length = 789
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/407 (53%), Positives = 279/407 (68%), Gaps = 55/407 (13%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPHITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ KDFNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 120 YMQRCVETDKDFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVGS
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSN 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FLEEW ME LE+ P ++T++FVNG WVG HR+P L+ T+R LRR D I
Sbjct: 240 SEPIIYFLEEWGMEPLEDYVPHLSPNSTRVFVNGVWVGTHREPATLVETMRNLRRSGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHI---------- 594
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K HI
Sbjct: 299 EPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESEHKGELKLRKEHIRKLVNQEEDD 358
Query: 595 ----------DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N + R+ +YGW L++ G++EY+D EEET MIAM
Sbjct: 359 ADFDDELDEDGNPRSREDRSYGWDKLLREGLIEYVDAEEEETIMIAM 405
>gi|262302293|gb|ACY43739.1| RNA polymerase subunit 1 [Ctenolepisma lineata]
Length = 236
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/218 (94%), Positives = 211/218 (96%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
H ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG LLLKKRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LK+R+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKDREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 218
>gi|396941833|gb|AFN89634.1| RNA polymerase II, partial [Lachancea thermotolerans]
Length = 773
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/396 (53%), Positives = 275/396 (69%), Gaps = 44/396 (11%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E
Sbjct: 1 EMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
++KA+FLGYM++RLLL +L R++ DDRDH+ + +
Sbjct: 61 SRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRF 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ KDFNL+LA+K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 121 MQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P
Sbjct: 181 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PI+ FL EW ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D +
Sbjct: 241 LPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGD-VT 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYN--- 603
SEVSI+RDIR++E++I TDAGR+ RPL I + L L+K HI L +Y
Sbjct: 300 SEVSIVRDIREKELKIFTDAGRVYRPLFIVDENEETGVKELKLRKGHIRKLMMTEYQDIE 359
Query: 604 --------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
NY W L+ G+VEYID EEET +IAM
Sbjct: 360 GGFEEEDINYTWSSLLNEGLVEYIDAEEEETILIAM 395
>gi|396941889|gb|AFN89662.1| RNA polymerase II, partial [Scheffersomyces spartinae]
Length = 758
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/398 (54%), Positives = 283/398 (71%), Gaps = 40/398 (10%)
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYM
Sbjct: 1 FVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYM 59
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
V+RLLL +L R+E DDRDH+ + Y Q+ ++ K
Sbjct: 60 VNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKV 119
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 120 FNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 179
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FLEEW
Sbjct: 180 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILYFLEEW 239
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ PS+ D+T++FVNG WVG HR+P L+ T+R LRR+ D I EVSIIRDIR
Sbjct: 240 GMEPLEDYVPSSSPDSTRVFVNGVWVGTHREPAHLVETMRNLRRRGD-ISPEVSIIRDIR 298
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN---NYGWQVLVQ 612
++E +I TDAGR+ RPL + ++ G+L L+K HI +L +Y+ YGW LV
Sbjct: 299 EKEFKIFTDAGRVYRPLFVVDDDPESETKGNLKLQKEHIHSLLNSEYDENEKYGWTELVN 358
Query: 613 SGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEE 650
+GVVEY+D EEET MIAM+ ++S +++ EEE
Sbjct: 359 AGVVEYVDAEEEETIMIAMFPEDLES--TANVESNEEE 394
>gi|326681312|ref|XP_003201781.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
partial [Danio rerio]
Length = 245
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/225 (88%), Positives = 213/225 (94%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ GEE
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQ 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+MMARGGQ
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGGQ 245
>gi|396941837|gb|AFN89636.1| RNA polymerase II, partial [Eremothecium cymbalariae]
Length = 776
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/416 (51%), Positives = 283/416 (68%), Gaps = 45/416 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R++ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
+ Q+ ++ KDFNL+LA+K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 FMQRSVEEAKDFNLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ FL EW ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D I
Sbjct: 241 PVPIITFLNEWGMEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAE-------NGSLLLKKRHIDNLKERDYN- 603
+EVSI+RDIR++E++I TDAGR+ RPL + + L ++K HI L +Y
Sbjct: 300 TAEVSIVRDIREKELKIFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHIRKLMLTEYQD 359
Query: 604 ----------NYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEE 649
NY W L+ G+VEYID EEET +IAM Q + V + D +E
Sbjct: 360 IEGGFEEEDINYTWTSLLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQTADPSDE 415
>gi|396941859|gb|AFN89647.1| RNA polymerase II, partial [Metschnikowia agaves]
Length = 771
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/384 (55%), Positives = 271/384 (70%), Gaps = 43/384 (11%)
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ E++KA+FLGYM
Sbjct: 1 FVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEAGFESRKAFFLGYM 59
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
V+RLLL +L R+E DDRDH+ + Y Q+ ++ K+
Sbjct: 60 VNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTRDIYNYMQRCVENDKE 119
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL LA+K++ ITDGLRYSLATGNWG+Q+KA ARAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 120 FNLTLAVKSQTITDGLRYSLATGNWGEQRKAMSARAGVSQVLNRYTYSSTLSHLRRTNTP 179
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL FLEEW
Sbjct: 180 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSSEPILYFLEEW 239
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ PS D T++FVNG WVG HR+P QL+ T+R+LRR+ D I EVSIIRDIR
Sbjct: 240 GMEPLEDYVPSNAPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGD-ISPEVSIIRDIR 298
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY--------NNYGW 607
++E +I TDAGR+ RPL I ++ G L+L+K H+ L + Y N Y W
Sbjct: 299 EKEFKIFTDAGRVYRPLFIVDDDPESETKGELMLQKEHVHKLLDSAYDEYDDDNSNAYTW 358
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
LV GVVEY+D EEET MIAM
Sbjct: 359 SSLVNDGVVEYVDAEEEETIMIAM 382
>gi|396941831|gb|AFN89633.1| RNA polymerase II, partial [Vanderwaltozyma polyspora]
Length = 775
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/396 (53%), Positives = 274/396 (69%), Gaps = 43/396 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP +++ FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R++ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ DFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ FL EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I
Sbjct: 241 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN- 604
EVS+IRDIR++E++I TDAGR+ RPL I EN L ++K HI L +Y +
Sbjct: 300 NPEVSMIRDIREKELKIFTDAGRVYRPLFIVENDEQLGHKELKVRKGHIARLMATEYQDI 359
Query: 605 ---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W L+ G+VEYID EEET +IAM
Sbjct: 360 EGGFEDSEEYTWSSLLNEGLVEYIDAEEEETILIAM 395
>gi|157814074|gb|ABV81782.1| putative DNA-directed RNA polymerase II subunit 2 [Forficula
auricularia]
Length = 236
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/218 (94%), Positives = 211/218 (96%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
H ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG+LLLKK H
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKHH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER++NNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKEREHNNYGWQVLVASGVVEYIDTLEEETVMIAM 218
>gi|396941825|gb|AFN89630.1| RNA polymerase II, partial [Torulaspora delbrueckii]
Length = 773
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/396 (52%), Positives = 275/396 (69%), Gaps = 43/396 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP +++ FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R++ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ KDFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ FL EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I
Sbjct: 241 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYN-- 603
EVS++RDIR++E++I TDAGR+ RPL I E+ L ++K HI L +Y
Sbjct: 300 NPEVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIGKLMATEYQDI 359
Query: 604 --------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+Y W L+ G+VEYID EEET +I+M
Sbjct: 360 EGGFEDSEDYTWSSLLNEGLVEYIDAEEEETILISM 395
>gi|262302315|gb|ACY43750.1| RNA polymerase subunit 1 [Ephemerella inconstans]
Length = 236
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/218 (94%), Positives = 210/218 (96%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAILDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN +LLLKKRH
Sbjct: 121 PEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENNNLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LK+RDYNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKDRDYNNYGWQFLVSSGVVEYIDTLEEETVMIAM 218
>gi|396941809|gb|AFN89622.1| RNA polymerase II, partial [Saccharomycopsis capsularis]
Length = 773
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/407 (51%), Positives = 282/407 (69%), Gaps = 38/407 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KPS++EAFVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LPH+ +
Sbjct: 1 LEMLKPSIEEAFVIQEREVALDFIGRRGNVIGIRREKRIQYAKDILQKELLPHITRDEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV++LL+ +L R+E DDRDH+ +
Sbjct: 61 ESRKAFFLGYMVNKLLMCALERKEPDDRDHFGKKRLDLAGPLLAKLFRLLFRKLSRDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ +DFNL LAI+ ITDGLRYSLATGNWG+QKKA A+AGVSQVLNR T++S
Sbjct: 121 YMQRCVETNRDFNLSLAIRPSTITDGLRYSLATGNWGEQKKAMSAKAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHN+ WG++CPAETPEG A GLVKNL+LM ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMTCISVGSS 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
I+E+LEEW M+ LE+ P +T+IFVNG WVG+ +D + LR LRR+ DI
Sbjct: 241 SDAIVEYLEEWGMDPLEDYVPHKDTKSTRIFVNGVWVGVQKDASIIDEALRGLRRKGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLV 611
EVSI+R++R++E +I TDAGR+ RPL + E G L L+K+H+ L +
Sbjct: 300 NPEVSIVRNVREKEFKIFTDAGRVYRPLFVVEEGRLKLEKKHVSMLMD-----------T 348
Query: 612 QSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
Q+ ++ E++ T W LV +G++EYID EEETTMIAMSP
Sbjct: 349 QARADGLLEEDEDDQTENFTWSSLVNNGIIEYIDAEEEETTMIAMSP 395
>gi|396941853|gb|AFN89644.1| RNA polymerase II, partial [Kodamaea ohmeri]
Length = 766
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/383 (55%), Positives = 275/383 (71%), Gaps = 39/383 (10%)
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
+E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FL
Sbjct: 1 EEGFVIQEREVALDFIGRRGVM-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFL 59
Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
GYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 60 GYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYNYMQRCVEN 119
Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S+LSHLRR
Sbjct: 120 DKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRT 179
Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL FL
Sbjct: 180 NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPLEPILYFL 239
Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
EEW ME LE+ P D+T++FVNG W+G HR+P QL+ T+R LRR+ D I EVSIIR
Sbjct: 240 EEWGMEPLEDYVPLNSPDSTRVFVNGVWLGTHREPAQLVETMRNLRRRGD-ISPEVSIIR 298
Query: 560 DIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL----KERDYNNYGWQ 608
DIR++E +I TDAGR+ RPL I ++ G + L+K H++ L + +Y+ Y W
Sbjct: 299 DIREKEFKIFTDAGRVYRPLFIVDDDPDSPTKGDIKLEKEHVNKLLSSEYDDEYDGYTWS 358
Query: 609 VLVQSGVVEYIDTLEEETTMIAM 631
+LV GV+EY+D EEET MIAM
Sbjct: 359 LLVNDGVIEYVDAEEEETIMIAM 381
>gi|262302333|gb|ACY43759.1| RNA polymerase subunit 1 [Metajapyx subterraneus]
Length = 236
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/218 (93%), Positives = 210/218 (96%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI E G LLLKKRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEGGRLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNYGWQ LV SGVVEYIDTLEEET MI+M
Sbjct: 181 IDMLKEREYNNYGWQDLVASGVVEYIDTLEEETVMISM 218
>gi|396941789|gb|AFN89612.1| RNA polymerase II, partial [Barnettozyma populi]
Length = 775
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/412 (52%), Positives = 286/412 (69%), Gaps = 38/412 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQ++ VAL++IG RG G+ KE+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDREVALDYIGRRGNALGIRKEKRIQYAKDILQKEFLPHITQREGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 61 ESRKAFFLGYMVNRLLLCALDRKEQDDRDHFGKKRLDLAGPLMTNLFRILFRKLTRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ G DFNL+LA+K IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRSVETGVDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG++
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTE 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
+LEFL+EW +E LEE P D T+IFVNG W GIH DP +L+ T+R +RR+ D+
Sbjct: 241 SQEVLEFLDEWGIEPLEEYMPHQRPDVTRIFVNGVWHGIHDDPARLVETMRSMRRKGDL- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYNNY 605
E+SIIRDIR++E+++ TDAGR+ RPL I + L LKK ++ L RD
Sbjct: 300 SPEISIIRDIREKELKVFTDAGRVYRPLFIVDENHETNSKDLALKKEDVERL--RDTEET 357
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
++ + E+ID E+ T + W+ L++SG+VEY+D EEET MIAMS
Sbjct: 358 IAEISEKKRNNEFID---EDQTDLYGWESLLRSGIVEYVDAEEEETIMIAMS 406
>gi|262302351|gb|ACY43768.1| RNA polymerase subunit 1 [Machiloides banksi]
Length = 236
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/218 (93%), Positives = 209/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG LLLKKRH
Sbjct: 121 PEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+D LKER+YNNYGWQ LV S VEYIDTLEEET MIAM
Sbjct: 181 VDMLKEREYNNYGWQDLVASSAVEYIDTLEEETVMIAM 218
>gi|396941829|gb|AFN89632.1| RNA polymerase II, partial [Kazachstania viticola]
Length = 771
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/396 (52%), Positives = 275/396 (69%), Gaps = 43/396 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP +++ FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R++ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ DFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ FL EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I
Sbjct: 241 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNN- 604
EVS+IRDIR++E++I TDAGR+ RPL I E+ L ++K HI+ L +Y +
Sbjct: 300 NPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHINKLMATEYQDI 359
Query: 605 ---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W L+ G+VEYID EEET +IAM
Sbjct: 360 EGGFEDSEEYTWTSLLNEGLVEYIDAEEEETILIAM 395
>gi|396941793|gb|AFN89614.1| RNA polymerase II, partial [Cyberlindnera americana]
Length = 763
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/398 (54%), Positives = 275/398 (69%), Gaps = 45/398 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ+ VAL+FIG RG G+ +E+RI+YAR+ILQKE LPH+ +
Sbjct: 1 LEMLKPCIEEAFVIQDTEVALDFIGRRGNGLGIRREKRIQYARDILQKEFLPHISQAQGM 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+ DDRDH+ +
Sbjct: 61 ETQKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLSNLFRILFRKLSNDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ G DFNL++A+K IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRSVETGADFNLKIAVKPTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTG 240
Query: 492 PSPILEFLEEWSMENLEEIAPS---AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
PIL FLEEW ME L E P+ + ATKIFVNG W G+H+D +L T+R LRR+
Sbjct: 241 SDPILWFLEEWGMEPLSEYKPTKDDSEGTATKIFVNGVWHGVHKDAAKLTETMRILRRRG 300
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDY 602
+ I +EVSIIRDIR++E R+ TDAGR+ RPL I E L LKK +++ L E +Y
Sbjct: 301 E-ISAEVSIIRDIREKEFRVFTDAGRVYRPLFIVEENHETGKKELALKKENVNKLLESEY 359
Query: 603 ---------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+YGW L+ +G+VEY+D EEET MIAM
Sbjct: 360 EAVDEETGEESYGWSSLLNNGIVEYVDAEEEETIMIAM 397
>gi|396941787|gb|AFN89611.1| RNA polymerase II, partial [Starmera amethionina]
Length = 770
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/392 (54%), Positives = 272/392 (69%), Gaps = 39/392 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ++ VAL++IG RG GV KE+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEAFVIQDREVALDYIGRRGNALGVKKEKRIQYAKDILQKEFLPHITQKEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV+RLLL +L R+ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ DFNL+LA+K IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRSVETDTDFNLKLAVKASTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSGISVGTL 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI FLEEW +E LE+ P D T++FVNG W GIHRDP L T+++LRR + I
Sbjct: 241 SDPIYYFLEEWGLEPLEDYTPHQNPDVTRVFVNGVWAGIHRDPATLTSTIKQLRRNGE-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS-----LLLKKRHIDNLKERDYNNYG 606
+EVSIIRDIR++E +I TDAGR+ RPL I E G L K + L E +Y++ G
Sbjct: 300 PAEVSIIRDIREQEFKIFTDAGRVYRPLFIVEEGQNGEKELAYTKAIANRLLETEYDSLG 359
Query: 607 -------WQVLVQSGVVEYIDTLEEETTMIAM 631
W+ L+ GVVEYID EEETTMIAM
Sbjct: 360 PDEEPCTWETLLNGGVVEYIDAEEEETTMIAM 391
>gi|396941827|gb|AFN89631.1| RNA polymerase II, partial [Naumovozyma dairenensis]
Length = 775
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/413 (51%), Positives = 283/413 (68%), Gaps = 48/413 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP +++ FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R++ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ DFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ FL EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI
Sbjct: 241 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDTLRTLRRKGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNNY 605
EVS+IRDIR++E++I TDAGR+ RPL I E+ L ++K HI+ L +Y +
Sbjct: 300 NPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHINKLMATEYQD- 358
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
++ G + +EE T W L+ G+VEYID EEET +IAM P
Sbjct: 359 -----IEGG----FEDVEEYT-----WTSLLNEGLVEYIDAEEEETILIAMQP 397
>gi|396941819|gb|AFN89627.1| RNA polymerase II, partial [Zygotorulaspora mrakii]
Length = 771
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/394 (52%), Positives = 273/394 (69%), Gaps = 43/394 (10%)
Query: 280 MVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCET 339
M+KP +++ FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ + E+
Sbjct: 1 MLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGFES 60
Query: 340 KKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYA 373
+KA+FLGYM++RLLL +L R++ DDRDH+ + Y
Sbjct: 61 RKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYM 120
Query: 374 QKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSL 433
Q+ ++ KDFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+L
Sbjct: 121 QRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 180
Query: 434 SHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPS 493
SHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P
Sbjct: 181 SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 240
Query: 494 PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS 553
PI+ FL EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I
Sbjct: 241 PIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INP 299
Query: 554 EVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYN---- 603
EVS++RDIR++E++I TDAGR+ RPL I E+ L ++K HI L +Y
Sbjct: 300 EVSMVRDIREKELKIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHISKLMATEYQDIEG 359
Query: 604 ------NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+Y W L+ G+VEYID EEET +I+M
Sbjct: 360 GFEDSEDYTWSSLLNEGLVEYIDAEEEETILISM 393
>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
Length = 1029
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 238/511 (46%), Positives = 312/511 (61%), Gaps = 53/511 (10%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR--GGQS 226
SEKVLIAQE+ A N V VF + + + EIRS ++ +R S V + R G +
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPEG 60
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
K I I LPY+KQ+IP++IVFRAL V+D DILE I +D D EMM+M+ SL
Sbjct: 61 TK---IDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQ 117
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E IQ ++A +FI RG P + R K+A +ILQKE LPH+G +KA+FLG
Sbjct: 118 EGQPIQGADLARDFIARRGNVPSLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLG 177
Query: 347 YMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRG 380
YMV+RLL +LGR E DDRDH + Y QK ++ G
Sbjct: 178 YMVNRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESG 237
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
+ N+ K IIT GL+YSLATGNWGDQKK +A+AGVSQVL+R TF+S+LSHLRR N
Sbjct: 238 QPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFSSTLSHLRRTN 297
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGR+GK+AKPRQLHNT WG +CPAETPEG A GLVKNL+LM+ ++ + P+L ++
Sbjct: 298 APIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETGPLLNYVM 357
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVG-IHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
+E LE+ P ATKIFV+G W + RDP++L+ LRKLRR+ + S VS++
Sbjct: 358 TKHVEALEDWEPRLNPRATKIFVDGVWFAVVLRDPKRLVDDLRKLRRK-GVFDSHVSLVW 416
Query: 560 DIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY---------- 602
DIR++E +I D+GRI RPL + E G+L+L K HI+ L + Y
Sbjct: 417 DIREKEFKISGDSGRIVRPLFVVETDRSSENLGNLVLNKEHINKLDQTAYLKESGFQWTD 476
Query: 603 --NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW L++SGVVEY+D EEET MI M
Sbjct: 477 EIRPYGWTDLLESGVVEYLDAEEEETAMICM 507
>gi|396941941|gb|AFN89687.1| RNA polymerase II, partial [Phaffomyces opuntiae]
Length = 771
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/394 (53%), Positives = 276/394 (70%), Gaps = 41/394 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E VIQ++ VAL++IG RG G+ KE+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGXVIQDREVALDYIGRRGNALGIRKEKRIQYAKDILQKEFLPHITQREGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R+ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRVLFKKLTRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
+ Q+ ++ G DFNL+LA+K IT GL YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 FMQRSVETGVDFNLKLAVKATTITSGLXYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTG 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LEE P D T+IFVNG W GIH+DP +L+ T+R LRR+ + I
Sbjct: 241 SDPILYFLEEWGMEPLEEYLPHQNPDVTRIFVNGVWHGIHKDPAKLVETMRSLRRRGE-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLI----AENGS--LLLKKRHIDNLKERDYNN- 604
EVSIIRDIR++E +I TDAGR+ RPL + AE G+ L LKK H++ + ++ +
Sbjct: 300 SPEVSIIRDIREKEFKIFTDAGRVYRPLFVVEENAETGTKELALKKEHVERVAASEFEDA 359
Query: 605 -------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW L+ +G+VEY+D EEET MIAM
Sbjct: 360 EETGEEPFGWNALLSNGIVEYVDAEEEETIMIAM 393
>gi|396941935|gb|AFN89684.1| RNA polymerase II, partial [Starmerella bombicola]
Length = 774
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/389 (53%), Positives = 272/389 (69%), Gaps = 36/389 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F +Q++ VAL++IG RG G++K++RI+YAR+ILQKE+LPH+ +
Sbjct: 1 VEMLKPCIEEGFFVQDRQVALDYIGRRGNVTGISKDKRIRYARDILQKELLPHITQQEGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRM----------- 371
E++KAYF GYMVHRLLL +L RRE DDRDH+ RM
Sbjct: 61 ESRKAYFFGYMVHRLLLVALDRREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK I+ K+FNL LA+K+ IT+GL+YSLATGNWGDQK+A +AGVSQVLNR TF+S
Sbjct: 121 YMQKCIESNKEFNLTLAVKSNTITNGLKYSLATGNWGDQKRAMSTKAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIG+DGK+AKP QLHNT WG++CPAETPEG A GLVKNL+LM ISVGS
Sbjct: 181 TLSHLRRTNTPIGKDGKIAKPXQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI+ FL+EW ME LE+ +P + T++FVNG WVG+H +P L T++ LRR+ D I
Sbjct: 241 SEPIIFFLQEWGMEPLEDFSPHESTNVTRVFVNGVWVGVHHEPTLLDQTMKNLRRRGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS-LLLKKRHI--------DNLKERDY 602
E++I+RDIR++E +I TDAGR+ RPL + ENG L L K + L
Sbjct: 300 SPEITIVRDIREQEFKILTDAGRVYRPLFVVENGGELKLTKDQVYQLLNTEESGLTPESP 359
Query: 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ +GW LV +G+VEYID EEETTMIAM
Sbjct: 360 DYFGWSNLVANGIVEYIDGEEEETTMIAM 388
>gi|262302371|gb|ACY43778.1| RNA polymerase subunit 1 [Pedetontus saltator]
Length = 236
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/218 (93%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMEN EEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENXEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG LLLKKRH
Sbjct: 121 PEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+D LKER+YNNYGWQ LV S VEYIDTLEEET MIAM
Sbjct: 181 VDMLKEREYNNYGWQDLVASSAVEYIDTLEEETVMIAM 218
>gi|89274918|gb|ABD65900.1| RNA polymerase II second largest subunit, partial [Scytinostroma
alutum]
Length = 434
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/366 (56%), Positives = 270/366 (73%), Gaps = 32/366 (8%)
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
+AL+FIG RG G++++RRI+YA+EILQKEMLPHV +S+ E++KAYF GYMVHRLLLA
Sbjct: 1 IALDFIGNRGTTTGLSRDRRIRYAQEILQKEMLPHVSMSEGSESRKAYFFGYMVHRLLLA 60
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
++ RRELDDRDH+ V Y QK ++ K+FN LAI
Sbjct: 61 AMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHKEFNFNLAI 120
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K IT+GL+YSLATGNWGDQKKA A+AGVSQVLNR T+ S+LSHLRR N+P+GR+GK+
Sbjct: 121 KHTTITNGLKYSLATGNWGDQKKAMSAKAGVSQVLNRYTYVSTLSHLRRCNTPLGREGKI 180
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHN WGM+CPAETPEG A GLVKNL+LMA ISVGS I++FL+EW +E+LEE
Sbjct: 181 AKPRQLHNHHWGMVCPAETPEGQACGLVKNLSLMACISVGSTSGTIVDFLDEWGLESLEE 240
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
A S+ TK+FVNG WVG+HRDP L+ TL+KLRR+ D + EVSI+RDIR+RE+RI+
Sbjct: 241 NAHSSTL-TTKVFVNGVWVGVHRDPTNLISTLKKLRRK-DDVHPEVSIVRDIRERELRIY 298
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKE---RDYN-NYGWQVLVQSGVVEYIDTLEEE 625
TD GR+CRPL + E+G L ++K+H+ + + D N ++ W L+++GV+E +D EEE
Sbjct: 299 TDPGRVCRPLFVVEDGQLAIEKKHVQWVSQGHTEDPNESFRWSQLIKTGVIEMLDAEEEE 358
Query: 626 TTMIAM 631
T MI+M
Sbjct: 359 TVMISM 364
>gi|6606115|gb|AAF19070.1|AF107798_1 DNA-dependent RNA polymerase II RPB140 [Capronia pilosella]
Length = 937
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/511 (46%), Positives = 310/511 (60%), Gaps = 53/511 (10%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR--GGQS 226
SEKVLIAQE+ A N V VF + + + EIRS ++ +R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
K I I LPY+KQ+IP++IVFRAL V+D DILE I +D D EMM+M+ SL
Sbjct: 61 TK---IDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQ 117
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E IQ ++A +FI RG P + R K+A +ILQKE LPH+G +KA+FLG
Sbjct: 118 EGQAIQGADLARDFIARRGNVPTLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLG 177
Query: 347 YMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRG 380
YMV+RLL +LGR E DDRDH + Y QK ++
Sbjct: 178 YMVNRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESN 237
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
+ N+ K IIT GL+YSLATGNWGDQKK +A+AGVSQVL+R TFAS+LSHLRR N
Sbjct: 238 QPINIMAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTN 297
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGR+GK+AKPRQLHNT WG +CPAETPEG A GLVKNL+LM+ ++ + P+L ++
Sbjct: 298 APIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNTYETGPLLNYIL 357
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVG-IHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
+E LE+ P ATK+FV+G W + RDP++L+ LRKLRR+ + S+VS++
Sbjct: 358 TKHVEALEDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVDDLRKLRRK-GVFDSQVSLVW 416
Query: 560 DIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY---------- 602
DIRD+E +I D+GRI RPL I E G+L+L K HI L + Y
Sbjct: 417 DIRDKEFKISGDSGRIVRPLFIVETDRASENLGNLVLNKDHISKLDQTAYLKEGGFQWTD 476
Query: 603 --NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW L++SGVVEY+D EEET MI M
Sbjct: 477 EIRPYGWNDLLESGVVEYLDAEEEETAMIIM 507
>gi|157814092|gb|ABV81791.1| putative DNA-directed RNA polymerase II subunit 2 [Speleonectes
tulumensis]
Length = 236
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/218 (93%), Positives = 209/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP AIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPLAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI ENG LLLKKRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNY WQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKEREYNNYSWQDLVASGVVEYIDTLEEETVMIAM 218
>gi|396941911|gb|AFN89673.1| RNA polymerase II, partial [Pachysolen tannophilus]
Length = 792
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/402 (52%), Positives = 274/402 (68%), Gaps = 49/402 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ++ AL+FIG RG G+ +E+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEAFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILQKEFLPHITQDEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 61 ETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ +DFNL LA+++ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQKCVETNRDFNLTLAVRSNTITAGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
IL +LEEW ME +E+ P +A +IFVNG WVG HR+P L ++ LRRQ D I
Sbjct: 241 SDAILLYLEEWGMEPVEDFVPHDSPEAVRIFVNGVWVGTHREPADLTKAIKDLRRQGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL----KER 600
EVSI+RDIR++E +I TDAGR+ RPL + E+ G L L+K H++ L E
Sbjct: 300 SPEVSIVRDIREKEFKIFTDAGRVYRPLFVVEDDENSEHKGELKLRKSHVNKLLNPVDED 359
Query: 601 DYNN-----------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
DY YGW LV +GV+EY+D EEET MIAM
Sbjct: 360 DYMENGDEEEHEGAIYGWSSLVNNGVIEYVDAEEEETIMIAM 401
>gi|396941791|gb|AFN89613.1| RNA polymerase II, partial [Wickerhamomyces canadensis]
Length = 780
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/413 (53%), Positives = 282/413 (68%), Gaps = 40/413 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQ++ VAL++IG RG G+ +E+RI+YA++IL KE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDREVALDYIGRRGNALGIRREKRIQYAKDILTKEFLPHITQREGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV+RLLL +L R+ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMVNRLLLCALERKGQDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ DFNL+LA+K IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRSVETSTDFNLKLAVKATTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTT 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ P +ATKIFVNG W GIHR P +L+ +LR++RR+ +I
Sbjct: 241 SDPILLFLEEWGMEQLEDFVPHESPEATKIFVNGVWHGIHRQPAKLVESLREIRRRGEI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIA----ENGS--LLLKKRHIDNLKERDYNNY 605
E+SIIRDIR+RE+R+ TDAGR+ RPL + E G+ L L K HI L E +
Sbjct: 300 SPEISIIRDIRERELRVFTDAGRVYRPLFVVKDNEETGAKELALDKTHIQKLAETEARQ- 358
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
Q L + Y + E+ T W L+ S VVEYID EEETT+IAMSP
Sbjct: 359 --QELAEGEDEAYNEDKPEDFT----WSSLLSSNVVEYIDAEEEETTLIAMSP 405
>gi|262302349|gb|ACY43767.1| RNA polymerase subunit 1 [Hexagenia limbata]
Length = 236
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/218 (93%), Positives = 210/218 (96%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAILDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG+LLLK++H
Sbjct: 121 PEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKRKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LK R+Y NYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKGREYTNYGWQVLVASGVVEYIDTLEEETVMIAM 218
>gi|262302331|gb|ACY43758.1| RNA polymerase subunit 1 [Ischnura verticalis]
Length = 233
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/215 (94%), Positives = 209/215 (97%)
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL
Sbjct: 1 RAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 60
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DATKIFVNGCWVGIHRDPEQ
Sbjct: 61 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIDDATKIFVNGCWVGIHRDPEQ 120
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
LM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI ENG+LLLKKRHI+
Sbjct: 121 LMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIEM 180
Query: 597 LKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 LKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 215
>gi|396941823|gb|AFN89629.1| RNA polymerase II, partial [Saccharomyces cerevisiae]
Length = 770
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/413 (51%), Positives = 282/413 (68%), Gaps = 48/413 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP +++ FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R++ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ DFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ FL EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI
Sbjct: 241 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNNY 605
EVS+IRDIR++E++I TDAGR+ RPL I E+ L ++K HI L +Y +
Sbjct: 300 NPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD- 358
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
++ G + +EE T W L+ G+VEYID EEE+ +IAM P
Sbjct: 359 -----IEGG----FEDVEEYT-----WSSLLNEGLVEYIDAEEEESILIAMQP 397
>gi|6606111|gb|AAF19068.1|AF107796_1 DNA-dependent RNA polymerase II RPB140 [Exophiala jeanselmei]
Length = 937
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 239/519 (46%), Positives = 318/519 (61%), Gaps = 54/519 (10%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR--GGQS 226
SEKVLIAQE+ A N V VF + + + EIRS ++ +R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
K I I LPY+KQ+IP++IVFRAL V+D DILE I +D D EM++M+ SL
Sbjct: 61 TK---IDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQ 117
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E IQ ++A +FI RG P + R K+A +ILQKE LPH+G TKKA+FLG
Sbjct: 118 EGQPIQSADLARDFIARRGNIPTLKSHERQKHAIDILQKEFLPHIGQGPDVATKKAFFLG 177
Query: 347 YMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRG 380
YMV+RLL A+LGR E DDRDH + Y QK ++ G
Sbjct: 178 YMVNRLLKAALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAG 237
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
+ ++ K IIT GL+YSLATGNWGDQKK +A+AGVSQVL+R TFAS+LSHLRR N
Sbjct: 238 QPISIHAGFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTN 297
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGR+GK+AKPRQLHNT WG +CPAETPEG A GLVKNL+LM+ ++ + P+ ++
Sbjct: 298 APIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETEPLRAYVL 357
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVG-IHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
++ +EE P ATKIF++G W + RDP++L+ LR+LRRQ ++VS++
Sbjct: 358 NKHVDAIEEWEPRLNPQATKIFIDGVWFAVVLRDPKRLVDDLRRLRRQ-GTFDAQVSLVW 416
Query: 560 DIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY---------- 602
DIR++E RI D+GRI RPL + E G+L+L K HI+ L + +Y
Sbjct: 417 DIREKEFRISGDSGRIIRPLFVVETDKASENVGNLVLNKEHINKLDQTNYLKESGYQFND 476
Query: 603 --NNYGWQVLVQSGVVEYIDTLEEETTMIAMW-QVLVQS 638
+ YGW L+++GVVEY+D EEET MI M +VL S
Sbjct: 477 EVSAYGWDDLLKAGVVEYLDAEEEETAMIVMTPEVLADS 515
>gi|396941933|gb|AFN89683.1| RNA polymerase II, partial [Wickerhamiella domercqiae]
Length = 781
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/391 (53%), Positives = 277/391 (70%), Gaps = 40/391 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+E +KP ++E F +Q++ VAL+FIG RG+ G++K++RI+YAR+ILQKE+LPH+ +
Sbjct: 1 LEALKPCVEEGFFVQDRQVALDFIGRRGSVTGISKDKRIRYARDILQKELLPHITQQEGY 60
Query: 338 ETKKAYFLGYMVHRLLLASL-----------GRRELD-----------------DRDHYV 369
ET+KA+FLGYMVHR+LL +L G++ LD RD +
Sbjct: 61 ETRKAFFLGYMVHRMLLVALDRRDQDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDIF- 119
Query: 370 RMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 429
Y QK ++ KDFN+ LA+K+ IT+GL+YSLATGNWGDQK+A ++AGVSQVLNR T+
Sbjct: 120 -RYMQKCVEGNKDFNVTLAVKSNTITNGLKYSLATGNWGDQKRAMSSKAGVSQVLNRYTY 178
Query: 430 ASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVG 489
+S+LSHLRR N+PIG+DGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM +SVG
Sbjct: 179 SSTLSHLRRTNTPIGKDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGVSVG 238
Query: 490 SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMD 549
S PI+ FLEEW ME LE+ P A +AT++FVNG W+G+HR+P L+ T+R LRR+ D
Sbjct: 239 SPSDPIIYFLEEWGMEPLEDFVPHANNNATRVFVNGVWIGVHREPTLLVETMRNLRRRGD 298
Query: 550 IIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS-LLLKKRHIDNLKERDYNN---- 604
I E++I+RDIR++E +I TDAGR+ RPL I +NG+ L L K H+D L D N
Sbjct: 299 -ISPEITIVRDIREKEFKILTDAGRVYRPLFIVQNGTDLKLTKDHVDRLLYTDENALPPD 357
Query: 605 ----YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ W LVQ G+VEYID EEET MIAM
Sbjct: 358 SPDYFSWSQLVQQGIVEYIDGEEEETVMIAM 388
>gi|157814090|gb|ABV81790.1| putative DNA-directed RNA polymerase II subunit 2 [Podura aquatica]
Length = 236
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/218 (92%), Positives = 209/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
H ARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HTARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI ENG LLLKK+H
Sbjct: 121 PEQLMTTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNYGWQ LV GVVEYIDTLEEE+ MIAM
Sbjct: 181 IDMLKEREYNNYGWQDLVARGVVEYIDTLEEESAMIAM 218
>gi|262302385|gb|ACY43785.1| RNA polymerase subunit 1 [Tomocerus sp. 'Tom2']
Length = 236
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/218 (92%), Positives = 209/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI E G LLL+KRH
Sbjct: 121 PEQLMSTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEGGRLLLRKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNYGWQ LV GVVEYIDT+EEET MIAM
Sbjct: 181 IDMLKEREYNNYGWQDLVARGVVEYIDTMEEETVMIAM 218
>gi|396941867|gb|AFN89651.1| RNA polymerase II, partial [Wickerhamia fluorescens]
Length = 782
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/395 (53%), Positives = 275/395 (69%), Gaps = 43/395 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ +
Sbjct: 1 LEMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGF 59
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 60 ESRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLTKDIYN 119
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ +TDGLRYSLATG WG+QK A +RA VSQVLNR T++S
Sbjct: 120 YMQRCVENDKEFNLTLAVKSQTVTDGLRYSLATGXWGEQKNAMSSRAXVSQVLNRYTYSS 179
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 180 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 239
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 240 SEPILYFLEEWGMEPLEDYVPSNAPDSTRVFVNGVWVGTHREPAHLVDTIRNLRRRGD-I 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL------- 597
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L L+K + +
Sbjct: 299 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEQVHKILNSEYDE 358
Query: 598 -KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ D N+Y W LV GVVEY+D EEET MIAM
Sbjct: 359 YDDDDMNHYNWSSLVSDGVVEYVDAEEEETIMIAM 393
>gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Aureobasidium pullulans]
Length = 937
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 237/511 (46%), Positives = 315/511 (61%), Gaps = 53/511 (10%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR--GGQS 226
SEKVLIAQE+ A N V VF + + + EIRS ++ +R S V + R G
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGARMMSQCTVKLFRRVDGPDG 60
Query: 227 LKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
K I I LPY+KQ+IP++IVFRAL V+D DILE I +D D EM++M+ SL
Sbjct: 61 TK---IDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQ 117
Query: 287 EAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
E IQ ++A +FI RG P + R K+A +ILQKE LPH+G +KA+FLG
Sbjct: 118 EGQPIQGADLARDFIARRGNIPTLKSHERQKHAMDILQKEFLPHIGQGPDVAARKAFFLG 177
Query: 347 YMVHRLLLASLGRRELDDRDHYVRM--------------------------YAQKFIDRG 380
YMV+RLL +LGR E DDRDH + Y QK ++ G
Sbjct: 178 YMVNRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAG 237
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
+ N+ K I+T GL+YSLATGNWGDQKK +A+AGVSQVL+R TFAS+LSHLRR N
Sbjct: 238 QAINIHAGFKHPIVTSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTN 297
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGR+GK+AKPRQLHNT WG +CPAETPEG A GLVKNL+LM+ ++ + P++ ++
Sbjct: 298 APIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETLPLMNYVL 357
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVG-IHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
+E LE+ P ATK+FV+G W + RDP++L+ LRKLRR+ + S+VS++
Sbjct: 358 TKHVEALEDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVDDLRKLRRK-GVFDSQVSLVW 416
Query: 560 DIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHI------DNLKERDYN--- 603
DIR++E +I D+GRI RPL + E G+L+L K HI + LKE +N
Sbjct: 417 DIREKEFKISGDSGRIVRPLFVVETDRASENLGNLVLNKDHITKIDQTNYLKESGFNFTD 476
Query: 604 ---NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGWQ L++SGVVEY+D EEET M+ M
Sbjct: 477 EFKPYGWQDLLESGVVEYLDAEEEETAMLVM 507
>gi|262302357|gb|ACY43771.1| RNA polymerase subunit 1 [Orchesella imitari]
Length = 236
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/218 (92%), Positives = 209/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI ENG LLL+KRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENGKLLLRKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+Y N+GWQ LV GVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKEREYTNFGWQDLVARGVVEYIDTLEEETVMIAM 218
>gi|262302383|gb|ACY43784.1| RNA polymerase subunit 1 [Stenochrus portoricensis]
Length = 235
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/233 (87%), Positives = 213/233 (91%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
ID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 181 IDRLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDIQDKVQAYCST 233
>gi|262302347|gb|ACY43766.1| RNA polymerase subunit 1 [Lynceus sp. 'Lyn']
Length = 233
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/233 (87%), Positives = 215/233 (92%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD+TKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADSTKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQ+M TLRKLRRQMDIIVSEVS+IRDI+DREIRI+TDAGRICRPLLI ENG LLLKKR
Sbjct: 121 PEQIMSTLRKLRRQMDIIVSEVSMIRDIQDREIRIYTDAGRICRPLLIVENGKLLLKKRQ 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
ID LKER+YNN+ WQ L+ SGVVEYIDTLEEETTMIAM ++ G Y T
Sbjct: 181 IDMLKEREYNNFSWQDLIASGVVEYIDTLEEETTMIAMSPEDLRQGRDAYCST 233
>gi|396941909|gb|AFN89672.1| RNA polymerase II, partial [Nakazawaea holstii]
Length = 786
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/403 (52%), Positives = 273/403 (67%), Gaps = 50/403 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++EAFVIQ++ AL+FIG RG G+ +E+RI+YA++IL KE+LPH+ +
Sbjct: 1 LEMLKPCVEEAFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILTKELLPHITQEEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 61 ETRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ +DFNL LA+++ IT GL+YSLATGNWG+QKKA ARAGVSQVLNR T++S
Sbjct: 121 YMQKCVETNRDFNLALAVRSNTITAGLKYSLATGNWGEQKKAMTARAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
IL +LEEW M+ +E+ P + +IFVNG WVG H DP QL +R LRRQ D I
Sbjct: 241 SDAILLYLEEWGMQAVEDFTPYKEPENARIFVNGVWVGTHSDPAQLNSAIRDLRRQGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKE----- 599
EVSI+RDIR++E +I TDAGR+ RPL I ++ G L L+K HI L E
Sbjct: 300 NPEVSIVRDIREKEFKIFTDAGRVYRPLFIVDDDEDSEHKGELKLRKEHIHKLIEGADQD 359
Query: 600 -----------RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
D N +GW LV++GV+EY+D EEET MIAM
Sbjct: 360 QIMYNEDEDEDEDENLFGWSGLVKNGVIEYVDAEEEETIMIAM 402
>gi|396941815|gb|AFN89625.1| RNA polymerase II, partial [Tetrapisispora phaffii]
Length = 775
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/413 (51%), Positives = 281/413 (68%), Gaps = 48/413 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++ FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEAGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E++KA+FLGYM++RLLL +L R++ DDRDH+ +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ DFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ FL EW ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI
Sbjct: 241 PMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGS------LLLKKRHIDNLKERDYNNY 605
EVS+IRDIR++E++I TDAGR+ RPL I ++ L ++K H+ L +Y +
Sbjct: 300 NPEVSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRKGHVARLMATEYQD- 358
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
++ G + +EE T W L+ G+VEYID EEE+ +IAM P
Sbjct: 359 -----IEGG----FEDVEEYT-----WTSLLNEGLVEYIDAEEEESILIAMQP 397
>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1185
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/699 (36%), Positives = 393/699 (56%), Gaps = 62/699 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS---PQIDLQAEAQHTSTE 57
L E W VI+++F EKGLV QQLDS+++F+ M + +++E P+ D Q + T E
Sbjct: 33 LDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMIESMAVIPRQDDQYDPGVTMEE 91
Query: 58 VETPPRYLLKFEQIYLSKPTHWEKD----GSPSPMMPNEARLRNLTYSAPLYVDITKTVV 113
PR +L + + + P+H + GS P+ PNE RLR++TY A V + +
Sbjct: 92 QRDQPRLVL--QDVVIGNPSHQTQSYFAGGSLPPLFPNECRLRDMTYDAQAQVTLGVELY 149
Query: 114 R-QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
+ P T + +G+IPIML+S C L+G + +L LNECP D GGYF+ING+EK
Sbjct: 150 HPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEK 209
Query: 173 VLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
VLIAQE+ A N VY FS + E++S +E S TL + M + K
Sbjct: 210 VLIAQERQAANHVYTFS---RQKGLLCEVKSIVEGSLNKPRTLQIIMQYKN----KGPGS 262
Query: 233 G-QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
G + ++ + + + IP+ ++FRA+ VAD++IL+ ++ D D M+E+++ S+ +A +
Sbjct: 263 GFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTL 322
Query: 292 Q--EQNVALNFIGAR-GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
Q + AL +IG R G + + +R A +L +++LPH+G K ++GYM
Sbjct: 323 QIFTREEALGYIGRRLGKQDAMANLQR--EAESLLMRDLLPHMGTDPSANRTKCLYMGYM 380
Query: 349 VHRLLLASLGRRELDDRDH-------------------YVRMYAQKFIDRGKD------- 382
VH+LLL +LGR E DRD ++ ++ I +D
Sbjct: 381 VHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRG 440
Query: 383 -FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F+ I +K+ITDGLR LATGN+GD K + + GV+Q LNRLT++SSLS+LRR+ +
Sbjct: 441 VFSFGRVIHSKLITDGLRRCLATGNFGDLKTGN-IKTGVAQTLNRLTYSSSLSNLRRIQN 499
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PI K +PR LH T WG ICP ETPEG ++GL+KN+ALM +S G+ + +++ ++
Sbjct: 500 PIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQA 559
Query: 502 WSMENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
++ I AD ++FVNG +G+ R+PE+L+ LR RR + + +EVSI+R
Sbjct: 560 -RIDGFRTIGLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGE-LSNEVSIVR 617
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGV 615
DIRDREIR+ +DAGR RPL +AEN L L+K + +L K + W ++ G
Sbjct: 618 DIRDREIRVFSDAGRCLRPLFVAENCHLKLRKSGMRDLLVSEKAGGKKSISWSTALKKGY 677
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
VE ID EE++ +IAM V+ Y E + +MI
Sbjct: 678 VELIDCEEEDSLLIAMTPSEVEKNY--YYSHCEMDPSMI 714
>gi|262302283|gb|ACY43734.1| RNA polymerase subunit 1 [Argulus sp. Arg2]
Length = 236
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/218 (91%), Positives = 210/218 (96%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD+TKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADSTKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLIA+N LLLKKRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIADNQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LK+R+Y+NY WQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 IEMLKDREYSNYSWQDLVASGVVEYIDTLEEETVMIAM 218
>gi|157814082|gb|ABV81786.1| putative DNA-directed RNA polymerase II subunit 2 [Mastigoproctus
giganteus]
Length = 235
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/233 (87%), Positives = 213/233 (91%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
ID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y +
Sbjct: 181 IDRLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQDKVQAYCSS 233
>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
Length = 1181
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/699 (36%), Positives = 392/699 (56%), Gaps = 62/699 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS---PQIDLQAEAQHTSTE 57
L E W VI+++F EKGLV QQLDS+++F+ M + +++E P+ D Q + T E
Sbjct: 29 LDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMIESMAVIPRQDDQYDPGVTMEE 87
Query: 58 VETPPRYLLKFEQIYLSKPTH----WEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV 113
PR +L + + + P+H + G P+ PNE RLR++TY A V + +
Sbjct: 88 QRDQPRLVL--QDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLGVELY 145
Query: 114 R-QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
+ P T + +G+IPIML+S C L+G + +L LNECP D GGYF+ING+EK
Sbjct: 146 HPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEK 205
Query: 173 VLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
VLIAQE+ A N VY FS + E++S +E S TL + M + K
Sbjct: 206 VLIAQERQAANHVYTFSRQKGLLC---EVKSIVEGSLNKPRTLQIIMQYKN----KGPGS 258
Query: 233 G-QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
G + ++ + + + IP+ ++FRA+ VAD++IL+ ++ D D M+E+++ S+ +A +
Sbjct: 259 GFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTL 318
Query: 292 Q--EQNVALNFIGAR-GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
Q + AL +IG R G + + +R A +L +++LPH+G K ++GYM
Sbjct: 319 QIFTREEALGYIGRRLGKQDAMANLQR--EAESLLMRDLLPHMGTDPSANRTKCLYMGYM 376
Query: 349 VHRLLLASLGRRELDDRDH-------------------YVRMYAQKFIDRGKD------- 382
VH+LLL +LGR E DRD ++ ++ I +D
Sbjct: 377 VHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRG 436
Query: 383 -FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F+ I +K+ITDGLR LATGN+GD K + + GV+Q LNRLT++SSLS+LRR+ +
Sbjct: 437 VFSFGRVIHSKLITDGLRRCLATGNFGDLKTGN-IKTGVAQTLNRLTYSSSLSNLRRIQN 495
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PI K +PR LH T WG ICP ETPEG ++GL+KN+ALM +S G+ + +++ ++
Sbjct: 496 PIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQA 555
Query: 502 WSMENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
++ I AD ++FVNG +G+ R+PE+L+ LR RR + + +EVSI+R
Sbjct: 556 -RIDGFRTIGLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGE-LSNEVSIVR 613
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGV 615
DIRDREIR+ +DAGR RPL +AEN L L+K + NL K + W ++ G
Sbjct: 614 DIRDREIRVFSDAGRCLRPLFVAENCHLKLRKSGMRNLLVSEKAGGKKSISWNTALKKGY 673
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
VE ID EE++ +IAM V+ Y E + +MI
Sbjct: 674 VELIDCEEEDSLLIAMTPNEVEKNY--YYSHCEMDPSMI 710
>gi|396941963|gb|AFN89698.1| RNA polymerase II, partial [Saitoella complicata]
Length = 727
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/433 (49%), Positives = 282/433 (65%), Gaps = 53/433 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
++++KP L+EA VI E+++AL++IG RG P + +E+R++YA +I+QKE+LPH+ S
Sbjct: 1 LDLLKPCLEEADVILEKDLALDYIGRRGNNPQMGREKRLRYAHDIMQKELLPHITTSVGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E +KA+FLGYM HRLLL +L RR+ DDRDH+ V
Sbjct: 61 ENRKAFFLGYMCHRLLLCALERRDQDDRDHFGKKRLDLAGPLLGGLFRMLFKKLSRDVYK 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ GK+FN +KT IT GL+YSLATGNWGDQ K R GVSQVLNR TFAS
Sbjct: 121 YMQKCVETGKEFNAAAGMKTSTITQGLKYSLATGNWGDQAKGLANRVGVSQVLNRYTFAS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+YISV
Sbjct: 181 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYISVSRP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
+ I+E L W +E E+ + +A+ DAT+IF+NG W+G+HRDP L+ LR +RR +I
Sbjct: 241 SAQIIENLNNWGIEGFEQYSANAVPDATRIFLNGVWLGVHRDPSILVNALRDMRRTAEIP 300
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIA-------ENGSLLLKKRHIDNLKERDYNN 604
V +VS++RDIR+RE+RI TDAGR+ RPL I ENG L++ H++ ++E YN
Sbjct: 301 V-DVSVVRDIREREVRIFTDAGRVMRPLFIVNNEEPSEENGDLVITHNHVERIRESKYNA 359
Query: 605 ----------YGWQVLVQSGVVEYIDTLEEETTMIAM------WQVLVQSGVVEYIDTLE 648
Y W LV+ G VEYID EEET MIAM W V++G + E
Sbjct: 360 DNDIETNEAPYDWHSLVREGCVEYIDAEEEETCMIAMTTEDLDWAKAVKAG---WEPAKE 416
Query: 649 EETTMIAMSPRLK 661
++ A+ RLK
Sbjct: 417 KQQDQSAVGERLK 429
>gi|262302339|gb|ACY43762.1| RNA polymerase subunit 1 [Limnadia lenticularis]
Length = 235
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/233 (86%), Positives = 214/233 (91%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD+TKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADSTKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDI+DREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMTTLRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
+D LKER+YNN+ WQ LV SGVVEYIDTLEEET MIAM ++ G Y T
Sbjct: 181 VDMLKEREYNNFTWQDLVASGVVEYIDTLEEETAMIAMSPEDLRQGKDAYCTT 233
>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
strain Friedlin]
Length = 1185
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 258/699 (36%), Positives = 393/699 (56%), Gaps = 62/699 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS---PQIDLQAEAQHTSTE 57
L E W VI+++F EKGLV QQLDS+++F+ M + +++E P+ D Q + T E
Sbjct: 33 LDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMIESMAVIPRQDDQYDPGVTMEE 91
Query: 58 VETPPRYLLKFEQIYLSKPTH----WEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV 113
PR +L + + + P+H + G P+ PNE RLR++TY A V + +
Sbjct: 92 QRDQPRLVL--QDVVIGNPSHQTHSYFTGGPLPPLFPNECRLRDMTYDAQAQVTLGVELY 149
Query: 114 R-QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
+ P T + +G+IPIML+S C L+G + +L LNECP D GGYF+ING+EK
Sbjct: 150 HPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEK 209
Query: 173 VLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
VLIAQE+ A N VY FS + E++S +E S TL + M R K
Sbjct: 210 VLIAQERQAANHVYTFSRQKGLLC---EVKSIVEGSLNKPRTLQIIMQYRN----KGPGS 262
Query: 233 G-QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
G + ++ + + + IP+ ++FRA+ VAD++IL+ ++ D D M+E+++ S+ +A +
Sbjct: 263 GFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTL 322
Query: 292 Q--EQNVALNFIGAR-GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
Q + AL +IG R G + + +R A +L +++LPH+G K ++GYM
Sbjct: 323 QIFTREEALGYIGRRLGKQDAMANLQR--EAESLLMRDLLPHMGTDPSANRTKCLYMGYM 380
Query: 349 VHRLLLASLGRRELDDRDH-------------------YVRMYAQKFIDRGKD------- 382
VH+LLL +LGR E DRD ++ ++ I +D
Sbjct: 381 VHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRG 440
Query: 383 -FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F+ I +K+ITDGLR LATGN+GD K + + GV+Q LNRLT++SSLS+LRR+ +
Sbjct: 441 VFSFGRVIHSKLITDGLRRCLATGNFGDLKTGN-IKTGVAQTLNRLTYSSSLSNLRRIQN 499
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PI K +PR LH T WG ICP ETPEG ++GL+KN+ALM +S G+ + +++ ++
Sbjct: 500 PIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQA 559
Query: 502 WSMENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
++ I AD ++FVNG +G+ R+PE+L+ LR RR + + +EVSI+R
Sbjct: 560 -RIDGFRTIGLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGE-LSNEVSIVR 617
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGV 615
DIRDREIR+ +DAGR RPL +AEN L L+K + +L K + W+ ++ G
Sbjct: 618 DIRDREIRVFSDAGRCLRPLFVAENCRLKLRKSGMRDLLVSEKAGGKKSISWKTALKKGY 677
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
VE ID EE++ +IAM V+ Y E + +MI
Sbjct: 678 VELIDCEEEDSLLIAMTPNEVEKNY--YYSHCEMDPSMI 714
>gi|396941869|gb|AFN89652.1| RNA polymerase II, partial [Lodderomyces elongisporus]
Length = 784
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/413 (51%), Positives = 274/413 (66%), Gaps = 49/413 (11%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQE+ VAL+FIG RG G+ E+RI+YA++ILQKE+LP++ + E
Sbjct: 1 EMLKPCVEEGFVIQEREVALDFIGRRGVL-GIRXEKRIQYAKDILQKELLPNITQEEGFE 59
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T+KA+ LGYMV+RLLL +L R+E DDRDH+ + Y
Sbjct: 60 TRKAFXLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNY 119
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 120 MQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 179
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 180 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 239
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PIL FL +W +E + P+ D T++FVNG WVG+H +P L+ +R LRR DI
Sbjct: 240 DPILSFLRDWGLEPXXDYTPANSPDVTRVFVNGVWVGVHXEPASLVDYMRDLRRNGDI-S 298
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLI-------AENGSLLLKKRHIDNLKERDYNNY 605
EVS+IRDIR +E +I TDAGR+ RPL I A G L L+K H++ L E Y Y
Sbjct: 299 PEVSLIRDIRXKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKEHVNQLLESSYEGY 358
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
D E+ W LV+ G+VEY+D EEET MIAM+P
Sbjct: 359 --------------DEDXEDAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTP 397
>gi|262302335|gb|ACY43760.1| RNA polymerase subunit 1 [Lepas anserifera]
Length = 236
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/218 (92%), Positives = 207/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIIDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEV ++RDIRDREIRI+TDAGRICRPLLI E G+LLLKKRH
Sbjct: 121 PEQLMTTLRKLRRQMDIIVSEVCMVRDIRDREIRIYTDAGRICRPLLIVEKGTLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNY W LV SGVVEYID LEEETTMIAM
Sbjct: 181 IDLLKEREYNNYSWHDLVASGVVEYIDCLEEETTMIAM 218
>gi|262302341|gb|ACY43763.1| RNA polymerase subunit 1 [Plathemis lydia]
Length = 232
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/214 (93%), Positives = 207/214 (96%)
Query: 418 AGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 477
AGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV
Sbjct: 1 AGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 60
Query: 478 KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 537
KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL
Sbjct: 61 KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 120
Query: 538 MGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL 597
M TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI NG+LLLKKR I+ L
Sbjct: 121 MATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVXNGTLLLKKRTIEML 180
Query: 598 KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
KER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 KEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 214
>gi|396941839|gb|AFN89637.1| RNA polymerase II, partial [Saccharomycodes ludwigii]
Length = 782
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/423 (50%), Positives = 283/423 (66%), Gaps = 52/423 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQ++ AL+FIG RG+ G+ KE+RI+ ++ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDRETALDFIGXRGSAIGIKKEKRIQXVKDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E +KA+F GYMV+RLLL +L R++ DD DH+ +
Sbjct: 61 EGRKAFFXGYMVNRLLLCALDRKDQDDXDHFGKKRLDLAGPLLAQLFRTLFKKLTRDIFR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
+ Q+ ++ KDFNL+LA+K +T GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 FMQRSVEEAKDFNLKLAVKAXTLTXGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PSPI+ FL EW ME LE+ P DAT++FVNG W GIHR+P +L+ T++KLRR+ D I
Sbjct: 241 PSPIITFLNEWGMEPLEDYVPYQSPDATRVFVNGVWHGIHRNPAKLVDTIKKLRRRGD-I 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYN-- 603
EVSI+RDIR++E++I TDAGR+ RPL + E+ L ++K HI L +Y+
Sbjct: 300 TPEVSIVRDIREKELKIFTDAGRVYRPLFLVEDNEDTGIKELKVRKGHIRKLMITEYHDI 359
Query: 604 ----------------NYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTL 647
NY W L+ G+VEYID EEET +IAM + + G+ D L
Sbjct: 360 EGGFDEEDEDDDNEKTNYTWSSLLSDGLVEYIDAEEEETILIAMQREDLDPGISANPD-L 418
Query: 648 EEE 650
EEE
Sbjct: 419 EEE 421
>gi|262302291|gb|ACY43738.1| RNA polymerase subunit 1 [Chthamalus fragilis]
Length = 236
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/218 (92%), Positives = 206/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIIDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEV ++RDIRDREIRI+TDAGRICRPLLI E G LLLKKRH
Sbjct: 121 PEQLMTTLRKLRRQMDIIVSEVCMVRDIRDREIRIYTDAGRICRPLLIVEKGQLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNY W LV SGVVEYID LEEETTMIAM
Sbjct: 181 IDMLKEREYNNYSWHDLVASGVVEYIDCLEEETTMIAM 218
>gi|396941943|gb|AFN89688.1| RNA polymerase II, partial [Komagataella pastoris]
Length = 771
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/402 (52%), Positives = 273/402 (67%), Gaps = 48/402 (11%)
Query: 288 AFVIQEQNVALNFIGARG-ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLG 346
FVIQ++ VAL+FIG RG A G+ +E+RI+YA++ILQKE+LPH+ + ET+K +FLG
Sbjct: 1 GFVIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLPHITQEEGFETRKTFFLG 60
Query: 347 YMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRG 380
YMV+RLLL +L R++ DDRDH+ + Y Q+ I+
Sbjct: 61 YMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYRYMQRCIETD 120
Query: 381 KDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
+DFNL LA+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N
Sbjct: 121 RDFNLNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTN 180
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+L++ IS+GS PI+ FLE
Sbjct: 181 TPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGSPSEPIINFLE 240
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD 560
EW ME LE+ P+ +T+IFVNG W GIHRDP L+ T+R LRR I EVSIIRD
Sbjct: 241 EWGMEPLEDYDPAQHTRSTRIFVNGVWTGIHRDPSMLVSTMRDLRRS-GAISPEVSIIRD 299
Query: 561 IRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHI-------------DNLKER 600
IR+RE +I TD GR+ RPL I E+ G L + K HI D+ +E+
Sbjct: 300 IREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHIRKIQQGYDDDAMNDDSEEQ 359
Query: 601 DYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVE 642
+ + YGW LV SGV+EY+D EEET MIAM +Q+ +E
Sbjct: 360 EQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSLE 401
>gi|262302279|gb|ACY43732.1| RNA polymerase subunit 1 [Abacion magnum]
Length = 235
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/233 (87%), Positives = 212/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFASSLSHLRR+NSPIGR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASSLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIA SAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIASSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
ID LKER+YNNYGW LV SGVVEYIDT+EEET M+AM +Q V Y T
Sbjct: 181 IDMLKEREYNNYGWNDLVASGVVEYIDTMEEETVMLAMTPDDLQDKGVAYCST 233
>gi|262302271|gb|ACY43728.1| RNA polymerase subunit 1 [Aphonopelma chalcodes]
Length = 236
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/218 (90%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+D LKER+YNNY WQ LV +GVVEYIDTLEEET M+AM
Sbjct: 181 VDKLKEREYNNYSWQDLVANGVVEYIDTLEEETVMLAM 218
>gi|262302379|gb|ACY43782.1| RNA polymerase subunit 1 [Skogsbergia lerneri]
Length = 236
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/219 (90%), Positives = 210/219 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIANATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLMGTLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI E+ LLLKKRH
Sbjct: 121 PEQLMGTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEDNKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW 632
ID LK+R+YN+Y WQ LV SGVVEYIDTLEEET M+ M+
Sbjct: 181 IDLLKDREYNSYSWQDLVASGVVEYIDTLEEETVMVVMF 219
>gi|402697347|gb|AFQ90861.1| 140kDa polymerase RNAII DNA-directed polypeptide B, partial
[Testudo hermanni]
Length = 225
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/224 (86%), Positives = 211/224 (94%)
Query: 45 IDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPL 104
IDLQAEAQH + EVE PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPL
Sbjct: 2 IDLQAEAQHATGEVEXPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPL 61
Query: 105 YVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGY 164
YVDITKTV+++GE+ + TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGY
Sbjct: 62 YVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGY 121
Query: 165 FIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
FIINGSEKVLIAQEKMATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGG
Sbjct: 122 FIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGG 181
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
Q KKSAIGQRI+A LPYIKQE+PI+IVFRALGFV+DRDILEHI
Sbjct: 182 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHI 225
>gi|396941795|gb|AFN89615.1| RNA polymerase II, partial [Ogataea angusta]
Length = 786
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/414 (51%), Positives = 273/414 (65%), Gaps = 39/414 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ Q VAL++IG RG G+ KERRI+YA++ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNSIGIKKERRIQYAKDILQREFLPHISQDSGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAYFLGY+V+RLLL +L R+E DDRDH+ +
Sbjct: 61 ETNKAYFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+RG DFN+ A+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRCIERGDDFNIVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LMA SVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSA 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E L + P +AT++F+NG WVG HRDP L+ T+R+LRR I
Sbjct: 241 SEPITYLLEEWGLEPLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVETMRQLRRS-GTI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVS+IRDIR+RE +I TDAGRI RPL I +N G L L K H + +R+
Sbjct: 300 SPEVSLIRDIREREFKIFTDAGRIYRPLFIVDNDPDSEHKGELKLTKEHCRKILDREV-- 357
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ +VQ + + W L+ +G++EY+D EEET +IAMSP
Sbjct: 358 ---EEIVQDEEFDDEGQPLGPVQRVFGWDSLLSNGIIEYLDAEEEETVLIAMSP 408
>gi|262302369|gb|ACY43777.1| RNA polymerase subunit 1 [Polyxenus fasciculatus]
Length = 234
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/218 (90%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFASSLSHLRR+NSPIGR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASSLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLK+RH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQRLLLKRRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+NLKER+YNNY WQ LV SGVVEYID++E ET MIAM
Sbjct: 181 IENLKEREYNNYSWQELVASGVVEYIDSMESETVMIAM 218
>gi|396941851|gb|AFN89643.1| RNA polymerase II, partial [Dekkera bruxellensis]
Length = 785
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 212/414 (51%), Positives = 277/414 (66%), Gaps = 39/414 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
MEM+KP ++E F+IQ Q VAL+FIG RG G+ ++RRI++A++ILQ+E LPH+
Sbjct: 1 MEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRDRRIQFAKDILQREFLPHISQDSGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAYFLGY+V+RLLL +L RRE DDRDH+ +
Sbjct: 61 ETNKAYFLGYIVNRLLLCALERREPDDRDHFGKKRLDLAGPLLANLFRILFRKLSKDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+RG+D N+ A+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T+AS
Sbjct: 121 YMQRCIERGEDXNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYAS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LMA ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMAGISVGTS 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E L + P +AT++F+NG WVG HRDP L+ T+R+LRR I
Sbjct: 241 SEPISYLLEEWGLEPLSDYDPQEHKNATRVFLNGNWVGTHRDPGMLVDTMRQLRRS-GTI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVS++RDIR+RE +I TDAGR+ RPL I +N G+L + K + +++R+
Sbjct: 300 SPEVSLVRDIREREFKIFTDAGRVYRPLFIVDNDPDSPRKGNLKITKDDVRKIRDREV-- 357
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ + V+ E + W LV +G+VEY+D EEETT+IAMSP
Sbjct: 358 ---EEIAPEEDVDEDGNPAEPIRRVYGWDSLVTNGMVEYLDAEEEETTLIAMSP 408
>gi|262302355|gb|ACY43770.1| RNA polymerase subunit 1 [Nicoletia meinerti]
Length = 233
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/215 (93%), Positives = 206/215 (95%)
Query: 417 RAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL
Sbjct: 1 RAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 60
Query: 477 VKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 536
VKNLALMAYISVGS PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ
Sbjct: 61 VKNLALMAYISVGSXPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ 120
Query: 537 LMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDN 596
LM TLRKLRRQMDIIVSEVS+I DI DREIRI+TDAGRICRPLLI E+G LLLKK+HID
Sbjct: 121 LMATLRKLRRQMDIIVSEVSMIXDIXDREIRIYTDAGRICRPLLIVESGQLLLKKKHIDM 180
Query: 597 LKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LKER+YNNYGWQVLV SGVVEYIDTLEEET MIAM
Sbjct: 181 LKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAM 215
>gi|396941807|gb|AFN89621.1| RNA polymerase II, partial [Kuraishia capsulata]
Length = 780
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/417 (52%), Positives = 275/417 (65%), Gaps = 50/417 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ++ VAL+FIG RG G+ KE+RI++AR+IL KE LPH+
Sbjct: 1 LEMLKPCVEEGFLIQDREVALDFIGRRGNAVGIRKEKRIQFARDILTKEFLPHITQEPGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
E +KA+FLGY+V+RLLL +L R+E DDRDH+ +
Sbjct: 61 ENRKAFFLGYIVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLSRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK I+ K+FNL LA+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQKCIETNKEFNLALAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P+ LEEW ME LEE A+AT++F+NG WVG HR+P L+ T+R+LRR+ DI
Sbjct: 241 SDPLHYLLEEWGMEPLEEYDSQEHANATRVFLNGVWVGTHREPALLVNTMRQLRRRGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRH---IDNLKERD 601
EVSIIRDIR+RE +I TDAGR+ RPL + ++ G L L K H I N +E D
Sbjct: 300 SPEVSIIRDIREREFKIFTDAGRVYRPLFVVDDDPESEHKGELKLTKEHCRKIINSEEDD 359
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
Y D E+E W LV GVVEY+D EEET +IAMSP
Sbjct: 360 -------------TAVYDDEEEDEGPKTFGWTSLVNHGVVEYVDAEEEETILIAMSP 403
>gi|262302289|gb|ACY43737.1| RNA polymerase subunit 1 [Semibalanus balanoides]
Length = 236
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/218 (91%), Positives = 206/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIIDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEV ++RDIRDREIRI+TDAGRICRPLLI E G LLLKKRH
Sbjct: 121 PEQLMTTLRKLRRQMDIIVSEVCMVRDIRDREIRIYTDAGRICRPLLIVEKGQLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LK+R+YNNY W LV SGVVEYID LEEETTMIAM
Sbjct: 181 IDMLKDREYNNYSWHDLVASGVVEYIDCLEEETTMIAM 218
>gi|396941835|gb|AFN89635.1| RNA polymerase II, partial [Kluyveromyces marxianus]
Length = 765
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/405 (51%), Positives = 275/405 (67%), Gaps = 45/405 (11%)
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 1 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 60
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + + Q+ ++ KD
Sbjct: 61 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKD 120
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FNL+LA+K IT GL+Y+LATGNWG+QKK+ +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 121 FNLKLAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 180
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 181 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEW 240
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D I EVSI+RDIR
Sbjct: 241 GMEPLEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGD-ITPEVSIVRDIR 299
Query: 563 DREIRIHTDAGRICRPLLIAENGS------LLLKKRHIDNLKERDYN------------N 604
++E++I TDAGR+ RPL I + + L +KK H+ L +Y N
Sbjct: 300 EKELKIFTDAGRVYRPLFIVDENTKTGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMN 359
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEE 649
Y W L+ G+VEYID EEET +IAM ++ V + +T EE
Sbjct: 360 YTWTSLLNEGLVEYIDAEEEETILIAMQHEDLEPAVQQATETEEE 404
>gi|396941801|gb|AFN89618.1| RNA polymerase II, partial [Ogataea minuta]
Length = 785
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/416 (51%), Positives = 272/416 (65%), Gaps = 43/416 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ Q VAL++IG RG G+ +ERRI+YA++ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNSVGIKRERRIQYAKDILQREFLPHISQDSGY 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAYFLGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 61 ETNKAYFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+RG DFN+ A+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 YMQRCIERGDDFNVVSAVKSNTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ +SVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCVSVGSA 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E L + P AT++F+NG WVG HRDP L+ T+R+LRR I
Sbjct: 241 SEPITYLLEEWGLEQLSDYEPQEHKHATRVFLNGNWVGTHRDPAMLVDTMRQLRRS-GTI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVS+IRDIR+RE +I TDAGRI RPL + ++ G L L K + +R+
Sbjct: 300 SPEVSLIRDIREREFKIFTDAGRIYRPLFVVDDDPDSEHKGELKLTKEDCRKILDREVEE 359
Query: 605 YGWQVLVQSGVVEYIDTLE--EETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+Y D E E I W L+ +GV+EY+D EEET +IAMSP
Sbjct: 360 VAQDE-------DYDDDGEPLEPIQRIYGWDSLLSNGVIEYLDAEEEETVLIAMSP 408
>gi|157814096|gb|ABV81793.1| putative DNA-directed RNA polymerase II subunit 2 [Triops
longicaudatus]
Length = 235
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/218 (90%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGQA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD+TKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADSTKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDI+DREIRI+TDAGRICRPLLI EN LLLKK+H
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMIRDIQDREIRIYTDAGRICRPLLIVENTKLLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNN+ WQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 IDMLKEREYNNFTWQDLVASGVVEYIDTLEEETAMIAM 218
>gi|262302361|gb|ACY43773.1| RNA polymerase subunit 1 [Peripatus sp. 'Pep']
Length = 235
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 200/233 (85%), Positives = 211/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTF S+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFVSTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+PS+IADATKIFVNGCWVG+HRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPSSIADATKIFVNGCWVGVHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TL+KLRRQMDIIVSEVSI+RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMNTLKKLRRQMDIIVSEVSIVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
ID LKER+YNNY WQ LV SGVVEYID +EEET M+AM +Q V Y T
Sbjct: 181 IDMLKEREYNNYSWQDLVASGVVEYIDAMEEETVMLAMTPDDLQEKGVAYCST 233
>gi|262302367|gb|ACY43776.1| RNA polymerase subunit 1 [Peripatoides novaezealandiae]
Length = 235
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/233 (86%), Positives = 211/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTF S+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFVSTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+PSAIADATKIFVNGCWVG+HRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPSAIADATKIFVNGCWVGVHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TL+KLRRQMDIIVSEVSI+RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMITLKKLRRQMDIIVSEVSIVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
ID LKER+YNNY WQ LV SGVVEYID +EEET M+AM +Q V Y T
Sbjct: 181 IDMLKEREYNNYSWQDLVASGVVEYIDAMEEETVMLAMTPDDLQEKGVAYCST 233
>gi|262302301|gb|ACY43743.1| RNA polymerase subunit 1 [Craterostigmus tasmanianus]
Length = 235
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/233 (84%), Positives = 212/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRR+NSP+GR+GKLAKPRQLHNTLWGM+CPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRMNSPVGREGKLAKPRQLHNTLWGMVCPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAP+AIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPTAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKK H
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKHH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
+D+LKER+YNNY WQ LV S VVEYIDT+EEET M+AM +Q V Y T
Sbjct: 181 VDSLKEREYNNYSWQDLVASSVVEYIDTMEEETIMLAMTPDDLQDKAVAYCST 233
>gi|262302307|gb|ACY43746.1| RNA polymerase subunit 1 [Derocheilocaris typicus]
Length = 236
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/218 (90%), Positives = 207/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHN+LWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI +N LLLKKRH
Sbjct: 121 PEQLMSTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVDNMKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNY WQ LV SGVVEYIDT EEE+ MI+M
Sbjct: 181 IDLLKEREYNNYSWQDLVASGVVEYIDTQEEESVMISM 218
>gi|262302365|gb|ACY43775.1| RNA polymerase subunit 1 [Phrynus marginemaculatus]
Length = 235
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/218 (89%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKK+H
Sbjct: 121 PDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+D LK+R+YN+Y WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 181 VDKLKDREYNDYSWQDLVASGVVEYIDTLEEETVMLAM 218
>gi|402697345|gb|AFQ90860.1| 140kDa polymerase RNAII DNA-directed polypeptide B, partial
[Malaclemys terrapin]
Length = 225
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/224 (85%), Positives = 210/224 (93%)
Query: 45 IDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPL 104
IDLQAEAQH + EVE PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPL
Sbjct: 2 IDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPL 61
Query: 105 YVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGY 164
YVDITKTV+++GE+ + TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGY
Sbjct: 62 YVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGY 121
Query: 165 FIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
FIINGSEKVLIAQEKMATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGG
Sbjct: 122 FIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGG 181
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHI 268
Q KKSAIGQRI+A LPYIKQE+PI+IVFRALGFV+DR ILEHI
Sbjct: 182 QGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRXILEHI 225
>gi|262302375|gb|ACY43780.1| RNA polymerase subunit 1 [Scutigera coleoptrata]
Length = 235
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/233 (85%), Positives = 213/233 (91%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAP+AIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPTAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
I+ LKER+YNNY WQ LV SGVVEYIDT+EEET M+AM +Q + Y T
Sbjct: 181 IEMLKEREYNNYSWQDLVASGVVEYIDTMEEETVMLAMTPDDLQDKGIAYCST 233
>gi|262302305|gb|ACY43745.1| RNA polymerase subunit 1 [Daphnia magna]
Length = 235
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/218 (89%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDI+DREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMATLRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+D LK+R+Y N+ WQ LV +GVVEYIDTLEEET MIAM
Sbjct: 181 VDMLKQREYINFSWQELVATGVVEYIDTLEEETAMIAM 218
>gi|262302377|gb|ACY43781.1| RNA polymerase subunit 1 [Scutigerella sp. 'Scu3']
Length = 235
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/233 (85%), Positives = 212/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQAR GVSQVLNRLT+AS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARPGVSQVLNRLTYASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKK+
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKQQ 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
I+NLKER+YNNY WQ LV SGVVEYIDT+EEET M+AM +Q V Y T
Sbjct: 181 IENLKEREYNNYSWQDLVASGVVEYIDTMEEETVMLAMTPDDLQDKGVAYCST 233
>gi|262302323|gb|ACY43754.1| RNA polymerase subunit 1 [Hadrurus arizonensis]
gi|262302327|gb|ACY43756.1| RNA polymerase subunit 1 [Heterometrus spinifer]
Length = 235
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/218 (89%), Positives = 207/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDI+VSEVS++RDIRDREIRI+TDAGRICRPLLI E LLLKKRH
Sbjct: 121 PDQLMSTLRKLRRQMDIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEKQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNNY WQ LV SGVVEYIDT+EEET M+AM
Sbjct: 181 IDRLKEREYNNYSWQDLVASGVVEYIDTMEEETVMLAM 218
>gi|262302269|gb|ACY43727.1| RNA polymerase subunit 1 [Armillifer armillatus]
Length = 234
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 196/216 (90%), Positives = 206/216 (95%)
Query: 416 ARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVG 475
ARAGV+QVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG AVG
Sbjct: 1 ARAGVAQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGTAVG 60
Query: 476 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPE 535
LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVG+HRDPE
Sbjct: 61 LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGVHRDPE 120
Query: 536 QLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHID 595
QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLK+RH+D
Sbjct: 121 QLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKRRHVD 180
Query: 596 NLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LKER+Y+NY WQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 MLKEREYSNYSWQDLVASGVVEYIDTLEEETVMIAM 216
>gi|157814076|gb|ABV81783.1| putative DNA-directed RNA polymerase II subunit 2 [Lithobius
forticatus]
Length = 235
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/233 (85%), Positives = 212/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFASSLSHLRR+NSPIGR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASSLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAP+AIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPTAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++R IR+REIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMVRGIREREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
+D LKER+YNNY WQ LV SGVVEYIDT+EEET M+AM +Q V Y T
Sbjct: 181 VDMLKEREYNNYSWQDLVASGVVEYIDTMEEETIMLAMTPDDLQDKRVAYCST 233
>gi|262302281|gb|ACY43733.1| RNA polymerase subunit 1 [Amblyomma sp. 'Amb2']
Length = 235
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/233 (84%), Positives = 214/233 (91%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI E+ LLLK+RH
Sbjct: 121 PDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
IDNLK+R+YNNY WQ LV SGVVEYIDTLEEET M++M +Q + Y T
Sbjct: 181 IDNLKDREYNNYSWQDLVASGVVEYIDTLEEETVMLSMTPDDLQDKGLAYCST 233
>gi|262302311|gb|ACY43748.1| RNA polymerase subunit 1 [Eumesocampa frigilis]
Length = 231
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 199/213 (93%), Positives = 204/213 (95%)
Query: 419 GVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
GVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK
Sbjct: 1 GVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 60
Query: 479 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 538
NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM
Sbjct: 61 NLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLM 120
Query: 539 GTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLK 598
TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI E G L LKKRHI+ LK
Sbjct: 121 STLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGKLSLKKRHIEMLK 180
Query: 599 ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ER+YNNYGWQ LV SGVVEYIDTLEEET MIAM
Sbjct: 181 EREYNNYGWQDLVASGVVEYIDTLEEETVMIAM 213
>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1185
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 252/699 (36%), Positives = 391/699 (55%), Gaps = 62/699 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDS---PQIDLQAEAQHTSTE 57
L E W VI+++F EKGLV QQLDS+++F+ M + +++E P+ D Q + T E
Sbjct: 33 LDSEDIWEVISSFFREKGLVHQQLDSYNDFL-MRIPKMIESMAVIPRQDDQYDPGVTMEE 91
Query: 58 VETPPRYLLKFEQIYLSKPTH----WEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV 113
PR +L + + + P+H + G P+ PNE RLR++TY A V + +
Sbjct: 92 QRDQPRLVL--QDVVIGNPSHQTHSYFAGGPLPPLFPNECRLRDMTYDAQAQVTLGVELY 149
Query: 114 R-QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
+ P T + +G+IPIML+S C L+G + +L LNECP D GGYF+ING+EK
Sbjct: 150 HPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEK 209
Query: 173 VLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
VLIAQE+ A N VY FS + E++S +E S TL + M R +
Sbjct: 210 VLIAQERQAANHVYTFSRQKGLLC---EVKSIVEGSLNKPRTLQIIMPYRN----RGPGS 262
Query: 233 G-QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
G + ++ + + + IP+ ++FRA+ VAD++IL+ ++ D D M+E+++ S+ +A +
Sbjct: 263 GFESLMCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDASTL 322
Query: 292 Q--EQNVALNFIGAR-GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
Q + AL +IG R G + + +R A +L +++LPH+G K ++GYM
Sbjct: 323 QIFTREEALGYIGRRLGKQDAMANLQR--EAESLLMRDLLPHMGTDPSANRTKCLYMGYM 380
Query: 349 VHRLLLASLGRRELDDRDH-------------------YVRMYAQKFIDRGKD------- 382
VH+LLL +LGR E DRD ++ ++ I +D
Sbjct: 381 VHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRG 440
Query: 383 -FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
F+ I ++++TDGLR LATGN+GD K + + GV+Q LNRLT++SSLS+LRR+ +
Sbjct: 441 VFSFGRVIHSRLVTDGLRRCLATGNFGDLKTGN-IKTGVAQTLNRLTYSSSLSNLRRIQN 499
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PI K +PR LH T WG ICP ETPEG ++GL+KN+ALM +S G+ + +++ ++
Sbjct: 500 PIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAVQA 559
Query: 502 WSMENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
++ I AD ++FVNG +G+ R+PE+L+ LR RR + + +EVSI+R
Sbjct: 560 -RIDGFRTIGLEDTADVRVARVFVNGTMIGVDRNPERLLHDLRTRRRNGE-LSNEVSIVR 617
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL----KERDYNNYGWQVLVQSGV 615
DIRDREIR+ +D GR RPL + EN L L+K + +L K + W +++ G
Sbjct: 618 DIRDREIRVFSDGGRCLRPLFVVENCHLKLRKSSMRDLLVSEKAGGKKSISWNTVLKKGY 677
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
VE ID EE++ ++AM V+ Y E + +MI
Sbjct: 678 VELIDCEEEDSLLVAMTPSEVEKNY--YYSHCEMDPSMI 714
>gi|157814088|gb|ABV81789.1| putative DNA-directed RNA polymerase II subunit 2 [Cypridopsis
vidua]
Length = 235
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/218 (88%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMEN EEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENXEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMD++VSEVS++RDIRDREIRI+TDAGRICRPLLI E+G LLLK+ H
Sbjct: 121 PEQLMSTLRKLRRQMDVVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDGKLLLKRTH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID+LK+R+YNN+ WQ LV + VVEYIDTLEEET MIAM
Sbjct: 181 IDSLKDREYNNFSWQDLVAASVVEYIDTLEEETAMIAM 218
>gi|262302373|gb|ACY43779.1| RNA polymerase subunit 1 [Prokoenenia wheeleri]
Length = 235
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/233 (84%), Positives = 213/233 (91%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQLHNT WGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTQWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLMGTLRKLRR+MDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PDQLMGTLRKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
++ LKER+YNNY WQ LV SGVVEYIDT+EEET M+AM +Q V Y T
Sbjct: 181 VEMLKEREYNNYSWQDLVASGVVEYIDTMEEETVMLAMTPDDLQDKDVAYCST 233
>gi|396941907|gb|AFN89671.1| RNA polymerase II, partial [Citeromyces matritensis]
Length = 784
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/415 (52%), Positives = 273/415 (65%), Gaps = 48/415 (11%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+ P +E FVIQ + VAL+F G RG+ G+ + +RI YAR+ILQKE LPH+ + E
Sbjct: 1 EMLXPCXEEGFVIQXREVALDFXGRRGSALGIRRXKRIXYARDILQKEFLPHISQEEGFE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM--------------------------Y 372
T+KA+FLGYMV+RLLL +L R+E DDRDH+ R Y
Sbjct: 61 TRKAFFLGYMVNRLLLCALERKEEDDRDHFGRKRLDLAGPLMAGLFRVLFRKLTKDIYRY 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ ++ KDFN LA+K IIT+GLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 121 MQRCVETNKDFNXNLAVKPSIITNGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
IL++L+EW ME LEE PS +TKIFVNG WVG HR P L+ ++ LRR+ DI
Sbjct: 241 DMILDYLDEWGMEPLEEYVPSDAEHSTKIFVNGVWVGTHRIPADLVRNIKDLRRRGDI-S 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK--ERDYN 603
EVSIIR+IR++E ++ TDAGR+ PL I ++ G L L K HI+ L+ + +
Sbjct: 300 PEVSIIRNIREKEFKLFTDAGRVYXPLFIVDDDPESENKGELKLNKSHIERLQAXQDETG 359
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
YG V + Y W LV++GVVEY+D EEET M AM+P
Sbjct: 360 EYGMDVDEEEEDGXY------------GWSSLVKNGVVEYVDAEEEETIMXAMAP 402
>gi|396941803|gb|AFN89619.1| RNA polymerase II, partial [Ambrosiozyma monospora]
Length = 785
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/420 (50%), Positives = 275/420 (65%), Gaps = 51/420 (12%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ Q VAL++IG RG G+ ++RRI++A++ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIKRDRRIQFAKDILQREFLPHISQDSGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAY+LGY+++RLLL +L R+E DDRDH+ +
Sbjct: 61 ETNKAYYLGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRVLFRKLSRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+RG+DFN+ A+K+ IT GL+YSLATGNWG+QKKA ++AGVSQVLNR T++S
Sbjct: 121 YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ +SVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCVSVGSS 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E L + P +AT++F+NG WVG HRDP L+ T+++LRR I
Sbjct: 241 SEPITYLLEEWGLEPLSDYDPHDHKNATRVFLNGNWVGNHRDPALLVETMKQLRRN-GTI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVS+IRDIR+RE +I TDAGRI RPL I +N G LLL K H + ER+
Sbjct: 300 SPEVSLIRDIREREFKIFTDAGRIYRPLFIVDNSEDSENKGGLLLTKEHCRKILEREVEE 359
Query: 605 YGWQVLVQSGVVEYIDTLEEETTM------IAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ D +E+ I W LV GVVEY+D EEET +IAMSP
Sbjct: 360 -----------IPQDDEFDEDGEALPPIERIFGWDSLVSGGVVEYLDAEEEETVLIAMSP 408
>gi|262302363|gb|ACY43774.1| RNA polymerase subunit 1 [Polyzonium germanicum]
Length = 235
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/233 (85%), Positives = 211/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
H ARAGVSQVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HTARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
ID LKER+YNNY W LV SGVVEYIDT+EEET M++M +Q V Y T
Sbjct: 181 IDLLKEREYNNYSWHDLVASGVVEYIDTMEEETVMLSMTPEDLQDKGVGYCST 233
>gi|262302285|gb|ACY43735.1| RNA polymerase subunit 1 [Artemia salina]
Length = 235
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/218 (90%), Positives = 207/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDI+DREIRI+TDAGRICRPLLI EN LLLKK H
Sbjct: 121 PEQLMTTLRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGRICRPLLIVENQRLLLKKTH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LKE++YNN+ W LV SGVVEY+DTLEEET MIAM
Sbjct: 181 IEQLKEKEYNNFVWNDLVASGVVEYVDTLEEETAMIAM 218
>gi|396941843|gb|AFN89639.1| RNA polymerase II, partial [Candida abiesophila]
Length = 785
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/413 (50%), Positives = 273/413 (66%), Gaps = 39/413 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ Q VAL+FIG RG G+ K+RRI++A++ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDFIGRRGNATGIKKDRRIQFAKDILQREFLPHISQDSGH 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAYFLGY++HRLLL +L R+E DDRDH+ +
Sbjct: 61 ETNKAYFLGYVIHRLLLCALERKEQDDRDHFGXKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+RG+DFN+ A+K+ IT GL+YSLATGNWG+QKKA ++AGVSQVLNR T+AS
Sbjct: 121 YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYAS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKN + M+ ISVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNXSXMSCISVGTA 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E + + P D+T++F+NG WVG HRDP L+ T+++LRR I
Sbjct: 241 SEPITYLLEEWGLEPMSDYDPQEHKDSTRVFLNGNWVGTHRDPSLLVETMKQLRRS-GTI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVS++RDIR++E +I TDAGR+ RP +N G L L K + +R+
Sbjct: 300 SPEVSLVRDIREKEFKIFTDAGRVYRPXFXVDNDPDSETKGGLKLTKEXCRKILDRE--- 356
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
+V+ E T++E T I W+ LV GVVEY+D EEET +IAMS
Sbjct: 357 --LEVIEGDEEFEEDGTIKEPETRIFGWESLVTGGVVEYLDAEEEETVLIAMS 407
>gi|262302381|gb|ACY43783.1| RNA polymerase subunit 1 [Scolopendra polymorpha]
Length = 235
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/218 (89%), Positives = 208/218 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAP+AIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPTAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+D LKE++YNNY WQ LV SGVVEYIDT+EEET M+AM
Sbjct: 181 VDMLKEKEYNNYSWQDLVASGVVEYIDTMEEETIMLAM 218
>gi|396941849|gb|AFN89642.1| RNA polymerase II, partial [Kregervanrija fluxuum]
Length = 785
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/413 (50%), Positives = 274/413 (66%), Gaps = 39/413 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ Q VAL+FIG RG G+ +ERRI++A++ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDSGH 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAYFLGY+++RLLL +L R+E DDRDH+ +
Sbjct: 61 ETNKAYFLGYVINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+RG+DFN+ A+K+ IT GL+YSLATGNWG+QKKA ++AGVSQVLNR T++S
Sbjct: 121 YMQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+Q
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTQ 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E L + P AT++F+NG WVG HRDP L+ T+++LRR I
Sbjct: 241 SEPITYLLEEWGLEPLSDYDPQEHKHATRVFLNGNWVGTHRDPGMLVDTMKQLRRS-GTI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVS+IRDIR+RE +I TDAGR+ RPL I ++ G L L K H + +R+
Sbjct: 300 SPEVSLIRDIREREFKIFTDAGRVYRPLFIVDDDPDSEHKGGLKLTKEHCRRILDREV-- 357
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
+ + Q + E I W LV +GVVEY+D EEET +IAMS
Sbjct: 358 ---EEIPQDDEFDENGEPLEPIQRIFCWDSLVTNGVVEYLDAEEEETVLIAMS 407
>gi|396941905|gb|AFN89670.1| RNA polymerase II, partial [Babjeviella inositovora]
Length = 758
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/395 (52%), Positives = 266/395 (67%), Gaps = 43/395 (10%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E FVIQ++ VAL+FIG RG+ G+ +E+RI+YA++IL KE+LPH+ + E
Sbjct: 1 EMLKPCVEEGFVIQDREVALDFIGRRGSALGIRREKRIQYAKDILTKELLPHITQEEGFE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
+KA+FLGYMV+RLLL +L R+E DDRDH+ + +
Sbjct: 61 NRKAFFLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRH 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
QK ++ K+F+L LA+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T+ S+
Sbjct: 121 MQKCVETNKEFHLTLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYTST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTTS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PI+ FLEEW ME LE+ D+T++FVNG WVG HR+P L+ T+R LRR+ D I
Sbjct: 241 EPIIYFLEEWGMEPLEDYVAHHSPDSTRVFVNGVWVGTHREPAMLVNTMRSLRRKGD-IS 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL----KERD 601
EVSIIRDIR +E +I T AGRI PL + + G L L ++ KE D
Sbjct: 300 PEVSIIRDIRKKEFKIFTXAGRIXXPLFVVXDDXEXPXKGQLXLXXSQVNXXXEPAKESD 359
Query: 602 -----YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW L+ SGVVEY+D EEET MIAM
Sbjct: 360 DVDMEEQKYGWDDLLNSGVVEYVDAEEEETIMIAM 394
>gi|262302345|gb|ACY43765.1| RNA polymerase subunit 1 [Loxothylacus texanus]
Length = 235
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/217 (91%), Positives = 204/217 (94%)
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 474
QARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV
Sbjct: 1 QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAV 60
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI DATKIFVNGCWVGIHRDP
Sbjct: 61 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIIDATKIFVNGCWVGIHRDP 120
Query: 535 EQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHI 594
EQLM TLRKLRRQMDIIVSEV ++RDIRDREIRI+TDAGRICRPLLI E LLLKKRHI
Sbjct: 121 EQLMTTLRKLRRQMDIIVSEVCMVRDIRDREIRIYTDAGRICRPLLIVEKERLLLKKRHI 180
Query: 595 DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
D LKER+YNNY W LV SGVVEYID LEEETTMIAM
Sbjct: 181 DMLKEREYNNYSWHDLVASGVVEYIDCLEEETTMIAM 217
>gi|396941817|gb|AFN89626.1| RNA polymerase II, partial [Nakaseomyces delphensis]
Length = 763
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/386 (52%), Positives = 265/386 (68%), Gaps = 43/386 (11%)
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGY
Sbjct: 1 GFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGY 60
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M++RLLL +L R++ DDRDH+ + Y Q+ ++
Sbjct: 61 MINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAN 120
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
DFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+
Sbjct: 121 DFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNT 180
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL E
Sbjct: 181 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSE 240
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDI
Sbjct: 241 WGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDI 299
Query: 562 RDREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYNN----------Y 605
R++E++I TDAGR+ RPL I E+ L ++K H+ L +Y + Y
Sbjct: 300 REQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEEY 359
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L+ G+VEYID EEE+ +IAM
Sbjct: 360 TWSSLLNEGLVEYIDAEEEESILIAM 385
>gi|262302337|gb|ACY43761.1| RNA polymerase subunit 1 [Libinia emarginata]
Length = 236
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/218 (89%), Positives = 206/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHN+LWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQP+PILEFLEEWSMENLEEIAPS+I DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPAPILEFLEEWSMENLEEIAPSSIEDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
EQLM TLRKLRRQMDIIVSEV ++RDIRDREIRI+TDAGRICRPLL+ ENG LLLKKRH
Sbjct: 121 AEQLMMTLRKLRRQMDIIVSEVCMVRDIRDREIRIYTDAGRICRPLLVVENGKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNN+ WQ LV SGVVEYID EEETTMIAM
Sbjct: 181 IDLLKEREYNNFSWQDLVASGVVEYIDCSEEETTMIAM 218
>gi|262302343|gb|ACY43764.1| RNA polymerase subunit 1 [Leiobunum verrucosum]
Length = 235
Score = 410 bits (1054), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/233 (84%), Positives = 211/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHN+LWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
+QLM TLRKLRRQMDI+VSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKK H
Sbjct: 121 ADQLMNTLRKLRRQMDIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKSH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
I+ LKER+YNNY WQ LV SGVVE+IDTLEEET M+AM +Q + Y T
Sbjct: 181 IEQLKEREYNNYSWQDLVASGVVEFIDTLEEETIMLAMMPDDIQDKDLAYCST 233
>gi|262302313|gb|ACY43749.1| RNA polymerase subunit 1 [Eremocosta gigasella]
Length = 235
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/233 (85%), Positives = 212/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TL KLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PDQLMNTLIKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
I+ LK+R+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q + Y T
Sbjct: 181 IEMLKDREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGMAYCST 233
>gi|396941797|gb|AFN89616.1| RNA polymerase II, partial [Ogataea methanolica]
Length = 784
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/415 (50%), Positives = 274/415 (66%), Gaps = 43/415 (10%)
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
EM+KP ++E F+IQ Q VAL++IG RG G+ +ERRI++A++ILQ+E LPH+ E
Sbjct: 1 EMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIRRERRIQFAKDILQREFLPHISQDTGFE 60
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMY 372
T KAY+LGY+++RLLL +L R+E DDRDH+ + Y
Sbjct: 61 TNKAYYLGYIINRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRY 120
Query: 373 AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
Q+ I+RG+DFN+ A+K+ IT GL+YSLATGNWG+QKKA +RAGVSQVLNR T++S+
Sbjct: 121 MQRCIERGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 180
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM +SVG+
Sbjct: 181 LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCVSVGTSS 240
Query: 493 SPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIV 552
PI LEEW +E L E P +AT++F+NG WVG HRDP L+ T+++LRR I
Sbjct: 241 EPITYLLEEWGLEPLSEYEPQEHKNATRVFLNGNWVGTHRDPGMLVETMKQLRRS-GTIS 299
Query: 553 SEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNY 605
EVS+IRDIR+RE +I TDAGRI RPL I ++ G L L K H + ER+
Sbjct: 300 PEVSLIRDIREREFKIFTDAGRIYRPLFIVDDDQDSEHKGELKLNKEHCRKILEREVEEI 359
Query: 606 GWQVLVQSGVVEYIDTLE--EETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
EY + E E + W+ L+ SGV+E++D EEET +IAMSP
Sbjct: 360 PQDE-------EYDEDGEPLEPIQRVFGWESLLSSGVIEFLDAEEEETVLIAMSP 407
>gi|262302319|gb|ACY43752.1| RNA polymerase subunit 1 [Eurypauropus spinosus]
Length = 235
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/217 (89%), Positives = 207/217 (95%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIA ++IAD+TKIFVNGCWVGIH+D
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAATSIADSTKIFVNGCWVGIHKD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PDQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
ID LKER+YNNY WQ LV SGVVEYIDT+EEET MI+
Sbjct: 181 IDMLKEREYNNYSWQDLVASGVVEYIDTMEEETVMIS 217
>gi|262302299|gb|ACY43742.1| RNA polymerase subunit 1 [Cryptocellus centralis]
Length = 235
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/233 (84%), Positives = 212/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSP+GRDGKLAKPRQLHNT WGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPVGRDGKLAKPRQLHNTQWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
+GLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIH+D
Sbjct: 61 IGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHKD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PDQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
I+ LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q + Y T
Sbjct: 181 IEMLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQDKGMAYCST 233
>gi|396941821|gb|AFN89628.1| RNA polymerase II, partial [Zygosaccharomyces rouxii]
Length = 773
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/398 (51%), Positives = 273/398 (68%), Gaps = 47/398 (11%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP +++ FVIQ++ AL+FIG RG G+ KE+RI+YAR+ILQKE LPH+ +
Sbjct: 1 LEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYARDILQKEFLPHITQLEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASL-----------GRRELD-----------------DRDHYV 369
E++KA+FLGYM++RLLL +L G++ LD RD +
Sbjct: 61 ESRKAFFLGYMINRLLLCALDRRDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRD--I 118
Query: 370 RMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 429
Y Q+ ++ KDFN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T+
Sbjct: 119 FRYMQRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTY 178
Query: 430 ASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVG 489
+S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG
Sbjct: 179 SSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVG 238
Query: 490 SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMD 549
+ P PI+ FL EW ME LE+ P +AT++FVNG W G+HR+P +LM TLR LRR+ D
Sbjct: 239 TDPMPIITFLSEWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMETLRTLRRKGD 298
Query: 550 IIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYN 603
I EVS++RDIR++E++I TDAGR+ RPL I ++ L ++K HI L +Y
Sbjct: 299 -INPEVSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHISKLMATEYQ 357
Query: 604 N----------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ Y W L+ G+VEYID EEET +I+M
Sbjct: 358 DIEGGFEDSEEYTWTSLLNDGLVEYIDAEEEETILISM 395
>gi|396941945|gb|AFN89689.1| RNA polymerase II, partial [Magnusiomyces magnusii]
Length = 778
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/411 (50%), Positives = 277/411 (67%), Gaps = 43/411 (10%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP +E V+Q++ VAL+FIG RG+ G+T+E+R++YAR+ILQKE LP++ +
Sbjct: 1 LEMLKPCXEEGXVVQDREVALDFIGRRGSAMGITREKRMRYARDILQKEXLPNITQEEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET+KA+FLGYM+H+LLL +L R + DDRDH+ +
Sbjct: 61 ETRKAFFLGYMIHKLLLVALDRSDPDDRDHFGKKRLDLAGPLLAQLFRILFKKLTRXIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ++ KDFNL LA+K+ IT+GL+YSLATGNWGDQKKA RAGVSQVLNR TF+S
Sbjct: 121 YMQKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSTRAGVSQVLNRYTFSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+A+PRQLHNT WG +CPAETPEG A GLVKNL+L++ +SVG+
Sbjct: 181 TLSHLRRTNTPIGRDGKIARPRQLHNTHWGFVCPAETPEGQACGLVKNLSLLSGVSVGTP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
+PI+ FL EW ME LE+ P A +AT+IFVNG WVG+H P + T++ LRR+ DI
Sbjct: 241 SNPIVCFLSEWGMEPLEDYVPHAAPNATRIFVNGVWVGVHTXPGAIAXTMKTLRRKGDI- 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-----GSLLLKKRHIDNLKERDYNNYG 606
+EVSI RDIR +E+RI TDAGR+ RPL E+ G L + K ++ + +
Sbjct: 300 SAEVSITRDIRSKELRILTDAGRVYRPLFXVEHEGPNKGQLKVTKDLVNTVIAQQEEEAI 359
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
V+ + ++ID W+ V++GV+EYID EEET MIAMS
Sbjct: 360 GDEDVKGDMEQHID-----------WEHFVKNGVIEYIDGEEEETVMIAMS 399
>gi|45545317|gb|AAS67506.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Ceramothyrium linnaeae]
Length = 936
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 234/508 (46%), Positives = 307/508 (60%), Gaps = 48/508 (9%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V +F + + + EIRS +E +R S + R
Sbjct: 1 SEKVLIAQERSAGNIVQIFQKAAPAPFTHLAEIRSVIEKGARMMSQCTAKLYRRV-DGPD 59
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
S I I LPY+KQ+IP+ IVFRAL V+D DILE I +D D EMM+M+ SL E
Sbjct: 60 GSKIENPIRVQLPYVKQDIPLAIVFRALDIVSDTDILEKICFDQRDQEMMDMLMGSLQEG 119
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
IQ ++A ++I RG P + R K+A +IL KE LPH+G + +KA+FLGYM
Sbjct: 120 QPIQGADLARDYIARRGNVPSLKSHERQKHAIDILTKEFLPHIGQTSDATARKAFFLGYM 179
Query: 349 VHRLLLASLGRRELDDRDHY---------------VRM-----------YAQKFIDRGKD 382
V+R+L +LGR E DDRDH RM Y QK ++ G+
Sbjct: 180 VNRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRMQLDKATKDFFRYMQKRVESGQT 239
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
++ K I+T+GL+YSLATGNWGDQKK +A+AGVSQVL+R TFAS+LSHLRR N+P
Sbjct: 240 IAIKAGWKPNIVTNGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAP 299
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GK+AKPRQLHNT WG +CPAETPEG A GLVKNLALM+ ++ +P+ ++ E
Sbjct: 300 IGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLALMSMVTNHYDTAPLQSYILEK 359
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVG-IHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
++E LE+ P ATK+FVNG W I +DP+ L+ R LRR+ I +EVS++ DI
Sbjct: 360 NVEALEDWEPHLNPQATKVFVNGVWFAVILKDPKFLVDHFRMLRRR-GTIDTEVSLVWDI 418
Query: 562 RDREIRIHTDAGRICRPLLIAE-------NGSLLLKKRHIDNLKERDYN----------- 603
RD+E +I D+GRI RPL I E +G+L+L K HI L E Y+
Sbjct: 419 RDKEFKISGDSGRIIRPLFIVETDRSSDNHGNLVLNKEHIAKLDETAYHMEQEMGEPADG 478
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W L+ GV+EY+D EEET MI M
Sbjct: 479 YYRWLDLLADGVIEYLDAEEEETVMIVM 506
>gi|262302321|gb|ACY43753.1| RNA polymerase subunit 1 [Hanseniella sp. 'Han2']
Length = 233
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/218 (89%), Positives = 206/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
H ARAGVSQVLNRLT+AS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HMARAGVSQVLNRLTYASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKK+H
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LKER+YNNY WQ LV S VVEYIDT+EEET M+AM
Sbjct: 181 IEMLKEREYNNYXWQDLVASSVVEYIDTMEEETVMLAM 218
>gi|262302325|gb|ACY43755.1| RNA polymerase subunit 1 [Hutchinsoniella macracantha]
Length = 236
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/234 (85%), Positives = 212/234 (90%), Gaps = 1/234 (0%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSM+NLEEIAPSAIADATKIFVNGCWVGIH+D
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMDNLEEIAPSAIADATKIFVNGCWVGIHKD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PE LM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPL+I ENG LLL KR+
Sbjct: 121 PEHLMETLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLMIVENGRLLLNKRN 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV-LVQSGVVEYIDT 646
ID LK+R+Y NY WQ LV G+VEYIDT+EEETTMIAM L Q +EY T
Sbjct: 181 IDMLKDREYTNYSWQDLVAHGLVEYIDTMEEETTMIAMSPYELNQDKELEYCTT 234
>gi|157814078|gb|ABV81784.1| putative DNA-directed RNA polymerase II subunit 2 [Limulus
polyphemus]
Length = 235
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/218 (88%), Positives = 207/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQLHN+LWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI T+AGRICRPLLI EN LLLKK H
Sbjct: 121 PDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIFTEAGRICRPLLIVENQKLLLKKHH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LK+R++NNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 181 IDMLKKREFNNYSWQDLVSSGVVEYIDTLEEETIMLAM 218
>gi|262302353|gb|ACY43769.1| RNA polymerase subunit 1 [Neogonodactylus oerstedii]
Length = 236
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/218 (88%), Positives = 205/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PI+EFLEEWSMENLEEIAPS+I DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPIMEFLEEWSMENLEEIAPSSIHDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEV ++RDIRD+EIRI+TDAGRICRPLL+ EN LLLKKRH
Sbjct: 121 PEQLMVTLRKLRRQMDIIVSEVCMVRDIRDKEIRIYTDAGRICRPLLVVENCKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNN+ WQ LV SGVVEY+D EEET MIAM
Sbjct: 181 IDLLKEREYNNFSWQDLVASGVVEYVDCAEEETIMIAM 218
>gi|45545319|gb|AAS67507.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Coccodinium bartschii]
Length = 940
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 233/512 (45%), Positives = 305/512 (59%), Gaps = 52/512 (10%)
Query: 170 SEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF + + + + EIRS ++ SR S V + R +
Sbjct: 1 SEKVLIAQERSAGNIVQVFQKVALAPFTHLAEIRSVIDKGSRMMSQCTVKLFRRA-EGPD 59
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+ I I LPY+KQ+IP++IVFRAL V+D DILE I +D D EMM+M+ SL E
Sbjct: 60 GTKIENPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEG 119
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
IQ +A +FI RG + G+ R K A +IL KE LPH+G + KKA+FLGYM
Sbjct: 120 QPIQSAELARDFIARRGNQSGLKAGDRQKQALDILVKEFLPHIGQTPDAAAKKAFFLGYM 179
Query: 349 VHRLLLASLGRRELDDRDHY---------------VRM-----------YAQKFIDRGKD 382
V R+L +LGR E DDRDH RM Y ++ I+ G
Sbjct: 180 VQRMLKCALGRTEPDDRDHLGKKRLDLSGPLMANLFRMKLDTATKDFFNYMKRRIEAGAG 239
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
F+++ K IIT+GL+YSLATGNWGDQKK +A+AGVSQVL+R TFAS+LSHLRR N+P
Sbjct: 240 FSIKAGFKPGIITNGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAP 299
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GK+AKPRQLHNT WG +CPAETPEG A GLVKNL+LM ++ +P++ ++ E
Sbjct: 300 IGREGKIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMTMVTPSRDTTPLMTYILEK 359
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVG-IHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
++E LEE P ATK+F NG W I RDP+ L+ R LRR+ I ++S++ DI
Sbjct: 360 NVEALEEWEPRLNPQATKVFANGVWFAVILRDPKFLVDHFRSLRRK-GTIEPDISLVWDI 418
Query: 562 RDREIRIHTDAGRICRPLLIAE-------NGSLLLKKRHIDNLKERD------------- 601
R++E +I D GRI RPL + + +G L L K HI L+E
Sbjct: 419 REKEFKISGDIGRIIRPLFVVDTDKASPTHGHLKLTKEHILRLQESKAYKENPDQAPAGW 478
Query: 602 --YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N+Y W LV GVVE++D EEE MI M
Sbjct: 479 SMANDYNWFALVNEGVVEFLDAEEEEQAMIIM 510
>gi|396941841|gb|AFN89638.1| RNA polymerase II, partial [Hanseniaspora valbyensis]
Length = 809
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/411 (49%), Positives = 277/411 (67%), Gaps = 33/411 (8%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E FVIQ++ AL+FIG RGA G+ KE+RI+Y ++ILQKE +PH+ +
Sbjct: 1 LEMLKPCVEEGFVIQDRETALDFIGRRGAALGIKKEKRIQYVKDILQKEFIPHITRKEGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHYVR--------MYAQKF------------- 376
E +KA+FLGYMV+RLLL +L R++ DDRDH+ + + AQ F
Sbjct: 61 ENRKAFFLGYMVNRLLLCALDRKDQDDRDHFGKKRLDLGGPLLAQLFRTLFKKVTRDIFR 120
Query: 377 -----IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
++ GKDF L+ AIK + IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 121 VMQRSVEEGKDFILKTAIKHQTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSGISVGSD 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
P PI+ +L+E+ +E LE+ P + D +++FVNG W GIHR+PE+L+ LRR ++
Sbjct: 241 PEPIIAYLKEFGLEPLEDYVPYKLPDVSRVFVNGVWHGIHRNPERLITDFINLRRS-GVL 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAE------NGSLLLKKRHIDNLKERDYNNY 605
SE++I+RDIR++EIR TDAGR+ RPL + + N L+++KRHI L + + Y
Sbjct: 300 SSEIAIVRDIREKEIRFLTDAGRVYRPLYVVDTNPETGNKELVIRKRHILKLVQAQSSEY 359
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+ D + W LV G+VEY+D EEET +IAM
Sbjct: 360 TVDEMSDDDEDGLSDGENDNDGQPWTWSTLVSKGMVEYLDAEEEETILIAM 410
>gi|262302297|gb|ACY43741.1| RNA polymerase subunit 1 [Carcinoscorpius rotundicauda]
Length = 235
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/218 (88%), Positives = 206/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQLHN+LWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQPSPILEFLEEWSMENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TLRKLRRQMDIIVSEVS++RDIRDREIRI T+AGRICRPLLI EN LLLKK H
Sbjct: 121 PDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIFTEAGRICRPLLIVENQKLLLKKHH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LK+R++NNY WQ LV SGVVEYIDTLEEET M+ M
Sbjct: 181 IDMLKKREFNNYSWQDLVSSGVVEYIDTLEEETIMLTM 218
>gi|262302303|gb|ACY43744.1| RNA polymerase subunit 1 [Dinothrombium pandorae]
Length = 235
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/233 (84%), Positives = 211/233 (90%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQLHN+LWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI+D+TKIFVNGCWVGIHR+
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAISDSTKIFVNGCWVGIHRE 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+ LM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKK+H
Sbjct: 121 PDLLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKQH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
I+ LKER+YNNY W LV SGVVEYIDTLEEET MIAM +Q + Y T
Sbjct: 181 IEMLKEREYNNYSWHDLVASGVVEYIDTLEEETVMIAMTPDDLQDTEMTYCST 233
>gi|262302309|gb|ACY43747.1| RNA polymerase subunit 1 [Eurytemora affinis]
Length = 237
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/218 (88%), Positives = 207/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVG+ PSPILEFLEEWSMENLEEIAPS+IADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGNTPSPILEFLEEWSMENLEEIAPSSIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDII +EVS+IRDIRDREIRI+TDAGRICRPLLI E+ LL+K RH
Sbjct: 121 PEQLMTTLRKLRRQMDIINAEVSMIRDIRDREIRIYTDAGRICRPLLIVEDCKLLMKSRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER++NNY WQ LV SGVVEYIDT+EEETTMIA+
Sbjct: 181 IDLLKEREFNNYQWQDLVASGVVEYIDTMEEETTMIAV 218
>gi|396941805|gb|AFN89620.1| RNA polymerase II, partial [Candida boidinii]
Length = 783
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/414 (51%), Positives = 274/414 (66%), Gaps = 41/414 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ Q VAL+FIG RG G+ + +RI+YA++ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQTQEVALDFIGRRGNAIGIPRNKRIQYAKDILQREFLPHISQDSGF 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAY+LGYMV+RLLL +L R+E DDRDH+ +
Sbjct: 61 ETNKAYYLGYMVNRLLLCALERKEADDRDHFGKKRLDLAGPLLAGLFRVLFRKLTRDIYR 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+R +DFN+ A+K+ IT GL+YSLATGNWG+QKKA ++AGVSQVLNR T+AS
Sbjct: 121 YMQRCIERSEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYAS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+ IGRD KLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVGS
Sbjct: 181 TLSHLRRTNTSIGRDSKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTGISVGSP 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E L++ P AT++F+NG WVG+ RDP L+ T+R+LRR I
Sbjct: 241 SEPITYLLEEWGLEPLQDYEPQH-KHATRVFLNGNWVGVTRDPAMLVQTMRQLRRTGSI- 298
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVS+IRDIR+RE +I TDAGR+ RPL I E+ G L L K H + +R+
Sbjct: 299 SPEVSLIRDIREREFKIFTDAGRVYRPLFIVEDNEQHERKGELKLTKSHCRKILDREI-- 356
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
++V Q G E D L + W LV +G++EY+D EEETT+IAMSP
Sbjct: 357 --YEV-SQEGYDENGDPLPPIQSTFG-WDYLVTNGIIEYLDAEEEETTLIAMSP 406
>gi|157814084|gb|ABV81787.1| putative DNA-directed RNA polymerase II subunit 2 [Narceus
americanus]
Length = 237
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/220 (89%), Positives = 206/220 (93%), Gaps = 2/220 (0%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRR+NSPIGR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICPAETPEGGA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQP+PILEFLEEWSMENLEEIAPSAIADATKIFVNG WVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGSWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGRICRPLLI EN LLLKK+H
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKQH 180
Query: 594 IDNLKER--DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LK+R DYN YGW LV SGVVEYIDT+EEET MI+M
Sbjct: 181 IDMLKQRDCDYNTYGWHDLVASGVVEYIDTMEEETVMISM 220
>gi|396941847|gb|AFN89641.1| RNA polymerase II, partial [Pichia membranifaciens]
Length = 785
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/413 (49%), Positives = 274/413 (66%), Gaps = 39/413 (9%)
Query: 278 MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
+EM+KP ++E F+IQ Q VAL++IG RG G+ +ERRI++A++ILQ+E LPH+
Sbjct: 1 LEMLKPCIEEGFLIQSQEVALDYIGRRGNAVGIKRERRIQFAKDILQREFLPHISQDGGH 60
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHY--------------------------VRM 371
ET KAYF+GY+++RLLL +L R+E DDRDH+ +
Sbjct: 61 ETNKAYFMGYIINRLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYK 120
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ I+ G+DFN+ A+K+ IT GL+YSLATGNWG+QKKA ++AGVSQVLNR T++S
Sbjct: 121 YMQRCIEHGEDFNIVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYSS 180
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 181 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSA 240
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI LEEW +E + + P +T++F+NG WVG HRDP L+ T+R+LRR I
Sbjct: 241 SEPITYLLEEWGLEPISDYDPQEHKLSTRVFLNGDWVGTHRDPGMLVDTMRQLRRS-GTI 299
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
+EVS+IR+IR+RE +I TDAGR+ RPL I ++ G L L K H + +R+
Sbjct: 300 SAEVSLIRNIREREFKIFTDAGRVYRPLFIVDDDPDSERKGGLKLTKEHCRRILDREIE- 358
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
++ G E D L+ I W L+ GVVEY+D EEET +IAMS
Sbjct: 359 ---EIPQDDGFDENGDPLDP-IQRIYGWDSLLAEGVVEYLDAEEEETVLIAMS 407
>gi|396941845|gb|AFN89640.1| RNA polymerase II, partial [Saturnispora dispora]
Length = 764
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/400 (51%), Positives = 267/400 (66%), Gaps = 45/400 (11%)
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQ Q VAL+FIG RG G+ ++RRI++A++ILQ+E LPH+ ET KAYFLGY+++
Sbjct: 1 IQSQEVALDFIGRRGNATGIKRDRRIQFAKDILQREFLPHISQDSGHETNKAYFLGYVIN 60
Query: 351 RLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFN 384
RLLL +L R+E DDRDH+ + Y Q+ I+RG+DFN
Sbjct: 61 RLLLCALERKEQDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIFRYMQRCIERGEDFN 120
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
+ A+K+ IT GL+YSLATGNWG+QKKA ++AGVSQVLNR T+AS+LSHLRR N+PIG
Sbjct: 121 IVSAVKSTTITSGLKYSLATGNWGEQKKAMSSKAGVSQVLNRYTYASTLSHLRRTNTPIG 180
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
RDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+Q PI LEEW +
Sbjct: 181 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTQSEPITYLLEEWGL 240
Query: 505 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR 564
E + + P D+ ++F+NG WVG HRDP L+ T+R+LRR I SEVS++RDIR++
Sbjct: 241 EPMSDYDPIKHKDSIRVFLNGNWVGTHRDPSLLVDTMRQLRRN-GTISSEVSLVRDIREK 299
Query: 565 EIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVE 617
E +I TDAGR+ RPL I ++ G L L K H + +R+ V+E
Sbjct: 300 EFKIFTDAGRVYRPLFIVDDDEDSETKGGLKLTKEHCRKILDRELE-----------VLE 348
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
D EE+ T W+ LV +GVVEY+D EEET +IAMS
Sbjct: 349 ADDEDEEQQTREFGWESLVSNGVVEYLDAEEEETVLIAMS 388
>gi|262302287|gb|ACY43736.1| RNA polymerase subunit 1 [Armadillidium vulgare]
Length = 236
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/218 (87%), Positives = 205/218 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQP+PILEFLEEWSMENLEEIAPS+I DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQPAPILEFLEEWSMENLEEIAPSSIHDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDI+VSEV ++RDIRD+EIRI+TDAGRICRPLL+ EN LLLKK+H
Sbjct: 121 PEQLMVTLRKLRRQMDIVVSEVCMVRDIRDKEIRIYTDAGRICRPLLVVENCKLLLKKKH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YN++ WQ LV SGVVEYID EEET MIAM
Sbjct: 181 IDLLKEREYNSFSWQDLVASGVVEYIDCSEEETIMIAM 218
>gi|262302387|gb|ACY43786.1| RNA polymerase subunit 1 [Streptocephalus seali]
Length = 235
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/218 (88%), Positives = 204/218 (93%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGS P+PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSPPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDI+DREIRI+TDAGRICRPLLI EN LLLK+ H
Sbjct: 121 PEQLMSTLRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGRICRPLLIVENQRLLLKRTH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I LK+R+Y N+ W LV SGVVEY+DTLEEET MIAM
Sbjct: 181 IQQLKDREYGNFVWNDLVGSGVVEYVDTLEEETAMIAM 218
>gi|396941913|gb|AFN89674.1| RNA polymerase II, partial [Peterozyma toletana]
Length = 775
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/402 (51%), Positives = 271/402 (67%), Gaps = 40/402 (9%)
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ++ AL+FIG RG G+ +E+RI+YA++ILQKE+LPH+ + ET+KA+FLGY
Sbjct: 1 AFVIQDRETALDFIGRRGNALGIRREKRIQYAKDILQKELLPHITQEEGFETRKAFFLGY 60
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MV+RLLL +L R+E DDRDH+ + Y Q+ ++ +
Sbjct: 61 MVNRLLLCALERKEQDDRDHFGKKRLDLAGPLMANLFRILFRKLTKDIFRYMQRCVETNR 120
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
DFNL LA+K IT GL+YSLATGNWG+QKKA ARAGVSQVLNR T++S+LSHLRR N+
Sbjct: 121 DFNLTLAVKANTITSGLKYSLATGNWGEQKKAMTARAGVSQVLNRYTYSSTLSHLRRTNT 180
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS I+ FLEE
Sbjct: 181 PIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPSDTIIFFLEE 240
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W M+ +E+ P +A ++FVNG WVG H DP + +R+LRR +I EVSI+RDI
Sbjct: 241 WGMQAVEDFTPYKDPEAVRVFVNGVWVGTHSDPTSMDNNIRELRRGGNI-SPEVSIVRDI 299
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSG 614
R++E +I TDAGR+ RPL I E+ G L LKK HI +L + + + +
Sbjct: 300 REKEFKIFTDAGRVYRPLFIVEDDQDSPNKGDLKLKKEHIYSLLNSNEEDQYLKEENED- 358
Query: 615 VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
D +EE+ I+ W LV++G++EY+D EEET MIAM
Sbjct: 359 -----DEDDEESRRISGWSSLVKNGIIEYVDAEEEETIMIAM 395
>gi|262302277|gb|ACY43731.1| RNA polymerase subunit 1 [Ammothea hilgendorfi]
Length = 236
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/218 (88%), Positives = 204/218 (93%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVL+RLT+ S+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLSRLTYVSTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGQA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWS ENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSTENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLMGTLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLK+RH
Sbjct: 121 PEQLMGTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQRLLLKRRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LK R+YNN WQ LV GVVEYIDTLEEET M+AM
Sbjct: 181 IEMLKNREYNNNSWQDLVGIGVVEYIDTLEEETIMLAM 218
>gi|157814086|gb|ABV81788.1| putative DNA-directed RNA polymerase II subunit 2 [Nebalia
hessleri]
Length = 237
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/218 (87%), Positives = 203/218 (93%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALM+YISVGSQ +PILEFLEEWSME+LEEIAPS I DATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMSYISVGSQCAPILEFLEEWSMESLEEIAPSHIHDATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMD+IVSEV ++RDIRD+EIRI+TDAGRICRPLL+ E+ LLLKK H
Sbjct: 121 PEQLMITLRKLRRQMDVIVSEVCMVRDIRDKEIRIYTDAGRICRPLLVVESSKLLLKKNH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID LKER+YNN+ WQ LV SGVVEYID EEETTMIAM
Sbjct: 181 IDLLKEREYNNFSWQDLVASGVVEYIDCAEEETTMIAM 218
>gi|262302275|gb|ACY43730.1| RNA polymerase subunit 1 [Achelia echinata]
Length = 236
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/218 (87%), Positives = 203/218 (93%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVL+RLT+ S+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLSRLTYVSTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGQA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWS ENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSTENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLK+RH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKRRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LK R+YNN WQ LV GVVEYIDTLEEET M+AM
Sbjct: 181 IEMLKNREYNNNSWQDLVGIGVVEYIDTLEEETVMLAM 218
>gi|157814098|gb|ABV81794.1| putative DNA-directed RNA polymerase II subunit 2 [Tanystylum
orbiculare]
Length = 236
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/218 (87%), Positives = 204/218 (93%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVL+RLT+ S+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLSRLTYVSTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWS ENLEEIAPSAIA+ATKIFVNGCW+GIH+D
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSTENLEEIAPSAIAEATKIFVNGCWIGIHKD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLK+RH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQRLLLKRRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LK R+YNN WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 181 IEMLKNREYNNNSWQDLVGSGVVEYIDTLEEETIMLAM 218
>gi|262302295|gb|ACY43740.1| RNA polymerase subunit 1 [Nymphon unguiculatum-charcoti complex sp.
SEM-1997]
Length = 236
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/218 (87%), Positives = 203/218 (93%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVL+RLT+ S+LSHLRR+NSPIGRDGKLAKPRQLHN+LWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLSRLTYVSTLSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWS ENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSTENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDIIVSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKKRH
Sbjct: 121 PEQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKRH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LK R+YNN WQ LV GVVEYIDTLEEET M+AM
Sbjct: 181 IEMLKNREYNNNSWQDLVGIGVVEYIDTLEEETIMLAM 218
>gi|157814080|gb|ABV81785.1| putative DNA-directed RNA polymerase II subunit 2 [Mesocyclops
edax]
Length = 237
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/217 (87%), Positives = 205/217 (94%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQAR GVSQVLNRLT+AS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA
Sbjct: 1 HQARPGVSQVLNRLTYASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAY+SVG+ PSPILEFLEEWSMENLEEIAPS+IADATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYVSVGNTPSPILEFLEEWSMENLEEIAPSSIADATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDII +EVS+IRDIRDREIRI+TDAGRICRPLLI E+ LL+KK H
Sbjct: 121 PEQLMVTLRKLRRQMDIINAEVSMIRDIRDREIRIYTDAGRICRPLLIVEDCRLLMKKNH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
I+ LK+R++NNY WQ LV SGVVEYIDT+EEETTMIA
Sbjct: 181 IEMLKDREFNNYQWQDLVASGVVEYIDTMEEETTMIA 217
>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma
cruzi]
Length = 1186
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 272/697 (39%), Positives = 387/697 (55%), Gaps = 63/697 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEF---IQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
E W +I+++F EKGLV QQ+DS+++F I + ++E P+ D Q E T TE E
Sbjct: 37 EDIWEIISSFFREKGLVHQQIDSYNDFLLRIPRMARSLLEVVPRQDEQFEPG-TQTETE- 94
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPS---PMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
P +Y L E + + P+H S P+ PNE RLR+LTY A V + V R E
Sbjct: 95 PDQYRLSLEDVVIGNPSHEVSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSRE 154
Query: 118 E-PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
E P T Q +G+IPIML+S C L + +L LNECP D GGYF+I+G+EKVLIA
Sbjct: 155 EQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEKVLIA 214
Query: 177 QEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
QE+ A N VY FS + EI+S +E S TL + M KK G
Sbjct: 215 QERQAANHVYAFSRQK---GLLCEIKSIVEGSLNKPRTLQILM------PYKKKGPGHGY 265
Query: 237 IAILPYIKQE---IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ- 292
+L + Q IP+ ++FRAL +D++IL+ ++ D D M+EM++ S+++A +Q
Sbjct: 266 ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQI 325
Query: 293 -EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ AL FIG R + ++E + A+ +L +++LPH+GV + K F+GYMVHR
Sbjct: 326 FTRDEALWFIGKRLGKQD-SRENLQRDAQGLLMRDLLPHMGVDCAADRSKCLFIGYMVHR 384
Query: 352 LLLASLGRRELDDRD---------------------------HYVRMYAQKFIDRGKDFN 384
LLL +LGRRE DRD V+ +RG +
Sbjct: 385 LLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMVKTVHDYSTNRGGVVS 444
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
+ +++ITDGLR LATGN+GD K + + GV+Q LNRLT++SSLS+LRR+ +PI
Sbjct: 445 FGRILHSRLITDGLRRCLATGNFGDMKSGN-IKTGVAQTLNRLTYSSSLSNLRRIQNPIS 503
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
K KPR LH T WG ICP ETPEG ++GL+KNLALM IS GS + +++ ++ +
Sbjct: 504 ASSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGVVQAVQA-RI 562
Query: 505 ENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
I +AD ++FVNG +G+HRDPE+L+ LR RR + + +EVSI+RDIR
Sbjct: 563 TGFHSIDLPGLADVRVARVFVNGTLIGVHRDPERLLRELRARRRGGE-LSNEVSIVRDIR 621
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG-----WQVLVQSGVVE 617
DREIR+ +D GR RPL + E + L+K I L E G W +++ G VE
Sbjct: 622 DREIRVFSDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTLGGKREISWNRIIKKGYVE 681
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
ID EE++ +IAM V Y E + +MI
Sbjct: 682 LIDCEEEDSLLIAMTMTEVSKNY--YYSHCEMDPSMI 716
>gi|407404199|gb|EKF29761.1| DNA-directed RNA polymerase III subunit, putative, partial
[Trypanosoma cruzi marinkellei]
Length = 1194
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 271/697 (38%), Positives = 386/697 (55%), Gaps = 63/697 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEF---IQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
E W +I+++F EKGLV QQ+DS+++F I + ++E P+ D Q E T TE E
Sbjct: 45 EDIWEIISSFFREKGLVHQQIDSYNDFLLRIPRMARSLLEIVPRQDEQFEPG-TQTETE- 102
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPS---PMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
P +Y L E + + P+H S P+ PNE RLR+LTY A V + V R E
Sbjct: 103 PDQYRLSLEDVVIGNPSHEFSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSRE 162
Query: 118 E-PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
E P T Q +G+IPIML+S C L + +L LNECP D GGYF+I+G+EKVLIA
Sbjct: 163 EQPYRTFLQNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEKVLIA 222
Query: 177 QEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
QE+ A N VY FS + EI+S +E S TL + M KK G
Sbjct: 223 QERQAANHVYAFSRQK---GLLCEIKSIVEGSLNKPRTLQILM------PYKKKGPGHGY 273
Query: 237 IAILPYIKQE---IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ- 292
+L + Q IP+ ++FRAL +D++IL+ ++ D D M+EM++ S+++A +Q
Sbjct: 274 ENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQI 333
Query: 293 -EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ AL FIG R + ++E + A+ +L +++LPH+GV + K F+GYMVHR
Sbjct: 334 FTRDEALWFIGKRLGKQD-SRENLQREAQALLMRDLLPHMGVDCAADRGKCLFIGYMVHR 392
Query: 352 LLLASLGRRELDDRD---------------------------HYVRMYAQKFIDRGKDFN 384
LLL +LGRRE DRD ++ +RG
Sbjct: 393 LLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMIKTVHDYSTNRGGVVG 452
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
+ +++ITDGLR LATGN+GD K + + GV+Q LNRLT++SSLS+LRR+ +PI
Sbjct: 453 FGRILHSRLITDGLRRCLATGNFGDMKSGN-IKTGVAQTLNRLTYSSSLSNLRRIQNPIS 511
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
K KPR LH T WG ICP ETPEG ++GL+KNLALM IS GS + +++ ++ +
Sbjct: 512 ASSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGVVQAVQA-RI 570
Query: 505 ENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
I +AD ++FVNG +G+HRDPE+L+ LR RR + + +EVSI+RDIR
Sbjct: 571 TGFHSIDLPGLADVRVARVFVNGTLIGVHRDPERLLRELRARRRGGE-LSNEVSIVRDIR 629
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG-----WQVLVQSGVVE 617
DREIR+ +D GR RPL + E + L+K I L E G W +++ G VE
Sbjct: 630 DREIRVFSDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTPGGKREISWNRVIKKGYVE 689
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMI 654
ID EE++ +IAM V Y E + +MI
Sbjct: 690 LIDCEEEDSLLIAMTTTEVSKNY--YYSHCEMDPSMI 724
>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma
vivax Y486]
Length = 1186
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 269/674 (39%), Positives = 383/674 (56%), Gaps = 61/674 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEF---IQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
E W +I+++F EKGLV QQ+DS+++F I + ++E P+ D Q E +VE
Sbjct: 37 EDVWEIISSFFREKGLVHQQIDSYNDFLLRIPRMARSLLEVVPRQDSQFEPG-MQLDVE- 94
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPS---PMMPNEARLRNLTYSAPLYVDITKTVVRQGE 117
P +Y L E + + P+H S P+ PNE RLR++TY A V + V R E
Sbjct: 95 PDQYRLSLEDVVVGNPSHETSGFSRQEMHPLFPNECRLRDMTYDANAQVTLGIRVYRSRE 154
Query: 118 E-PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
E P T Q +G+IPIML+S C L + +L LNECP D GGYFIING+EKVL+A
Sbjct: 155 EQPYRTFLQNMELGRIPIMLKSIRCNLLYKDEDELPRLNECPHDQGGYFIINGTEKVLVA 214
Query: 177 QEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
QE+ A N VY F+ EI+S +E S T + M KK+ G
Sbjct: 215 QERQAANHVYAFTRPK---GLLCEIKSIVEGSLNKPRTFQIIM------PYKKTGPGHGY 265
Query: 237 IAILPYIKQE---IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ- 292
+L + Q IP+ ++FRAL +DR+IL+ ++ D D M+EM++ S+++A +Q
Sbjct: 266 ENLLCRVAQMDELIPLFVLFRALDMGSDREILQTVVPDLKDAAMLEMLRGSMEDASTLQI 325
Query: 293 -EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
++ AL FIG R R ++E + A+ +L +++LPH+GV + K F+GYMVHR
Sbjct: 326 FTRDEALWFIGKRLGRQD-SRENLQREAQGLLMRDLLPHMGVDCTADRGKCLFIGYMVHR 384
Query: 352 LLLASLGRRELDDRD-------------------HY---VRMYAQKFI-----DRGKDFN 384
LLL +LGRRE DRD H+ VR K + RG +
Sbjct: 385 LLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNHFLVQVRKEMSKTVHDYSTSRGGVVS 444
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
+ +++ITDG+R LATGN+GD K + + GVSQ LNRLT++SSLS+LRR+ +PI
Sbjct: 445 FAKILHSRLITDGMRRCLATGNFGDLKSGN-IKTGVSQTLNRLTYSSSLSNLRRIQNPIS 503
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
K +PR LH T WG ICP ETPEG ++GL+KNLALM IS GS + + + ++ +
Sbjct: 504 ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTSVAQTVQA-RI 562
Query: 505 ENLEEIAPSAIADA--TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+ S +AD ++FVNG +G+HRDPE+L+ LR RR + + +EVSI+RDIR
Sbjct: 563 TGFHSVGLSDLADVRLARVFVNGTLIGVHRDPERLLRELRARRRGGE-LSNEVSIVRDIR 621
Query: 563 DREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG-----WQVLVQSGVVE 617
DREIR+ +DAGR RPL + E SL L+K + L E G W +++ G VE
Sbjct: 622 DREIRVFSDAGRCIRPLFVVEKSSLKLRKAGMGELLEPSRAPGGQRQISWNRVMKRGYVE 681
Query: 618 YIDTLEEETTMIAM 631
ID EE++ +IAM
Sbjct: 682 LIDCEEEDSLLIAM 695
>gi|432111605|gb|ELK34707.1| DNA-directed RNA polymerase II subunit RPB2 [Myotis davidii]
Length = 477
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/227 (84%), Positives = 204/227 (89%)
Query: 420 VSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 479
+ VLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG AVGLVKN
Sbjct: 67 IRSVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKN 126
Query: 480 LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMG 539
LALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+DPEQLM
Sbjct: 127 LALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMN 186
Query: 540 TLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKE 599
TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGRICRPLLI E LLLKKRHID LKE
Sbjct: 187 TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKE 246
Query: 600 RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
R+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 247 REYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 293
>gi|396941799|gb|AFN89617.1| RNA polymerase II, partial [Ogataea glucozyma]
Length = 774
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/403 (49%), Positives = 261/403 (64%), Gaps = 39/403 (9%)
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
F+ Q Q VAL++IG RG G+ +ERRI+YA++ILQ+E LPH+ ET KAYFLGY+
Sbjct: 1 FLXQSQEVALDYIGRRGNSIGIKRERRIQYAKDILQREFLPHISQDTGFETNKAYFLGYI 60
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R+E DDRDH+ + Y Q+ I+RG+D
Sbjct: 61 INRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGED 120
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN+ A+K+ I GL+YSLATG WG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 121 FNIVSAVKSTTIXSGLKYSLATGXWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 180
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LMA +SVGS PI LEEW
Sbjct: 181 IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMACVSVGSASEPITYLLEEW 240
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
+E L + P +AT++F+NG WVG HRDP L+ T+R+LRR I EVS+IRDIR
Sbjct: 241 GLEPLSDYEPQEHKNATRVFLNGNWVGTHRDPAMLVDTMRQLRRS-GTISPEVSLIRDIR 299
Query: 563 DREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSGV 615
+RE +I TDAGRI RPL I ++ G L L K H + +R+ + Q
Sbjct: 300 EREFKIFTDAGRIYRPLFIVDDDPDSEHKGELKLTKEHCRKILDREVEE-----IAQDEE 354
Query: 616 VEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ E + W L+ G++EY+D EEET +IAMSP
Sbjct: 355 FDEEGEPLEPIQRVYGWDSLLSGGIIEYLDAEEEETVLIAMSP 397
>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei
TREU927]
gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei]
gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1190
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 264/675 (39%), Positives = 384/675 (56%), Gaps = 63/675 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEF---IQMSVQRIVEDSPQIDLQAE-AQHTSTEVE 59
E W +I+++F EKGLV QQ+DS+++F I + ++E P+ D Q + H +E
Sbjct: 41 EDIWEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESE-- 98
Query: 60 TPPRYLLKFEQIYLSKPTHWEKDGSPS---PMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
P +Y L E + + P+H S + P+ PNE RLR+LTY A V + V R
Sbjct: 99 -PDQYRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSR 157
Query: 117 EE-PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
EE P T Q +G+IPIML+S C L + +L LNECP D GGYFI+NG+EKVLI
Sbjct: 158 EEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLI 217
Query: 176 AQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG-- 233
AQE+ A N VY F+ EI+S +E S TL + M KKS G
Sbjct: 218 AQERQAANHVYAFTRPK---GLLCEIKSIVEGSLNKPRTLQILM------PYKKSGPGHG 268
Query: 234 -QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+ ++ + + + IP+ ++FRAL +D++IL+ ++ D D M+EM++ S+++A ++
Sbjct: 269 YENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLE 328
Query: 293 --EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
++ AL FIG R + ++E + A+++L +++LPH+GV + K F+GYMVH
Sbjct: 329 IFTRDEALWFIGKRLGKQD-SRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVH 387
Query: 351 RLLLASLGRRELDDRD-----------------------HYVRMYAQKFID----RGKDF 383
RLLL +LGRRE DRD R AQ D RG
Sbjct: 388 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVV 447
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+ + ++ITDG+R LATGN+GD K + + GVSQ LNRLT++SSLS+LRR+ +PI
Sbjct: 448 SFGRILHNRLITDGMRRCLATGNFGDLKSGN-IKTGVSQTLNRLTYSSSLSNLRRIQNPI 506
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
K +PR LH T WG ICP ETPEG ++GL+KNLALM +S GS + +++ ++
Sbjct: 507 SASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQS-R 565
Query: 504 MENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ IA S +AD ++FVNG +G+H DPE+L+ LR RR + + +EVSI+RDI
Sbjct: 566 ITGFHSIALSDLADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGE-LSNEVSIVRDI 624
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG-----WQVLVQSGVV 616
RDREIR+ +D GR RPL + E + L+K I L E G W +++ G V
Sbjct: 625 RDREIRVFSDGGRCLRPLFVVEKSRIKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYV 684
Query: 617 EYIDTLEEETTMIAM 631
E ID EE++ +IAM
Sbjct: 685 ELIDCEEEDSLLIAM 699
>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1189
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 266/675 (39%), Positives = 382/675 (56%), Gaps = 63/675 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEF---IQMSVQRIVEDSPQIDLQAE-AQHTSTEVE 59
E W +I+++F EKGLV QQ+DS+++F I + ++E P+ D Q + H +E
Sbjct: 40 EDIWEIISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFDPGVHVESE-- 97
Query: 60 TPPRYLLKFEQIYLSKPTHWEKDGSPS---PMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
P +Y L E + + P+H S + P+ PNE RLR+LTY A V + V R
Sbjct: 98 -PDQYRLSLEDVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYRSR 156
Query: 117 EE-PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
EE P T Q +G+IPIML+S C L + +L LNECP D GGYFI+NG+EKVLI
Sbjct: 157 EEQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLI 216
Query: 176 AQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
AQE+ A N VY F+ EI+S +E S TL + M KKS G
Sbjct: 217 AQERQAANHVYAFTRPK---GLLCEIKSIVEGSLNKPRTLQILM------PYKKSGPGHG 267
Query: 236 IIAILPYIKQE---IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+L + Q IP+ ++FRAL +D++IL+ ++ D D M+EM++ S+++A ++
Sbjct: 268 YENLLCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTLE 327
Query: 293 --EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
++ AL FIG R + ++E + A+++L +++LPH+GV + K F+GYMVH
Sbjct: 328 IFTRDEALWFIGKRLGKQD-SRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVH 386
Query: 351 RLLLASLGRRELDDRD-----------------------HYVRMYAQKFID----RGKDF 383
RLLL +LGRRE DRD R AQ D RG
Sbjct: 387 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVV 446
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+ + ++ITDG+R LATGN+GD K + + GVSQ LNRLT++SSLS+LRR+ +PI
Sbjct: 447 SFGRILHNRLITDGMRRCLATGNFGDLKSGN-IKTGVSQTLNRLTYSSSLSNLRRIQNPI 505
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
K +PR LH T WG ICP ETPEG ++GL+KNLALM +S GS + +++ ++
Sbjct: 506 SASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQS-R 564
Query: 504 MENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ IA S +AD ++FVNG +G+H DPE+L+ LR RR + + +EVSI+RDI
Sbjct: 565 ITGFHSIALSDLADVRVARVFVNGTLIGVHGDPERLLRDLRARRRGGE-LSNEVSIVRDI 623
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG-----WQVLVQSGVV 616
RDREIR+ +D GR RPL + E + L+K I L E G W +++ G V
Sbjct: 624 RDREIRVFSDGGRCLRPLFVVEKSRIKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYV 683
Query: 617 EYIDTLEEETTMIAM 631
E ID EE++ +IAM
Sbjct: 684 ELIDCEEEDSLLIAM 698
>gi|89274910|gb|ABD65896.1| RNA polymerase II second largest subunit, partial
[Gloeocystidiellum porosum]
Length = 429
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/365 (54%), Positives = 258/365 (70%), Gaps = 31/365 (8%)
Query: 296 VALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA 355
+AL+FIG RG G+++ERR++YA+EILQKEMLPH+ +S+ E+KKAYF GYM+HRLLLA
Sbjct: 1 IALDFIGNRGTTVGLSRERRLRYAQEILQKEMLPHISMSEGSESKKAYFFGYMIHRLLLA 60
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
++ RRELDDRDH+ V Y QK ++ K+FNL LAI
Sbjct: 61 AMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVESHKEFNLNLAI 120
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K IT+GL+YSLATGNWGDQKK+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+
Sbjct: 121 KHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKI 180
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHN LVKNLALM+ ISVGS +P+++FLEEW +E+LEE
Sbjct: 181 AKPRQLHNXXXXXXXXXXXXXXXXXXLVKNLALMSTISVGSLSAPVIDFLEEWGLESLEE 240
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIH 569
A S+ TK+FVNG W+G+HRDP L+ T++KLRR+ D I EVSI+RD+R+RE+R++
Sbjct: 241 NAHSSTP-TTKVFVNGVWMGVHRDPGNLIKTIKKLRRK-DDIHPEVSIVRDVRERELRLY 298
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKE--RDYN-NYGWQVLVQSGVVEYIDTLEEET 626
TDAGR+CRPL I EN L L+K+HI L + RD + W LV+SGV+E +D EEET
Sbjct: 299 TDAGRVCRPLFIVENQQLALQKKHIKWLNQGYRDTGEEFKWNHLVKSGVIELLDAEEEET 358
Query: 627 TMIAM 631
MI M
Sbjct: 359 VMICM 363
>gi|262302317|gb|ACY43751.1| RNA polymerase subunit 1 [Endeis laevis]
Length = 236
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/218 (86%), Positives = 202/218 (92%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVL+RLT+ S+LSHLRR+NSPIGRDGKLAKPRQLHN+LWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLSRLTYVSTLSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWS ENLEEIAPSAIA+ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSTENLEEIAPSAIAEATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDI+VSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLK+ H
Sbjct: 121 PEQLMITLRKLRRQMDIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQRLLLKRCH 180
Query: 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ LK R+YNN WQ LV GVVEYIDTLEEET M+AM
Sbjct: 181 IEMLKNREYNNNSWQDLVGMGVVEYIDTLEEETIMLAM 218
>gi|262302329|gb|ACY43757.1| RNA polymerase subunit 1 [Idiogaryops pumilis]
Length = 237
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/220 (85%), Positives = 202/220 (91%), Gaps = 2/220 (0%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQARAGVSQVLNRLT+AS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA ATKIFVNGCWVGIHRD
Sbjct: 61 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAGATKIFVNGCWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P+QLM TL KLRR+MDI+VSEVS++RDIRDREIRI+TDAGRICRPLLI EN LLLKK H
Sbjct: 121 PDQLMSTLXKLRREMDIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKKAH 180
Query: 594 IDNL--KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I+ L K R Y+ +GW LV +GVVEYIDT+EEET M+AM
Sbjct: 181 IEKLKGKGRGYSEFGWPDLVANGVVEYIDTMEEETIMLAM 220
>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 260/675 (38%), Positives = 384/675 (56%), Gaps = 63/675 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEF---IQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
E W VI+++F EKGLV QQ+DS+++F I + ++E P+ D Q E E+E+
Sbjct: 37 EDIWEVISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFEP---GVEMES 93
Query: 61 PP-RYLLKFEQIYLSKPTHWEKDGSPS---PMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
P +Y L E + + P+H S + P+ PNE RLR+LTY A V + V R
Sbjct: 94 EPDQYRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSR 153
Query: 117 E-EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
E +P T Q +G+IPIML+S C L + +L LNECP D GGYFI+NG+EKVLI
Sbjct: 154 EDQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLI 213
Query: 176 AQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
AQE+ A N VY F+ EI+S +E S TL + M KKS G
Sbjct: 214 AQERQAANHVYAFTRPK---GLLCEIKSIVEGSLNKPRTLQILM------PYKKSGPGHG 264
Query: 236 IIAILPYIKQE---IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+L + Q IP+ I+FRAL +D++IL+ ++ D D M+EM++ S+++A +Q
Sbjct: 265 YENLLCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQ 324
Query: 293 --EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
++ AL FIG R + +++ + A+++L +++LPH+GV + K F+GYMVH
Sbjct: 325 VFTRDEALWFIGKRLGKQD-SRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMVH 383
Query: 351 RLLLASLGRRELDDRD-------------------HYVRMYAQKFIDRGKDFNLELA--- 388
RLLL +LGRRE DRD ++ ++ DF+ +
Sbjct: 384 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGVV 443
Query: 389 -----IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+ +++ITDG+R LATGN+GD K + + GVSQ LNRLT++SSLS+LRR+ +PI
Sbjct: 444 SFGRILHSRLITDGMRRCLATGNFGDLKSGN-IKTGVSQTLNRLTYSSSLSNLRRIQNPI 502
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
K +PR LH T WG ICP ETPEG ++GL+KNLALM +S GS + +++ ++ +
Sbjct: 503 SASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRT 562
Query: 504 MENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
I + +AD ++FVNG +G+H DPE+L+ LR RR + + +EVS++RDI
Sbjct: 563 T-GFHSITLADLADVRVARVFVNGTLIGVHADPERLLRELRARRRGGE-LSNEVSVVRDI 620
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG-----WQVLVQSGVV 616
RDREIR+ +D GR RPL + E + L+K I L E G W +++ G V
Sbjct: 621 RDREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYV 680
Query: 617 EYIDTLEEETTMIAM 631
E +D EE++ +IAM
Sbjct: 681 ELVDCEEEDSLLIAM 695
>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 260/675 (38%), Positives = 384/675 (56%), Gaps = 63/675 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEF---IQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
E W VI+++F EKGLV QQ+DS+++F I + ++E P+ D Q E E+E+
Sbjct: 37 EDIWEVISSFFREKGLVHQQVDSYNDFLLRIPRMARSLLEIVPRQDDQFEP---GVEMES 93
Query: 61 PP-RYLLKFEQIYLSKPTHWEKDGSPS---PMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
P +Y L E + + P+H S + P+ PNE RLR+LTY A V + V R
Sbjct: 94 EPDQYRLSLEDVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSR 153
Query: 117 E-EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
E +P T Q +G+IPIML+S C L + +L LNECP D GGYFI+NG+EKVLI
Sbjct: 154 EDQPYRTFLQNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKVLI 213
Query: 176 AQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
AQE+ A N VY F+ EI+S +E S TL + M KKS G
Sbjct: 214 AQERQAANHVYAFTRPK---GLLCEIKSIVEGSLNKPRTLQILM------PYKKSGPGHG 264
Query: 236 IIAILPYIKQE---IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 292
+L + Q IP+ I+FRAL +D++IL+ ++ D D M+EM++ S+++A +Q
Sbjct: 265 YENLLCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTLQ 324
Query: 293 --EQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
++ AL FIG R + +++ + A+++L +++LPH+GV + K F+GYMVH
Sbjct: 325 VFTRDEALWFIGKRLGKQD-SRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMVH 383
Query: 351 RLLLASLGRRELDDRD-------------------HYVRMYAQKFIDRGKDFNLELA--- 388
RLLL +LGRRE DRD ++ ++ DF+ +
Sbjct: 384 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGVV 443
Query: 389 -----IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
+ +++ITDG+R LATGN+GD K + + GVSQ LNRLT++SSLS+LRR+ +PI
Sbjct: 444 SFGRILHSRLITDGMRRCLATGNFGDLKSGN-IKTGVSQTLNRLTYSSSLSNLRRIQNPI 502
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
K +PR LH T WG ICP ETPEG ++GL+KNLALM +S GS + +++ ++ +
Sbjct: 503 SASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRT 562
Query: 504 MENLEEIAPSAIAD--ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
I + +AD ++FVNG +G+H DPE+L+ LR RR + + +EVS++RDI
Sbjct: 563 T-GFHSITLADLADVRVARVFVNGTLIGVHADPERLLRELRARRRGGE-LSNEVSVVRDI 620
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG-----WQVLVQSGVV 616
RDREIR+ +D GR RPL + E + L+K I L E G W +++ G V
Sbjct: 621 RDREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYV 680
Query: 617 EYIDTLEEETTMIAM 631
E +D EE++ +IAM
Sbjct: 681 ELVDCEEEDSLLIAM 695
>gi|83415467|gb|ABC17941.1| RNA polymerase II second largest subunit, partial [Endogone
pisiformis]
Length = 720
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/282 (66%), Positives = 222/282 (78%), Gaps = 4/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V Y QK I+ ++FNL LA+K+ IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLASLFRMLFKKLTKDVSKYLQKCIESSREFNLTLAVKSNTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A Q++AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 AMQSKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+YISVGS +PI+EFL EW+MENLEE++ S I DATKIFVNG WVGIHR
Sbjct: 130 ACGLVKNLALMSYISVGSAAAPIIEFLGEWTMENLEELSASNIPDATKIFVNGVWVGIHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP +L+ TL++LRR +D I EVS++RDIR++E+R++TDAGR CRPL I E LL+KK
Sbjct: 190 DPAELVRTLKELRRCVD-ISPEVSVVRDIREKELRLYTDAGRCCRPLFIVEKQKLLIKKD 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L +E D +YGWQ LV G+VEYID EEET MI M
Sbjct: 249 HITKLAESREDDTQSYGWQDLVSGGLVEYIDAEEEETAMICM 290
>gi|396941813|gb|AFN89624.1| RNA polymerase II, partial [Cyniclomyces guttulatus]
Length = 753
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/414 (48%), Positives = 263/414 (63%), Gaps = 48/414 (11%)
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ A FIG G G+ KE+RI+ A++I KE PH + E++KA+ LGYM+
Sbjct: 1 VIQDRETAXXFIGRXGTALGIKKEKRIQXAKDIXXKEFXPHXXQLEXFESRKAFXLGYMI 60
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+RLLL +L R++ DDRDH+ + Y Q+ ++ DF
Sbjct: 61 NRLLLCALDRKDQDDRDHFGXKXXXLAGPLLGQLFKTLFRKLTRDIFRYMQRTVEEANDF 120
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
N++LAI K IT L+Y+LATGNWG QKKA +RAGVSQVLNR T++S+LSHLRR N+PI
Sbjct: 121 NMKLAIXAKTITSXLKYALATGNWGXQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 180
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ F EW
Sbjct: 181 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFXSEWG 240
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LE+ P DA+++ VNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR+
Sbjct: 241 MEPLEDYVPHQSPDASRVXVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIRE 299
Query: 564 REIRIHTDAGRICRPLLIAENGS------LLLKKRHIDNLKERDYNN----------YGW 607
+E++ TDAGR+ RPL I E+ L ++K HI+ L +Y + Y W
Sbjct: 300 KELKXFTDAGRVYRPLFIVEDDKELGHKELKVRKGHINKLLTTEYQDIEGGFEDVEEYTW 359
Query: 608 QVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPRLK 661
L+ G+VEYID EEET +IAM Q +E + EE T + + R+K
Sbjct: 360 TSLLNEGLVEYIDAEEEETILIAM-----QPEDLEPVQEDEEPTDDLDPAKRIK 408
>gi|294886743|ref|XP_002771831.1| DNA-directed RNA polymerase II subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239875631|gb|EER03647.1| DNA-directed RNA polymerase II subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 993
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/348 (54%), Positives = 239/348 (68%), Gaps = 33/348 (9%)
Query: 317 KYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRM----- 371
+YA+E+LQKE+LPH+GV +CE +KAYF+GYMVHRLLL LGR DDRDH+ +
Sbjct: 362 RYAKELLQKELLPHLGVKQYCEPRKAYFIGYMVHRLLLGQLGRIAEDDRDHFGKKRMDMA 421
Query: 372 -------YAQKF--------------IDRGKDFNLELAIKT-KIITDGLRYSLATGNWGD 409
+AQ F +D G+ F+L AI++ ITDGLRY LATGNWG
Sbjct: 422 GPLMAASFAQLFRKLVQDSKRILQRQVDSGRHFDLNSAIRSASSITDGLRYQLATGNWGI 481
Query: 410 QKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETP 469
K R GVSQVLNRLTF S++SHLRR+N+P+ R GKLAKPRQLHNT WGMICPAETP
Sbjct: 482 DKSGKSVRTGVSQVLNRLTFMSTMSHLRRMNTPLERSGKLAKPRQLHNTHWGMICPAETP 541
Query: 470 EGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVG 529
EG AVGLVKN+ALM I+VGS P+ + +FL EW +ENL+EI PS I TK+F+NG WVG
Sbjct: 542 EGQAVGLVKNIALMCTITVGSLPNVVYDFLNEWGLENLDEINPSQIKHMTKVFLNGQWVG 601
Query: 530 IHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE---NGS 586
+H D L TLR LRR+ DI EVSIIRD++ E+RI TD GR CRPL + + +
Sbjct: 602 MHADATMLCETLRDLRRKRDID-PEVSIIRDLQANELRIFTDGGRACRPLYVVQPPPSQK 660
Query: 587 LLLKKRHIDNLKERDYNNY--GWQVLVQSGVVEYIDTLEEETTMIAMW 632
L +K+ H++ L+ NN GW +LV+ G+VEYID EEET M+AM+
Sbjct: 661 LCIKREHVEALRRMLLNNEHGGWDMLVEEGLVEYIDAEEEETCMVAMF 708
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 132/209 (63%), Gaps = 14/209 (6%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL----QAEAQHTSTEV 58
Q+ W V +AYF +KGLV QQ+ SFD+F+ +Q IV++ P I + Q + V
Sbjct: 111 QDDSWAVADAYFKDKGLVSQQVGSFDDFVTYKMQEIVDECPPITIIPQNQVGWESEGARV 170
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV--VRQG 116
+L++F Q+ L+KPT E DG+ + + PN+ARLRNLTYS+P+YV++T+T +
Sbjct: 171 YMDSSFLVEFGQLSLNKPTVEEVDGAMTSLTPNQARLRNLTYSSPVYVNVTQTTYALADP 230
Query: 117 EEPVTTQ-------HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++P + + + K IG+IP+ML+S YC L T+R L E+ EC D GGYFIING
Sbjct: 231 DDPNSEKQLISEDSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIING 290
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAY 197
SEKVLIA E+MA N VY F K +KY +
Sbjct: 291 SEKVLIAMERMANNFVYCFQKKQPAKYTW 319
>gi|340500807|gb|EGR27654.1| RNA polymerase ii second largest subunit, putative
[Ichthyophthirius multifiliis]
Length = 1194
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 242/690 (35%), Positives = 371/690 (53%), Gaps = 86/690 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAE---AQHTSTEVET 60
+ CW +I++YF E L QQ++S+D FIQ Q + E +I Q + Q+ + E
Sbjct: 14 QDCWNIIDSYFQENNLCTQQINSYDNFIQSIPQIMEEQKIRIKPQNKYSLKQNNELDFEN 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
+Y++ FE+ + P++ ++ + P +AR+ +L YS L + I +V++ P
Sbjct: 74 T-QYIVSFEKPQKA-PSYNQR------IFPTQARISDLDYS--LEIKIPIKLVKETFNPE 123
Query: 121 TTQ--------HQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGS 170
T + K+ I IP M++S C L+GL+ + + EC D GGYFII G
Sbjct: 124 TGKLDVKNLVDPNKNVITLAHIPAMVQSKQCSLHGLSLQQRIQTGECKHDQGGYFIIKGQ 183
Query: 171 EKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
EKV+IAQE+MA N +YVF D + + EIRS + S + M KK
Sbjct: 184 EKVIIAQERMAYNFIYVFKQNDDRIPWIAEIRSICGKITGIQSKFIIKM--------KKK 235
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE---MMEMVKPSLDE 287
++ YI +IP+ I+F+AL + DR I+E+I +D E ME+++ SL
Sbjct: 236 NEEIQLFWRSKYISDDIPMFILFKALNIIKDRQIMEYIFHDIKSRENQTQMELLRDSLLL 295
Query: 288 AFVIQEQNVALNFIGAR--GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
++ N ALN+IG R + + K+ +K A+ IL +LPH+G + +KA+F+
Sbjct: 296 CSKVKSVNSALNYIGLRVLASSKNIGKQDAVKAAKNILNYYLLPHIGQDEKSLHQKAFFV 355
Query: 346 GYMVHRLLLASLGRRELDDRDHY---------------VRMYAQKFIDRGK--------- 381
GYM+ +LL A+ + DDRDHY + +FI RGK
Sbjct: 356 GYMIKKLLNAANNKCIEDDRDHYGKKRMDISGNLLSQLFKERVSQFIKRGKMMLQEKFSK 415
Query: 382 ---DFNLELAIKT-----KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT-FASS 432
D N ++K KII+D L+ ++ATGNWG AR GVSQ L R T F ++
Sbjct: 416 IFRDSNACFSLKNDIFDHKIISDALKAAIATGNWGVTADGEVARTGVSQQLKRDTCFFAT 475
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
LS++RRV +P + K KPRQLHN+ +GMICPAETPEG +G++KN+A M +S+G Q
Sbjct: 476 LSNMRRVTAPQRQISKQTKPRQLHNSHYGMICPAETPEGQNIGMIKNMAFMTQVSLGLQE 535
Query: 493 S---PILEFLEEW-SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
ILEFLE + ++ +I IA K+F NG W G +DPE L+ +K RR+
Sbjct: 536 RDNLQILEFLESAVQVFDITQINVEEIAGMNKVFFNGNWFGFCKDPEDLIELFKKYRRKK 595
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG---SLLLKKRHI----DNLKERD 601
++S++RD+ ++EIRI+TD+GR RPL + EN L + K ++ N++E+
Sbjct: 596 QEF-KDISVVRDVINKEIRIYTDSGRCMRPLFVVENARNRKLFINKENLKLINKNVQEKR 654
Query: 602 YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
++NY +G +EY+D EEE +MI +
Sbjct: 655 FSNYCL-----NGFIEYLDVEEEEISMIGI 679
>gi|83415469|gb|ABC17942.1| RNA polymerase II second largest subunit, partial [Basidiobolus
ranarum]
Length = 720
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/281 (63%), Positives = 221/281 (78%), Gaps = 3/281 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ID ++FNL LA+K+ IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLAMLFRMLXRKLTKDVGRYLQKCIDSNREFNLTLAVKSNTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A QARAGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 AMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+YISVG+ +P++E L +W+ME+LE+ + + IADATKIFVNG WVGIHR
Sbjct: 130 ACGLVKNLALMSYISVGNPSAPVVEVLADWAMESLEQFSANNIADATKIFVNGVWVGIHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T+R+ RR++D I EVSI+RDIRD+EIR +TDAGR+CRPL + EN + L+K
Sbjct: 190 DPGNLIETMRRFRRRVD-ISPEVSIVRDIRDKEIRFYTDAGRVCRPLYVVENQRITLRKE 248
Query: 593 HIDNLKERDYNN--YGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ L+ R+Y+ +GWQ LV +G+VEY+D EEE +MI M
Sbjct: 249 HVVALQMREYDGEPFGWQDLVVNGIVEYLDAEEEEVSMICM 289
>gi|83415489|gb|ABC17952.1| RNA polymerase II second largest subunit, partial [Umbelopsis
ramanniana]
Length = 717
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 178/279 (63%), Positives = 220/279 (78%), Gaps = 2/279 (0%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
L+ASL R V Y QK I+ ++FNL LA+K+ IT+GL+YSLATGNWGDQKK
Sbjct: 10 LMASLFRMLFKKLTKDVAKYLQKCIESSREFNLTLAVKSSTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A Q++AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT W M+CPAETPEG
Sbjct: 70 AMQSKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWDMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+YISVGS +P++ FLEEW+MENLEE++ S I DATKIFVNG WVGIHR
Sbjct: 130 ACGLVKNLALMSYISVGSAAAPLILFLEEWAMENLEELSASNIPDATKIFVNGVWVGIHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP +L+ +L+++RR +D I EVSI+RDIR++E+R++TDAGR CRPL I E+ L L K
Sbjct: 190 DPGELITSLKQMRRSVD-ISPEVSIVRDIREKELRMYTDAGRCCRPLFIVEDQQLKLTKD 248
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ L++ D +NY WQ L+ G++EYID EEET MI M
Sbjct: 249 HVALLQDPD-SNYRWQDLISDGIIEYIDAEEEETAMICM 286
>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
Length = 674
Score = 365 bits (936), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 186/301 (61%), Positives = 218/301 (72%), Gaps = 29/301 (9%)
Query: 358 GRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKT 391
GRRE DDRDHY VR Y QK +D+GKD NL AIK
Sbjct: 1 GRREEDDRDHYGNKRLDLAGPLLGGLFRQLFRKLTRDVRAYVQKNVDQGKDLNLTFAIKA 60
Query: 392 KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
K IT GL+YSLATGNWG A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAK
Sbjct: 61 KTITSGLKYSLATGNWG-AANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAK 119
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
PRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEWS EN EEI+
Sbjct: 120 PRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEIS 179
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
P+ I ATKIFVNG WVGIHRDP+ L+ TLR+LRR++D + +EV ++RDIR +E+RI+TD
Sbjct: 180 PAVIPQATKIFVNGGWVGIHRDPDLLVKTLRELRRRVD-VNTEVGVVRDIRLKELRIYTD 238
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIA 630
GR RPL I E LL+KK+ I L++R+ + GW LV G +EYIDT EEETTMI+
Sbjct: 239 YGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGFIEYIDTEEEETTMIS 298
Query: 631 M 631
M
Sbjct: 299 M 299
>gi|262302159|gb|ACY43672.1| RNA polymerase subunit 2 [Acheta domesticus]
Length = 181
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/181 (93%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+++ GEEP+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIIKDGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRIIA+LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302237|gb|ACY43711.1| RNA polymerase subunit 2 [Nicoletia meinerti]
Length = 180
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/180 (94%), Positives = 178/180 (98%)
Query: 95 LRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTEL 154
LRNLTYSAPLYVDITKT++++GE+P+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTEL
Sbjct: 1 LRNLTYSAPLYVDITKTIIKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTEL 60
Query: 155 NECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTST 214
NECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK EIRSCLEHSSRPTST
Sbjct: 61 NECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKAEIRSCLEHSSRPTST 120
Query: 215 LWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 274
LWVNMMARGGQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD
Sbjct: 121 LWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDD 180
>gi|262302213|gb|ACY43699.1| RNA polymerase subunit 2 [Ischnura verticalis]
Length = 181
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/181 (94%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV ++GEEP+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVAKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD K+AYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|157814060|gb|ABV81775.1| putative DNA-directed RNA polymerase II subunit 2 [Speleonectes
tulumensis]
Length = 181
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/181 (94%), Positives = 178/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVV+ GE+P+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKSAIGQRII ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSIKKSAIGQRIIGILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302241|gb|ACY43713.1| RNA polymerase subunit 2 [Periplaneta americana]
Length = 181
Score = 363 bits (933), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 171/181 (94%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V+ GEEP+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD K+AYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
Length = 858
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/344 (54%), Positives = 228/344 (66%), Gaps = 50/344 (14%)
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
MV+RLLL +L R+E DDRDH+ + Y Q+ ++ K
Sbjct: 1 MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYNYMQRCVENDK 60
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S+LSHLRR N+
Sbjct: 61 EFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRTNT 120
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL FLEE
Sbjct: 121 PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTASEPILYFLEE 180
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W ME LE+ PS D T++FVNG WVG HR+P QL+ T+R+LRR+ DI EVSIIRDI
Sbjct: 181 WGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDI-SPEVSIIRDI 239
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNYGWQVLVQSG 614
R+RE +I TDAGR+ RPL I ++ G L+L+K HI L +Y+ Y
Sbjct: 240 REREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDEYD-------- 291
Query: 615 VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
EE W LV GVVEY+D EEET MIAM+P
Sbjct: 292 --------EESQANAYTWSSLVNDGVVEYVDAEEEETIMIAMTP 327
>gi|157814048|gb|ABV81769.1| putative DNA-directed RNA polymerase II subunit 2 [Mesocyclops
edax]
Length = 181
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 170/181 (93%), Positives = 178/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVV++G EPV TQHQK+FIGKIPIMLRSTYCLLNG+TDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVKEGREPVETQHQKTFIGKIPIMLRSTYCLLNGMTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ+LKKSAIGQRI+ ILPYIKQEIP+MIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQNLKKSAIGQRIVGILPYIKQEIPVMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302179|gb|ACY43682.1| RNA polymerase subunit 2 [Ctenolepisma lineata]
Length = 181
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/181 (94%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++Q E+P+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKQDEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|343482720|gb|AEM45105.1| RNA polymerase II second largest subunit [Archaeorhizomyces
finlayi]
Length = 573
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/314 (57%), Positives = 231/314 (73%), Gaps = 17/314 (5%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V Y Q+ ++ ++FNL LA+K+ IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLASLFRMLFKKLTRDVYKYMQRCVETNREFNLTLAVKSNTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AR GVSQVLNR TFAS+LSHLRR N+PIGR+GK+AKPRQLHNT WG++CPAETPEG
Sbjct: 70 GLAARVGVSQVLNRYTFASTLSHLRRTNTPIGREGKVAKPRQLHNTHWGLVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+Y+SVGS +PI+EFLEEW MENLE+ PSA + TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMSYVSVGSASAPIIEFLEEWGMENLEDYNPSATPNTTKVFVNGVWLGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------G 585
DPE L+ T+R LRR++D I +EVS++RDIR++E+R++TDAGR+CRPL I +N G
Sbjct: 190 DPEHLVSTVRSLRRKLD-ISAEVSVVRDIREKELRLYTDAGRVCRPLFIVDNDTESNRYG 248
Query: 586 SLLLKKRHIDNL---KER-----DYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW-QVLV 636
L+L K H+D L +E+ D + W L+ +G+VEYID EEET MIAM + L
Sbjct: 249 ELMLTKGHVDALNAGREKTDDRPDSERFRWNDLISNGIVEYIDAEEEETIMIAMTPEDLE 308
Query: 637 QSGVVEYIDTLEEE 650
S V+ D +E++
Sbjct: 309 MSRRVQRGDNVEQQ 322
>gi|262302153|gb|ACY43669.1| RNA polymerase subunit 2 [Acanthocyclops vernalis]
Length = 181
Score = 362 bits (929), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 178/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V++G EP+ TQHQK+FIGKIPIMLRSTYCLLNG+TDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKEGREPIETQHQKTFIGKIPIMLRSTYCLLNGMTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ+LKKSAIGQRI+ ILPYIKQEIP+MIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQNLKKSAIGQRIVGILPYIKQEIPVMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
Length = 1123
Score = 362 bits (929), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 236/661 (35%), Positives = 353/661 (53%), Gaps = 80/661 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ +YF +GLVRQ LDSF++FI+ +Q I+++ +I+ TE+ P +
Sbjct: 8 WAIVESYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIE---------TEI---PGLKI 55
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K +I + KP E D + P EARLRNLTY+AP+Y+ + E + + +
Sbjct: 56 KLGKIRVGKPRVREADRGDREITPMEARLRNLTYAAPIYLTMIPV-----ENNIEGEPTE 110
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIML+S L L E+ E P DPGGYFIING+EKV++ QE +ATN V
Sbjct: 111 VYIGDLPIMLKSVADPTADLPAEKLVEIGEDPKDPGGYFIINGTEKVIVTQEDLATNRVL 170
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V K S + H+++ S+ + + L+ S I P +
Sbjct: 171 VDEGKSG---------SNVTHTAKIISSTAGYRVPITIERLRDSTIH----VSFPAVPGR 217
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
IP I+ RALG DRDI + +D E+ + PSL++A I Q AL+FIG R A
Sbjct: 218 IPFAILMRALGLETDRDITFAVSFD---EEIQNELLPSLEQASSITTQEDALDFIGNRVA 274
Query: 307 RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 366
G +E RI+ A ++L K LPH+G++ KKAY+LGY V +L+ LGRRE DD+D
Sbjct: 275 I-GQKRENRIERAEQVLDKYFLPHLGLTPADRKKKAYYLGYAVSKLIELQLGRREPDDKD 333
Query: 367 HYV---------------RMYAQKFID-----------RGKDFNLELAIKTKIITDGLRY 400
HY R+ + F+ RG+ L ++ IIT+ +R+
Sbjct: 334 HYANKRLKLAGDLFSSLFRVAFKAFVKDLVYQLEKSKVRGRRLTLNALVRPDIITERIRH 393
Query: 401 SLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLW 460
++ATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T W
Sbjct: 394 AMATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQW 447
Query: 461 GMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA--------P 512
G +CP ETPEG GLVKNLAL+A ISVG + + L E + LEE+ P
Sbjct: 448 GRMCPFETPEGPNSGLVKNLALLAQISVGINDKIVEKMLYELGVIPLEELIRKIDEGEDP 507
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII--VSEVSIIRDIRDREIRIHT 570
S+ + +K+ +NG VG + + E+L +R+ RR +I ++ I+ D D E+ +++
Sbjct: 508 SSYTNWSKVILNGRLVGYYPNGEELANKMREKRRAGEISDEINVAHIVTDTYD-EVYVNS 566
Query: 571 DAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA 630
D+GR+ RPL++ ++G L+ + I LK+ + + LV+ G +E++D EEE IA
Sbjct: 567 DSGRVRRPLIVVKDGKPLVTEEDIQRLKKGEIT---FDTLVKEGKIEFLDAEEEENAYIA 623
Query: 631 M 631
+
Sbjct: 624 L 624
>gi|157814042|gb|ABV81766.1| putative DNA-directed RNA polymerase II subunit 2 [Forficula
auricularia]
Length = 181
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 171/181 (94%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V+ EEPV TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKDKEEPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|359294867|gb|AEV21804.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294869|gb|AEV21805.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294871|gb|AEV21806.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294877|gb|AEV21809.1| RPB2, partial [Meyerozyma guilliermondii]
gi|359294879|gb|AEV21810.1| RPB2, partial [Meyerozyma guilliermondii]
Length = 328
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 184/332 (55%), Positives = 236/332 (71%), Gaps = 31/332 (9%)
Query: 172 KVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R +KS
Sbjct: 1 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGRE----EKS 56
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E FV
Sbjct: 57 TSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEGFV 116
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQE+ VAL+FIG RGA G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYMV+
Sbjct: 117 IQEREVALDFIGRRGAALGIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYMVN 176
Query: 351 RLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFN 384
RLLL +L R+E DDRDH+ + Y Q+ ++ K FN
Sbjct: 177 RLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVENDKVFN 236
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
L LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PIG
Sbjct: 237 LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 296
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 297 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|262302195|gb|ACY43690.1| RNA polymerase subunit 2 [Eumesocampa frigilis]
Length = 181
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 170/181 (93%), Positives = 178/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITK+VV++GEE V TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKSVVKEGEEAVETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKSAIGQRIIAI+PYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
Length = 1141
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 230/655 (35%), Positives = 360/655 (54%), Gaps = 77/655 (11%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W +++A+ E GLVR Q+DSF++F++ +Q +V ++ I+ + + + +
Sbjct: 38 WALVDAFISEGGLVRHQIDSFNDFVEKKLQEVVNENSLIETEVKGLY------------I 85
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K E+I + KP E D S + P EARLRNLTY+APLY +T + EE QK
Sbjct: 86 KLERIEVGKPRVREADASEHILYPMEARLRNLTYAAPLY--LTMVLYVNDEE---VDRQK 140
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIM++S +C L GL ++L E P DPGGYFIINGSE+V+++QE +A N +
Sbjct: 141 VYIGDLPIMIKSKFCNLYGLKRQELISKLEDPDDPGGYFIINGSERVIVSQEDLAPNKPF 200
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
F D A T + + + +T+ V G I P I
Sbjct: 201 -FDKGDK--ASITNVAKVISIGAGYKTTVTVERHRDG-----------IIYVTFPAIATR 246
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ-NVALNFIGARG 305
IP I+ RALG D DI ++ DDP++ + PSL + I + AL+FIG++
Sbjct: 247 IPFPIIMRALGLETDEDI---VLAVSDDPDIQNELLPSLQFSVQIASTIDDALDFIGSKV 303
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
A G +E RI+ A+++L + LPH+G ++ KKA +G MV ++ LGRR+ DD+
Sbjct: 304 A-IGQPREVRIERAKQVLDRYFLPHLGATEEARVKKALLVGQMVKGVIEMYLGRRQPDDK 362
Query: 366 DHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
DH +R ++ RGK +L ++ IIT+ +R
Sbjct: 363 DHIANKRVRLVGDLLAQLFRAVFKQVLQDIRQQLERHYSRGKIPSLVTLVRADIITERIR 422
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
++LATGNW R GVSQ+L+R S+LSHLRR+ S + R + R LH T
Sbjct: 423 HALATGNW------IGGRTGVSQMLDRTNVLSTLSHLRRIVSNLSRTQPHFEARDLHPTQ 476
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WG +C ETPEG GLVKNLAL++ I+VG + + + L + + + + + T
Sbjct: 477 WGRLCAIETPEGQNCGLVKNLALLSTITVGVNENEVEKMLYDLGVVPILKARKEGVK-GT 535
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR---EIRIHTDAGRIC 576
++++NG +GIH +PE+L+GT+R++RR+ I E++I R I++ E+R++ D GR+
Sbjct: 536 EVYLNGRLIGIHTEPEKLVGTVREMRRRGQ-ISHEINIAR-IQNEYLDELRVNCDGGRLR 593
Query: 577 RPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
RPLLI E+G LK HI+ L++ +++ W L+ +G++EY+D EEE ++A+
Sbjct: 594 RPLLIIEDGKPRLKPEHIERLRKGEWS---WSDLISNGIIEYLDGDEEENALVAI 645
>gi|262302255|gb|ACY43720.1| RNA polymerase subunit 2 [Scutigera coleoptrata]
Length = 181
Score = 361 bits (926), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 169/181 (93%), Positives = 179/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+++GE+PV TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKEGEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|359294889|gb|AEV21815.1| RPB2, partial [Candida albicans]
gi|359294891|gb|AEV21816.1| RPB2, partial [Candida albicans]
gi|359294893|gb|AEV21817.1| RPB2, partial [Candida albicans]
gi|359294895|gb|AEV21818.1| RPB2, partial [Candida albicans]
gi|359294897|gb|AEV21819.1| RPB2, partial [Candida albicans]
Length = 328
Score = 361 bits (926), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 181/332 (54%), Positives = 236/332 (71%), Gaps = 31/332 (9%)
Query: 172 KVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R +K
Sbjct: 1 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD----EKG 56
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E FV
Sbjct: 57 VSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFV 116
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYMV+
Sbjct: 117 IQEREVALDFIGRRGVALGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVN 176
Query: 351 RLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFN 384
RLLL +L R+E DDRDH+ + Y Q+ ++ G DFN
Sbjct: 177 RLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFN 236
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
+ LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N+PIG
Sbjct: 237 VTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 296
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 297 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|262302231|gb|ACY43708.1| RNA polymerase subunit 2 [Machiloides banksi]
Length = 181
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 178/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVV+ GE+P+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKS++GQ+IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302155|gb|ACY43670.1| RNA polymerase subunit 2 [Armillifer armillatus]
Length = 181
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 169/181 (93%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV R+GE+PV TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVHREGEDPVETQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF++KDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFALKDSKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKSAIGQRI+ +LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSIKKSAIGQRIVCVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|359294861|gb|AEV21801.1| RPB2, partial [Candida tropicalis]
gi|359294863|gb|AEV21802.1| RPB2, partial [Candida tropicalis]
gi|359294865|gb|AEV21803.1| RPB2, partial [Candida tropicalis]
gi|359294873|gb|AEV21807.1| RPB2, partial [Candida tropicalis]
Length = 328
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/332 (54%), Positives = 235/332 (70%), Gaps = 31/332 (9%)
Query: 172 KVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R +K
Sbjct: 1 KVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRD----EKG 56
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E FV
Sbjct: 57 VAGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFV 116
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYMV+
Sbjct: 117 IQEREVALDFIGRRGVALGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVN 176
Query: 351 RLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFN 384
RLLL +L R+E DDRDH+ + Y Q+ ++ DFN
Sbjct: 177 RLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRCVENDSDFN 236
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
L LA+K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N+PIG
Sbjct: 237 LTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 296
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RDGK+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 297 RDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|83415445|gb|ABC17930.1| RNA polymerase II second largest subunit, partial [Allomyces
arbuscula]
Length = 584
Score = 360 bits (924), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 174/264 (65%), Positives = 208/264 (78%), Gaps = 5/264 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y I+RG++FNL +AI + IT+GLRY+LATGNWGDQKK + RAGVSQVLNR T
Sbjct: 11 VSRYFTVCIERGREFNLNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYT 70
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
FAS+LSHLRR+N+PIGR+GKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALMAYISV
Sbjct: 71 FASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISV 130
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
GS PILEFLEEW+ ENLEEI SAI TK+FVNG WVGIHR P+ L+ TL LRR
Sbjct: 131 GSASGPILEFLEEWTTENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQTLISLRRSG 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA-ENGSLLLKKRHIDNLKERDYNNYGW 607
DI+ EVS++RD+RD E+RI+TDAGRICRPL I E L+L++ H+ L + +GW
Sbjct: 191 DIM-PEVSVVRDVRDNELRIYTDAGRICRPLFIVNEQQQLVLRRDHVARL---EVGEWGW 246
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
+ L+ +G+VEY+DT EEETTMI M
Sbjct: 247 EDLLANGIVEYLDTEEEETTMICM 270
>gi|262302251|gb|ACY43718.1| RNA polymerase subunit 2 [Pedetontus saltator]
Length = 181
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 178/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GE+P+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKS++GQ+IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302193|gb|ACY43689.1| RNA polymerase subunit 2 [Eurytemora affinis]
Length = 181
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 178/181 (98%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVVR+G++PV TQHQK+FIGKIPIMLRSTYCLLNG+TDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVREGQDPVETQHQKTFIGKIPIMLRSTYCLLNGMTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD K+AYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLW+NM+ARGGQ++KKSAIGQRI+ ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWINMLARGGQNVKKSAIGQRIVGILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302163|gb|ACY43674.1| RNA polymerase subunit 2 [Ammothea hilgendorfi]
Length = 181
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+++GEEPVTTQHQK+FIGKIPIMLRSTYCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKEGEEPVTTQHQKTFIGKIPIMLRSTYCLLNSLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF MKDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ RGGQ ++KSAIGQRI+AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLTRGGQGVRKSAIGQRILAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302249|gb|ACY43717.1| RNA polymerase subunit 2 [Polyxenus fasciculatus]
Length = 181
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 170/181 (93%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVVR+GEEP TQHQK FIGKIPIMLRS YCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVREGEEPTETQHQKMFIGKIPIMLRSNYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYA+K+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAFKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQ +KKSAIGQRII ILPYI+QEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQGVKKSAIGQRIIGILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|157814044|gb|ABV81767.1| putative DNA-directed RNA polymerase II subunit 2 [Lithobius
forticatus]
Length = 181
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 169/181 (93%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V++GEE + TQHQK+FIGKIPIMLRSTYCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKEGEEQIETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQ +KKSAIGQRII ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQGVKKSAIGQRIIGILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|343482722|gb|AEM45106.1| RNA polymerase II second largest subunit [Archaeorhizomyces sp.
FG15P2b]
Length = 736
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/294 (59%), Positives = 219/294 (74%), Gaps = 16/294 (5%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ ++FNL LA+K+ IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLAGLFRMLFKKLTRDVYKYMQKCVETNREFNLTLAVKSNTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AR GVSQVLNR TFAS+LSHLRR N+PIGR+GK+AKPRQLHNT WG++CPAETPEG
Sbjct: 70 GLAARVGVSQVLNRYTFASTLSHLRRTNTPIGREGKVAKPRQLHNTHWGLVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+Y+SVGS +PI+E LEEW MENLE+ PSA + TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMSYVSVGSASAPIIESLEEWGMENLEDYNPSATPNTTKVFVNGVWLGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------G 585
DPE L+ T+R LRR++D I +EVS++RDIR++E+R++TDAGR+CRPL I +N G
Sbjct: 190 DPEHLVSTVRSLRRKLD-ISAEVSVVRDIREKELRLYTDAGRVCRPLFIVDNDPDSARYG 248
Query: 586 SLLLKKRHIDNL---KER-----DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+L K H+D L +E+ D + W LV +G+VEYID EEET MIAM
Sbjct: 249 ELMLTKGHVDALNAGREKTDDRPDSERFRWNDLVSNGIVEYIDAEEEETIMIAM 302
>gi|157814068|gb|ABV81779.1| putative DNA-directed RNA polymerase II subunit 2 [Antheraea
paukstadtorum]
Length = 181
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V++ E+PV TQHQK+FIGKIPIMLRSTYCLLN LTDRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKENEDPVETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD K+AYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRIIAI+PYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302201|gb|ACY43693.1| RNA polymerase subunit 2 [Eurypauropus spinosus]
Length = 181
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 170/181 (93%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVVR+GEEP+ TQH K+FIGKIPIMLRS YCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVREGEEPIETQHTKTFIGKIPIMLRSAYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLE+SSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLENSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQ KKSAIGQRII ILPYIKQEIP+MIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQGGKKSAIGQRIIGILPYIKQEIPVMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|157814070|gb|ABV81780.1| putative DNA-directed RNA polymerase II subunit 2 [Cydia pomonella]
Length = 181
Score = 358 bits (920), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V++ E+P+ TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRIIAI+PYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302203|gb|ACY43694.1| RNA polymerase subunit 2 [Hanseniella sp. 'Han2']
Length = 181
Score = 358 bits (920), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 170/181 (93%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V++GEEP T H K+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTLVKEGEEPAETSHSKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLD GGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDCGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQ +KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQGVKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella
allomycis]
Length = 697
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/279 (59%), Positives = 217/279 (77%), Gaps = 1/279 (0%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ID +DFNL LA+K+ IT+GLRYS+ATGNWGDQKK
Sbjct: 10 LLAGLFRMLFRKLTKDVGKYLQKCIDSNRDFNLTLAVKSNTITNGLRYSIATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++RAGVSQVLNR T+AS+LSHLRRVN+PIGRDGKLAKPRQLHN+ WGM+CPAETPEG
Sbjct: 70 AMESRAGVSQVLNRYTYASTLSHLRRVNTPIGRDGKLAKPRQLHNSHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+YISVG+ P+PI++ L+ + ME L EI+PS+I + TKIF+NG W+G+H
Sbjct: 130 ACGLVKNLSLMSYISVGTSPAPIIDALKIYQMEYLAEISPSSIGNLTKIFMNGNWIGVHS 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP++L+ L+K RR+ I E S++ D+R++E+RI TDAGR CRPL + EN ++ LK+
Sbjct: 190 DPKRLVNDLKKFRRECAISF-ETSVVFDVREKEVRILTDAGRCCRPLFVVENQTIQLKED 248
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ L++RD +GWQ L+++GVVEY+D EEET+MI M
Sbjct: 249 QLSQLQQRDITGFGWQNLLENGVVEYLDVEEEETSMICM 287
>gi|86559345|gb|ABD04080.1| RNA polymerase II second largest subunit, partial [Boletinellus
merulioides]
Length = 315
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 175/319 (54%), Positives = 229/319 (71%), Gaps = 31/319 (9%)
Query: 175 IAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQE+MATN VYVF+ + S + EIRS +E + S V M R ++ ++G
Sbjct: 1 IAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRN----QERSLG 56
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
+ A +PYI+ +IPI +VFRALG ++DRDILEHI YD D +M+EM+KP +D+ FVIQ+
Sbjct: 57 NVMKATIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQD 116
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
+ VAL+FIG RG G+++ERRI+YA+EILQKEMLPHV +++ E+KKAYF GYM+HRLL
Sbjct: 117 REVALDFIGNRGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLL 176
Query: 354 LASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLEL 387
LA+L RRELDDRDH+ V Y QK ++ K+FNL L
Sbjct: 177 LAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQKCVESHKEFNLSL 236
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
A+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+G
Sbjct: 237 AVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREG 296
Query: 448 KLAKPRQLHNTLWGMICPA 466
K+AKPRQLHNT WGM+CPA
Sbjct: 297 KIAKPRQLHNTHWGMVCPA 315
>gi|258562148|gb|ACV81796.1| RNA polymerase II second largest subunit [Entorrhiza casparyana]
Length = 646
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/258 (64%), Positives = 210/258 (81%), Gaps = 5/258 (1%)
Query: 377 IDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHL 436
++ ++FNL LA+K+ IIT+GL+YSLATGNWGDQKK A+AGVSQVLNR TFAS+LSHL
Sbjct: 1 VEHHREFNLTLAVKSNIITNGLKYSLATGNWGDQKKFMSAKAGVSQVLNRYTFASTLSHL 60
Query: 437 RRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 496
RR N+PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALMAYISVGS +PI+
Sbjct: 61 RRCNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASAPII 120
Query: 497 EFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
EFLEEW MENL+E + ++ ATK+FVNG W+G+HRDP L+ T+R+LRR +D I EVS
Sbjct: 121 EFLEEWGMENLDEFSSNS-PHATKVFVNGVWIGVHRDPAHLVTTIRRLRRCVD-ISPEVS 178
Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY---NNYGWQVLVQS 613
++RDIR++E+R++TDAGR+CRPL + EN LLL K H++ L+ +++GW LV++
Sbjct: 179 VVRDIREKELRLYTDAGRVCRPLFVVENNQLLLAKPHVEWLRNHQTPSGDDFGWGSLVEN 238
Query: 614 GVVEYIDTLEEETTMIAM 631
G+VE+ID EEET MI M
Sbjct: 239 GIVEFIDAEEEETVMICM 256
>gi|83415483|gb|ABC17949.1| RNA polymerase II second largest subunit, partial [Mortierella
verticillata]
Length = 721
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 172/270 (63%), Positives = 209/270 (77%), Gaps = 8/270 (2%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y +K ID KDF L +A+K+ IT+GL+YSLATGNWG+Q KA Q+RAGVSQVLNR T
Sbjct: 26 VSKYLRKCIDSNKDFVLSVAVKSNTITNGLKYSLATGNWGEQLKAMQSRAGVSQVLNRYT 85
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
FAS+LSHLRR N+PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNLALM+ ISV
Sbjct: 86 FASTLSHLRRCNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSAISV 145
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
GS +PI+EFLE W MENLEE+ + I DATK+FVNG W G+HRDP L+ TL++LRR M
Sbjct: 146 GSPSAPIIEFLEGWGMENLEELTANNILDATKVFVNGVWAGVHRDPGSLVNTLKRLRRNM 205
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY------ 602
D I SEVSI++DIR++E+R++TDAGR RPL I E+ +LLL+K HID L Y
Sbjct: 206 D-INSEVSIVKDIREKELRMYTDAGRCLRPLFIVEDQALLLRKEHIDELTRAPYYEDGKA 264
Query: 603 -NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+GW L+ +G+VE++D EEET MI M
Sbjct: 265 MEPWGWNDLLSNGIVEFVDAEEEETIMICM 294
>gi|262302181|gb|ACY43683.1| RNA polymerase subunit 2 [Nymphon unguiculatum-charcoti complex sp.
SEM-1997]
Length = 181
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GEEPVTTQHQK+FIGKIPIMLRSTYCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEEPVTTQHQKTFIGKIPIMLRSTYCLLNSLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF MKDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKCEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ RGGQ ++KSAIGQRI+AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLTRGGQGVRKSAIGQRILAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|157814064|gb|ABV81777.1| putative DNA-directed RNA polymerase II subunit 2 [Triops
longicaudatus]
Length = 181
Score = 358 bits (919), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+R+GE+P+ TQHQK+FIGKIPIMLRSTYCLLNGL DRDL E
Sbjct: 1 RLRNLTYSAPLYVDITKTVIREGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLNDRDLAE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYF+INGSEKVLIAQEKMATNTVYVFSMKD K+AYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TL+VNMMARGGQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLFVNMMARGGQSVKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302197|gb|ACY43691.1| RNA polymerase subunit 2 [Ephemerella inconstans]
Length = 181
Score = 358 bits (918), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V++GE PV TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKEGENPVETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+MKD K+AYK EIRSC EHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKFAYKAEIRSCQEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMAR GQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|83415447|gb|ABC17931.1| RNA polymerase II second largest subunit precursor, partial
[Coelomomyces stegomyiae]
Length = 1080
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 176/281 (62%), Positives = 213/281 (75%), Gaps = 3/281 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V Y ++R + FNL +AI + IT+GLRY+LATGNWGDQKK
Sbjct: 10 LLASLFRTFFQKLTKDVGRYFTNCLERSRPFNLNMAINSNTITNGLRYALATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ RAGVSQVLNR TFAS+LSHLRR+N+PIGR+GKLAKPRQLHNT WGM+CPAETPEG
Sbjct: 70 FMETRAGVSQVLNRYTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS PI EFL EW+ ENLEEI+PS I TK+FVNG W+GIHR
Sbjct: 130 ACGLVKNLALMSIISVGSASEPIHEFLSEWTTENLEEISPSTIGPNTKVFVNGAWIGIHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA-ENGSLLLKK 591
+P+ L+ TL+ LRR DI SEVS++ DIR+ E+RI+TD GRICRPL + EN L+LKK
Sbjct: 190 EPDSLVKTLKTLRRATDID-SEVSVVHDIRENELRIYTDPGRICRPLFVVNENQQLVLKK 248
Query: 592 RHIDNLKERDYNN-YGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L E D + +GW+ L+ +G+VEY+DT EEET MI+M
Sbjct: 249 EHILKLSEEDEDAIWGWEKLLINGIVEYLDTEEEETVMISM 289
>gi|262302221|gb|ACY43703.1| RNA polymerase subunit 2 [Plathemis lydia]
Length = 181
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 169/181 (93%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV ++GEEPV TQHQK+FIGKIPIMLRSTYCLL LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVAKEGEEPVETQHQKTFIGKIPIMLRSTYCLLFALTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD K+AYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQ++KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis
KIN4/I]
gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
KIN4/I]
Length = 1132
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 231/668 (34%), Positives = 368/668 (55%), Gaps = 83/668 (12%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ AYF EKGLV QQL+S+++F+ ++Q+++E+ +++
Sbjct: 11 EDRWAIMRAYFKEKGLVSQQLESYNKFVTETMQKLIEELGEVEPFESG------------ 58
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
Y L+F +I +P EK G P+ P E R+R+LTY+AP+YV + +R + + +
Sbjct: 59 YKLEFIKIRYGEPIIKEKSGGTRPVTPTECRIRDLTYAAPIYVYMR---LRNPKGEIKDE 115
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG +P+M+RS L+ + +L E E P DPGGYFI++GSEKV++ QE +A N
Sbjct: 116 GWVE-IGMMPVMVRSILDPLSKKSPEELVEAGEDPRDPGGYFIVDGSEKVIVTQEDLALN 174
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYI 243
V V K +S + H+++ ST + Q + + + AI P +
Sbjct: 175 KVLV---------DKGGPQSTVTHTAKVLST----TLGYRVQVIVERQKDGTLHAIFPPL 221
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGA 303
+IP++++ RALG +D+DI + +D PE+ + + PS+++A + + AL+FIGA
Sbjct: 222 PGKIPLVVLIRALGIESDKDITSLVSFD---PEVQQELLPSIEQAASVPTVDDALDFIGA 278
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
R A G+ +++RI+ A+++L +LPH+G KKA FL +M +LL L +RE D
Sbjct: 279 RIAI-GMPRDKRIERAKQVLDNNLLPHLGKRPEDRIKKAIFLAHMARKLLEVYLEKREPD 337
Query: 364 DRDHYVR--------MYAQKF------------------IDRGKD-FNLELAIKTKIITD 396
D+DHY M A F + +G++ L + I++ +TD
Sbjct: 338 DKDHYANRRLKLAGDMLAALFRTHLRGLLNDVGYQLERSVLKGEERLKLRILIRSNYLTD 397
Query: 397 GLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLH 456
+R +LATGNW R GVSQ+L+R + S+LSHLRRV SP+ R+ + R+LH
Sbjct: 398 KVRQALATGNWVGN------RTGVSQLLDRTNWLSTLSHLRRVVSPLARNQPHYEARELH 451
Query: 457 NTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI------ 510
T WG ICP ETPEG +GLVKNLAL A+ISVG + + L+E + +EE+
Sbjct: 452 MTQWGRICPFETPEGPNIGLVKNLALSAHISVGVPEEEVEKVLDELGVIRVEEVLEKVKN 511
Query: 511 ---APSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSI----IRDIRD 563
P ++F+NG VG ++D +L +R+LRRQ + EVS+ D
Sbjct: 512 DEPVPEEAISGARVFLNGRPVGYYKDAHELAQKIRQLRRQGKLHY-EVSVGVYENDDGTI 570
Query: 564 REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLE 623
+E+ I+TD GR+ RP+ + ENG L LK H++ +K+ ++ ++ L+ G+VE +D E
Sbjct: 571 KEVYINTDPGRVMRPVFVVENGELKLKPEHVEKVKKGEWT---FKDLLMRGIVELLDADE 627
Query: 624 EETTMIAM 631
EE +IA+
Sbjct: 628 EENALIAI 635
>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
Length = 1131
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 233/662 (35%), Positives = 355/662 (53%), Gaps = 81/662 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W VI AYF KGLVRQ LDS+++F++ +Q I+++ +I TE+ P +
Sbjct: 14 WKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI---------PTEI---PGLKV 61
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+ +I + KP E D + P EARLRNLTY+APL++ + E + + ++
Sbjct: 62 RLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV-----ENNIEAEPEE 116
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIML+S ++ T L E+ E P DPGGYFI+NGSE+V++ QE +A N V
Sbjct: 117 VYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVL 176
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + K S + H+++ S+ + + LK P + +
Sbjct: 177 VDTGKTG---------SNITHTAKIISSTAGYRVPVTIERLKDGTFH----VSFPAVPGK 223
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
IP +I+ RALG + DRDI+ + D PE+ + PSL++A I + AL+FIG+R A
Sbjct: 224 IPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA 280
Query: 307 RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 366
G +E RI+ A++I+ K LPH+G S KKAY+L Y + +++ LGRRE DD+D
Sbjct: 281 -IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKD 339
Query: 367 HYV---------------RMYAQKFID-----------RGKDFNLELAIKTKIITDGLRY 400
HY R+ + F+ RG+ L+ ++ I+T+ +R+
Sbjct: 340 HYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRH 399
Query: 401 SLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLW 460
+LATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T W
Sbjct: 400 ALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQW 453
Query: 461 GMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA-- 518
G +CP ETPEG GLVKNLALMA I+VG + + L E + +EE+
Sbjct: 454 GRMCPFETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGED 513
Query: 519 -------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRIH 569
+K+ +NG VG +RD E+L +R+ RR+ + I EV++ + D E+ ++
Sbjct: 514 QNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRKGE-ISDEVNVGHIVTDFINEVHVN 572
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
D+GR+ RPL+I NG+ L+ + I+ L D + + LV+ G +EY+D EEE +
Sbjct: 573 CDSGRVRRPLIIVSNGNPLVTREDIEKL---DSGSITFDDLVRQGKIEYLDAEEEENAYV 629
Query: 630 AM 631
A+
Sbjct: 630 AL 631
>gi|110704328|gb|ABG88064.1| RNA polymerase II second largest subunit [Microbotryum violaceum]
Length = 699
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/285 (60%), Positives = 214/285 (75%), Gaps = 8/285 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V + QK ++ K FNL A+++ IT+GL+YSLATGNWGDQKK
Sbjct: 12 LLAALFRMLFRKLTKDVYRHLQKCVETQKSFNLNTAVRSNTITNGLKYSLATGNWGDQKK 71
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A A+AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 72 AMSAKAGVSQVLNRYTFASTLSHLRRCNAPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQ 131
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+YISVGS +PI+EFLEEW MENLEE + S ++ TK+FVNG W G+HR
Sbjct: 132 ACGLVKNLALMSYISVGSPSAPIVEFLEEWGMENLEEFS-SEMSKGTKVFVNGVWQGVHR 190
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T+++LRR D I EVS++RD+R+RE+R+HTDAGR+CRPL I E+ L+L +
Sbjct: 191 DPAHLVQTIKRLRRCGD-IAYEVSVVRDVRERELRLHTDAGRVCRPLFIVEDHRLVLTRH 249
Query: 593 HIDNLKERDYNN------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
HID L+ D + W L+++GVVEY+D EEET MI M
Sbjct: 250 HIDALQNEDSEDRPDEKRLKWTDLIETGVVEYVDAEEEETVMICM 294
>gi|262302215|gb|ACY43700.1| RNA polymerase subunit 2 [Metajapyx subterraneus]
Length = 180
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 169/180 (93%), Positives = 174/180 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVV++GEE TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVKEGEEQSETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKSAIGQRI AILPYIKQEIPIM VFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSIKKSAIGQRIXAILPYIKQEIPIMXVFRALGFVADRDILEHIIYDFD 180
>gi|262302169|gb|ACY43677.1| RNA polymerase subunit 2 [Argulus sp. Arg2]
Length = 181
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV ++G+EP+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVEKKGKEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYA+K EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKSAIGQRII ILPYIKQEIPIMI FRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSIKKSAIGQRIITILPYIKQEIPIMIAFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
Length = 1141
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 226/660 (34%), Positives = 357/660 (54%), Gaps = 87/660 (13%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ E GLVR Q+DSF++F++ +Q IV ++ I+ + + + +
Sbjct: 38 WELVRAFIREGGLVRHQIDSFNDFVEKKLQEIVNENNIIETEVKGLY------------I 85
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K E+I + KP E D S + P EARLRNLTY+APLY +T + EE QK
Sbjct: 86 KLERIEVGKPRVREADASEHILYPMEARLRNLTYAAPLY--LTMVLYVNDEE---VDRQK 140
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIM+RS +C L GL ++L E P DPGGYFIINGSE+V+++QE +A N +
Sbjct: 141 VYIGDLPIMVRSKFCNLYGLKRQELISKLEDPDDPGGYFIINGSERVIVSQEDLAPNKPF 200
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR-----IIAILP 241
Y ++ + H ++ S G K + +R I P
Sbjct: 201 ----------YDKGDKASITHVAKVISI---------GAGYKTTVTVERHRDGIIYVTFP 241
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ-NVALNF 300
I IP I+ RALG D DI ++ DDP++ + PSL + I + AL+F
Sbjct: 242 AIATRIPFPIIMRALGLETDEDI---VLAVSDDPDIQNELLPSLQFSVQIASTVDDALDF 298
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG++ A G +E RI+ A+++L + LPH+G ++ KKA +G MV ++ LGRR
Sbjct: 299 IGSKVA-IGQPREVRIERAKQVLDRYFLPHLGTTEDARIKKALMVGQMVKGVIEMYLGRR 357
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
+ DD+DH +R ++ RGK +L ++ II
Sbjct: 358 QPDDKDHIANKRVRLVGDLMAQLFRAVFRQVLQDIRQQLERHYSRGKIPSLVTLVRADII 417
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
T+ +R+++ATGNW R GVSQ+L+R S+LSHLRRV S + R + R
Sbjct: 418 TERVRHAIATGNW------IGGRTGVSQMLDRTNIMSTLSHLRRVVSNLSRTQPHFEARD 471
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LH T WG +C ETPEG GLVKNLAL++ I+VG + + + L + + +
Sbjct: 472 LHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGVDENEVEKLLYDLGVVPILRARKEG 531
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR---EIRIHTD 571
+ T++++NG +G+H +P++L+ T+R++RR+ I E+++ R IR+ E+R++ D
Sbjct: 532 VK-GTEVYLNGRLIGVHTEPDKLVSTIREMRRRGQ-INHEINVAR-IRNEYLDEVRVNCD 588
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR+ RPL+I ENG L+ H++ L++ ++ W L+ +G++EY+D EEE ++A+
Sbjct: 589 GGRLRRPLIIIENGKPKLRPEHVEKLRKGEWT---WSDLISNGIIEYLDGDEEENALVAI 645
>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.14.25]
gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.16.27]
gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.16.4]
gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
Length = 1131
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 233/662 (35%), Positives = 354/662 (53%), Gaps = 81/662 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W VI AYF KGLVRQ LDS+++F++ +Q I+++ +I TE+ P +
Sbjct: 14 WKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI---------PTEI---PGLKV 61
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+ +I + KP E D + P EARLRNLTY+APL++ + E + + ++
Sbjct: 62 RLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV-----ENNIEAEPEE 116
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIML+S ++ T L E+ E P DPGGYFI+NGSE+V++ QE +A N V
Sbjct: 117 VYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVL 176
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + K S + H+++ S+ + + LK P + +
Sbjct: 177 VDTGKTG---------SNITHTAKIISSTAGYRVPVTIERLKDGTFH----VSFPAVPGK 223
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
IP +I+ RALG + DRDI+ + D PE+ + PSL++A I + AL+FIG+R A
Sbjct: 224 IPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA 280
Query: 307 RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 366
G +E RI+ A++I+ K LPH+G S KKAY+L Y + +++ LGRRE DD+D
Sbjct: 281 -IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKD 339
Query: 367 HYV---------------RMYAQKFID-----------RGKDFNLELAIKTKIITDGLRY 400
HY R+ + F+ RG+ L+ ++ I+T+ +R+
Sbjct: 340 HYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRH 399
Query: 401 SLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLW 460
+LATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T W
Sbjct: 400 ALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQW 453
Query: 461 GMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA-- 518
G +CP ETPEG GLVKNLALMA I+VG + + L E + +EE+
Sbjct: 454 GRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGED 513
Query: 519 -------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRIH 569
+K+ +NG VG +RD E+L +R+ RR + I EV++ + D E+ ++
Sbjct: 514 QNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGE-ISDEVNVGHIVTDFINEVHVN 572
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
D+GR+ RPL+I NG+ L+ + I+ L D + + LV+ G +EY+D EEE +
Sbjct: 573 CDSGRVRRPLIIVSNGNPLVTREDIEKL---DSGSITFDDLVRQGKIEYLDAEEEENAYV 629
Query: 630 AM 631
A+
Sbjct: 630 AL 631
>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.G.57.14]
gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.N.15.51]
gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
Length = 1131
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 233/662 (35%), Positives = 354/662 (53%), Gaps = 81/662 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W VI AYF KGLVRQ LDS+++F++ +Q I+++ +I TE+ P +
Sbjct: 14 WKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI---------PTEI---PGLKV 61
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+ +I + KP E D + P EARLRNLTY+APL++ + E + + ++
Sbjct: 62 RLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV-----ENNIEAEPEE 116
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIML+S ++ T L E+ E P DPGGYFI+NGSE+V++ QE +A N V
Sbjct: 117 VYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVL 176
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + K S + H+++ S+ + + LK P + +
Sbjct: 177 VDTGKTG---------SNITHTAKIISSTAGYRVPVTIERLKDGTFH----VSFPAVPGK 223
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
IP +I+ RALG + DRDI+ + D PE+ + PSL++A I + AL+FIG+R A
Sbjct: 224 IPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA 280
Query: 307 RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 366
G +E RI+ A++I+ K LPH+G S KKAY+L Y + +++ LGRRE DD+D
Sbjct: 281 -IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKD 339
Query: 367 HYV---------------RMYAQKFID-----------RGKDFNLELAIKTKIITDGLRY 400
HY R+ + F+ RG+ L+ ++ I+T+ +R+
Sbjct: 340 HYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRH 399
Query: 401 SLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLW 460
+LATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T W
Sbjct: 400 ALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQW 453
Query: 461 GMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA-- 518
G +CP ETPEG GLVKNLALMA I+VG + + L E + +EE+
Sbjct: 454 GRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGED 513
Query: 519 -------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRIH 569
+K+ +NG VG +RD E+L +R+ RR + I EV++ + D E+ ++
Sbjct: 514 QNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGE-ISDEVNVGHIVTDFINEVHVN 572
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
D+GR+ RPL+I NG+ L+ + I+ L D + + LV+ G +EY+D EEE +
Sbjct: 573 CDSGRVRRPLIIVSNGNPLVTREDIEKL---DSGSITFDDLVRQGKIEYLDAEEEENAYV 629
Query: 630 AM 631
A+
Sbjct: 630 AL 631
>gi|83415481|gb|ABC17948.1| RNA polymerase II second largest subunit, partial [Coemansia
reversa]
Length = 722
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 177/296 (59%), Positives = 220/296 (74%), Gaps = 9/296 (3%)
Query: 340 KKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLR 399
KK LG + +L +L RR D + MY QK I+ +DFN+ LA+K+ IIT GLR
Sbjct: 1 KKRMDLGGPLLAMLFRTLFRRLTKD----IGMYLQKCIESNRDFNMTLAVKSNIITSGLR 56
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
Y+LATGNWG+QKKA QARAGVSQVLNR TFAS+LSH+RR N+PIGRDGK+AKPRQLHNT
Sbjct: 57 YALATGNWGEQKKAMQARAGVSQVLNRYTFASTLSHMRRCNTPIGRDGKIAKPRQLHNTH 116
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519
WG++CPAETPEG A GLVKNLALMA+++VG SPI EFL EWSMENL E+ +IA+AT
Sbjct: 117 WGLVCPAETPEGQACGLVKNLALMAHVTVGVDSSPIREFLNEWSMENLAEVQAKSIANAT 176
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
K+F+NG WVGIHR P++L+ + RR+ DI E SI+RDIR+RE+RIHTD+GR+CRPL
Sbjct: 177 KVFLNGDWVGIHRKPDELVECMLDARRKADITF-ETSIVRDIRERELRIHTDSGRVCRPL 235
Query: 580 LIAENG-SLLLKKRHIDNLKERDY---NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
LI ++ L LKK HID ++ D + Y W L+ GV+EY+D EEE MI M
Sbjct: 236 LIVDSSLRLRLKKAHIDAIERYDVAEDDAYKWADLLADGVIEYLDAEEEELAMICM 291
>gi|262302199|gb|ACY43692.1| RNA polymerase subunit 2 [Endeis laevis]
Length = 181
Score = 356 bits (913), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/181 (92%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV + GEEPVTTQHQK+FIGKIPIMLRSTYCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVYKDGEEPVTTQHQKTFIGKIPIMLRSTYCLLNRLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF MKDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ RGGQ ++KSAIGQRI+AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLTRGGQGVRKSAIGQRILAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
Length = 1131
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 233/662 (35%), Positives = 354/662 (53%), Gaps = 81/662 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W VI AYF KGLVRQ LDS+++F++ +Q I+++ +I TE+ P +
Sbjct: 14 WKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI---------PTEI---PGLKV 61
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+ +I + KP E D + P EARLRNLTY+APL++ + E + + ++
Sbjct: 62 RLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV-----ENNIEAEPEE 116
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIML+S ++ T L E+ E P DPGGYFI+NGSE+V++ QE +A N V
Sbjct: 117 VYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVL 176
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + K S + H+++ S+ + + LK P + +
Sbjct: 177 VDTGKTG---------SNITHTAKIISSTAGYRVPVTIERLKDGTFH----VSFPAVPGK 223
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
IP +I+ RALG + DRDI+ + D PE+ + PSL++A I + AL+FIG+R A
Sbjct: 224 IPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA 280
Query: 307 RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 366
G +E RI+ A++I+ K LPH+G S KKAY+L Y + +++ LGRRE DD+D
Sbjct: 281 -IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKD 339
Query: 367 HYV---------------RMYAQKFID-----------RGKDFNLELAIKTKIITDGLRY 400
HY R+ + F+ RG+ L+ ++ I+T+ +R+
Sbjct: 340 HYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRH 399
Query: 401 SLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLW 460
+LATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T W
Sbjct: 400 ALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQW 453
Query: 461 GMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA-- 518
G +CP ETPEG GLVKNLALMA I+VG + + L E + +EE+
Sbjct: 454 GRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGED 513
Query: 519 -------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRIH 569
+K+ +NG VG +RD E+L +R+ RR + I EV++ + D E+ ++
Sbjct: 514 QNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGE-ISDEVNVGHIVTDFINEVHVN 572
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
D+GR+ RPL+I NG+ L+ + I+ L D + + LV+ G +EY+D EEE +
Sbjct: 573 CDSGRVRRPLIIVSNGNPLVTREDIEKL---DSGSITFDDLVRQGKIEYLDAEEEENGYV 629
Query: 630 AM 631
A+
Sbjct: 630 AL 631
>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
L.S.2.15]
gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
Length = 1131
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 233/662 (35%), Positives = 354/662 (53%), Gaps = 81/662 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W VI AYF KGLVRQ LDS+++F++ +Q I+++ +I TE+ P +
Sbjct: 14 WKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI---------PTEI---PGLKV 61
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+ +I + KP E D + P EARLRNLTY+APL++ + E + + ++
Sbjct: 62 RLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV-----ENNIEAEPEE 116
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIML+S ++ T L E+ E P DPGGYFI+NGSE+V++ QE +A N V
Sbjct: 117 VYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVL 176
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + K S + H+++ S+ + + LK P + +
Sbjct: 177 VDTGKTG---------SNITHTAKIISSTAGYRVPVTIERLKDGTFH----VSFPAVPGK 223
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
IP +I+ RALG + DRDI+ + D PE+ + PSL++A I + AL+FIG+R A
Sbjct: 224 IPFVILMRALGILTDRDIVYAVSLD---PEIQNELFPSLEQASSIANVDDALDFIGSRVA 280
Query: 307 RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 366
G +E RI+ A++I+ K LPH+G S KKAY+L Y + +++ LGRRE DD+D
Sbjct: 281 -IGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKD 339
Query: 367 HYV---------------RMYAQKFID-----------RGKDFNLELAIKTKIITDGLRY 400
HY R+ + F+ RG+ L+ ++ I+T+ +R+
Sbjct: 340 HYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRH 399
Query: 401 SLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLW 460
+LATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T W
Sbjct: 400 ALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQW 453
Query: 461 GMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA-- 518
G +CP ETPEG GLVKNLALMA I+VG + + L E + +EE+
Sbjct: 454 GRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGED 513
Query: 519 -------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRIH 569
+K+ +NG VG +RD E+L +R+ RR + I EV++ + D E+ ++
Sbjct: 514 QNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGE-ISDEVNVGHIVTDFINEVHVN 572
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
D+GR+ RPL+I NG+ L+ + I+ L D + + LV+ G +EY+D EEE +
Sbjct: 573 CDSGRVRRPLIIVSNGNPLVTREDIEKL---DSGSITFDDLVRQGKIEYLDAEEEENAYV 629
Query: 630 AM 631
A+
Sbjct: 630 AL 631
>gi|157814050|gb|ABV81770.1| putative DNA-directed RNA polymerase II subunit 2 [Mastigoproctus
giganteus]
Length = 181
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 177/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+++GE+P+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATN+VYVFSMKDSKYAYK E RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNSVYVFSMKDSKYAYKAECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|52699894|gb|AAU87008.1| DNA-dependent RNA polymerase II second largest subunit [Taphrina
communis]
Length = 731
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 174/298 (58%), Positives = 215/298 (72%), Gaps = 20/298 (6%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R +R Y K +D GK+FNL LA+K IT+GLRYSLATG WGDQKK
Sbjct: 14 LLAGLFRMLFKRLTKDIRQYMTKCVDSGKEFNLPLAVKHTTITNGLRYSLATGTWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AR GVSQVLNR T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG
Sbjct: 74 QMNARVGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+Y+SVGS +PI+EFLEEW ME+LE+ PSA +TKIFVNG W+G+H
Sbjct: 134 ACGLVKNLALMSYVSVGSASAPIIEFLEEWGMESLEDYNPSAGRPSTKIFVNGVWLGVHS 193
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI----------- 581
DP L+ TLR LRR+ D I EVS++RDIR++E+R+ TDAGR+CRPL +
Sbjct: 194 DPGHLVKTLRSLRRKTD-ISPEVSVVRDIREKELRLFTDAGRVCRPLFVVHDDESAESDP 252
Query: 582 ---AENGSLLLKKRHIDNL---KER--DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+E GSL+LKK H+ + KE D + +GW ++ +G+ EY+D EEET MIAM
Sbjct: 253 TGESEAGSLVLKKEHVQRMAYSKEHPEDEDKFGWSQVLSNGIAEYLDAEEEETVMIAM 310
>gi|157814072|gb|ABV81781.1| putative DNA-directed RNA polymerase II subunit 2 [Prodoxus
quinquepunctellus]
Length = 181
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+ ++GEE + TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIFKEGEESIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQS+KKSAIGQRI+A++PYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQSIKKSAIGQRIVAVVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|157814046|gb|ABV81768.1| putative DNA-directed RNA polymerase II subunit 2 [Limulus
polyphemus]
Length = 181
Score = 355 bits (911), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+R+GE+P+ TQHQK+FIGKIPIMLRS YCLL+GLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIREGEDPIETQHQKTFIGKIPIMLRSAYCLLSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTE RSCLEHSSRPTS
Sbjct: 61 FKECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|359294881|gb|AEV21811.1| RPB2, partial [Candida glabrata]
gi|359294883|gb|AEV21812.1| RPB2, partial [Candida glabrata]
gi|359294885|gb|AEV21813.1| RPB2, partial [Candida glabrata]
Length = 328
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 178/332 (53%), Positives = 232/332 (69%), Gaps = 31/332 (9%)
Query: 172 KVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R +KS
Sbjct: 1 KVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRD----EKS 56
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+ + I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++ FV
Sbjct: 57 SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFV 116
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM++
Sbjct: 117 IQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 176
Query: 351 RLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFN 384
RLLL +L R++ DDRDH+ + Y Q+ ++ DFN
Sbjct: 177 RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFN 236
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PIG
Sbjct: 237 MKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIG 296
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGL 476
RDGKLAKPRQLHNT WG++CPAETPEG A GL
Sbjct: 297 RDGKLAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|262302253|gb|ACY43719.1| RNA polymerase subunit 2 [Prokoenenia wheeleri]
Length = 181
Score = 355 bits (910), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GEEP+ TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSNLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTE RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRI+AI+PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIVAIMPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302261|gb|ACY43723.1| RNA polymerase subunit 2 [Scolopendra polymorpha]
Length = 181
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GEE TQHQK+FIGKIPIMLRSTYCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEEQTETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS+KDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSLKDSKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM++RGGQ +KKSAIGQRIIA+LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLSRGGQGVKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
Length = 1130
Score = 354 bits (909), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 236/668 (35%), Positives = 362/668 (54%), Gaps = 82/668 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L +E W V+ AY DE GLVRQ LDSF+ F++ +Q IV++ I ++++ VE
Sbjct: 10 LSREDRWRVVKAYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKVESQG------VE- 62
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
+KF +I + +PT E DGS + P ARLRN+TY+APLY +T T+ GEE
Sbjct: 63 -----IKFGKIEVGQPTFREADGSDLALTPMIARLRNITYAAPLY--LTMTLYVDGEERR 115
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRD-LTELNECPLDPGGYFIINGSEKVLIAQEK 179
T + +IG +PIM++S C+L GL D + + E P DPGGYFI+NGSE+V++ QE
Sbjct: 116 T---ESVYIGSLPIMVKSKKCVLYGLKSEDEIVKYGEDPYDPGGYFIVNGSERVIVMQED 172
Query: 180 MATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
++ N V V Y + + H+++ S V R +++++ G I A
Sbjct: 173 LSVNRVLV------DYGGAS---GSVTHTAKVFS---VAAGQRSPLTVERTKDGM-IYAS 219
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL-DEAFVIQEQNVAL 298
P +IP++++ RALG D++I I +DP + + P L +++ + AL
Sbjct: 220 FPACPSKIPVVVLMRALGLKTDQEIAYAI---GNDPIIQQEFLPVLMEQSKIAATPEEAL 276
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG+R PG + RI+ A+ +L + +LPH+G KA+F+G MV RLL LG
Sbjct: 277 DYIGSR-VSPGQPRNVRIERAQAVLDENLLPHIGRGPAARISKAFFVGQMVSRLLELKLG 335
Query: 359 RRELDDRDHYVR--------MYAQKF------------------IDRGKDFNLELAIKTK 392
R DD+DH + AQ F + +D NL ++
Sbjct: 336 MRGPDDKDHLANKRIRQAGELIAQVFRSAFRQLVKEMTYSIERHTSKTRDINLVSIVRPD 395
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT+ L ++LATGNW R GVSQ+L+R + S++SHLRRV SP+ R +
Sbjct: 396 IITERLNHALATGNWVG------GRTGVSQILDRTNYLSTISHLRRVVSPLSRTQPHFEA 449
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL-EEWSMENLEEIA 511
R+LH T WG +CP E+PEG GLVK+LAL+A +S G+ + + L + +E+
Sbjct: 450 RELHPTQWGRLCPVESPEGQNCGLVKHLALLATLSNGTDEKQVYDLLVGRLGVVPVEKTV 509
Query: 512 PSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDI-------IVSEVSIIRDIRDR 564
I+ A ++++NG +G D + L TLRKLRR+ I S + ++ R
Sbjct: 510 GKNISGA-RVYLNGRLIGYVEDGKGLAETLRKLRREGRISHEVNVAFYSHEYTVGGVKGR 568
Query: 565 --EIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTL 622
E+ ++ DAGRI RPL++ ENG LK H++ L++ ++ W L+++G+VEY+D
Sbjct: 569 IEEVYVNCDAGRIRRPLIVVENGEPRLKHEHVELLRKGEWT---WSDLIENGIVEYLDAE 625
Query: 623 EEETTMIA 630
EEE IA
Sbjct: 626 EEENAYIA 633
>gi|88601058|gb|ABD46525.1| RNA polymerase II second largest subunit, partial [Sistotrema
confluens]
Length = 680
Score = 354 bits (909), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 172/280 (61%), Positives = 217/280 (77%), Gaps = 3/280 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V + QK ++ KDFN+ +A+K+ IT+GL+YSLATGNWGDQKK
Sbjct: 17 LLASLFRMLFRKLTKDVYRHLQKCVESHKDFNISIAVKSNTITNGLKYSLATGNWGDQKK 76
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR TFAS+LSHLRR N+P+GRDGK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 77 SMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGRDGKIAKPRQLHNTHWGMVCPAETPEGQ 136
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LMA ISVGS +P++EFL+EW +E+LEE A +A ATK+FVNG W+G+HR
Sbjct: 137 ACGLVKNLSLMACISVGSLSAPVIEFLQEWGLESLEENA-NAHGSATKVFVNGVWMGVHR 195
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
D L+ TLR+LRR+ D I SEVSI+RDIR++E+R++TDAGR+CRPL I EN LLLKK
Sbjct: 196 DAPNLVKTLRRLRRK-DDISSEVSIVRDIREKELRLYTDAGRVCRPLFIVENQQLLLKKE 254
Query: 593 HIDNLKERDYNN-YGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++ L ++ N Y W LV+ GV+E +D EEET MI M
Sbjct: 255 HVNMLNDKGRNEPYKWTHLVKDGVIELLDAEEEETVMICM 294
>gi|78100236|gb|ABB20919.1| RNA polymerase II second largest subunit, partial [Hydnum
albomagnum]
Length = 664
Score = 354 bits (909), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 171/280 (61%), Positives = 218/280 (77%), Gaps = 3/280 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V + QK ++ KDFN+ +A+K+ IT+GL+YSLATGNWGDQKK
Sbjct: 1 LLASLFRMLFRKLTKDVYRHLQKCVETHKDFNISIAVKSNTITNGLKYSLATGNWGDQKK 60
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR TFAS+LSHLRR N+P+GRDGK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 61 SMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGRDGKIAKPRQLHNTHWGMVCPAETPEGQ 120
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LMA ISVGS +P++EFL+EW +E+LEE A +A ATK+FVNG W+G+HR
Sbjct: 121 ACGLVKNLSLMACISVGSLSAPVIEFLQEWGLESLEENA-NAHGSATKVFVNGVWMGVHR 179
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
D L+ TLR+LRR+ D I SEVSI+RDIR++E+R++TDAGR+CRPL I EN LLLKK
Sbjct: 180 DAPNLVKTLRRLRRK-DDISSEVSIVRDIREKELRLYTDAGRVCRPLFIVENQQLLLKKE 238
Query: 593 HIDNLKERDYNN-YGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++ L +++ + Y W LV+ GV+E +D EEET MI M
Sbjct: 239 HVNMLNDKNRTDPYKWTHLVKDGVIELLDAEEEETVMICM 278
>gi|359294857|gb|AEV21799.1| RPB2, partial [Candida parapsilosis]
gi|359294859|gb|AEV21800.1| RPB2, partial [Candida parapsilosis]
gi|359294875|gb|AEV21808.1| RPB2, partial [Candida parapsilosis]
gi|359294887|gb|AEV21814.1| RPB2, partial [Candida parapsilosis]
Length = 328
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 178/328 (54%), Positives = 233/328 (71%), Gaps = 31/328 (9%)
Query: 176 AQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
AQE+ A N V VF S ++ EIRS +E SR S++ + + R +KS+ +
Sbjct: 5 AQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD----EKSSSAR 60
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E FVIQE+
Sbjct: 61 TIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQER 120
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYMV+RLLL
Sbjct: 121 EVALDFIGRRGVALGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLL 180
Query: 355 ASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELA 388
+L R+E DDRDH+ + Y Q+ ++ K+FNL LA
Sbjct: 181 CALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKEFNLTLA 240
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PIGRDGK
Sbjct: 241 VKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 300
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGL 476
+AKPRQLHNT WG++CPAETPEG A GL
Sbjct: 301 IAKPRQLHNTHWGLVCPAETPEGQACGL 328
>gi|157814094|gb|ABV81792.1| putative DNA-directed RNA polymerase II subunit 2 [Thulinius
stephaniae]
Length = 237
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 171/221 (77%), Positives = 189/221 (85%), Gaps = 3/221 (1%)
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
HQ RAGVSQVLNRLT+ SSLSHLRR+NSP+GR+GKLAKPRQLHNTLWGMICPAETPEG A
Sbjct: 1 HQTRAGVSQVLNRLTYCSSLSHLRRLNSPVGREGKLAKPRQLHNTLWGMICPAETPEGQA 60
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
VGLVKNLA+M+YISVGS PSPI EFLEEWSMENLEEIAPS+I +TKIFVNG WVGIHRD
Sbjct: 61 VGLVKNLAMMSYISVGSNPSPIAEFLEEWSMENLEEIAPSSIQGSTKIFVNGAWVGIHRD 120
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
PEQLM TLRKLRRQMDI+VSEVS++ DIRDREIRI T+AGRICRPLLI E L +K+ H
Sbjct: 121 PEQLMSTLRKLRRQMDIVVSEVSMVWDIRDREIRICTEAGRICRPLLIVEGQKLKIKRDH 180
Query: 594 IDNLKERD---YNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ID L + ++ YGWQ LV GVVE+ID EEET M AM
Sbjct: 181 IDQLGQPGNVRFSQYGWQDLVAGGVVEFIDIQEEETIMCAM 221
>gi|262302185|gb|ACY43685.1| RNA polymerase subunit 2 [Craterostigmus tasmanianus]
Length = 181
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
R+RNLTYSAPLYVDITKTVV+ GE+PV TQ QK+FIGKIPIMLRSTYCLL+GLTDRDLTE
Sbjct: 1 RIRNLTYSAPLYVDITKTVVKDGEDPVETQQQKTFIGKIPIMLRSTYCLLSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+MKDSKYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDSKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRII ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIGILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302257|gb|ACY43721.1| RNA polymerase subunit 2 [Scutigerella sp. 'Scu3']
Length = 181
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+V++GE+ + T HQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIVKEGEDNIETSHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYA+KTEIRSC+E+SSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAFKTEIRSCVENSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQ +KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQGARKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|118364886|ref|XP_001015664.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila]
gi|89297431|gb|EAR95419.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila SB210]
Length = 1226
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 242/712 (33%), Positives = 374/712 (52%), Gaps = 101/712 (14%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED-------------SPQIDLQA 49
Q+ CW +I+ YF + GL Q+ S++ FI+ S+ I+ED S + + Q
Sbjct: 27 QDDCWKIIDEYFKDNGLCSHQIKSYNHFIE-SLPLIMEDFKIEVRPTENYMNSNKKEQQI 85
Query: 50 EAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPS----------PMMPNEARLRNLT 99
+Q + T PR L ++ ++ + W + G + PMM AR+ +L
Sbjct: 86 RSQTSYTLTFDRPRKPLPPQKFHMERTFGWGRRGQDAQSSSHAQKIYPMM---ARISDLD 142
Query: 100 YSAPLYVDITKTVVRQGEEPVTTQHQKSFIG------------KIPIMLRSTYCLLNGLT 147
Y + + + +VR + P T+ QK I K+P+M++S YC L G
Sbjct: 143 YFVEIKIPVQ--LVRTIKHPDGTE-QKELITSRDKNQNLITLFKLPVMVQSMYCSLAGEN 199
Query: 148 DRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEH 207
+ EC D GGYFII GSEKV+IAQE+MA N VYVF KD K + EIRS +
Sbjct: 200 LEGRIKHGECQFDQGGYFIIKGSEKVIIAQERMAFNFVYVFQQKDPKMPWIAEIRSIRDK 259
Query: 208 SSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFV-ADRDILE 266
++ S + + R G+ ++ A I ++IPI ++ +ALG V +D++++E
Sbjct: 260 TNAVQSKFALKLKLRDGEY--------QLYARCKLINEDIPIFVLLKALGCVESDKEMME 311
Query: 267 HIIYDFDDP---EMMEMVKPSLDEAFVIQEQNVALNFIGAR--GARPGVTKERRIKYARE 321
I Y+ DP +MMEM++ SL A + AL FIG R + ++ A +
Sbjct: 312 RIFYNLKDPKNEQMMEMLRSSLLLAQHCNNKREALIFIGYRINATTNYRGSQEAMQSAED 371
Query: 322 ILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVR--------MYA 373
L+ +LPH+G + KK +F+GYM+ +LL A+LG+ + DDRDHY + + +
Sbjct: 372 TLKLYLLPHIGTQESDNDKKLFFIGYMIQKLLNAALGKTQEDDRDHYGKKRLDMAGALIS 431
Query: 374 QKFIDRGKDF------NLELAIKT------------------KIITDGLRYSLATGNWGD 409
Q F +R + F NL+ I K+I+D +R +LATGNWG
Sbjct: 432 QLFKERLRIFQKNAKKNLQQKINDISRDAQKSLNVIVDIFDHKLISDHIRLALATGNWGQ 491
Query: 410 QKKAHQARAGVSQVLNRLT-FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAET 468
+ GV+QVL R T +++SH+RRVN+P+ KLA+PRQLHNT +G+ICPAET
Sbjct: 492 TADGEVVKTGVAQVLKRDTSLFATMSHMRRVNAPMKSAAKLARPRQLHNTHYGLICPAET 551
Query: 469 PEGAAVGLVKNLALMAYISVG--SQPS-PILEFLEEW-SMENLEEIAPSAIADATKIFVN 524
PEG +G+VKNL+L+A +S+G SQ + I E LEE + ++ + I TK+F N
Sbjct: 552 PEGQKIGMVKNLSLLAQVSLGLSSQDNLKIQEQLEEQINQFDILNLKLEKIPYQTKVFFN 611
Query: 525 GCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAE- 583
G W+G PEQ++ +++RR I SI+RDI ++EIRI+TD GR RP+ +
Sbjct: 612 GNWIGFTETPEQIIDVFKEIRRLQKI--DGFSIVRDIINKEIRIYTDQGRGMRPVFTVQE 669
Query: 584 ----NGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L + K + + ++ + +Q L+ G +E +D EEE +IA+
Sbjct: 670 ICEGKNRLKITKSKLYAILQQ-FEGKAFQKLIDEGFIELLDVEEEEGALIAV 720
>gi|262302183|gb|ACY43684.1| RNA polymerase subunit 2 [Cryptocellus centralis]
Length = 181
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+R GE+ V TQHQK+FIGKIPIMLRSTYCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIRDGEDSVETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK E RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKAECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302229|gb|ACY43707.1| RNA polymerase subunit 2 [Hexagenia limbata]
Length = 181
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/181 (92%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITK VV++GE V TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKMVVKEGEASVETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF+MKD K+AYK EIRSC EHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKFAYKAEIRSCQEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMAR GQS+KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|108885423|gb|ABG23221.1| RNA polymerase II second largest subunit, partial [Bannoa sp.
MP3490]
Length = 646
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LL +L R V + QK ++ KDF+LE AI++ IT+GL+YSLATGNWGDQKK
Sbjct: 14 LLGALFRMLFRKLTKDVYRHLQKCVETQKDFHLEQAIRSTTITNGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A QA+AGVSQVLNR TFAS+LSHLR N+PIGRDGK+AKPRQLHN+ WGM+CPAETPEG
Sbjct: 74 AMQAKAGVSQVLNRYTFASTLSHLRXCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMAYISVGS +PI+EFLEEW MEN EE + S +A +TK+FVNG W GIHR
Sbjct: 134 ACGLVKNLALMAYISVGSPSAPIVEFLEEWGMENFEEFS-SDLAKSTKVFVNGVWQGIHR 192
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIA-ENGSLLLKK 591
DP+QL+ T++KLRR D I EVS++RD+R+RE+RI TD+GR RPL I E+ SL LK+
Sbjct: 193 DPQQLVHTIKKLRRCAD-ISCEVSVVRDVRERELRIFTDSGRXARPLFIVEEDMSLALKR 251
Query: 592 RHIDNLKER---DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+HI+ L + + N Y WQ +V +G+VEY+D EEET MI+M
Sbjct: 252 KHINWLTDSMDDEGNPYTWQSMVDTGIVEYLDAEEEETVMISM 294
>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
Length = 1141
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 231/663 (34%), Positives = 353/663 (53%), Gaps = 79/663 (11%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
EA W++ + +E+GL RQ LDS++ F++ LQ P
Sbjct: 25 EARWLLAKKFIEEQGLSRQHLDSYNRFVETM------------LQEIIDEQEIIETAFPE 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
K +I + KP E DGS + P EAR+RN+TY++P+Y++IT +V G E +
Sbjct: 73 VKFKLGKIEVLKPVSREADGSEVEITPFEARVRNITYASPMYLEIT--LVENGVESI--- 127
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
K +IG +PIM++S L+ ++ +L ++NE P DPGGYFIING+EKV+IAQE M TN
Sbjct: 128 KDKVYIGDLPIMIKSKLDPLSKMSPEELIKINEDPDDPGGYFIINGTEKVIIAQEDMVTN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYI 243
V V D A + + SS + + V M ++ S G +
Sbjct: 188 RVLV----DEGKAGSNVLYTAKAISSTGSYRISVMMELHKDGTITISFGG---------V 234
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGA 303
++P I+ RALGF D+DI+ + + PE+ ++ PSL+ + I + AL++IG
Sbjct: 235 PGKLPFAILMRALGFEKDQDIVYAVSLN---PEVQSLLLPSLEASRSIATVDDALDYIGT 291
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
R A G +E RI+ A++++ K PH+G S KK +FL M + +L SLG RE D
Sbjct: 292 RVA-IGQVRENRIERAKQVIDKYFFPHLGSSPKDRRKKGFFLAQMANMILELSLGWREPD 350
Query: 364 DRDHYVR--------------------------MYAQKFIDRGKDFNLELAIKTKIITDG 397
DRDHY A+K + R K F + +++ ++T+
Sbjct: 351 DRDHYANKRLKLAGDLLATLFRASFKNFVKDFNYQAEKVLTRSKRFKISSIVRSDVMTER 410
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
+R++LATG W K GVSQ+L+R + S LSHLRRV SP+ R L K R LH
Sbjct: 411 IRHALATGTWVGGK------TGVSQLLDRTNWMSMLSHLRRVVSPLSRSQPLFKARDLHG 464
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
T WG +CP ETPEG GLVKNL+L+ YI+VG + L + + +EE A+ +
Sbjct: 465 TQWGRMCPFETPEGPNCGLVKNLSLLTYITVGISEKKVENQLYKLGVIPVEEALKDAVEN 524
Query: 518 -------ATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRI 568
T++++NG +G + D E+L T+R++RR+ D + E++++ R +E+ +
Sbjct: 525 NNTQYLEMTRVYLNGRHIGYYPDGEKLASTIREMRRKGD-LHHEINVVYYERPQIKELYV 583
Query: 569 HTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTM 628
+TDAGRI RPL+I NG + KR I+ L++ + + LV+ G +EY+D EEE
Sbjct: 584 NTDAGRIRRPLIIVRNGKPAVTKRDIEALRKGEKT---FSDLVKEGKIEYLDAEEEENAY 640
Query: 629 IAM 631
IA+
Sbjct: 641 IAL 643
>gi|157814052|gb|ABV81771.1| putative DNA-directed RNA polymerase II subunit 2 [Narceus
americanus]
Length = 181
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/181 (90%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GE+P+ TQHQK FIGKIPIMLRSTYCLLN LTDRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEDPIETQHQKMFIGKIPIMLRSTYCLLNSLTDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS+KDSK+A+K+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSLKDSKFAFKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIA+LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302219|gb|ACY43702.1| RNA polymerase subunit 2 [Limnadia lenticularis]
Length = 181
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVV+ GE P+ TQHQK+FIGKIPIMLRSTYCLLNG+ DRDL E
Sbjct: 1 RLRNLTYSAPLYVDITKTVVKDGEAPIETQHQKTFIGKIPIMLRSTYCLLNGMVDRDLCE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK+SKYAYK EIRSCLEHSSRP S
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKESKYAYKAEIRSCLEHSSRPVS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TL+VNM+ARGGQ +KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLYVNMLARGGQGMKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302263|gb|ACY43724.1| RNA polymerase subunit 2 [Stenochrus portoricensis]
Length = 181
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 164/181 (90%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+++ ++PV TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKENDDPVETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATN+VYVFSMKDSKYAYK E RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNSVYVFSMKDSKYAYKAECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|294721609|gb|ADF32951.1| RNA polymerase II second largest subunit [Sarcinomyces crustaceus]
Length = 352
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 212/283 (74%), Gaps = 21/283 (7%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
+R+Y + ++ G++FNL LA+K+ IIT GLRYSLATGNWGDQKKA A+AGVSQVLNR T
Sbjct: 12 IRLYLSRCVENGREFNLTLAVKSNIITSGLRYSLATGNWGDQKKAASAKAGVSQVLNRYT 71
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM Y+SV
Sbjct: 72 YASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSV 131
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
G+ PI+EF+ + +ME LEE P +ATK+FVNG WVG+HRDP QL+GT+++LRR
Sbjct: 132 GTPADPIIEFMNQRNMELLEEYEPKNNPNATKVFVNGVWVGVHRDPTQLVGTVQELRRN- 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLK--- 598
I E+S+IRD+RDRE +I TDAGR+CRPL + +N G L+LK+ HI+ L+
Sbjct: 191 GTISFEISLIRDVRDREFKIFTDAGRVCRPLFVVDNNPSSADRGQLVLKREHIEKLQYDR 250
Query: 599 ----------ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ERD YGW+ LV G+VEY+D EEETTM+ M
Sbjct: 251 DQDTTGMSEEERDSRIYGWKGLVSDGIVEYLDAEEEETTMMVM 293
>gi|111054468|gb|ABH04316.1| RNA polymerase II second largest subunit [Paraglomus occultum]
Length = 586
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 215/285 (75%), Gaps = 7/285 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R + Y +K ID ++FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLASLFRMLFRKLTKDIGAYLRKCIDTSREFNLNLAVKAQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A Q+RAGVSQVLNR TFAS+LSHLRR N+P+GRDGK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 AMQSRAGVSQVLNRYTFASTLSHLRRCNTPMGRDGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI--ADATKIFVNGCWVGI 530
A GLVKNLALM+YISVGS PI+EFLEE+ M+NL EI S + +ATKIFVNG W G+
Sbjct: 130 ACGLVKNLALMSYISVGSSSDPIIEFLEEFGMQNLAEIQSSNVNLNEATKIFVNGSWAGV 189
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLK 590
DPE+L+ TL++LRR +D + EVS++RDIR+RE+R++TDAGR+CRPL I ++ L++
Sbjct: 190 THDPEELVNTLKRLRRCVD-VSPEVSVVRDIRERELRLYTDAGRVCRPLFIVQDMRLVIT 248
Query: 591 KRHIDNLKER----DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
K + L+E D +GWQ L+ +G +E ID EEET MI M
Sbjct: 249 KEIVQKLEESKNDPDAPTFGWQDLIANGCIELIDAEEEETVMICM 293
>gi|111283861|gb|ABH09221.1| RNA polymerase II second largest subunit, partial [Sakaguchia
dacryoidea]
Length = 362
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 179/283 (63%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LL +L R V + QK ++ KDF+LE AIK IT+GL+YSLATGNWGDQKK
Sbjct: 17 LLGALFRMLFRKLTKDVYRHLQKCVETQKDFHLENAIKPNTITNGLKYSLATGNWGDQKK 76
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A QA+AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHN+ WGM+CPAETPEG
Sbjct: 77 AMQAKAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQ 136
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+YISVGS +PI+EFLEEW MEN EE + S ++ +TK+FVNG W GIHR
Sbjct: 137 ACGLVKNLALMSYISVGSPSAPIVEFLEEWGMENFEEFS-SDLSRSTKVFVNGVWQGIHR 195
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL-LIAENGSLLLKK 591
DP L+ T++KLRR D I +EVS++RD+R+RE+RI TDAGRICRPL ++ E+ SL LKK
Sbjct: 196 DPAHLVTTIKKLRRCGD-ISAEVSVVRDVRERELRIFTDAGRICRPLYIVEEDMSLALKK 254
Query: 592 RHIDNLK---ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L+ + D + WQ LV +GVVEY+D EEET MI+M
Sbjct: 255 AHIKWLQDGVDDDGKAFTWQGLVDNGVVEYLDAEEEETVMISM 297
>gi|148750941|gb|ABR10068.1| RNA polymerase II second largest subunit [Rhodocybe truncata]
Length = 358
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 172/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 8 LLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 67
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 68 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 127
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 128 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ TLRKLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 187 DPANLVKTLRKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 245
Query: 593 HIDNLKE---RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ L E D Y W+ LV+ G+VE +D EEET MI+M
Sbjct: 246 HVKWLNEGINEDAEEYKWEHLVKGGIVELLDAEEEETVMISM 287
>gi|262302245|gb|ACY43715.1| RNA polymerase subunit 2 [Phrynus marginemaculatus]
Length = 181
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 164/181 (90%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GEEPV TQHQK+FIGKIPIMLRSTYCLLN ++DRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEEPVETQHQKTFIGKIPIMLRSTYCLLNEMSDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATN+VYVFSMKDSKYAYK E RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNSVYVFSMKDSKYAYKAECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|363543590|gb|AEW26273.1| RPB2 [Smittium mucronatum]
Length = 371
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 174/299 (58%), Positives = 222/299 (74%), Gaps = 4/299 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + Y QK ID +DFNL +AIK+ I+ GL+YSLATGNWGDQKK
Sbjct: 11 LLAKLFRNLFRKVTKDMTRYLQKCIDSKRDFNLTMAIKSNTISAGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A Q+R+GVSQVLNR TF+S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG
Sbjct: 71 AMQSRSGVSQVLNRYTFSSTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA+I+VGS SP+L FLEEW+MENLEE++ S+I DATKIFVNG WVGIHR
Sbjct: 131 ACGLVKNLALMAHITVGSDSSPLLMFLEEWAMENLEELSASSIPDATKIFVNGVWVGIHR 190
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKK- 591
D +L+ TL +LRR++D+ EVSI+RD R++E+R+ TDAGR+CRPL + +N LLL K
Sbjct: 191 DANRLVSTLLQLRRKLDLSY-EVSIVRDAREKELRLLTDAGRVCRPLFVVDNLHLLLTKD 249
Query: 592 --RHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLE 648
R I+ + + W L+ G++EY+D EEET+MI M + ++ + Y +E
Sbjct: 250 IVRAIEAMDITHKDAVRWHDLLAEGIIEYLDAEEEETSMICMTPIELKESKLFYEHGIE 308
>gi|156938391|gb|ABU97185.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Yamadazyma mexicana]
Length = 351
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 167/276 (60%), Positives = 208/276 (75%), Gaps = 17/276 (6%)
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 14 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 73
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 74 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 133
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW +E LE+ +PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I
Sbjct: 134 SEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVDTIRSLRRKGD-I 192
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL + ++ G L+LKK HI L + +Y++
Sbjct: 193 SPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNQYSETKGELVLKKEHIKKLTDSEYDD 252
Query: 605 ---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV G++EY+D EEET MIAM
Sbjct: 253 XGYDDEQQSYGWSSLVNDGIIEYVDAEEEETIMIAM 288
>gi|89274886|gb|ABD65884.1| RNA polymerase II second largest subunit, partial [Phallus
hadriani]
Length = 337
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 171/284 (60%), Positives = 218/284 (76%), Gaps = 7/284 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V Y QK ++ K+FN LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 14 LLASLFRMLFRKLTKDVYRYLQKCVETHKEFNFNLAVKANTITNGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR TFAS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 74 SMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS P++EFLEEW +E+LEE A SA + TK+FVNG W+G+HR
Sbjct: 134 ACGLVKNLALMSCISVGSPSPPVIEFLEEWGLESLEENAHSA-SPCTKVFVNGVWLGVHR 192
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I SEVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 193 DPAHLVRTIKKLRRK-DDISSEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 251
Query: 593 HIDNLKERDYNN-----YGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L+++ ++ Y W L++ GV+E +D EEET MIAM
Sbjct: 252 HIKWLQQKHPDDAPNIEYSWDELIKGGVIELLDAEEEETVMIAM 295
>gi|157814066|gb|ABV81778.1| putative DNA-directed RNA polymerase II subunit 2 [Tanystylum
orbiculare]
Length = 181
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTY APLYVDITKTV++ GEEPVTT HQK+FIGKIPIMLRSTYCLL+ LTDRDLTE
Sbjct: 1 RLRNLTYCAPLYVDITKTVIKDGEEPVTTLHQKTFIGKIPIMLRSTYCLLSNLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF MKDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ RGGQ ++KSAIGQRI+AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLTRGGQGVRKSAIGQRILAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|47176765|gb|AAT12537.1| RNA polymerase II second largest subunit [Clavispora lusitaniae]
Length = 365
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 178/313 (56%), Positives = 216/313 (69%), Gaps = 24/313 (7%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R + Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKK
Sbjct: 9 LLASLFRLLFKKLTRDIYNYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKK 68
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ARAGVSQVLNR T++S+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG
Sbjct: 69 AMSARAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 128
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVG+ PIL FLEEW ME LE+ PS D T++FVNG WVG HR
Sbjct: 129 ACGLVKNLSLMSCISVGTASEPILYFLEEWGMEPLEDYVPSNSPDCTRVFVNGVWVGTHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------G 585
+P QL+ T+R+LRR+ DI EVSIIRDIR+RE +I TDAGR+ RPL I ++ G
Sbjct: 189 EPAQLVDTMRRLRRKGDI-SPEVSIIRDIREREFKIFTDAGRVYRPLFIVDDDPESETKG 247
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYID 645
L+L+K HI L +Y+ Y EE W LV GVVEY+D
Sbjct: 248 DLVLQKEHIHKLINSEYDEYD----------------EESQANAYTWSSLVNDGVVEYVD 291
Query: 646 TLEEETTMIAMSP 658
EEET MIAM+P
Sbjct: 292 AEEEETIMIAMTP 304
>gi|156938389|gb|ABU97184.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Yamadazyma mexicana]
Length = 347
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 167/276 (60%), Positives = 208/276 (75%), Gaps = 17/276 (6%)
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S
Sbjct: 10 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSS 69
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVGS
Sbjct: 70 TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSS 129
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW +E LE+ +PS D+T++FVNG WVG HRDP L+ T+R LRR+ D I
Sbjct: 130 SEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVDTIRSLRRKGD-I 188
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN 604
EVSIIRDIR++E +I TDAGR+ RPL + ++ G L+LKK HI L + +Y++
Sbjct: 189 SPEVSIIRDIREKEFKIFTDAGRVYRPLFVVDDNQYSETKGELVLKKEHIKKLTDSEYDD 248
Query: 605 ---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV G++EY+D EEET MIAM
Sbjct: 249 YGYDDEQQSYGWSSLVNDGIIEYVDAEEEETIMIAM 284
>gi|224223882|gb|ACN39679.1| RNA polymerase II subunit 2, partial [Scleroderma sp. AWW260]
Length = 304
Score = 351 bits (901), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HI----DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI ++ D + W+ LV+SG+VE +D EEET MI+M
Sbjct: 248 HIKWLSQGFRDDDGEEFKWEHLVKSGIVELLDAEEEETVMISM 290
>gi|363543582|gb|AEW26269.1| RPB2 [Smittium culicis]
Length = 342
Score = 351 bits (900), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 170/280 (60%), Positives = 214/280 (76%), Gaps = 4/280 (1%)
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y QK ID +DFNL +AIK+ I+ GL+YSLATGNWGDQKKA Q+R GVSQVLNR TFAS
Sbjct: 1 YLQKCIDSKRDFNLTMAIKSNTISAGLKYSLATGNWGDQKKAMQSRTGVSQVLNRYTFAS 60
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNLALMA+I+VGS
Sbjct: 61 TLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGSD 120
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
SP+L FLEEW+MENLEE++ S+I DATKIFVNG WVGIHRD +L+ TL +LRR++D+
Sbjct: 121 SSPLLLFLEEWAMENLEELSASSIPDATKIFVNGVWVGIHRDASRLVSTLLQLRRKLDLS 180
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYG---WQ 608
EVSI+RD R++E+R+ TDAGR+CRPL + +N LLL K + ++ D + W
Sbjct: 181 Y-EVSIVRDAREKELRLLTDAGRVCRPLFVVDNLRLLLTKNVVRAVEAMDITHKDAVRWH 239
Query: 609 VLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLE 648
L+ G++EY+D EEET MI M V ++ + Y +E
Sbjct: 240 DLLAEGIIEYLDAEEEETAMICMSAVELKESRMFYEHGIE 279
>gi|357216631|gb|AET71049.1| RNA polymerase II second largest subunit, partial [Trametes
sanguinea]
Length = 658
Score = 351 bits (900), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+KR
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKR 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLVRGKEDPDFEYKWDNLIKDGVIELLDAEEEETVMICM 290
>gi|262302205|gb|ACY43695.1| RNA polymerase subunit 2 [Hadrurus arizonensis]
Length = 181
Score = 351 bits (900), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 164/181 (90%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+ +GEEPV TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVITEGEEPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF +KDSKYAYK E RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFILKDSKYAYKAECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQR+IAILPYI+QEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGMRKSAIGQRMIAILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302187|gb|ACY43686.1| RNA polymerase subunit 2 [Dinothrombium pandorae]
Length = 181
Score = 351 bits (900), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 163/181 (90%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GEEP+ TQHQK+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS+KDSKYAYK E RSC+EHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSLKDSKYAYKAECRSCIEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM++RG Q KK+AIGQRIIAI+PYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLSRGSQGAKKTAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|357216623|gb|AET71045.1| RNA polymerase II second largest subunit, partial [Trametes
hirsuta]
Length = 657
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 215/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 TMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ TL+KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTLKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLVRGKEDPEFEYKWDNLIKDGVIELLDAEEEETVMICM 290
>gi|262302207|gb|ACY43696.1| RNA polymerase subunit 2 [Hutchinsoniella macracantha]
Length = 181
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 163/181 (90%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAP+YVDITKTV++ GE+PV TQHQK+ IGKIPIMLRS YC+LNGL DRDLTE
Sbjct: 1 RLRNLTYSAPIYVDITKTVIKDGEDPVETQHQKTNIGKIPIMLRSAYCVLNGLNDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD KYAYKTEIRSC+EHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCIEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKSAIGQRII ILPYI+QEIPIMI+FRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQSIKKSAIGQRIIGILPYIRQEIPIMIIFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|357216629|gb|AET71048.1| RNA polymerase II second largest subunit, partial [Trametes
membranacea]
Length = 658
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLGRGKEDPTVEYKWDNLIKDGVIELLDAEEEETVMICM 290
>gi|262302191|gb|ACY43688.1| RNA polymerase subunit 2 [Derocheilocaris typicus]
Length = 181
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/181 (90%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVVR GE+PV T HQK+FI KIPIMLRSTYCLLN LTDRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTVVRDGEDPVETTHQKTFICKIPIMLRSTYCLLNRLTDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF MKD KYAYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDGKYAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQS+KKSAIGQRII ILPYI+QE+P+MIVFRALGFVADRDILEHI+YDFD
Sbjct: 121 TLWVNMLARGGQSIKKSAIGQRIITILPYIRQEVPVMIVFRALGFVADRDILEHIVYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|86559359|gb|ABD04087.1| RNA polymerase II second largest subunit, partial [Hydnum aff.
repandum DSH97.320]
Length = 332
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 165/264 (62%), Positives = 211/264 (79%), Gaps = 3/264 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V + QK ++ KDFN+ +A+K+ IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T
Sbjct: 10 VYRHLQKCVETHKDFNISIAVKSNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYT 69
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
FAS+LSHLRR N+P+GRDGK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LMA ISV
Sbjct: 70 FASTLSHLRRCNTPLGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISV 129
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
GS +P++EFL+EW +E+LEE A +A ATK+FVNG W+G+HRD L+ TLR+LRR+
Sbjct: 130 GSLSAPVIEFLQEWGLESLEENA-NAHGSATKVFVNGVWMGVHRDAPNLVKTLRRLRRK- 187
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNN-YGW 607
D I SEVSI+RDIR++E+R++TDAGR+CRPL I EN LLLKK H++ L ++ + Y W
Sbjct: 188 DDISSEVSIVRDIREKELRLYTDAGRVCRPLFIVENQQLLLKKEHVNMLNDKSRTDPYKW 247
Query: 608 QVLVQSGVVEYIDTLEEETTMIAM 631
LV+ GV+E +D EEET MI M
Sbjct: 248 THLVKDGVIELLDAEEEETVMICM 271
>gi|224223810|gb|ACN39643.1| RNA polymerase II subunit 2, partial [Astraeus hygrometricus]
Length = 354
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 219/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G+VE +D EEET MI+M
Sbjct: 248 HIKWLSQGYRDEDGEEFKWEHLVKTGIVELLDAEEEETVMISM 290
>gi|224223808|gb|ACN39642.1| RNA polymerase II subunit 2, partial [Astraeus hygrometricus]
Length = 362
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 219/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G+VE +D EEET MI+M
Sbjct: 248 HIKWLSQGYRDEDGEEFKWEHLVKTGIVELLDAEEEETVMISM 290
>gi|262302161|gb|ACY43673.1| RNA polymerase subunit 2 [Achelia echinata]
Length = 181
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 172/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDI KTV ++ EEPVTTQH K+FIGKIPIMLRSTYCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDINKTVYKENEEPVTTQHLKTFIGKIPIMLRSTYCLLNDLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF MKDSKYAYK EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKAEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ RGGQ ++KSAIGQRI+AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLTRGGQGVRKSAIGQRILAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|224223836|gb|ACN39656.1| RNA polymerase II subunit 2, partial [Gyroporus castanaeus]
Length = 364
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTXWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV+ G++E +D EEET MI+M
Sbjct: 248 HIKWLSQGYRDDDSEEFKWEHLVKGGIIELLDAEEEETVMISM 290
>gi|94469435|gb|ABF20208.1| RNA polymerase II second largest subunit, partial [Simocybe
serrulata]
Length = 349
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 219/282 (77%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLAGLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS P++EFLEEW +E+LEE A SA TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLALMACISVGSFSGPVIEFLEEWGLESLEENAHSATP-FTKVFVNGVWIGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
D L+ TL++LRR+ D I +EVS++RDIR+RE+R++TDAGR+CRPLLI EN L+L+K+
Sbjct: 190 DAANLVKTLKRLRRR-DDISTEVSVVRDIREREMRVYTDAGRVCRPLLIVENQQLILQKK 248
Query: 593 H---IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H I+N + D N + W+ LV++GV+E +D EEET MI+M
Sbjct: 249 HIRWINNGADDDGNEFKWEQLVKTGVIELLDAEEEETVMISM 290
>gi|262302189|gb|ACY43687.1| RNA polymerase subunit 2 [Daphnia magna]
Length = 181
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV ++GEE V TQHQK+FIGKIPIMLRSTYCLLNG+ DRDL E
Sbjct: 1 RLRNLTYSAPLYVDITKTVHKEGEEQVETQHQKTFIGKIPIMLRSTYCLLNGMNDRDLCE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD K+AYKTEIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKTEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TL+VNM+ARGGQ +KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLYVNMLARGGQGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302209|gb|ACY43697.1| RNA polymerase subunit 2 [Heterometrus spinifer]
Length = 181
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/181 (89%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+++GE+P+ TQHQK+FIGKIPIMLRSTYCLL+GLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKEGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF +KDSKYAYK E RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFILKDSKYAYKAECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQR+IAILPYI+QEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGMRKSAIGQRMIAILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|262302165|gb|ACY43675.1| RNA polymerase subunit 2 [Abacion magnum]
Length = 181
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/181 (90%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKT+++ GE+P+ TQHQK FIGKIPIMLRS YCLLN LTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTIIKDGEDPIETQHQKMFIGKIPIMLRSAYCLLNELTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK+EIRSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKSEIRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRII +LPYIKQEIPI+IVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIGVLPYIKQEIPIIIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|224223826|gb|ACN39651.1| RNA polymerase II subunit 2, partial [Calostoma sarasinii]
Length = 362
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 219/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMTAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G+VE +D EEET MI+M
Sbjct: 248 HIKWLSQGYRDEDGEEFKWEHLVKNGIVELLDAEEEETVMISM 290
>gi|170799523|gb|ACB38553.1| RNA polymerase II subunit, partial [Pichia nakazawae var.
nakazawae]
Length = 336
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/298 (59%), Positives = 218/298 (73%), Gaps = 23/298 (7%)
Query: 353 LLASLGR---RELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGD 409
LLA+L R R+L RD Y Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+
Sbjct: 1 LLANLFRILFRKLT-RDIY--NYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGE 57
Query: 410 QKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETP 469
QKKA +RAGVSQVLNR T++S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETP
Sbjct: 58 QKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETP 117
Query: 470 EGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVG 529
EG A GLVKNL+LM+ ISVG+ PIL FLEEW +E LE+ +PS D+T++FVNG WVG
Sbjct: 118 EGQACGLVKNLSLMSCISVGTSSEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVG 177
Query: 530 IHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN----- 584
HRDP L+ T+R LRR+ D I EVSIIRDIR+RE +I TDAGR+ RPL + ++
Sbjct: 178 THRDPASLVDTIRSLRRKGD-ISPEVSIIRDIREREFKIFTDAGRVYRPLFVVDDNPYSE 236
Query: 585 --GSLLLKKRHIDNLKERDYNN---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
G L+L K HI L + +Y+ YGW LV GV+EY+D EEET MIAM
Sbjct: 237 TKGELILNKTHIKKLMDSEYDEFSYDDEQEAYGWSSLVSEGVIEYVDAEEEETIMIAM 294
>gi|148750939|gb|ABR10067.1| RNA polymerase II second largest subunit [Clitopilus fallax]
Length = 358
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 217/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 8 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 67
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 68 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 127
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 128 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ TLRKLRR+ D I EVSI+RDIR++E+R++TDAGR+CRPL I EN L+LKK+
Sbjct: 187 DPANLVKTLRKLRRK-DDISPEVSIVRDIREKELRLYTDAGRVCRPLFIVENQELMLKKK 245
Query: 593 HI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ +N + Y W+ LV+ GV+E +D EEET MI+M
Sbjct: 246 HVRWLNNGADDSGEEYKWEHLVKGGVIELLDAEEEETVMISM 287
>gi|357216627|gb|AET71047.1| RNA polymerase II second largest subunit, partial [Trametes
polyzona]
Length = 605
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A A TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE Y W L++ GV+E +D EEET MI+M
Sbjct: 249 HIENLVRGKEDPKFEYNWDNLIKDGVIELLDAEEEETVMISM 290
>gi|357216625|gb|AET71046.1| RNA polymerase II second largest subunit, partial [Trametes
villosa]
Length = 641
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 215/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 TMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLVRGKEEPEFEYKWDNLIKDGVIELLDAEEEETVMICM 290
>gi|262302227|gb|ACY43706.1| RNA polymerase subunit 2 [Lynceus sp. 'Lyn']
Length = 181
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/181 (91%), Positives = 174/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV R+GE+PV TQHQK+FIGKIPIMLRSTYCLLNGL DRDL E
Sbjct: 1 RLRNLTYSAPLYVDITKTVYREGEDPVETQHQKTFIGKIPIMLRSTYCLLNGLNDRDLCE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYF+INGSEKVLIAQEKMATNTVYVFS+KDSKYAYK EIRS LEHSSRP S
Sbjct: 61 LNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSVKDSKYAYKAEIRSYLEHSSRPVS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TL+VNM+ARGGQS+KKSAIGQRIIAI+PYIKQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLYVNMLARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|67475595|ref|XP_653488.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56470445|gb|EAL48102.1| DNA-directed RNA polymerase subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449706687|gb|EMD46481.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
histolytica KU27]
Length = 1170
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 237/702 (33%), Positives = 352/702 (50%), Gaps = 76/702 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPP 62
E W +I+A+F E GLV+QQL S++ FI+ I D+ +I++ AE S E
Sbjct: 13 EQFWYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEH 72
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
+L + K + K + + + P+EARLR+LTYS L V T+ + G E +TT
Sbjct: 73 TIVLTDPIFHFPKVSTGSK--ASASLFPHEARLRSLTYSCQLEVKAKDTIRKNGAEEITT 130
Query: 123 QHQKSFIGKIPIMLRSTYCLLN-GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
K I IP ML+S C L +T + +EC + GGYFII GSEKV+IAQEKMA
Sbjct: 131 V-PKIDIASIPSMLKSDVCRLKRCVTQPSMINKDECSFEQGGYFIIKGSEKVVIAQEKMA 189
Query: 182 TNTVYVFSMKDS-KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI-IAI 239
NTV VF D KY Y+ I S + T + ++ L KS + ++ +
Sbjct: 190 PNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDY-----PKLDKSRLKIKVPVLS 244
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL--DEAFVIQEQNVA 297
L + ++P++++F ALG+ D+ I+E I +D +D EM +V ++ +E ++
Sbjct: 245 LSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDARRW 304
Query: 298 LNFIGARGARPGVTK------ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
L + + GV + ++ + E L+K++LPH+G +F KA FLGYM +
Sbjct: 305 LGEHSKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQFLGYMTNH 362
Query: 352 LLLASLGRRELDDRDHYVR--------------------------MYAQKFIDRGKDFNL 385
L G+R DDRDH R QK + K
Sbjct: 363 FLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKALEY 422
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ IT +L TGNW Q ++R GV+QVL+RLTF S+L++LR+++SP+
Sbjct: 423 AKPLSFPTITTDFTKALGTGNW-PQPGGKESRHGVAQVLSRLTFTSALAYLRKISSPVEG 481
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
K KPRQLHNT WG ICPAETPEG + GLVK L+LMA I+V Q + E E +
Sbjct: 482 KRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVDEIKEALDCQ 541
Query: 506 ---NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQ--MDIIVSEVSIIRD 560
N+ + + + TK+F+NG W+ P++L+ L+ R+ + +S++ D
Sbjct: 542 YVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNSTKGKVKKVMSMVLD 601
Query: 561 IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQV-LVQSGVVEYI 619
+E+RI+TDAGR RPL N NN + + L QS + E
Sbjct: 602 QLHKELRIYTDAGRCTRPLFTVSN------------------NNGHYTLNLKQSQITELC 643
Query: 620 DTLEEE---TTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
L+ E T W + G++EY+D EEE +MIAM P
Sbjct: 644 SRLDNESNGTEKTKFWNNFLSKGIIEYVDADEEEMSMIAMFP 685
>gi|318135796|gb|ADV41644.1| RNA polymerase II second largest subunit, partial [Clitopilus
popinalis]
Length = 357
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 218/282 (77%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ TL+KLRR+ D I EVSI+RDIR++E+R++TDAGR+CRPL I EN L+LKK+
Sbjct: 186 DPANLVKTLKKLRRK-DDISPEVSIVRDIREKELRLYTDAGRVCRPLFIVENXELVLKKK 244
Query: 593 HI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI +N E + Y W+ LV+ G++E +D EEET MI+M
Sbjct: 245 HIRWLNNGVEDNGEGYKWEHLVKGGIIELLDAEEEETVMISM 286
>gi|83415501|gb|ABC17958.1| RNA polymerase II second largest subunit, partial [Boothiomyces
macroporosum]
Length = 714
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/280 (61%), Positives = 212/280 (75%), Gaps = 5/280 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LL L R + Y QK ++ GK+FNL LA+K+ IIT+GL+YSLATGNWGDQKK
Sbjct: 10 LLGGLFRMLFKKLTKDISKYVQKSMELGKEFNLSLAVKSGIITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
QARAGVSQVLNR TFAS+LSHLRR+N+PIGRDGKLAKPRQLH+T WGM+CPAETPEG
Sbjct: 70 FMQARAGVSQVLNRYTFASTLSHLRRLNTPIGRDGKLAKPRQLHDTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LMAYI+VGS P+LEFL+EW+ME+LE+I P I ATK+F+NG WVG+HR
Sbjct: 130 ACGLVKNLSLMAYITVGSASRPVLEFLDEWTMESLEDINPGQIPSATKVFLNGAWVGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLI-AENGSLLLKK 591
P++L+ LR LRR +D I EVS++ D+RD+E+RI+TD GRICR L I + LLL K
Sbjct: 190 YPDELVNNLRTLRRSLD-ISPEVSVVHDVRDKELRIYTDPGRICRSLFIVSPEQRLLLTK 248
Query: 592 RHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
++ L ++ W L+ +G+VEYIDT EEET MI M
Sbjct: 249 PIVEALNSKEMT---WNDLLANGIVEYIDTEEEETIMIVM 285
>gi|357216637|gb|AET71052.1| RNA polymerase II second largest subunit, partial [Trametes
elegans]
Length = 674
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A A TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++NL KE +Y W L++ GV+E +D EEET MI M
Sbjct: 249 HVENLVRGKEEPEFDYKWDNLIRDGVIEMLDAEEEETVMICM 290
>gi|70606496|ref|YP_255366.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
DSM 639]
gi|449066708|ref|YP_007433790.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
N8]
gi|449068982|ref|YP_007436063.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
Ron12/I]
gi|73920765|sp|P11513.2|RPOB_SULAC RecName: Full=DNA-directed RNA polymerase subunit B
gi|68567144|gb|AAY80073.1| DNA directed RNA polymerase subunit B [Sulfolobus acidocaldarius
DSM 639]
gi|449035216|gb|AGE70642.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
N8]
gi|449037490|gb|AGE72915.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
Ron12/I]
Length = 1126
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 242/670 (36%), Positives = 353/670 (52%), Gaps = 84/670 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L E+ W + ++F +GLVRQ LDSF++F++ +Q+++ + +I TEV
Sbjct: 2 LDTESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI---------VTEV-- 50
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSP-SPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
P +K +I KP+ E D P + P EARLRNLTYS+P+++ + EP
Sbjct: 51 -PGLKIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEGEP 109
Query: 120 VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+ +IG +PIML+S + L L E+ E P DPGGYFI+NGSEKV+IAQE
Sbjct: 110 IEI-----YIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQED 164
Query: 180 MATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
+ATN V V K S + H ++ TS+ + + LK S I Q A
Sbjct: 165 LATNRVLVDYGKSG---------SNITHVAKVTSSAAGYRVQVMIERLKDSTI-QISFAT 214
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
+P IP I+ RALGFV DRDI+ + D P++ + PSL++A I AL+
Sbjct: 215 VP---GRIPFAIIMRALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEALD 268
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
FIG R A G +E RI+ A +++ K LPH+G S KK Y+L V+++L LGR
Sbjct: 269 FIGNRVA-IGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGR 327
Query: 360 RELDDRDHY----VRMYAQKFID----------------------RGKDFNLELAIKTKI 393
RE DD+DHY VR+ F RG+ +L ++ I
Sbjct: 328 REPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADI 387
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT+ +R++LATGNW R GVSQ+L+R + S LSHLRRV S + R + R
Sbjct: 388 ITERIRHALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEAR 441
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
LH T WG +CP ETPEG GLVKNLAL+A +SVG S + E + ++E++
Sbjct: 442 DLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVERVAYELGVVSVEDVI-R 500
Query: 514 AIADA----------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
I++ +K+++NG +G + D ++L +R+ RRQ + EV++ D
Sbjct: 501 RISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGK-LSDEVNVAYIATD 559
Query: 564 --REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
E+ I+ DAGR+ RPL+I NG+ L+ I LK + + LV+ G +E+ID
Sbjct: 560 YLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEIT---FDDLVKQGKIEFIDA 616
Query: 622 LEEETTMIAM 631
EEE +A+
Sbjct: 617 EEEENAYVAL 626
>gi|224223876|gb|ACN39676.1| RNA polymerase II subunit 2, partial [Scleroderma macalpinei]
Length = 327
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV+SG++E +D EEET MI M
Sbjct: 248 HIKWLSQGYRDDDGEEFKWEHLVKSGIIELLDAEEEETVMICM 290
>gi|262302247|gb|ACY43716.1| RNA polymerase subunit 2 [Peripatoides novaezealandiae]
Length = 181
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/181 (88%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDI KT V++GEEP+ TQHQK FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDINKTXVKEGEEPIETQHQKXFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATN VYVFSMKDSKYAYK EIRSCLE+SSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNNVYVFSMKDSKYAYKAEIRSCLENSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
T+WVNMMA+GGQ ++KSAIGQRI+ ILPYI+QEIP+M++FRALGFVADRDILEHIIYDFD
Sbjct: 121 TMWVNMMAKGGQGVRKSAIGQRIVGILPYIRQEIPVMVIFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|357216647|gb|AET71057.1| RNA polymerase II second largest subunit, partial [Earliella
scabrosa]
Length = 658
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 171/282 (60%), Positives = 214/282 (75%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+F L LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFVLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVG+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ TLRKLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LL++KR
Sbjct: 190 DPASLVKTLRKLRRK-DDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLVQKR 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLARGKEDPTFEYNWDSLIKEGVIELLDAEEEETVMICM 290
>gi|262302167|gb|ACY43676.1| RNA polymerase subunit 2 [Amblyomma sp. 'Amb2']
Length = 181
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 164/181 (90%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+++ EE V TQHQK+FIGKIPIMLRSTYCLLN LTDRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTVLKENEEAVETQHQKTFIGKIPIMLRSTYCLLNNLTDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF MKDSKYAYK E RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKAECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|115291768|gb|ABI93209.1| RNA polymerase II second largest subunit, partial [Leucoagaricus
barssii]
Length = 363
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 220/282 (78%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S + TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHST-SPCTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP+ L+ T++KLRR+ D I EVS++RDIR++E+RI+TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPQNLVKTIKKLRRK-DDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 H---IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H I+N + + N Y W+ L++ GV+E +D EEET MI+M
Sbjct: 249 HIRWINNGCDDEGNEYKWEQLIKGGVIELLDAEEEETVMISM 290
>gi|157814058|gb|ABV81774.1| putative DNA-directed RNA polymerase II subunit 2 [Podura aquatica]
Length = 181
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/181 (88%), Positives = 176/181 (97%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDI KTV++ GE+P+ T HQK+FIGKIPIMLRSTYC+L+GLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDIAKTVIKDGEDPLKTTHQKTFIGKIPIMLRSTYCILSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYF++NGSEKVLIAQEKMATNTVYVFSMKDSKYAYK EIRSCLEHSSRP+S
Sbjct: 61 LNECPLDPGGYFVVNGSEKVLIAQEKMATNTVYVFSMKDSKYAYKAEIRSCLEHSSRPSS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM++RGGQSLKKS+IGQRIIAI+PYIKQEIPIMI+FRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLSRGGQSLKKSSIGQRIIAIVPYIKQEIPIMILFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|318135729|gb|ADV41630.1| RNA polymerase II second largest subunit, partial [Inocephalus sp.
MCA2479]
Length = 352
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 168/267 (62%), Positives = 213/267 (79%), Gaps = 7/267 (2%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y QK ++ KDFNL LA+K + IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T
Sbjct: 18 VYRYLQKCVESHKDFNLALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYT 77
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNLALMA ISV
Sbjct: 78 YASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISV 137
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
GS +P++EFLEEW +E+LEE A S+I TK+FVNG W+G+HRDP L+ T+RKLRR+
Sbjct: 138 GSYSAPVIEFLEEWGLESLEENAHSSIP-CTKVFVNGVWMGVHRDPANLVKTIRKLRRK- 195
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH----IDNLKERDYNN 604
D I EVS++RDIR++E+R++TDAGR+CRPLLI EN L L+K+H IDN + +
Sbjct: 196 DDISPEVSVVRDIREKELRLYTDAGRVCRPLLIVENQQLALQKKHIKWLIDNCND-EGEE 254
Query: 605 YGWQVLVQSGVVEYIDTLEEETTMIAM 631
Y W+ LV+ GV+E +D EEET MI+M
Sbjct: 255 YKWEHLVKGGVIELLDAEEEETVMISM 281
>gi|357216621|gb|AET71044.1| RNA polymerase II second largest subunit, partial [Trametes
suaveolens]
Length = 631
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 217/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLGLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 TMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I SEVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISSEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE +Y W L++ GV+E +D EEET +I M
Sbjct: 249 HIENLVRGKEDPEYDYKWDNLIKDGVIELLDAEEEETVIICM 290
>gi|262302157|gb|ACY43671.1| RNA polymerase subunit 2 [Aphonopelma chalcodes]
Length = 181
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/181 (91%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV++ GEEPV TQ K FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKDGEEPVETQLPKIFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATN+VYVF MKDSKYAYKTE RSCLEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNSVYVFQMKDSKYAYKTECRSCLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|320172580|gb|ADW24173.1| RNA polymerase II second largest subunit [Donkioporia expansa]
Length = 683
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FN+ LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 17 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNVSLAVKHNTITNGLKYSLATGNWGDQKK 76
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 77 TMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 136
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVG+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HR
Sbjct: 137 ACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHR 195
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP +L+ TLRKLRR+ DI EVS++RDIR+RE+R++TDAGR+CRPL I EN LL++KR
Sbjct: 196 DPVKLVSTLRKLRRKDDINC-EVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKR 254
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL K+ Y W L++ GV+E +D EEET MI+M
Sbjct: 255 HIENLVRAKDDPTITYNWDNLLKDGVIELLDAEEEETVMISM 296
>gi|357216639|gb|AET71053.1| RNA polymerase II second largest subunit, partial [Trametes
pavonia]
Length = 609
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++N+ KE Y W L++ GV+E +D EEET MI M
Sbjct: 249 HVENILRGKEDPAFEYKWDNLIKDGVIELLDAEEEETVMICM 290
>gi|405780119|gb|AFS28630.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida duobushaemulonii]
Length = 322
Score = 349 bits (896), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 169/276 (61%), Positives = 205/276 (74%), Gaps = 17/276 (6%)
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S
Sbjct: 1 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 60
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 61 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTA 120
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PIL FLEEW ME LE+ PS D T++FVNG WVG HR+P QL+ T+R+LRR+ D I
Sbjct: 121 SEPILYFLEEWGMEQLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRRGD-I 179
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY-- 602
EVSIIRDIR+RE +I TDAGR+ RPL I ++ G L+L+K H+ L +Y
Sbjct: 180 SPEVSIIRDIREREFKIFTDAGRVYRPLFIVDDDPESETKGELVLQKEHVHKLMNSEYDE 239
Query: 603 -------NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N+Y W LV GVVEY+D EEET MIAM
Sbjct: 240 FDDDPLSNHYTWSSLVNDGVVEYVDAEEEETIMIAM 275
>gi|194306411|dbj|BAG55600.1| RNA polymerase II second largest subunit [Lentinus squarrosulus]
Length = 287
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/266 (62%), Positives = 210/266 (78%), Gaps = 5/266 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T
Sbjct: 13 VYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYT 72
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISV
Sbjct: 73 YASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISV 132
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
G+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HRDP L+ TLRKLRR+
Sbjct: 133 GTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHRDPVSLVRTLRKLRRK- 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNY 605
D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+KRHI+NL KE +Y
Sbjct: 191 DDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKRHIENLVRGKEDPEFSY 250
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L++ GV+E +D EEET MI M
Sbjct: 251 NWDNLIKEGVIELLDAEEEETVMICM 276
>gi|167385143|ref|XP_001737225.1| DNA-directed RNA polymerase II subunit RPB2 [Entamoeba dispar
SAW760]
gi|165900064|gb|EDR26512.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
dispar SAW760]
Length = 1170
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 235/699 (33%), Positives = 351/699 (50%), Gaps = 76/699 (10%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDL-QAEAQHTSTEVETPPRYL 65
W +I+A+F E GLV+QQL S++ FI+ I D+ +I++ AE S E +
Sbjct: 16 WYLIDAHFKENGLVKQQLSSYNNFIKKVRDVITSDTTKIEISNAEVLGISANDEEEHTIV 75
Query: 66 LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
L + K + K + + + P+EARLR+LTY+ L V T+ + G E +TT
Sbjct: 76 LTDPIFHFPKVSTGSK--ASASLFPHEARLRSLTYACQLEVKAKDTIRKNGTEEITTV-P 132
Query: 126 KSFIGKIPIMLRSTYCLLN-GLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNT 184
K I IP ML+S C L +T + +EC + GGYFII GSEKV+IAQEKMA NT
Sbjct: 133 KIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSEKVVIAQEKMAPNT 192
Query: 185 VYVFSMKDS-KYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI-IAILPY 242
V VF D KY Y+ I S + T + ++ L KS + ++ + L
Sbjct: 193 VLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDY-----PKLDKSRLKIKVPVLTLSR 247
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL--DEAFVIQEQNVALNF 300
+ ++P++++F ALG+ D+ I+E I +D +D EM +V ++ +E ++ L
Sbjct: 248 MDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTEDARRWLGE 307
Query: 301 IGARGARPGVTK------ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
+ + GV + ++ + E L+K++LPH+G +F KA FLGYM + L
Sbjct: 308 HSKKTNKEGVIEIVSENIQKLQRDGTEKLKKDLLPHIGTDNF--ESKAQFLGYMTNHFLS 365
Query: 355 ASLGRRELDDRDHYVR--------------------------MYAQKFIDRGKDFNLELA 388
G+R DDRDH R QK + K
Sbjct: 366 VYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNKTLEYAKP 425
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
+ IT +L TGNW Q ++R GV+QVL+RLTF S+L++LR+++SP+ K
Sbjct: 426 LSFPTITSDFTKALGTGNW-PQPGGKESRHGVAQVLSRLTFTSALAYLRKISSPVEGKRK 484
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME--- 505
KPRQLHNT WG ICPAETPEG + GLVK L+LMA I+V Q + E E +
Sbjct: 485 TQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVDEIKEALDCQYVC 544
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQ--MDIIVSEVSIIRDIRD 563
N+ + + + TK+F+NG W+ P++L+ L+ R+ + +S++ D
Sbjct: 545 NINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNSTKGKVKKVMSMVLDQLH 604
Query: 564 REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQV-LVQSGVVEYIDTL 622
+E+RI+TDAGR RPL N NN + + L QS + E L
Sbjct: 605 KELRIYTDAGRCTRPLFTVSN------------------NNGHYTLNLKQSQITELCSRL 646
Query: 623 EEE---TTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ E T W + G++EY+D EEE +MIAM P
Sbjct: 647 DNESNGTEKTKFWNNFLSKGIIEYVDADEEEMSMIAMFP 685
>gi|89280953|gb|ABC96915.2| RNA polymerase II second largest subunit [Lyophyllum leucophaeatum]
Length = 358
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 217/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 8 LLANLFRMLFRKLTKDVYRYLQKCVESHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 67
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 68 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 127
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 128 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN L L+K+
Sbjct: 187 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKK 245
Query: 593 HI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI +N +D Y W+ LV+ GVVE +D EEET MI+M
Sbjct: 246 HIRWLNNGYNKDGEEYKWESLVKGGVVELLDAEEEETVMISM 287
>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
Length = 1126
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 237/662 (35%), Positives = 357/662 (53%), Gaps = 81/662 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ ++F +GLVRQ LDSF++F++ +Q+I+++ +I TE+ P +
Sbjct: 9 WEIVKSFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEI---------ITEI---PGLKI 56
Query: 67 KFEQIYLSKPTHWEKD-GSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
K +I +P E D G P + P EARLRNLTY+ PLY+ + EP+
Sbjct: 57 KLGKIRYDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYLTMIPIENNIEGEPIEV--- 113
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
+IG +PIML+S + +T +L ++ E P DPGGYFI+NG+EKV++AQE +ATN V
Sbjct: 114 --YIGDLPIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVNGTEKVIVAQEDLATNRV 171
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
V K S + H ++ TS + + LK S+I Q A +P
Sbjct: 172 LVDYGKSG---------SNITHVAKITSAAAGYRVQVVIERLKDSSI-QVSFATVP---G 218
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305
+IP +I+ RALGF D+DI+ + D PE+ + PSL++A I AL+FIG R
Sbjct: 219 KIPFVIMMRALGFTTDKDIVYAVSLD---PEIQNELLPSLEQASSITTVEDALDFIGNRI 275
Query: 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 365
A G +E RI+ A +I+ K LPH+G S KK Y+L V++LL LGRR+ DD+
Sbjct: 276 A-IGQKRENRIQRAEQIIDKYFLPHIGTSPEDRKKKGYYLAAAVNKLLELYLGRRQPDDK 334
Query: 366 DHY----VRMYAQKFID----------------------RGKDFNLELAIKTKIITDGLR 399
DHY VR+ F RG+ +L ++ IIT+ +R
Sbjct: 335 DHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKAKVRGRRLSLTALVRADIITERVR 394
Query: 400 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTL 459
++LATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T
Sbjct: 395 HALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQ 448
Query: 460 WGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA- 518
WG +CP ETPEG GLVKNLAL+A +SVG S I + + E + + EE+ A+
Sbjct: 449 WGRMCPFETPEGPNSGLVKNLALLAQVSVGINESSIEKVIYEQGVISQEELIDRLSAEED 508
Query: 519 -------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRIH 569
+K+++NG +G + D ++L +R+LRR I EV++ + + E+ I+
Sbjct: 509 INKYLNWSKVYLNGRLLGYYPDGKELAEKIRELRRSGK-ISDEVNVAHIVTEYINEVHIN 567
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
D GR+ RPL+I ++G L+ + I+ L++ + + LV+ G +E++D EEE I
Sbjct: 568 CDGGRVRRPLIIVKDGKPLVSEDDIEKLRKGEIT---FDDLVKQGKIEFLDAEEEENAYI 624
Query: 630 AM 631
A+
Sbjct: 625 AL 626
>gi|224223842|gb|ACN39659.1| RNA polymerase II subunit 2, partial [Gyroporus sp. AWW-2009a]
Length = 347
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV+ G++E +D EEET MI+M
Sbjct: 248 HIRWLSQGYRDDDGEEFKWEQLVKGGIIELLDAEEEETVMISM 290
>gi|224223816|gb|ACN39646.1| RNA polymerase II subunit 2, partial [Calostoma fuscum]
Length = 362
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 219/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G+VE +D EEET MI+M
Sbjct: 248 HIKWLGQGYRDDDGEEFKWEHLVKNGIVELLDAEEEETVMISM 290
>gi|55584698|gb|AAV53580.1| RNA polymerase II second largest subunit [Rhodocollybia maculata]
Length = 721
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/282 (59%), Positives = 217/282 (76%), Gaps = 4/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFRKLTKDVYRYMQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSTTPTMTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
+P L+ T+RKLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I E+ L+L+K+
Sbjct: 190 EPANLVKTIRKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVEDQQLVLQKK 248
Query: 593 HI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ N D ++ W+ LV+SG++E +D EEET MI+M
Sbjct: 249 HVRWLQNGHNDDSADFKWEHLVKSGIIELLDAEEEETVMISM 290
>gi|99866478|gb|ABF67584.1| RNA polymerase II second largest subunit, partial [Auricularia
auricula-judae]
Length = 690
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 168/282 (59%), Positives = 217/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V Y QK ++ KDFNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLASLFRMLFRKLTKDVYRYLQKCVEARKDFNLNLAVKANTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR TFAS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSAKAGVSQVLNRYTFASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S I +TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSGIP-STKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I E+ L++KK
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEDQQLVIKKH 248
Query: 593 HID---NLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++ N ++ ++ W L+++G++E +D EEET MI M
Sbjct: 249 HVEWIQNKEDEHGASFKWDNLIKTGLIELLDAEEEETVMICM 290
>gi|300394772|gb|ADK11924.1| DNA-directed RNA polymerase II subunit two, partial
[Camarophyllopsis schulzeri]
Length = 354
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 172/282 (60%), Positives = 219/282 (77%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVENHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A SAI TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSAIP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 248
Query: 593 HIDNL--KERDYNN-YGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L E D N+ + W+ LV+ G++E +D EEET MI+M
Sbjct: 249 HIRWLIQGENDNNDEFKWEQLVKGGIIELLDAEEEETVMISM 290
>gi|224223832|gb|ACN39654.1| RNA polymerase II subunit 2, partial [Gyroporus castanaeus]
Length = 363
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV+ G++E +D EEET MI+M
Sbjct: 248 HIKWLSQGYRDDDGEEFKWEQLVKGGIIELLDAEEEETVMISM 290
>gi|157814056|gb|ABV81773.1| putative DNA-directed RNA polymerase II subunit 2 [Cypridopsis
vidua]
Length = 181
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 162/181 (89%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTY+APLYVDITK++V +GE+P ++H K+FIGKIPIMLRSTYCLLNGLTDRDLTE
Sbjct: 1 RLRNLTYAAPLYVDITKSMVVEGEDPRESKHNKTFIGKIPIMLRSTYCLLNGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
L+ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSC+EHSSRPTS
Sbjct: 61 LSECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCIEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNMMARGGQ +KKSAIGQRII +LPY+KQEIPIMIVFRALGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMMARGGQGVKKSAIGQRIIGVLPYVKQEIPIMIVFRALGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|300394746|gb|ADK11911.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
nigrescens]
Length = 475
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 17 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 76
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 77 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 136
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 137 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 195
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 196 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 254
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 255 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 297
>gi|55273995|gb|AAV48868.1| RNA polymerase II second largest subunit [Calostoma cinnabarinum]
Length = 680
Score = 348 bits (894), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 171/283 (60%), Positives = 219/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+G +AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGXIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 248
Query: 593 HIDNLKE--RDYNN--YGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L + RD N + W+ LV++G+VE +D EEET MI+M
Sbjct: 249 HIQWLSQGYRDEANEEFKWEHLVKNGIVELLDAEEEETVMISM 291
>gi|388654335|gb|AFK77845.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 346
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 4 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 63
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 64 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 123
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 124 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 182
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 183 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 241
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 242 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 284
>gi|388654278|gb|AFK77818.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 348
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 5 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 64
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 65 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 124
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 125 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 183
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 184 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 242
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 243 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 285
>gi|46669|emb|CAA32924.1| RNA polymerase subunit B (AA 1-1126) [Sulfolobus acidocaldarius]
Length = 1126
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 241/670 (35%), Positives = 353/670 (52%), Gaps = 84/670 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L E+ W + ++F +GLVRQ LDSF++F++ +Q+++ + +I TEV
Sbjct: 2 LDTESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI---------VTEV-- 50
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSP-SPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
P +K +I KP+ E D P + P EARLRNLTYS+P+++ + EP
Sbjct: 51 -PGLKIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEGEP 109
Query: 120 VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+ +IG +PIML+S + L L E+ E P DPGGYFI+NGSEK++IAQE
Sbjct: 110 IEI-----YIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKMIIAQED 164
Query: 180 MATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
+ATN V V K S + H ++ TS+ + + LK S I Q A
Sbjct: 165 LATNRVLVDYGKSG---------SNITHVAKVTSSAAGYRVQVMIERLKDSTI-QISFAT 214
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
+P IP I+ RALGFV DRDI+ + D P++ + PSL++A I AL+
Sbjct: 215 VP---GRIPFAIIMRALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEALD 268
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
FIG R A G +E RI+ A +++ K LPH+G S KK Y+L V+++L LGR
Sbjct: 269 FIGNRVA-IGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGR 327
Query: 360 RELDDRDHY----VRMYAQKFID----------------------RGKDFNLELAIKTKI 393
RE DD+DHY VR+ F RG+ +L ++ I
Sbjct: 328 REPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADI 387
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT+ +R++LATGNW R GVSQ+L+R + S LSHLRRV S + R + R
Sbjct: 388 ITERIRHALATGNWVG------GRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEAR 441
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
LH T WG +CP ETPEG GLVKNLAL+A +SVG S + E + ++E++
Sbjct: 442 DLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVERVAYELGVVSVEDVI-R 500
Query: 514 AIADA----------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
I++ +K+++NG +G + D ++L +R+ RRQ + EV++ D
Sbjct: 501 RISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGK-LSDEVNVAYIATD 559
Query: 564 --REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
E+ I+ DAGR+ RPL+I NG+ L+ I LK + + LV+ G +E+ID
Sbjct: 560 YLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEIT---FDDLVKQGKIEFIDA 616
Query: 622 LEEETTMIAM 631
EEE +A+
Sbjct: 617 EEEENAYVAL 626
>gi|388654215|gb|AFK77787.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 351
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 3 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 62
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 63 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 122
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 123 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 181
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 182 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 240
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 241 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 283
>gi|170799407|gb|ACB38495.1| RNA polymerase II subunit, partial [Candida ontarioensis]
Length = 332
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/273 (61%), Positives = 204/273 (74%), Gaps = 14/273 (5%)
Query: 372 YAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS 431
Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA ARAGVSQVLNR T++S
Sbjct: 10 YMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSS 69
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+
Sbjct: 70 TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTP 129
Query: 492 PSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII 551
PI FLEEW ME LE+ PS DAT++FVNG WVG HR+P QL+ T+R LRR+ D I
Sbjct: 130 SEPISYFLEEWGMEPLEDYVPSNSPDATRVFVNGVWVGTHREPAQLVDTMRNLRRRGD-I 188
Query: 552 VSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDY-- 602
EVSIIRDIR++E +I TDAGR+ RPL I ++ G L+LKK H+ L+ +Y
Sbjct: 189 SPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPDSETKGELMLKKEHVHQLRSSEYDD 248
Query: 603 ----NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
N Y W LV GVVEY+D EEET MIAM
Sbjct: 249 FDDENAYTWSSLVSDGVVEYVDAEEEETIMIAM 281
>gi|388654346|gb|AFK77850.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 350
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|388654172|gb|AFK77766.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654205|gb|AFK77782.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654219|gb|AFK77789.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654237|gb|AFK77798.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654333|gb|AFK77844.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654352|gb|AFK77853.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 348
Score = 348 bits (893), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 5 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 64
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 65 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 124
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 125 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 183
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 184 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 242
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 243 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 285
>gi|357216651|gb|AET71059.1| RNA polymerase II second largest subunit, partial [Coriolopsis
gallica]
Length = 657
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 215/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVG+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ TLRKLRR+ DI EVS++RDIR+RE+R++TDAGR+CRPL I EN LL++KR
Sbjct: 190 DPVSLVKTLRKLRRKDDINC-EVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLVQKR 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL K+ Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLVRGKDDPEFPYNWDNLIKEGVIELLDAEEEETVMICM 290
>gi|388654261|gb|AFK77810.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654306|gb|AFK77831.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654331|gb|AFK77843.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654358|gb|AFK77856.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 355
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|388654203|gb|AFK77781.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 349
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 6 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 65
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 66 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 125
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 126 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 184
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 185 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 243
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 244 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 286
>gi|170799427|gb|ACB38505.1| RNA polymerase II subunit, partial [Candida diddensiae]
gi|170799429|gb|ACB38506.1| RNA polymerase II subunit, partial [Candida diddensiae]
Length = 353
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 170/283 (60%), Positives = 210/283 (74%), Gaps = 19/283 (6%)
Query: 365 RDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
RD Y Y Q+ ++ K+FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVL
Sbjct: 12 RDIY--NYMQRCVENDKEFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVL 69
Query: 425 NRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA 484
NR T++S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+
Sbjct: 70 NRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMS 129
Query: 485 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKL 544
ISVG+ PIL FLEEW +E LE+ +PS D+T++FVNG WVG HRDP L+ T+R L
Sbjct: 130 CISVGTSSEPILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPASLVDTIRSL 189
Query: 545 RRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNL 597
RR+ D I EVSIIRDIR+RE +I TDAGR+ RPL + ++ G L+L K HI L
Sbjct: 190 RRKGD-ISPEVSIIRDIREREFKIFTDAGRVYRPLFVVDDNPYSETKGDLVLNKDHIKKL 248
Query: 598 KERDYNN---------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
+ +Y+ YGW LV+ GV+EY+D EEET MIAM
Sbjct: 249 MDSEYDEFSYDDEQEAYGWSSLVRDGVIEYVDAEEEETIMIAM 291
>gi|388654174|gb|AFK77767.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654209|gb|AFK77784.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654282|gb|AFK77820.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654292|gb|AFK77824.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654296|gb|AFK77826.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654314|gb|AFK77835.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654348|gb|AFK77851.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654356|gb|AFK77855.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 349
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 6 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 65
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 66 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 125
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 126 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 184
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 185 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 243
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 244 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 286
>gi|388654290|gb|AFK77823.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 346
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 3 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 62
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 63 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 122
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 123 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 181
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 182 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 240
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 241 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 283
>gi|357216645|gb|AET71056.1| RNA polymerase II second largest subunit, partial [Trametes
cubensis]
Length = 617
Score = 348 bits (893), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 217/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPVNLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL +E +Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLVRGQEDPEFDYKWDNLIKDGVIELLDAEEEETVMICM 290
>gi|388654233|gb|AFK77796.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654241|gb|AFK77800.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654255|gb|AFK77807.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654269|gb|AFK77814.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654276|gb|AFK77817.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654286|gb|AFK77822.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654298|gb|AFK77827.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654302|gb|AFK77829.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654327|gb|AFK77841.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 353
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|388654227|gb|AFK77793.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654229|gb|AFK77794.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654243|gb|AFK77801.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654247|gb|AFK77803.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654265|gb|AFK77812.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 351
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 5 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 64
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 65 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 124
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 125 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 183
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 184 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 242
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 243 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 285
>gi|148750923|gb|ABR10059.1| RNA polymerase II second largest subunit [Termitomyces sp.
IE-BSG-BSIsp.1]
Length = 355
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/282 (59%), Positives = 218/282 (77%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 8 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 67
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 68 SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 127
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 128 ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN L L+K+
Sbjct: 187 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALEKK 245
Query: 593 HI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ N K+ + +Y W+ LV+ GVVE +D EEET MI+M
Sbjct: 246 HVRWLSNGKDDNGADYKWESLVKGGVVELLDAEEEETVMISM 287
>gi|388654284|gb|AFK77821.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654318|gb|AFK77837.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654320|gb|AFK77838.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654341|gb|AFK77848.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 352
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|388654251|gb|AFK77805.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654253|gb|AFK77806.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654274|gb|AFK77816.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654308|gb|AFK77832.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654310|gb|AFK77833.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654339|gb|AFK77847.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654354|gb|AFK77854.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 350
Score = 348 bits (892), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|388654304|gb|AFK77830.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 354
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|388654239|gb|AFK77799.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 349
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 3 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 62
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 63 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 122
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 123 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 181
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 182 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 240
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 241 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 283
>gi|148750921|gb|ABR10058.1| RNA polymerase II second largest subunit [Termitomyces microcarpus]
Length = 357
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 8 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 67
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 68 SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 127
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S TK+FVNG W+G+HR
Sbjct: 128 ACGLVKNLALMSCISVGSYSAPVVEFLEEWGLESLEENAHSTTP-CTKVFVNGVWMGVHR 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN L L+K+
Sbjct: 187 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALEKK 245
Query: 593 HIDNLKERDYNN---YGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ L R +N Y W+ LV+ GVVE +D EEET MI+M
Sbjct: 246 HVRWLSNRKDDNGAEYKWESLVKGGVVELLDAEEEETVMISM 287
>gi|93278289|gb|ABF06600.1| RNA polymerase II second largest subunit, partial [Catathelasma
ventricosum]
Length = 347
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 215/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 12 LLANLFRXLFRKLTKDVYRYXQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 71
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 72 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 131
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S TK+FVNG W+G+HR
Sbjct: 132 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENANSTTP-CTKVFVNGVWMGVHR 190
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 191 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLVLQKK 249
Query: 593 HIDNLKER---DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L D Y W+ LV+ GVVE +D EEET MI+M
Sbjct: 250 HIRWLNSHYNDDGEEYKWESLVKGGVVELLDAEEEETVMISM 291
>gi|300394682|gb|ADK11879.1| DNA-directed RNA polymerase II subunit two, partial [Boletus
edulis]
Length = 673
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 14 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 74 SMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG W+G+HR
Sbjct: 134 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHR 192
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 193 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 251
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI+M
Sbjct: 252 HIKWLNQGYRDGDGEEFKWEQLVKTGIIELLDAEEEETVMISM 294
>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
Length = 1124
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 228/662 (34%), Positives = 355/662 (53%), Gaps = 81/662 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W VI AYF KGLVRQ LDS+++F++ +Q I+++ +I TE+ P +
Sbjct: 11 WRVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEI---------PTEI---PGLKV 58
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+ +I + KP E D + P EARLRNLTY+APL++ + E + + ++
Sbjct: 59 RLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPV-----ENNIEAEPEE 113
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+IG +PIML+S ++ T L E+ E P DPGGYFI+NGSE+V++ QE +A N V
Sbjct: 114 VYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVL 173
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + K S + H+++ S+ + + LK P + +
Sbjct: 174 VDTGKTG---------SNITHTAKIISSTAGYRVPVTIERLKDGTFH----VSFPAVPGK 220
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
IP +I+ RALG + DRDI+ + D PE+ + PSL++A I + AL+FIG+R A
Sbjct: 221 IPFVILMRALGILTDRDIVYAVSLD---PEVQNELFPSLEQASSIANVDDALDFIGSRVA 277
Query: 307 RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRD 366
G +E RI+ A++I+ K LPH+G S KKAY+L Y + +++ LGRRE DD+D
Sbjct: 278 -IGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVIELYLGRREPDDKD 336
Query: 367 HYV---------------RMYAQKFID-----------RGKDFNLELAIKTKIITDGLRY 400
HY R+ + F+ RG+ L+ ++ I+T+ +R+
Sbjct: 337 HYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRH 396
Query: 401 SLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLW 460
+LATGNW R GVSQ+L+R + S LSHLRRV S + R + R LH T W
Sbjct: 397 ALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQW 450
Query: 461 GMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADA-- 518
G +CP ETPEG GLVKNLALMA I+VG + + L E + +EE+
Sbjct: 451 GRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVVPVEEVIRRVTEGGED 510
Query: 519 -------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD--REIRIH 569
+K+ +NG +G ++D +L +R+ RR+ + I EV++ + D E+ ++
Sbjct: 511 QNEYLKWSKVILNGRLIGYYQDGGELANKIRERRRKGE-ISDEVNVGHIVTDFINEVHVN 569
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
D+GR+ RPL+I NG+ L+ I+++++ + + LV+ G +EY+D EEE +
Sbjct: 570 CDSGRVRRPLIIVSNGNPLVT---IEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYV 626
Query: 630 AM 631
A+
Sbjct: 627 AL 628
>gi|148750919|gb|ABR10057.1| RNA polymerase II second largest subunit [Tephrocybe rancida]
Length = 357
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 8 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLALAVKHQTITNGLKYSLATGNWGDQKK 67
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 68 SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 127
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 128 ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 186
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN L L+K+
Sbjct: 187 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLTLEKK 245
Query: 593 HI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI N + D Y W+ LV+ GVVE +D EEET MI+M
Sbjct: 246 HIRWLQNGMDDDQKAYKWESLVKGGVVELLDAEEEETVMISM 287
>gi|224223884|gb|ACN39680.1| RNA polymerase II subunit 2, partial [Scleroderma sp. AWW311]
Length = 362
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLXRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHBT WGM+CPAETPEG
Sbjct: 70 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHBTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ L+++G++E +D EEET MI M
Sbjct: 248 HIKWLSQGYRDDDGEEFKWEQLIKNGIIELLDAEEEETVMICM 290
>gi|388654231|gb|AFK77795.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654280|gb|AFK77819.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 354
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|262302223|gb|ACY43704.1| RNA polymerase subunit 2 [Leiobunum verrucosum]
Length = 181
Score = 348 bits (892), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 161/181 (88%), Positives = 175/181 (96%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTV+++ E+PV TQHQK+FIGKIPIMLRST+CLL+GL+DRDL+E
Sbjct: 1 RLRNLTYSAPLYVDITKTVIKENEDPVETQHQKTFIGKIPIMLRSTFCLLSGLSDRDLSE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK E RSC+EHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKAECRSCMEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ ++KSAIGQRII ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDF+
Sbjct: 121 TLWVNMLARGGQGVRKSAIGQRIIGILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFE 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|388654245|gb|AFK77802.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
gi|388654267|gb|AFK77813.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 352
Score = 348 bits (892), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 6 LLAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 65
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 66 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 125
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 126 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 184
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 185 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 243
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 244 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 286
>gi|300394752|gb|ADK11914.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
lacrymans]
Length = 659
Score = 348 bits (892), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 17 LLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 76
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 77 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 136
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 137 ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 195
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 196 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 254
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D Y W+ LV+SG++E +D EEET MI+M
Sbjct: 255 HIKWLNQGYRDDDGEEYKWEHLVKSGIIELLDAEEEETVMISM 297
>gi|194306413|dbj|BAG55601.1| RNA polymerase II second largest subunit [Lentinus tigrinus]
Length = 287
Score = 348 bits (892), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 167/266 (62%), Positives = 209/266 (78%), Gaps = 5/266 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T
Sbjct: 13 VYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYT 72
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISV
Sbjct: 73 YASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISV 132
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
G+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HRDP L+ TLRKLRR+
Sbjct: 133 GTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHRDPVSLVRTLRKLRRK- 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNY 605
D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+KRHI+NL KE Y
Sbjct: 191 DDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKRHIENLVRGKEDPDFAY 250
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L++ GV+E +D EEET MI M
Sbjct: 251 NWDNLIKEGVIELLDAEEEETVMICM 276
>gi|99866476|gb|ABF67583.1| RNA polymerase II second largest subunit, partial [Tulasnella
violea]
Length = 348
Score = 348 bits (892), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 176/302 (58%), Positives = 223/302 (73%), Gaps = 7/302 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V + QK ++ GKDF L A+K IT GL+YSLATGNWGDQKK
Sbjct: 14 LLAGLFRMLFRKLTKDVFRHLQKCVETGKDFTLSAAVKHMTITQGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR TFAS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 74 AMSSKAGVSQVLNRYTFASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE--IAPSAIADATKIFVNGCWVGI 530
A GLVKNLALM+ ISVGS +PI+EFLEEW +E LEE ++PS ATK+FVNG W+G+
Sbjct: 134 ACGLVKNLALMSCISVGSLSAPIIEFLEEWGLEPLEEHSLSPS---QATKVFVNGVWMGV 190
Query: 531 HRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLK 590
HRD ++L+ TLR+LRR+ D I EVSI+RDIR+RE+R++TDAGR+CRPL I E+ LL+K
Sbjct: 191 HRDAQELVKTLRRLRRK-DDISPEVSIVRDIRERELRLYTDAGRVCRPLFIVEDNQLLIK 249
Query: 591 KRHIDN-LKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEE 649
K+H+ L + YGW L+ GV+E +D EEET MIAM +++ +V+ D +
Sbjct: 250 KKHVRMILASTPEDRYGWTNLLTEGVIELLDAEEEETVMIAMTPDDLEADMVQAKDEYMD 309
Query: 650 ET 651
ET
Sbjct: 310 ET 311
>gi|388654350|gb|AFK77852.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 352
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 7 LLAGLFRMLFKXLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 66
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 67 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 126
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 127 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 185
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 186 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 244
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 245 HIKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 287
>gi|123979364|gb|ABM81507.1| RNA polymerase II second largest subunit [Myelochroa aurulenta]
Length = 704
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 171/298 (57%), Positives = 215/298 (72%), Gaps = 20/298 (6%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R + V Y QK ++ K+FN+ LA+K+ +T+GLRYSLATGNWGDQKK
Sbjct: 10 LLASLFRGTFNKLTKDVYKYLQKCVENNKEFNMTLAVKSTHLTNGLRYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A +AGVSQVLNR TFAS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG
Sbjct: 70 AASVKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM YI+VG+ PI++F+ + +ME LEE P + +ATKIFVNG WVG+HR
Sbjct: 130 ACGLVKNLALMCYITVGTPSEPIVDFMIQRNMEVLEEYEPLSSPNATKIFVNGVWVGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN-------G 585
DP L+GT++ LRR+ +I EVS++RDIRDRE ++ TDAGR+CRPL + +N G
Sbjct: 190 DPAHLVGTVQNLRRR-GMISHEVSLVRDIRDREFKVFTDAGRVCRPLFVIDNNPSSDTRG 248
Query: 586 SLLLKKRHIDNLK------------ERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+L+L K H+ L+ RD + GWQ LV+ GVVEY+D EEET MI M
Sbjct: 249 NLVLTKEHVQKLEIDRENWATTEPDVRDQTDMGWQGLVKEGVVEYVDAEEEETIMIVM 306
>gi|357216655|gb|AET71061.1| RNA polymerase II second largest subunit, partial [Coriolopsis cf.
caperata CR22]
Length = 605
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 167/282 (59%), Positives = 217/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FN+ LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNISLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVG+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP +L+ TLRKLRR+ DI EVS++RDIR+RE+R++TDAGR+CRPL I EN LL++KR
Sbjct: 190 DPVKLVSTLRKLRRKDDINC-EVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKR 248
Query: 593 HIDNL---KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++ L K+ ++Y W L++ GV+E +D EEET MI M
Sbjct: 249 HVEKLLRSKDDQTSDYTWDNLLKDGVIELLDAEEEETVMICM 290
>gi|194306497|dbj|BAG55643.1| RNA polymerase II second largest subunit [Trametes conchifer]
Length = 287
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 165/266 (62%), Positives = 211/266 (79%), Gaps = 5/266 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK ++AGVSQVLNR T
Sbjct: 13 VYRYLQKCVETHKEFNLGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYT 72
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISV
Sbjct: 73 YASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISV 132
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
GS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HRDP L+ T++KLRR+
Sbjct: 133 GSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK- 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNY 605
D I SEVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+HI+NL KE +Y
Sbjct: 191 DDISSEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLVRGKEDPEYDY 250
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L++ GV+E +D EEET +I M
Sbjct: 251 KWDNLIKDGVIELLDAEEEETVIICM 276
>gi|300394706|gb|ADK11891.1| DNA-directed RNA polymerase II subunit two, partial [Gyrodon
lividus]
Length = 690
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 219/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 14 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 74 SMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 134 ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 192
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 193 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 251
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D ++ W+ LV+SG++E +D EEET MI+M
Sbjct: 252 HIKWLNQGYRDDDGEDFKWEHLVKSGIIELLDAEEEETVMISM 294
>gi|262302243|gb|ACY43714.1| RNA polymerase subunit 2 [Polyzonium germanicum]
Length = 181
Score = 347 bits (891), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 164/181 (90%), Positives = 173/181 (95%)
Query: 94 RLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTE 153
RLRNLTYSAPLYVDITKTVV+ G+EPV QHQK FIGKIPIMLRS YCLL+GLTDRDLTE
Sbjct: 1 RLRNLTYSAPLYVDITKTVVKDGDEPVEXQHQKMFIGKIPIMLRSAYCLLSGLTDRDLTE 60
Query: 154 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTS 213
LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS+KDSKYA+K+EIRS LEHSSRPTS
Sbjct: 61 LNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSLKDSKYAFKSEIRSYLEHSSRPTS 120
Query: 214 TLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD 273
TLWVNM+ARGGQ +KKSAIGQRIIAILPYIKQE+PIMIVFR LGFVADRDILEHIIYDFD
Sbjct: 121 TLWVNMLARGGQGVKKSAIGQRIIAILPYIKQEVPIMIVFRGLGFVADRDILEHIIYDFD 180
Query: 274 D 274
D
Sbjct: 181 D 181
>gi|300394734|gb|ADK11905.1| DNA-directed RNA polymerase II subunit two, partial [Porphyrellus
porphyrosporus]
Length = 689
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 14 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 74 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 134 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 192
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 193 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 251
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV++G++E +D EEET MI+M
Sbjct: 252 HIKWLNQGYRDDDGEKFKWEQLVKTGIIELLDAEEEETVMISM 294
>gi|300394760|gb|ADK11918.1| DNA-directed RNA polymerase II subunit two, partial [Tapinella
atrotomentosa]
Length = 653
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 170/284 (59%), Positives = 217/284 (76%), Gaps = 8/284 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 13 LLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 72
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 73 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 132
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 133 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 191
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN L LKK+
Sbjct: 192 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALKKK 250
Query: 593 HIDNLKERDYNN-----YGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ L R Y N Y W+ LV+ G++E +D EEET MI+M
Sbjct: 251 HVKWL-SRGYRNDETEEYKWEHLVKGGIIELLDAEEEETVMISM 293
>gi|300394754|gb|ADK11915.1| DNA-directed RNA polymerase II subunit two, partial [Suillus
bresadolae]
Length = 694
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 14 LLAGLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 74 AMSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 134 ACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 192
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 193 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 251
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ L +E D + W+ LV++G++E +D EEET MI M
Sbjct: 252 HVKWLNQGYREDDGEEFKWEQLVKNGIIELLDAEEEETVMICM 294
>gi|224223838|gb|ACN39657.1| RNA polymerase II subunit 2, partial [Gyroporus cyanescens]
Length = 362
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 169/283 (59%), Positives = 217/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 10 LLANLFRMLFKKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 69
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 70 SMAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 129
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 130 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 188
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L+L+K+
Sbjct: 189 DPANLVKTIKKLRR-XDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKK 247
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV+ G++E +D EEET MI+M
Sbjct: 248 HIKWLSQGYRDDDGEEFKWEQLVKGGIIELLDAEEEETVMISM 290
>gi|194306501|dbj|BAG55645.1| RNA polymerase II second largest subunit [Trametes hirsuta]
Length = 287
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 165/266 (62%), Positives = 209/266 (78%), Gaps = 5/266 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK ++AGVSQVLNR T
Sbjct: 13 VYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYT 72
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISV
Sbjct: 73 YASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISV 132
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
GS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HRDP L+ T++KLRR+
Sbjct: 133 GSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRDPANLVKTIKKLRRK- 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNY 605
D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+HI+NL KE Y
Sbjct: 191 DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLVRGKEDPEFEY 250
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L++ GV+E +D EEET MI M
Sbjct: 251 KWDNLIKDGVIELLDAEEEETVMICM 276
>gi|94421356|gb|ABF18846.1| RNA polymerase II second largest subunit, partial [Rhodocybe
mundula]
Length = 423
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 170/282 (60%), Positives = 216/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 12 LLANLFRMLFXKLTKDVYRYLQKCVEXHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 71
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AG SQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 72 SMSSKAGXSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 131
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 132 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 190
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ TL+KLRR+ D I EVSI+RDIR++E+R++TDAGR+CRPL I EN L+LKK+
Sbjct: 191 DPANLVKTLKKLRRK-DDISPEVSIVRDIREKELRLYTDAGRVCRPLFIVENQELILKKK 249
Query: 593 HI---DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H+ +N + Y W+ LV+ GVVE +D EEET MI+M
Sbjct: 250 HVRWLNNGVDDSGEEYKWEHLVKGGVVELLDAEEEETVMISM 291
>gi|86559339|gb|ABD04077.1| RNA polymerase II second largest subunit, partial [Auricularia sp.
PBM2295]
Length = 341
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 168/282 (59%), Positives = 217/282 (76%), Gaps = 5/282 (1%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLASL R V Y QK ++ KDFNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 2 LLASLFRMLFRKLTKDVYRYLQKCVEARKDFNLNLAVKANTITNGLKYSLATGNWGDQKK 61
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ A+AGVSQVLNR TFAS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 62 SMSAKAGVSQVLNRYTFASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 121
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S I +TK+FVNG W+G+HR
Sbjct: 122 ACGLVKNLALMACISVGSLSAPVIEFLEEWGLESLEENAHSGIP-STKVFVNGVWMGVHR 180
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I E+ L++KK
Sbjct: 181 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVEDQQLVIKKH 239
Query: 593 HID---NLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++ N ++ ++ W L+++G++E +D EEET MI M
Sbjct: 240 HVEWIQNKEDEHGASFKWDNLIKTGLIELLDAEEEETVMICM 281
>gi|194306417|dbj|BAG55603.1| RNA polymerase II second largest subunit [Lignosus rhinocerotis]
Length = 287
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/266 (62%), Positives = 209/266 (78%), Gaps = 5/266 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK+ ++AGVSQVLNR T
Sbjct: 13 VYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYT 72
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISV
Sbjct: 73 YASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISV 132
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
G+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HRDP L+ TLRKLRR+
Sbjct: 133 GTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHRDPVSLVKTLRKLRRK- 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNY 605
D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LL++KRHI+NL KE Y
Sbjct: 191 DDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLVQKRHIENLVRGKEEPDFPY 250
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L++ GV+E +D EEET MI M
Sbjct: 251 NWDNLIKEGVIELLDAEEEETVMICM 276
>gi|300394726|gb|ADK11901.1| DNA-directed RNA polymerase II subunit two, partial [Pseudomerulius
curtisii]
Length = 652
Score = 347 bits (891), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/283 (59%), Positives = 216/283 (76%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 14 LLANLFRMLFRKLTRDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 73
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 74 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 133
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A SA TK+FVNG W+G+HR
Sbjct: 134 ACGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSATP-CTKVFVNGVWMGVHR 192
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR++E+R++TDAGR+CRPL I EN L L+K+
Sbjct: 193 DPANLVKTIKKLRRK-DDISPEVSVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKK 251
Query: 593 HI----DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI ++ D + W+ LV+ G+VE +D EEET MI+M
Sbjct: 252 HIKWLSQGFRDEDGEEFKWEHLVKGGIVELLDAEEEETVMISM 294
>gi|357216643|gb|AET71055.1| RNA polymerase II second largest subunit, partial [Trametes maxima]
Length = 676
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/287 (59%), Positives = 216/287 (75%), Gaps = 10/287 (3%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK
Sbjct: 11 LLANLFRMLFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKK 70
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 71 SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 130
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 131 ACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 189
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LLL+K+
Sbjct: 190 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKK 248
Query: 593 HIDNL--------KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI+NL KE Y W L++ GV+E +D EEET MI M
Sbjct: 249 HIENLVRGKEEAGKEDPAVIYKWDNLIKDGVIELLDAEEEETVMICM 295
>gi|388654294|gb|AFK77825.1| DNA-directed RNA polymerase II subunit two, partial [Rhizopogon
salebrosus]
Length = 343
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 168/282 (59%), Positives = 215/282 (76%), Gaps = 6/282 (2%)
Query: 354 LASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKA 413
LA L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKKA
Sbjct: 1 LAGLFRMLFKKLTRDVYRYLQKCVESHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKA 60
Query: 414 HQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 473
++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A
Sbjct: 61 MSSKAGVSQVLNRYTYASTLSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQA 120
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 533
GLVKNLALMA ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HRD
Sbjct: 121 CGLVKNLALMACISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHRD 179
Query: 534 PEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRH 593
P L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+H
Sbjct: 180 PANLVKTIKKLRRK-DDIXPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKH 238
Query: 594 IDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I L ++ D + W+ LV++G++E +D EEET MI M
Sbjct: 239 IKWLNQGYRDEDGEEFKWEQLVKNGIIELLDAEEEETVMICM 280
>gi|194306483|dbj|BAG55636.1| RNA polymerase II second largest subunit [Polyporus udus]
Length = 287
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/266 (62%), Positives = 209/266 (78%), Gaps = 5/266 (1%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
V Y QK ++ K+FNL LA+K IT+GL+YSLATGNWGDQKK+ A+AGVSQVLNR T
Sbjct: 13 VYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYT 72
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+ ISV
Sbjct: 73 YASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISV 132
Query: 489 GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQM 548
G+ +P++EFLEEW +E+LEE A A TK+FVNG W+G+HRDP L+ TLRKLRR+
Sbjct: 133 GTLSAPVIEFLEEWGLESLEENA-HASTPCTKVFVNGVWMGVHRDPVSLVRTLRKLRRK- 190
Query: 549 DIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNL---KERDYNNY 605
D I EVS++RDIR+RE+R++TDAGR+CRPL I EN LL++K+HI+NL KE Y
Sbjct: 191 DDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLVQKKHIENLVRGKEDPTLAY 250
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAM 631
W L++ GV+E +D EEET MI M
Sbjct: 251 NWDNLIKEGVIELLDAEEEETVMICM 276
>gi|86559341|gb|ABD04078.1| RNA polymerase II second largest subunit, partial [Aureoboletus
thibetanus]
Length = 692
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 218/283 (77%), Gaps = 6/283 (2%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R V Y QK ++ K+FNL LA+K + IT+GL+YSLATGNWGDQKK
Sbjct: 6 LLANLFRMAFKKLTKDVYRYLQKCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKK 65
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
+ ++AGVSQVLNR T+AS+LSHLRR N+P+GR+GK+AKPRQLHNT WGM+CPAETPEG
Sbjct: 66 SMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQ 125
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLV+NLALM+ ISVGS +P++EFLEEW +E+LEE A S+ TK+FVNG W+G+HR
Sbjct: 126 ACGLVRNLALMSGISVGSYSAPVIEFLEEWGLESLEENAHSSTP-CTKVFVNGVWMGVHR 184
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKR 592
DP L+ T++KLRR+ D I EVS++RDIR+RE+R++TDAGR+CRPL I EN L L+K+
Sbjct: 185 DPANLVKTIKKLRRK-DDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKK 243
Query: 593 HIDNL----KERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
HI L ++ D + W+ LV+SG++E +D EEET MI+M
Sbjct: 244 HIKWLNQGYRDDDGEEFKWEQLVKSGIIELLDAEEEETVMISM 286
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,098,050,968
Number of Sequences: 23463169
Number of extensions: 422333307
Number of successful extensions: 1014122
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13166
Number of HSP's successfully gapped in prelim test: 3576
Number of HSP's that attempted gapping in prelim test: 956556
Number of HSP's gapped (non-prelim): 35306
length of query: 661
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 512
effective length of database: 8,863,183,186
effective search space: 4537949791232
effective search space used: 4537949791232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)