BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7582
(661 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/657 (90%), Positives = 611/657 (92%), Gaps = 26/657 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VRMY QKFIDRGKDFNLELAIKT II
Sbjct: 382 ELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNII 441
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQ
Sbjct: 442 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQ 501
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA
Sbjct: 502 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 561
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIHRDPEQLM TLRKLRRQMDIIVSEVS+IRDIRDREIRI+TDAGR
Sbjct: 562 IADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGR 621
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
ICRPLLI ENGSLLLKK H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 622 ICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens
GN=POLR2B PE=1 SV=1
Length = 1174
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus
GN=Polr2b PE=2 SV=2
Length = 1174
Score = 1192 bits (3083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/672 (84%), Positives = 611/672 (90%), Gaps = 26/672 (3%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKII 394
ELDDRDHY VR+YAQKFIDRGKDFNLELAIKT+II
Sbjct: 381 ELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440
Query: 395 TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQ 454
+DGL+YSLATGNWGDQKKAHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQ
Sbjct: 441 SDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQ 500
Query: 455 LHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSA 514
LHNTLWGM+CPAETPEG AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+A
Sbjct: 501 LHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAA 560
Query: 515 IADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGR 574
IADATKIFVNGCWVGIH+DPEQLM TLRKLRRQMDIIVSEVS+IRDIR+REIRI+TDAGR
Sbjct: 561 IADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGR 620
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQV 634
ICRPLLI E LLLKKRHID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM
Sbjct: 621 ICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD 680
Query: 635 LVQSGVVEYIDT 646
+Q V Y T
Sbjct: 681 DLQEKEVAYCST 692
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis
elegans GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/673 (75%), Positives = 575/673 (85%), Gaps = 31/673 (4%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEF+QM+VQRIVEDSP ++LQ+E QH T++E P
Sbjct: 29 WQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENP 88
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF QIYLSKPTHWEKDG+P PMMPNEARLRNLTY++PLYVDITK V R +
Sbjct: 89 AKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRD-DSATE 147
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
+ K F+GK+P+MLRS+YC+L+ +TDRDLTELNECPLDPGGYF+INGSEKVLIAQEKMA
Sbjct: 148 KVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMA 207
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVFSMKD KYA+KTE RSCLE+SSRPTST+WVNM+ARGG KK+A+GQRII ILP
Sbjct: 208 TNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILP 267
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQEIPIMIVFRALGFV+DRDIL HIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 268 YIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNFI 327
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
GARGA+PGVT+E+RIKYAREILQKE+LPHVGVS+ CETKKA+F+GYMVHRLLLA+LGRRE
Sbjct: 328 GARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRE 387
Query: 362 LDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAIKTKIIT 395
LDDRDH +RM AQK+I++ DF L++ +KT IT
Sbjct: 388 LDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTIT 447
Query: 396 DGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQL 455
GL YSLATGNWGDQKKAHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+GKLAKPRQL
Sbjct: 448 RGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQL 507
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI 515
HNT WGM+CPAETPEG AVGLVKNLALMAYISVGS P PILEFLEEWSMENLEE++PSAI
Sbjct: 508 HNTQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAI 567
Query: 516 ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRI 575
ADATKIFVNG WVGIHR+P+QLM TL+KLRRQMDIIVSEVS++RDIRDREIRI+TDAGR+
Sbjct: 568 ADATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRV 627
Query: 576 CRPLLIAENGSLLLKKRHIDNLKER--DYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
CRPLLI EN L LKKRHID LKE + N Y W LV GVVE ID++EEET+MIAM
Sbjct: 628 CRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMP 687
Query: 634 VLVQSGVVEYIDT 646
++SG Y DT
Sbjct: 688 EDLRSG--GYCDT 698
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/667 (61%), Positives = 496/667 (74%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 21 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 80
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 81 FAETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 138
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEK
Sbjct: 139 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEK 198
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYAY E+RS E+ +RP ST++V M+AR S K +
Sbjct: 199 VLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARA--SAKGGS 256
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVI
Sbjct: 257 SGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVI 316
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVTKE+RIKYAR+ILQKEMLPHVG+ + CETKKAY+ GY++HR
Sbjct: 317 QNQLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHR 376
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GK+ NL
Sbjct: 377 LLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNL 436
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 437 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 495
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 496 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 555
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+PS I ATKIFVNG WVG+HRDP+ L+ TLR+LRR++D + +EV ++RDIR +E
Sbjct: 556 NFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRLRRRVD-VNTEVGVVRDIRLKE 614
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I +N LL+KKR I L++R+ GW LV G +EYIDT EE
Sbjct: 615 LRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEEDGWHHLVAKGFIEYIDTEEE 674
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 675 ETTMISM 681
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/667 (60%), Positives = 492/667 (73%), Gaps = 42/667 (6%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----ST 56
+ QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 20 ITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSD 79
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 80 FAETI--YKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKG 137
Query: 117 ---EEPVTTQ-HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECPLD GGYFIINGSEK
Sbjct: 138 HDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 197
Query: 173 VLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231
VLIAQEKM+TN VYVF + +KYA+ E+RS + +RP ST++V M++R S K +
Sbjct: 198 VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSR--TSAKGGS 255
Query: 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVI 291
GQ I A LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF+D +MME+++PSL+EAFVI
Sbjct: 256 SGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVI 315
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
Q Q VAL++IG RGA GVT+E+RIKYA+EILQKEMLPHVGV ++CETKKAY+ GY++HR
Sbjct: 316 QNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHR 375
Query: 352 LLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNL 385
LLL +LGRR DDRDHY VR Y QK +D GKD NL
Sbjct: 376 LLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNL 435
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+ AIK K IT GL+YSLATGNWG Q A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR
Sbjct: 436 QFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGR 494
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
+GKLAKPRQLHN+ WGM+CPAETPEG A GLVKNLALM YI+VGS PILEFLEEW E
Sbjct: 495 EGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTE 554
Query: 506 NLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDRE 565
N EEI+P+ I ATKIFVNG WVGIHRDP+ ++ + R+ + +EV ++RDIR +E
Sbjct: 555 NFEEISPAVIPQATKIFVNGTWVGIHRDPD-MLVRTLRRLRRRVDVNTEVGVVRDIRLKE 613
Query: 566 IRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEE 624
+RI+TD GR RPL I E L++KK+ I L++R+ + GW LV G +EYIDT EE
Sbjct: 614 LRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEE 673
Query: 625 ETTMIAM 631
ETTMI+M
Sbjct: 674 ETTMISM 680
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/685 (55%), Positives = 483/685 (70%), Gaps = 61/685 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L QE CW VI+++F+E L RQQL SFDEF+Q ++Q IV+D + L AQHT + +
Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDV 71
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
RY + F QIYLS+PT E DGS + M P EARLRNLTYS+PLYVD+ K V+ + V
Sbjct: 72 TRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNV 131
Query: 121 ------------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
+ K FIGKIPIMLRST+C+LNG++D +L +LNECP D GGYFIIN
Sbjct: 132 PIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 169 GSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKV+IAQE+ A N V VF S AY EIRS LE SR S++ + +MAR ++
Sbjct: 192 GSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTEN- 250
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
GQ I A LPYI+ +IPI+IVFRALG V DRDILEHI YD +D +M+EM+KP ++E
Sbjct: 251 ----SGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEE 306
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ++++AL++IG RG+ GVT+E+R++YA +ILQKE+LPH+ + ET+KA+FLGY
Sbjct: 307 AFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGY 366
Query: 348 MVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGK 381
M+HR+LL +L RRE DDRDH+ V Y QK ++ +
Sbjct: 367 MIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNR 426
Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
+FNL LA+K+ IIT+GLRYSLATGNWGDQK++ R GVSQVLNR TFAS+LSHLRR N+
Sbjct: 427 EFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486
Query: 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEE 501
PIGRDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+Y+SVGS +PI+EFLEE
Sbjct: 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEE 546
Query: 502 WSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
W +E LE+ PSA +ATK+FVNG W+G+HRDP L TLR LRR++D I +EVSI+RDI
Sbjct: 547 WGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLD-ISAEVSIVRDI 605
Query: 562 RDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNNY--------G 606
R++E+R+ TDAGRICRPL I +N G L ++K HI L E D + Y G
Sbjct: 606 REKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIE-DKDRYDIDPEQRFG 664
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAM 631
W LV SG++EY+D EEET MIAM
Sbjct: 665 WTALVSSGLIEYLDAEEEETVMIAM 689
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/670 (58%), Positives = 491/670 (73%), Gaps = 54/670 (8%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH------T 54
+ QE W VI+AYF EKGLVRQQLDSFDEFIQ ++Q I+++SP I L+ E+QH
Sbjct: 18 ISQEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVV 77
Query: 55 STEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV- 113
S V T + +KF QIYLSKPT E DG + PN+AR+RNLTYSAPL+VDITKTV+
Sbjct: 78 SNNVST---FSVKFGQIYLSKPT-AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMT 133
Query: 114 ---RQGEEPVTTQHQKS-FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
+G+E T + K FIGK+PIMLRS YC+LN DRDLT + EC D GGYFIING
Sbjct: 134 GSKSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIING 193
Query: 170 SEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQEKM N VYVF SKY+Y EIRSC E SRPTST+++ M+ +
Sbjct: 194 SEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKML----HNTN 249
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K +G I A +PYIKQ++P++IVFRALGFVAD+DILEHI YDF D +MM++++PSL+E+
Sbjct: 250 KGPVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEES 307
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ Q VAL+++G RG+ G T+E+RIK+ARE+LQKEMLPHV V++F ETKKA++ GY+
Sbjct: 308 FVIQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYI 366
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
HRLLLASL RR LDDRDH+ VR+Y Q+ ID+ K+
Sbjct: 367 THRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKE 426
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
F A+K+K IT GL+YSLATGNWG K ++GV+QVLNRLTFAS+LSHLRR+N+P
Sbjct: 427 FIASSAVKSKTITSGLKYSLATGNWGSSKSG-GTKSGVAQVLNRLTFASTLSHLRRLNTP 485
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGR+GKLAKPRQLHNT WG++CP+ETPEG A GLVKNLA+M+YISVGS PILEFLEEW
Sbjct: 486 IGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEW 545
Query: 503 SMENLEEIAP-SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDI 561
+ ENLEEI+ S+I ATKIFVNG WVGIH P++L+ TLR LRR D+ V EVS++RDI
Sbjct: 546 TTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSV-EVSVVRDI 604
Query: 562 RDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
R++E+R++TD GR CRPL + ++ + +KK+HI+ L D Y WQ L+ G+VEYID
Sbjct: 605 REKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINND--EYKWQDLLSEGIVEYIDA 662
Query: 622 LEEETTMIAM 631
EEET +IAM
Sbjct: 663 EEEETVLIAM 672
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/693 (53%), Positives = 469/693 (67%), Gaps = 75/693 (10%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E CW VI+++F EKGLV QQLDSFDEFI+ ++Q +V + ++ L AQHTS E R
Sbjct: 21 EDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRR 80
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR--------- 114
Y + F +IY+SKPT E DG+ PM P EARLRNLTYS+PLYVD+TK V++
Sbjct: 81 YEITFGKIYISKPTQTEGDGTTHPMFPQEARLRNLTYSSPLYVDMTKRVLKSDDNAGNEH 140
Query: 115 ---------QGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ EEP T K ++GK+PIMLRS +C+L L + + EL ECP D GGYF
Sbjct: 141 ELEWIEEEIKDEEPST----KVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYF 196
Query: 166 IINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG 224
+INGSEKVLIAQE+ A N V VF S ++ EIRS LE SR S++ + + R
Sbjct: 197 VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGRE- 255
Query: 225 QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+KS + I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP
Sbjct: 256 ---EKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPC 312
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
++E FVIQE+ VAL+FIG RGA G+ +E+RI+YA++ILQKE+LP++ + ET+KA+F
Sbjct: 313 VEEGFVIQEREVALDFIGRRGAL-GIKREKRIQYAKDILQKELLPNITQDEGFETRKAFF 371
Query: 345 LGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFID 378
LGYMV+RLLL +L R+E DDRDH+ + Y Q+ ++
Sbjct: 372 LGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVE 431
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
K FNL LA+K++ ITDGLRYSLATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR
Sbjct: 432 NDKVFNLTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 491
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
N+PIGRDGK+AKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ PIL F
Sbjct: 492 TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYF 551
Query: 499 LEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSII 558
LEEW ME LE+ PS D+T++FVNG WVG HR+P L+ T+R LRR+ D I EVSII
Sbjct: 552 LEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGD-ISPEVSII 610
Query: 559 RDIRDREIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYNN------- 604
RDIR++E +I TDAGR+ RPL I ++ G L L+K HI L +Y+
Sbjct: 611 RDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYATNEF 670
Query: 605 ------YGWQVLVQSGVVEYIDTLEEETTMIAM 631
YGW LV GVVEY+D EEET MIAM
Sbjct: 671 GEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAM 703
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/704 (50%), Positives = 463/704 (65%), Gaps = 65/704 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++FI ++Q ++ + + L+ AQHT+ +
Sbjct: 24 EDSWTVISAFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNISRK 83
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQ-------- 115
Y + F +IYL+KP+ E DG M P EARLRNLTY++ L+V+I K
Sbjct: 84 YEISFGKIYLAKPSMTESDGVSHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDL 143
Query: 116 -----GEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGS 170
EE T+ K FIG++PIMLRS YCLL+ L++ DL L ECP D GGYFIINGS
Sbjct: 144 KYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIINGS 203
Query: 171 EKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKK 229
EKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G +
Sbjct: 204 EKVLIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGST--- 260
Query: 230 SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAF 289
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP ++E F
Sbjct: 261 ---SRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGF 317
Query: 290 VIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
VIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM+
Sbjct: 318 VIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 377
Query: 350 HRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDF 383
+RLLL +L R++ DDRDH+ + + Q+ ++ KDF
Sbjct: 378 NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDF 437
Query: 384 NLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPI 443
NL+LA+K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+PI
Sbjct: 438 NLKLAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPI 497
Query: 444 GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS 503
GRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 498 GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWG 557
Query: 504 MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
ME LE+ P DAT++FVNG W GIHR+P +L+ T+RKLRR+ D I +EVSI+RDIR+
Sbjct: 558 MEPLEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGD-ITAEVSIVRDIRE 616
Query: 564 REIRIHTDAGRICRPLLIAEN-------GSLLLKKRHIDNLKERDYN-----------NY 605
+E++I TDAGR+ RPL + + L ++K HI L +Y NY
Sbjct: 617 KELKIFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDINY 676
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEE 649
W L+ G+VEYID EEET +IAM Q + V + +D +E
Sbjct: 677 TWTSLLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDE 720
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/659 (50%), Positives = 461/659 (69%), Gaps = 50/659 (7%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+E W +I+++F++KGLVRQQLDSFD+F++ +Q ++ +SP I +Q+ + +ET
Sbjct: 7 KEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSAP---TAGIETQK 63
Query: 63 RYLLKFEQIYLSKP-THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
R ++F QIY+SKP + E DG + PNEAR+R+LTY++PL++D+TK + E V
Sbjct: 64 RIAVRFGQIYVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETL--SELGVV 121
Query: 122 TQHQKSFI--GKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+H+ S + G +P+MLRS+YC+L GL D+DL +L ECP D GGYFI+NGSEKV++AQE+
Sbjct: 122 DKHKYSRVPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVIVAQER 181
Query: 180 MATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
MA+NTVYVF + + Y + EIRS E SSR STL + + G I
Sbjct: 182 MASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRSPGV----------IRV 231
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
LP +KQ++P+ +++RALGF++D++I++HI+Y+ DD EM E++K S++E V+Q+QNVAL
Sbjct: 232 SLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQNVAL 290
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
++IG R A G +E+RI A+++L KE+LPH+G +FCETKKAYF+GY+V RLLL +LG
Sbjct: 291 DYIGKRSAPIGTPQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALG 350
Query: 359 RRELDDRDHYVRM--------------------------YAQKFIDRGKDFNLELAIKTK 392
RR DDRDHY + + QK I+ G++FN+ L +K
Sbjct: 351 RRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGREFNIALGLKAS 410
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G RY+LATGNWGDQ KA Q RAGV+QVLNR F S+LSHLRRVN+PI ++GKLA P
Sbjct: 411 IITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAP 470
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
RQLHNT WGM+CPAETPEG A GLVKNL+LMAYISVGS P++EFLEE +E+LEEI+
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEIST 530
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDA 572
S + ATKIFVNG WVGIH DP L+ +L+ LRR +++ EVSI+RDIR++EIR+ +DA
Sbjct: 531 SQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMD-KEVSIVRDIREKEIRVQSDA 589
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR CRPLL+ ++ L++ I LK + W LV SG +E++D EEE +MIAM
Sbjct: 590 GRPCRPLLVVKDNKLVITAEDIRKLKRGEIK---WDNLVTSGFIEFLDVEEEEMSMIAM 645
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/696 (49%), Positives = 457/696 (65%), Gaps = 64/696 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ + +
Sbjct: 26 EDTWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQDNISRK 85
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP---- 119
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+TK + P
Sbjct: 86 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVTKRTYEAVDVPGRDL 145
Query: 120 ----------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 146 NYQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIING 205
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R
Sbjct: 206 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGR------ 259
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
+S+ + I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 260 ESSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 319
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 320 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 379
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 380 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAND 439
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 440 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 499
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 500 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEW 559
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ D I EVS+IRDIR
Sbjct: 560 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGD-INPEVSMIRDIR 618
Query: 563 DREIRIHTDAGRICRPLLIAENG------SLLLKKRHIDNLKERDYN----------NYG 606
++E++I TDAGR+ RPL I E+ L ++K H+ L +Y +Y
Sbjct: 619 EQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYT 678
Query: 607 WQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVE 642
W L+ G+VEYID EEE+ +IAM ++ VE
Sbjct: 679 WSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVE 714
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1
SV=2
Length = 1224
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/702 (49%), Positives = 458/702 (65%), Gaps = 69/702 (9%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ + + L+ AQHT+ +
Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRK 87
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV--- 120
Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 88 YEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGREL 147
Query: 121 -----------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
++ K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIING
Sbjct: 148 KYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIING 207
Query: 170 SEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S +
Sbjct: 208 SEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR 267
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 268 T------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG 321
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGYM
Sbjct: 322 FVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYM 381
Query: 349 VHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDRGKD 382
++RLLL +L R++ DDRDH+ + Y Q+ ++ D
Sbjct: 382 INRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHD 441
Query: 383 FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
FN++LAI K IT GL+Y+LATGNWG+QKKA +RAGVSQVLNR T++S+LSHLRR N+P
Sbjct: 442 FNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 501
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
IGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL EW
Sbjct: 502 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEW 561
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME LE+ P DAT++FVNG W G+HR+P +LM TLR LRR+ DI EVS+IRDIR
Sbjct: 562 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDI-NPEVSMIRDIR 620
Query: 563 DREIRIHTDAGRICRPLLIAENGSLL------LKKRHIDNLKERDYNNYGWQVLVQSGVV 616
++E++I TDAGR+ RPL I E+ L ++K HI L +Y + ++ G
Sbjct: 621 EKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQD------IEGG-- 672
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ +EE T W L+ G+VEYID EEE+ +IAM P
Sbjct: 673 --FEDVEEYT-----WSSLLNEGLVEYIDAEEEESILIAMQP 707
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 229/673 (34%), Positives = 360/673 (53%), Gaps = 106/673 (15%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED----SPQIDLQAEAQHTSTEVETPP 62
W+V+ AY+ EKGLVRQ LDS++ FI +Q ++++ P I P
Sbjct: 17 WLVMEAYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFGGVKPDI----------------P 60
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
+ +KF ++ L +P E G P+ P +AR+RNLTYSAP+Y+++ V +E V
Sbjct: 61 DFEVKFGKVRLGEPEFQEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEAVEV 120
Query: 123 QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 182
+ IG++PIML+S C L GL+D +L +L E P DPGGYFI+NGSE+V+++ E +A
Sbjct: 121 R-----IGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAP 175
Query: 183 NTVYVFSMKDSK--------YAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQ 234
N V +D + ++Y+ R+ + R L+V
Sbjct: 176 NKTLV--ERDERQNRIIAKCFSYRHGYRALITVERRKDGILYVK---------------- 217
Query: 235 RIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
LP + + + + V RALG ++DR+I+E + DDP + ++ +L++A + Q
Sbjct: 218 -----LPNVPRPVKFVYVMRALGLLSDREIVEAV---SDDPRIQHVLFDNLEDASDVTTQ 269
Query: 295 NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
AL++IG + + PG KE R++ A+ I+ +LPH+GV + KAY+LG M R+L
Sbjct: 270 EEALDYIG-KLSLPGQPKEYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLE 328
Query: 355 ASLGRRELDDRDHY----VRMYAQKFID-----------------------RGKDFNLE- 386
SLG R DD+DHY +++ +D +G+ + E
Sbjct: 329 LSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFEN 388
Query: 387 ------LAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVN 440
+I+ ++++ + ++LATG+W R GVSQ+L+R + S+LSHLRRV
Sbjct: 389 IQRFVRNSIRPDVLSERIEHALATGSW------PGGRTGVSQLLDRTNYISTLSHLRRVT 442
Query: 441 SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLE 500
SP+ R+ + R LH T WG ICP ETPEG GLVKNLALM+ I+ G + E+LE
Sbjct: 443 SPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGVPEEEVREYLE 502
Query: 501 EWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDII-VSEVSIIR 559
+ +EE P+ D ++++NG VG D E + +R RR I + V++ +
Sbjct: 503 RLGVVPIEERRPN--PDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQ 560
Query: 560 DIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYI 619
D +EI +++D GR+ RPL+I ENG L + H++ +K + W LV+ GV+EY+
Sbjct: 561 DEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKN---GSLTWSDLVKMGVIEYL 617
Query: 620 DTLEEETTMIAMW 632
D EEE ++A W
Sbjct: 618 DAEEEENALVATW 630
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 349 bits (896), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 242/670 (36%), Positives = 353/670 (52%), Gaps = 84/670 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L E+ W + ++F +GLVRQ LDSF++F++ +Q+++ + +I TEV
Sbjct: 2 LDTESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEI---------VTEV-- 50
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSP-SPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP 119
P +K +I KP+ E D P + P EARLRNLTYS+P+++ + EP
Sbjct: 51 -PGLKIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSMIPVENNIEGEP 109
Query: 120 VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
+ +IG +PIML+S + L L E+ E P DPGGYFI+NGSEKV+IAQE
Sbjct: 110 IEI-----YIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKVIIAQED 164
Query: 180 MATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239
+ATN V V K S + H ++ TS+ + + LK S I Q A
Sbjct: 165 LATNRVLVDYGKSG---------SNITHVAKVTSSAAGYRVQVMIERLKDSTI-QISFAT 214
Query: 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALN 299
+P IP I+ RALGFV DRDI+ + D P++ + PSL++A I AL+
Sbjct: 215 VP---GRIPFAIIMRALGFVTDRDIVYAVSLD---PQIQNELLPSLEQASSITSAEEALD 268
Query: 300 FIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGR 359
FIG R A G +E RI+ A +++ K LPH+G S KK Y+L V+++L LGR
Sbjct: 269 FIGNRVA-IGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGR 327
Query: 360 RELDDRDHY----VRMYAQKFID----------------------RGKDFNLELAIKTKI 393
RE DD+DHY VR+ F RG+ +L ++ I
Sbjct: 328 REPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSKVRGRRLSLTALVRADI 387
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT+ +R++LATGNW R GVSQ+L+R + S LSHLRRV S + R + R
Sbjct: 388 ITERIRHALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEAR 441
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
LH T WG +CP ETPEG GLVKNLAL+A +SVG S + E + ++E++
Sbjct: 442 DLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVERVAYELGVVSVEDVI-R 500
Query: 514 AIADA----------TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
I++ +K+++NG +G + D ++L +R+ RRQ + EV++ D
Sbjct: 501 RISEQNEDVEKYMSWSKVYLNGRLLGYYEDGKELAKKIRESRRQGK-LSDEVNVAYIATD 559
Query: 564 --REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDT 621
E+ I+ DAGR+ RPL+I NG+ L+ I LK + + LV+ G +E+ID
Sbjct: 560 YLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEIT---FDDLVKQGKIEFIDA 616
Query: 622 LEEETTMIAM 631
EEE +A+
Sbjct: 617 EEEENAYVAL 626
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 330 bits (846), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 221/692 (31%), Positives = 367/692 (53%), Gaps = 91/692 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCL-EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPY 242
+ V + D K A + S E SR NM + G+ +
Sbjct: 188 RIIVEA--DRKGAVGASVTSSTHEKKSR------TNMAVKQGRFYLRHNT---------- 229
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ--EQNVALNF 300
+ ++IPI+I+F+A+G +D++I++ I + +M PSL+E Q Q AL +
Sbjct: 230 LSEDIPIVIIFKAMGVESDQEIVQMI---GTEEHVMAAFGPSLEECQKAQIFTQMQALKY 286
Query: 301 IGARGARP----GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
IG + R G K+ +I+ ARE+L +L HV V +F K + MV R++LA
Sbjct: 287 IGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ 346
Query: 357 LGRRELDDRDHYV--------RMYAQKFIDRGKDFNLELA-------------------- 388
G ++DDRD+Y ++ + F D K FN E+
Sbjct: 347 -GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKH 405
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
++ IT+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K
Sbjct: 406 MRQDQITNGMVNAISTGNW-SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRK 464
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++
Sbjct: 465 VSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVN 524
Query: 509 EIAPSAIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
+ ++ + +F+NG +G+ RD ++L+ T R +RR I VSI ++ DR +
Sbjct: 525 LLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCV 583
Query: 567 RIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEET 626
I +D GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE
Sbjct: 584 YISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEEND 640
Query: 627 TMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
IA+++ T+ ++TT + + P
Sbjct: 641 CNIALYE-----------HTINKDTTHLEIEP 661
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 330 bits (845), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 221/692 (31%), Positives = 367/692 (53%), Gaps = 91/692 (13%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCL-EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPY 242
+ V + D K A + S E SR NM + G+ +
Sbjct: 188 RIIVEA--DRKGAVGASVTSSTHEKKSR------TNMAVKQGRFYLRHNT---------- 229
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ--EQNVALNF 300
+ ++IPI+I+F+A+G +D++I++ I + +M PSL+E Q Q AL +
Sbjct: 230 LSEDIPIVIIFKAMGVESDQEIVQMI---GTEEHVMAAFGPSLEECQKAQIFTQMQALKY 286
Query: 301 IGARGARP----GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
IG + R G K+ +I+ ARE+L +L HV V +F K + MV R++LA
Sbjct: 287 IGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ 346
Query: 357 LGRRELDDRDHYV--------RMYAQKFIDRGKDFNLELA-------------------- 388
G ++DDRD+Y ++ + F D K FN E+
Sbjct: 347 -GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKH 405
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
++ IT+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K
Sbjct: 406 MRQDQITNGMVNAISTGNW-SLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRK 464
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++
Sbjct: 465 VSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVN 524
Query: 509 EIAPSAIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREI 566
+ ++ + +F+NG +G+ RD ++L+ T R +RR I VSI ++ DR +
Sbjct: 525 LLCGEELSYPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRA-GYINEFVSISTNLTDRCV 583
Query: 567 RIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEET 626
I +D GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE
Sbjct: 584 YISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEEND 640
Query: 627 TMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
IA+++ T+ ++TT + + P
Sbjct: 641 CNIALYE-----------HTINKDTTHLEIEP 661
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 212/670 (31%), Positives = 354/670 (52%), Gaps = 87/670 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q LDS++ F+ + +++IV+ + ++ +++VE P + L
Sbjct: 51 WQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKV---------TSDVE--PWFYL 99
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDI----TKTVVRQGEEPVTT 122
K+ I + P + D + + P+E RLR+LTY A +YVDI K VVR+ P
Sbjct: 100 KYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYTRGKQVVRRRNVP--- 156
Query: 123 QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 182
IG++P+MLRS C+L+G + ++ LNECPLDPGGYFI+ G+EKV++ QE+++
Sbjct: 157 ------IGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSK 210
Query: 183 NTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPY 242
N + V + K ++ + S T + N G LK +++
Sbjct: 211 NRIIV-EAEPKKGLWQASVTSSTHERKSKTYVITKN----GKLYLKHNSVAD-------- 257
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNF 300
+IPI++V +A+G +D++I E + + ++ PS++E I AL +
Sbjct: 258 ---DIPIVVVLKAMGLQSDQEIFELVA--GAEASYQDLFAPSIEECAKLNIYTAQQALEY 312
Query: 301 IGAR---GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
IGAR R G + + A E+L +L H+ V + KA ++G M R+L+A +
Sbjct: 313 IGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMV 372
Query: 358 GRRELDDRDHYV---------RMYAQKFIDRGKDFNL----------------------- 385
++DDRD YV ++ A F D K FN
Sbjct: 373 DPLQVDDRD-YVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYN 431
Query: 386 ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGR 445
+L + + IT G+ +L+TGNW K+ RAGV+ VL+RL++ S+L + R+ S +
Sbjct: 432 QLTVHSDHITQGMVRALSTGNW-SLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEK 490
Query: 446 DGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSME 505
K++ PR L + +GM+C ++TPEG A GLVKNLALM +I+ + PI++ + +E
Sbjct: 491 TRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIE 550
Query: 506 NLEEIAPSAIADATK--IFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRD 563
++ I+ + +++NG +GI R P + + RKLRR I + I +
Sbjct: 551 DIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGK-ISPFIGIFINTHQ 609
Query: 564 REIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLE 623
R + I TD GRICRPL+I +NG ++ +HI LKE +G++ ++ G+VEY+D E
Sbjct: 610 RAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKE---GKWGFEDFLKQGLVEYVDVNE 666
Query: 624 EETTMIAMWQ 633
E ++I++++
Sbjct: 667 ENDSLISVYE 676
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 315 bits (806), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 215/689 (31%), Positives = 356/689 (51%), Gaps = 92/689 (13%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q +DSF+ FI + +++IV+ + + A+ P + L
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGAD-----------PLFYL 83
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K+ + + KP + P+E RLR+ TYSAP+ VDI T +G + + +
Sbjct: 84 KYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYT---RGTQRI--KRNN 138
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
IG++P+MLR + C L G ++ +L++LNECPLDPGGYF++ G EKV++ QE+++ N +
Sbjct: 139 LLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKML 198
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
+D + ++ S T L G LK +++ +
Sbjct: 199 T---EDFNGVVQCQVTSSTHEKKSRTLVL----SKHGKYYLKHNSM-----------TDD 240
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ--EQNVALNFIGAR 304
IPI+++F+ALG V+D++I I D + SL +A+ ++ Q AL ++G++
Sbjct: 241 IPIVVIFKALGVVSDQEIQSLIGID---SKSQNRFGASLIDAYNLKVFTQQRALEYMGSK 297
Query: 305 ---GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
T + + ARE+L +L HV V +F KA ++ MV R++ A L +
Sbjct: 298 LVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTL 357
Query: 362 LDDRDHYVR--------MYAQKFIDRGKDFNLELA--------------------IKTKI 393
DDRD+Y + + F D K N EL ++
Sbjct: 358 FDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQ 417
Query: 394 ITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
IT GL ++++GNW K+ RAGV+QVL+RL++ S+L + RVNS + K++ PR
Sbjct: 418 ITAGLESAISSGNW-TIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPR 476
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
L + WGM+CP++TPEG A GLVKNLALM +I+ + P++ +E++ E++ +
Sbjct: 477 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGN 536
Query: 514 AIADATK--IFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTD 571
I + +F+NG +G+ + + L+ LR +RR+ + S VS+ R I IHTD
Sbjct: 537 PINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRK-GRMGSYVSVHTSYTQRCIYIHTD 595
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
GR+CRP +I EN L+K+ H+D L R ++++ + G++EY+D EE + I
Sbjct: 596 GGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDF-----LLDGLIEYLDVNEENDSFI 650
Query: 630 AMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
A W D +E+ TT + + P
Sbjct: 651 A-WNE----------DQIEDRTTHLEIEP 668
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1
SV=2
Length = 1149
Score = 302 bits (773), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 207/664 (31%), Positives = 345/664 (51%), Gaps = 82/664 (12%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q LDSF+ F+ +++I++ + Q+ L + P + L
Sbjct: 45 WHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIK-ANQLILS----------DVDPEFYL 93
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K+ I + K + +P P+E RLR++TYSAP+YVDI T R H+
Sbjct: 94 KYVDIRVGKKSSSSTKDYLTP--PHECRLRDMTYSAPIYVDIEYTRGRN-----IIMHKD 146
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
IG++PIMLRS C+L + + +LNECPLDPGGYFI+NG+EKV++ QE+++ N +
Sbjct: 147 VEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRII 206
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + D K K +++ + S+ + + G LK ++I + E
Sbjct: 207 VEA--DEK---KGIVQASVTSSTHERKSKTYVITKNGKIYLKHNSIAE-----------E 250
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFIGAR 304
IPI IV +A G ++D +I++ + +D ++ +L+E+ I Q AL +IGA+
Sbjct: 251 IPIAIVLKACGILSDLEIMQLVC--GNDSSYQDIFAVNLEESSKLDIYTQQQALEYIGAK 308
Query: 305 GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDD 364
K ++ E + ++ H+ V +KA ++ M R+++A + +DD
Sbjct: 309 VKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDD 368
Query: 365 RDHYV---------RMYAQKFIDRGKDFN-----------------------LELAIKTK 392
RD YV ++ + F D K FN L + + +
Sbjct: 369 RD-YVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSN 427
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IT GL +++TGNW K+ RAGV+ VL+RL++ S+L + R++S + K++ P
Sbjct: 428 NITSGLNRAISTGNWS-LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGP 486
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP 512
R L + +GM+C A+TPEG A GLVKNLALM +I+ + PI + +E++ I
Sbjct: 487 RALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDITLIDS 546
Query: 513 SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE-VSIIRDIRDREIRIHTD 571
+++ +++NG +G R P + + R LRR VSE +SI + + I TD
Sbjct: 547 ASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGK--VSEFISIYSNSHQMAVHIATD 604
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNL--KERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
GRICRPL+I +G +K H+ L E D++++ ++ G+VEY+D EE + I
Sbjct: 605 GGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDF-----LKLGLVEYLDVNEENDSYI 659
Query: 630 AMWQ 633
A+++
Sbjct: 660 ALYE 663
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 279 bits (714), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 206/707 (29%), Positives = 342/707 (48%), Gaps = 133/707 (18%)
Query: 9 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL-- 66
+++AYF + G+V QLDS + F D+P +Q T + P Y +
Sbjct: 4 IVDAYFKKYGIVNHQLDSMNSFYA------TPDNPNSVMQQIVDETKVSDDADPGYFVLD 57
Query: 67 -----------------------KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAP 103
+ I++ KP E G+ + + PNEARLR+L Y AP
Sbjct: 58 PAKTGGHDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAP 117
Query: 104 --LYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLN---------------GL 146
L + I + + +G E + +G +P+M+RS C L+ GL
Sbjct: 118 VTLKLRIVEDGIEKGSEIIK-------VGDLPVMVRSKICTLSEENLDQYIEKNNGPIGL 170
Query: 147 TDRD-LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCL 205
+ R+ L + E P DPGGYFII GSE+V+++ E +A N + V + +Y K E+
Sbjct: 171 SRREKLQYVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMV--EWEDRYESKVEVSKVF 228
Query: 206 EHSSRPTSTLWVNMMARGG----QSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVAD 261
RGG S++K G ++I P + +P++I+ +ALG D
Sbjct: 229 SQ--------------RGGFRALTSMEKGTDGTINVSI-PSVAGTVPLVILMKALGLERD 273
Query: 262 RDI---------LEHIIY-DFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVT 311
D+ +E IIY + +D + +++ P+ + A++++ R A G
Sbjct: 274 VDVHDAIASVPEMEPIIYSNIEDSKNPKVLPPN-----GVNTTEDAISYLEKRFA-AGQA 327
Query: 312 KERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY--- 368
KE R K ++L +LPH+G S +KA +LG M LL SLG R+ DD+DH
Sbjct: 328 KEFRDKKISQMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANK 387
Query: 369 -----------------------VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATG 405
++ +K +R + + A++ ++T + ++++TG
Sbjct: 388 RIKLAGDLMDELFRSAFQSVMKDLKYQLEKTYNRKRGIKIRPAVRQDLLTQRVLHAMSTG 447
Query: 406 NWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 465
NW R GVSQ+L+R++ S++SHLRR+ SP+ R + R LH T WG ICP
Sbjct: 448 NW------IGGRTGVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRICP 501
Query: 466 AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 525
ETPEG GLVKN AL+ ++ G P ++E L+ + + E +P ++++NG
Sbjct: 502 NETPEGQNCGLVKNAALLINVTQGIDPDSVMEILKGMDVREVLEESPK----KGRVYLNG 557
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG 585
++G H DP L+ +R+ RR + EV++ D E+ +++D GR+ RPLLI ++G
Sbjct: 558 DFIGYHDDPRYLVSRIREERRS-GRMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKDG 616
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMW 632
+L + I+ LK + ++ LV+ G +E++D EEE T +A++
Sbjct: 617 KTVLDRTMIERLK---HGEISFEDLVKQGAIEWLDAEEEEDTYVAVY 660
>sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB2 PE=3 SV=1
Length = 519
Score = 279 bits (714), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 175/543 (32%), Positives = 288/543 (53%), Gaps = 81/543 (14%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+++ W +++A+FD+ LV + S+++F+ +Q I++ S I+L+
Sbjct: 8 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIELEQ------------G 55
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
+Y ++ ++ + KP E DGS S + P EARLRNLTYSA + +++ + + G E T
Sbjct: 56 KYRVETGKVSIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-RLLKEGGPE---T 111
Query: 123 QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 182
+ +K +IG++P+ML+S C L+GL+ ++L E E P DPGGYFI+NGSE+ ++ E++A
Sbjct: 112 EFEKVYIGELPVMLKSEICHLHGLSRKELMEKGEDPADPGGYFIVNGSERSIVTMEEIAP 171
Query: 183 NTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPY 242
N + + + + I + + R +L + G L+ S PY
Sbjct: 172 NKIILERIGEEDENRARAIVTSIRSGFRARISLEYRKPRKTGVFLRIS---------FPY 222
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDF-------DD------------PEMMEMVKP 283
+ EIP++I+ RALG D++I+ I DF DD EM E+ +
Sbjct: 223 VPGEIPLVILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDRLNLNKKEMKELDEE 282
Query: 284 SLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 343
E + A+ +IG R A+ G+T++ RIK A +++ + +LPH+G +KA
Sbjct: 283 DRREYLI----RSAIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPEKRLEKAT 337
Query: 344 FLGYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFI 377
+L M LL G R D+DHY + ++ +
Sbjct: 338 YLAEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLMEDLLRVAFTSLSRDMSYQLERSL 397
Query: 378 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLR 437
RGK+ +++ A+++ ++T+ L++++ATGNW RAGVSQ+L+R ++ +LSH+R
Sbjct: 398 ARGKEPSVKQAVRSDVLTENLKHAIATGNWVG------GRAGVSQLLDRTSYMGTLSHMR 451
Query: 438 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 497
RV SP+ R + R LH T +G ICP ETPEG GLVKNLAL+A IS GS S + E
Sbjct: 452 RVVSPLSRSQPHFEARDLHPTQFGKICPNETPEGPNCGLVKNLALLAKISEGSDASEVEE 511
Query: 498 FLE 500
++
Sbjct: 512 VIK 514
>sp|P41558|RPOB2_METVS DNA-directed RNA polymerase subunit B'' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB2 PE=3 SV=1
Length = 499
Score = 273 bits (699), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 171/527 (32%), Positives = 281/527 (53%), Gaps = 66/527 (12%)
Query: 8 IVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLK 67
++++A+F E LV+ +DS+D+F++ +Q I+++ T E E Y +
Sbjct: 5 VIVDAFFRENSLVKHHIDSYDDFVENKIQGIIDEV-----------TGVETEIKGGYKVS 53
Query: 68 FEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKS 127
F ++ ++KP + E DGS + P EAR+RNL YSAPLY+++ ++ +G+E T +
Sbjct: 54 FGKVRVTKPINKEADGSVKEITPMEARIRNLAYSAPLYLEMI-PLIGEGDEEKTLSPIEV 112
Query: 128 FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV 187
+IG++P+ML + C L+G ++ D+ E P DP GYFI+NGSEK ++AQE + N +
Sbjct: 113 YIGELPVMLGAKICHLSGKSEEDMINYGEDPKDPLGYFIVNGSEKAVVAQEDLIPNRILC 172
Query: 188 FSM-KDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
+ K++K ++ S H R T+ ++S G ++ P +
Sbjct: 173 EKVEKNNKIVDIAKVFST-RHGFRALCTV------------ERSPDGLLNVS-FPGMPST 218
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA---FVIQEQNVALNFIGA 303
IP++I+ RALG +DR+I+E I D+P ++ + +L EA I AL IG
Sbjct: 219 IPLVILMRALGAESDREIMELI---SDEPTVVMQLVANLQEAREEHGINTTEDALEHIGK 275
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
R A PG KE ++K A IL +LPH+G+ K +LG M + LG R D
Sbjct: 276 RVA-PGQPKEYKLKRAETILCNYLLPHMGIESEKLGAKCKYLGRMAKNSIELYLGSRVED 334
Query: 364 DRDHYVR------------MYAQKFID--------------RGKDFNLELAIKTKIITDG 397
D+DHY ++ F R K+ +++ A+++ ++T+
Sbjct: 335 DKDHYANKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTER 394
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
+R+++ATGNW R GVSQ+L+R ++ +++S LRRV SP+ R + R LH
Sbjct: 395 MRHAMATGNWVG------GRTGVSQLLDRTSYLATVSQLRRVVSPLSRSQPHFEARDLHA 448
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
T WG ICP+ETPEG GLVKNLA+M ++ + I++ ++E +
Sbjct: 449 TQWGKICPSETPEGPNCGLVKNLAVMCKVTTDEEDEGIIQLIKEIGL 495
>sp|Q58444|RPOB2_METJA DNA-directed RNA polymerase subunit B'' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB2 PE=3 SV=1
Length = 498
Score = 272 bits (695), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 177/527 (33%), Positives = 275/527 (52%), Gaps = 69/527 (13%)
Query: 9 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKF 68
+++AYF E GL+ Q++S+++F++ +Q+I+++ I E E Y +K
Sbjct: 7 LVDAYFKEHGLIDHQIESYNDFVENRLQKIIDEVGYI-----------ETEITGGYKVKL 55
Query: 69 EQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSF 128
+I + KP E DGS P+ P EAR+R+LTYS PLY+++T ++ +GE+ + + +
Sbjct: 56 GKIKVGKPVIKEADGSIRPITPMEARIRDLTYSVPLYLEMT-PIIGEGEDAREGETVEVY 114
Query: 129 IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 188
IG++P+ML S C L G + +L +L E P DP GYFIING+EKVLI QE + N +
Sbjct: 115 IGELPVMLGSKICHLYGKSREELIDLGEDPEDPFGYFIINGTEKVLITQEDLIPNRILCE 174
Query: 189 SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIP 248
+ S H R T+ R L + A P + +IP
Sbjct: 175 KAERSGKIVDVAKVFSTRHGFRALCTV-----ERHPDGL--------LYATFPGMPGQIP 221
Query: 249 IMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNV-----ALNFIGA 303
++I+ +ALG D+DI+E I D+ ME+V L+ + +E N+ AL FIG
Sbjct: 222 LVILMKALGAETDKDIIESID---DERFFMEIV---LNIQEIREEHNINSPEDALEFIGK 275
Query: 304 RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
R A PG K+ R+K A +L +LPH+GV+ KK FLG M L G R D
Sbjct: 276 RVA-PGQAKDYRLKRAETVLCNYLLPHLGVTKEDFPKKIRFLGIMARNALELYFGYRGED 334
Query: 364 DRDHYVRMYAQKFID--------------------------RGKDFNLELAIKTKIITDG 397
D+DHY A+ D R K +++ A+++ I+T+
Sbjct: 335 DKDHYAYKRAKLAGDLMEDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTER 394
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
+++++ATG W K GVSQ+L+R ++ ++ S LRR+ SP+ R + R+LH
Sbjct: 395 IKHAMATGTWVGGK------TGVSQLLDRTSYLATNSQLRRIVSPLSRSQPHFEARELHG 448
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
T WG ICP+ETPEG GLVKN A+M ++ S ++E L+ + +
Sbjct: 449 THWGKICPSETPEGPNCGLVKNFAIMCKVTREEDDSKVIELLKSFGI 495
>sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB2 PE=3 SV=1
Length = 515
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 177/549 (32%), Positives = 293/549 (53%), Gaps = 80/549 (14%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
+++ W +++A+FD+ LV + S+++F+ +Q I++ S I+L+ + Q+T VET
Sbjct: 2 KKSAWGLVDAFFDKYDLVDHHIHSYNDFVSNRIQEIIDTSEPIELE-QGQYT---VETG- 56
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
++ + KP E DGS S + P EARLRNLTYSA + +++ + + G E T
Sbjct: 57 -------KVTIEKPFIKEADGSKSKIYPTEARLRNLTYSAHMSLEM-RLLKEGGSE---T 105
Query: 123 QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 182
+ +K IG++P+ML+S C L+GL +L E E P D GGYFI+N SE+ ++ E++A
Sbjct: 106 EFEKVHIGELPVMLKSEICHLHGLGRDELIEKGEDPADLGGYFIVNASERSIVTMEEIAP 165
Query: 183 NTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPY 242
N + + + + I + + R +L + G L+ S PY
Sbjct: 166 NKIILERIGEEDEKRARAIVTSIRSGFRARISLEYRKPRKTGVFLRIS---------FPY 216
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDFD------DPEMMEMVKPSLDE--------- 287
+ E+P++I+ RALG D++I+ I DF+ D + + K LD
Sbjct: 217 VPGELPLVILLRALGLATDQEIITSISDDFNYQMIAADDIQVSLDKLKLDSDKMEEEMDE 276
Query: 288 ----AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAY 343
++I+ A+ +IG R A+ G+T++ RIK A +++ + +LPH+G +KA
Sbjct: 277 EERREYLIRS---AIKYIGNRVAK-GMTEDYRIKRAEDVIDRYLLPHIGTEPDKRLEKAV 332
Query: 344 FLGYMVHRLLLASLGRRELDDRDHY----VRMYA----------------------QKFI 377
+L M LL G R+ D+DHY +R+ ++ +
Sbjct: 333 YLAEMTEMLLQVISGERKPHDKDHYTNKRLRVSGDLMEDLFRVAFTSLTRDMSYRLERSL 392
Query: 378 DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLR 437
RGK+ +++ A+++ ++++ L++++ATGNW RAGVSQ+L+R ++ +LSH+R
Sbjct: 393 ARGKEPSVKQAVRSDVLSENLKHAIATGNWVG------GRAGVSQLLDRTSYMGTLSHMR 446
Query: 438 RVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 497
RV SP+ R + R LH T +G ICP ETPE GLVKNLALMA IS GS P I E
Sbjct: 447 RVVSPLSRSQPHFEARDLHPTQFGKICPNETPESPNCGLVKNLALMAKISEGSDPDEIEE 506
Query: 498 FLEEWSMEN 506
+++ + N
Sbjct: 507 VIKKMGVIN 515
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3
SV=1
Length = 1193
Score = 270 bits (690), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 209/703 (29%), Positives = 350/703 (49%), Gaps = 100/703 (14%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQI------DLQAEAQHTST 56
+E +++ YF GLV+ QL++FD FI ++ I++D I L ++ ++ +
Sbjct: 22 EENRLMLLKDYFQTSGLVKHQLETFDHFIFHDIKTIIDDEASIIFNGKRSLSSQIKNGAV 81
Query: 57 EV----ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV 112
E + + +LKFE ++++KPT D + P+ P EAR + +TY + ++VD+ + V
Sbjct: 82 EEGYNRKESEKIMLKFENVFVAKPTITNDDTTVRPLYPAEARQKMITYDSFVFVDVLEYV 141
Query: 113 VRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEK 172
+R EE + +H + I KIPIMLRS+ C L T ++ EL E DPGGYFIING+E+
Sbjct: 142 LRDEEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIEDPGGYFIINGNER 201
Query: 173 VLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGG-----QSL 227
VLI Q + A N F K S+ ++RS E + ++ + + ++L
Sbjct: 202 VLIGQLRNAYNRSICFRNKFSE-PLTCDMRSMSEETGH---SVLIQLRLNDSPISQKRNL 257
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFD--DPEMMEMVKPSL 285
KK I I+ K IPI VFR L VA D L+ +I D + D ++++V+ +
Sbjct: 258 KKLDKNGTIDLIISQTKTPIPISFVFRVLK-VATIDKLKFLIGDEEELDKYLIKIVEETS 316
Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
D + + + ++ + E+ K + ++++M PH+GVS E +KA L
Sbjct: 317 DGG-IFDDMEIEISQEDDFNEENEESTEK--KKITQFIEQDMFPHLGVSSTHE-EKAILL 372
Query: 346 GYMVHRLLLAS--------LGRRELD----------------DRDHY------------- 368
G MV +LLL + +R D DRD+Y
Sbjct: 373 GKMVRKLLLVNETSINANKFAQRANDETNKTNKTNKMYYTQEDRDNYSNKRVETAGVLCF 432
Query: 369 --VRMYAQKFI-------DRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 419
RM ++FI ++ +++ K IT GL +S +TGNWG QK + R G
Sbjct: 433 ELFRMLYKRFIKSNINQLEKRNRVEMDVISKNAFITTGLHFSFSTGNWGVQKNNY-IRTG 491
Query: 420 VSQV-LNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVK 478
V+Q+ N+++F + S+LRR P+G++GK K RQ+H + CP+ETPEG VG+
Sbjct: 492 VAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGITL 551
Query: 479 NLALMAYISVGSQPSPILEFLE--EWSMENLEEIA----PSAIADATKIFVNGCWVGIHR 532
N +++A +S+ + I E +E + +++ EI+ ++ + IFVNG G+
Sbjct: 552 NFSMLAEVSIRTSSVVIKEIIEASHQAFKHVHEISLEENKQFLSKLSIIFVNGGICGLTS 611
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLL----IAENGSLL 588
P+QL+ +R L+ + + +VS + +E+ I +DAGR RP+L I NG+++
Sbjct: 612 KPQQLLSDVRDLKLK-HCLKYDVSAVFIPELKEVHISSDAGRFIRPVLNLQSIKTNGNVM 670
Query: 589 LKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+Q +++G V Y D E E + IA+
Sbjct: 671 WN---------------SFQNCLENGHVVYKDAYEIEQSQIAI 698
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 242 bits (618), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 198/700 (28%), Positives = 332/700 (47%), Gaps = 99/700 (14%)
Query: 3 QEACWIVINAYF--DEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
QEA + +++ +F D++ LV+ +DSF++FI+ + I++ + + ++
Sbjct: 17 QEAHFALLDLFFEKDKQVLVKHHIDSFNQFIEEIIPNILQGGDNVISEKATENKII---- 72
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPL------YVDITKTVVR 114
RY L F + + PT ++ + + P +A + ++YSA + DI +
Sbjct: 73 --RYRLTFNDLGIKPPTLENEE---NLLYPLDAIRKQISYSAKYTATVTQWQDIVDIDTK 127
Query: 115 QGEEPVTTQHQKSF-IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV 173
+ E + +K I KIPIM+ S YC LT R C D GGYFI+NGSEKV
Sbjct: 128 KTETRIIGSPEKDVPIAKIPIMVLSKYC---NLTLRPDIAGKHCKYDAGGYFIVNGSEKV 184
Query: 174 LIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAI 232
+++ E M VF+ +D + Y ++S L+ M R
Sbjct: 185 VLSVESMIPRKPVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNS------- 237
Query: 233 GQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA---F 289
II +P+ K E+ I RALG D DI++ I+ + +++ ++ ++ +
Sbjct: 238 ---IILSIPHFK-EVSIFTFIRALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPS 293
Query: 290 VIQEQNVAL--NFIGA----RGARPGVTKERRIKYAREILQKEMLPHV----GVSDFCET 339
V +E+ + + N I + P V E+R +Y +I+ + +LPH+ G + +
Sbjct: 294 VTKEEALEIMANQIKSTKTFTDTNPEVKAEQRRRYLDKIMTQFVLPHITSGTGDPEIDKI 353
Query: 340 KKAYFLGYMVHRLLLASL-GRREL------DDRDHYV----------------------- 369
KA+++ YM+H+LL L G RE+ DDRD V
Sbjct: 354 YKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKML 413
Query: 370 ----RMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLN 425
+++ K ID K N+ IK I GLR +L+TGN+G Q+R G+SQ+LN
Sbjct: 414 NDCNKIFRTKNIDDKKPPNIIPHIKPNSIEQGLRQALSTGNFGS-----QSRKGLSQMLN 468
Query: 426 RLTFASSLSHLRRVNSPI--GRDGKLAKPRQLHNTLWGMICPAETPEGA-AVGLVKNLAL 482
R+ SLS++RRV +P K+ PR LHNT +G +CP E+PEG GLVKN+A+
Sbjct: 469 RMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAM 528
Query: 483 MAYISVGSQPS-PILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTL 541
M I++ PI+E + LE + K+F+NG W+G+ R+ ++ L
Sbjct: 529 MEGITINMNSQIPIIESYLIGKITTLESANKKRLHQYVKVFLNGNWLGVTRNIIKIHNDL 588
Query: 542 RKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERD 601
R +R + + + V ++ + + E I+TD GR+ RP L + L K +D +
Sbjct: 589 RAMRFRGE-LSRMVGLVLNYKTAEFHIYTDGGRLIRPYLTVTDNKLNFKPEMLDEVN--- 644
Query: 602 YNNYGWQVLVQS--GVVEYIDTLEEETTMIAMWQVLVQSG 639
W+ + V+EY+D EE+ M+A++ +Q
Sbjct: 645 ----SWEEFLAKFPEVIEYVDKEEEQNIMLAVFPQYIQDA 680
>sp|P0CX04|RPOB2_HALSA DNA-directed RNA polymerase subunit B'' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB2 PE=3
SV=1
Length = 523
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 165/512 (32%), Positives = 262/512 (51%), Gaps = 62/512 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE + +YF ++ L S++ F++ +Q +V + +I E E E
Sbjct: 1 MLQEDKRELSESYFSKERLAEHHFRSYNAFLEHGMQDVVTEKERI----ETDIGDKEDEE 56
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P ++ + P E DGS + P EARLRN+TYSAP++++++ + EE
Sbjct: 57 P--VWVELGDVRAVTPRVREADGSEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEER 114
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
++ +G++PIM+ S C ++G +D +L E+ E P DPGGYFIINGSE+VL+ E +
Sbjct: 115 VLDTTETKVGRMPIMVGSDKCNISGFSDEELIEIGEDPADPGGYFIINGSERVLMTSEDL 174
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
A N + + DSKY EI+ S R V ++ R + L + +
Sbjct: 175 APNK--ILAEYDSKYG--DEIQVAKTFSQRRGYRALV-LVERNREGLLEVS--------F 221
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
P + I + + RALG +D +I+ + +DPE+++ + +L+EA V Q Q A+
Sbjct: 222 PSVSGSISFVTLVRALGLESDEEIVHRV---SEDPEIVKFMLENLEEADV-QTQEEAIED 277
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHV---GVSDFCETK--KAYFLGYMVHRLLLA 355
+G R A G K ++K A ++ + +LPH+ GV + ET+ KAY+L M
Sbjct: 278 LGQRVA-SGQGKNYQLKRANYVIDRYLLPHLHEDGVEEE-ETRINKAYYLCRMAEACFEL 335
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+LGRRE DD+DHY V+ ++ R ++ + +
Sbjct: 336 ALGRREADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQLERANMRNRELTVNTVV 395
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
++ ++T+ L + +ATGNW R+GVSQ+++R F LSHLRR+ SP+ R
Sbjct: 396 RSDVLTERLEHPIATGNWVG------GRSGVSQLVDRTDFMGVLSHLRRLRSPLSRSQPH 449
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
+ R LH T WG ICP+ETPEG GLVKN A
Sbjct: 450 FEARDLHATQWGRICPSETPEGPNCGLVKNFA 481
>sp|B0R8D6|RPOB2_HALS3 DNA-directed RNA polymerase subunit B'' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB2 PE=1 SV=1
Length = 523
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 165/512 (32%), Positives = 262/512 (51%), Gaps = 62/512 (12%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
+ QE + +YF ++ L S++ F++ +Q +V + +I E E E
Sbjct: 1 MLQEDKRELSESYFSKERLAEHHFRSYNAFLEHGMQDVVTEKERI----ETDIGDKEDEE 56
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
P ++ + P E DGS + P EARLRN+TYSAP++++++ + EE
Sbjct: 57 P--VWVELGDVRAVTPRVREADGSEELLYPQEARLRNITYSAPVFMEMSIVRGGEEEEER 114
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
++ +G++PIM+ S C ++G +D +L E+ E P DPGGYFIINGSE+VL+ E +
Sbjct: 115 VLDTTETKVGRMPIMVGSDKCNISGFSDEELIEIGEDPADPGGYFIINGSERVLMTSEDL 174
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
A N + + DSKY EI+ S R V ++ R + L + +
Sbjct: 175 APNK--ILAEYDSKYG--DEIQVAKTFSQRRGYRALV-LVERNREGLLEVS--------F 221
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
P + I + + RALG +D +I+ + +DPE+++ + +L+EA V Q Q A+
Sbjct: 222 PSVSGSISFVTLVRALGLESDEEIVHRV---SEDPEIVKFMLENLEEADV-QTQEEAIED 277
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHV---GVSDFCETK--KAYFLGYMVHRLLLA 355
+G R A G K ++K A ++ + +LPH+ GV + ET+ KAY+L M
Sbjct: 278 LGQRVA-SGQGKNYQLKRANYVIDRYLLPHLHEDGVEEE-ETRINKAYYLCRMAEACFEL 335
Query: 356 SLGRRELDDRDHY--------------------------VRMYAQKFIDRGKDFNLELAI 389
+LGRRE DD+DHY V+ ++ R ++ + +
Sbjct: 336 ALGRREADDKDHYANKRLKVSGDLMKDLFRTALNKLARDVKYQLERANMRNRELTVNTVV 395
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
++ ++T+ L + +ATGNW R+GVSQ+++R F LSHLRR+ SP+ R
Sbjct: 396 RSDVLTERLEHPIATGNWVG------GRSGVSQLVDRTDFMGVLSHLRRLRSPLSRSQPH 449
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
+ R LH T WG ICP+ETPEG GLVKN A
Sbjct: 450 FEARDLHATQWGRICPSETPEGPNCGLVKNFA 481
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 163/555 (29%), Positives = 275/555 (49%), Gaps = 79/555 (14%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ +GLV+Q +DSF+ FI + +++IV+ + ++ E P
Sbjct: 37 EEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERL-----------TAENDPS 85
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
Y ++F I + PT E + + P RLR++TYSAP++V+I T +Q
Sbjct: 86 YFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQ-----IIS 140
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
+ IG IPIMLRS+ C+L+ T + L ECP+DPGGYFI+ G EKV++ E+++ N
Sbjct: 141 KRDVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKN 200
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYI 243
+ + M + S E SR TL + LK + G
Sbjct: 201 RI-IIEMDSKGLPSASVTSSTHERKSRTGVTLKNEKLY-----LKHNTFG---------- 244
Query: 244 KQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA--FVIQEQNVALNFI 301
++IP+ IV + +G D+++ + + D + + PSL+E + AL+++
Sbjct: 245 -EDIPVAIVLKGMGVETDQEMAQLV---GSDDVFLNAITPSLEECQKCGVHTAAQALDYL 300
Query: 302 GAR---GARP-GV-TKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
G+R RP GV K+ + + AR+IL +L HV V + K +L M+ R+++AS
Sbjct: 301 GSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMAS 360
Query: 357 LGRRELDDRDHY----VRMYAQ-----------KF--------------IDRGKDFNLEL 387
+ LDD+D+Y + + Q KF +R ++ +L
Sbjct: 361 KDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPK 420
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
I+T IT+G +++++G W + K+ R+GVSQVL+RL++ S + + R+ S +
Sbjct: 421 LIRTDTITNGFTHAISSGQW-NLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTR 479
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
K+A PR L + WGM+CP++TPEG A + M+ Q PI + + S+ L
Sbjct: 480 KVAGPRSLQPSQWGMLCPSDTPEGEACLHPDTIITMS----NGQQKPIRQLKDGDSIITL 535
Query: 508 EEIAPSAIADATKIF 522
+ I A +T+I+
Sbjct: 536 DPITME--AHSTRIY 548
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 93/168 (55%), Gaps = 10/168 (5%)
Query: 474 VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNGCWVGIH 531
GLVKN ALM++++ P+L ++++ + + +A + +NG +GIH
Sbjct: 970 CGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIH 1029
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKK 591
P+ + TLRK+RR I VSI ++ + I + D GR+CRP++I ++ L +
Sbjct: 1030 NSPDYFVTTLRKMRRAGRI-REFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQ 1088
Query: 592 RHIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQ 637
HI++LK+ R ++++ ++ G++EY+D EE + +A + +Q
Sbjct: 1089 EHIEDLKDGLRTFDDF-----IREGIIEYLDVNEENDSFLAWREAAIQ 1131
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 182/638 (28%), Positives = 301/638 (47%), Gaps = 89/638 (13%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
Q C ++FD+ GL+ QL+S++ FI+ +Q + + ++ L + + +
Sbjct: 32 QSFCKKAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEM-LVEPSFDVVKKKDNDW 90
Query: 63 RY-LLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDI-----TKTVVRQG 116
RY +KF ++ + KPT + D +P ARL+N+TYSA + V++ TVV+
Sbjct: 91 RYATVKFGEVTVEKPTFFSDDKELE-FLPWHARLQNMTYSARIKVNVQVEVFKNTVVKSD 149
Query: 117 E-----------EPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
+ + + + Q IG IP+M++S C + ++ + +C D GGYF
Sbjct: 150 KFKTGQDNYVEKKILDVKKQDILIGSIPVMVKSILCKTSE-KGKENCKKGDCAFDQGGYF 208
Query: 166 IINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
+I G+EKV IAQE+M T +++ S + RS +R L N A +
Sbjct: 209 VIKGAEKVFIAQEQMCTKRLWI-----SNSPWTVSFRS-ENKRNRFIVRLSENEKAEDYK 262
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
+K + + ++ EIP+ ++F ALG +D++ ++ I +D DD + + S+
Sbjct: 263 RREK-------VLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASI 315
Query: 286 DEAFVIQEQ----NVALNFIGARGARPGVTKERRIKYAR--------EILQKEMLPHVGV 333
A + E N AL ++ E++IK + E L + P G+
Sbjct: 316 HVADAVCEAFRCGNNALTYV-----------EQQIKSTKFPPAESVDECLHLYLFP--GL 362
Query: 334 SDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRMY------ 372
KKA FLGYMV LL + G+R+ ++RD + +R++
Sbjct: 363 QSL--KKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARR 420
Query: 373 -----AQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNR 426
QK + D +E + +IT+GL + +TG W + + +GV L R
Sbjct: 421 KMTRAMQKHLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGR 480
Query: 427 LTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
+L LRR + GK+ R H + WG +C TP+G GLVKN++L+ +
Sbjct: 481 ANPLQTLIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLV 540
Query: 487 SVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR 546
S S S ++E L ME L + + + K+ +NG WVG+ D E + L+ RR
Sbjct: 541 STQSLES-VVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRR 599
Query: 547 QMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN 584
Q + + E+ I RD D E+RI TDAGR+ RPLL+ EN
Sbjct: 600 QSE-LPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVEN 636
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 210 bits (535), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 173/622 (27%), Positives = 284/622 (45%), Gaps = 102/622 (16%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
Q C ++F+E GL+ QL+S++ FI+ +Q + E I L + + +
Sbjct: 23 QTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFESFGDI-LVEPSFDVIKKKDGDW 81
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
RY F++I + K G YV+ +E +
Sbjct: 82 RYATVFKKIVIKHDKF--KTGQDE------------------YVE---------KEILDV 112
Query: 123 QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMAT 182
+ Q IG IP+M++S C + + + N C D GGYF+I G+EKV IAQE+M T
Sbjct: 113 KKQDILIGSIPVMVKSVLCKTSEKGKENCKKGN-CAFDQGGYFVIKGAEKVFIAQEQMCT 171
Query: 183 NTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPY 242
+++ S ++++E + +R L N A + ++K + + +
Sbjct: 172 KRLWI-SNSPWTVSFRSETKR-----NRFIVRLSENEKAEDYKIMEK-------VLTVYF 218
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ----NVAL 298
+ EIP+ ++F ALG +D++ ++ I +D DD + + S+ EA + E N AL
Sbjct: 219 LSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASIHEADAVCEAFRCGNNAL 278
Query: 299 NFIGARGARPGVTKERRIKYAR--------EILQKEMLPHV-GVSDFCETKKAYFLGYMV 349
++ E +IK + + L+ + P + G+ KKA FLGYMV
Sbjct: 279 TYV-----------EHQIKSTKFPPAESVDDCLRLYLFPCLQGLK-----KKARFLGYMV 322
Query: 350 HRLLLASLGRRELDDRDHY---------------VRMY-----------AQKFIDRGKDF 383
LL A G+R+ ++RD + +R++ QK + D
Sbjct: 323 KCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDGDL 382
Query: 384 N-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSP 442
+E + +IT+GL + +TG W + + +GV L R +L LRR
Sbjct: 383 KPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQ 442
Query: 443 IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW 502
+ GK+ R H + WG +C TP+G GLVKN++L+ +S S ++E L
Sbjct: 443 VLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQGLES-VVEMLFTC 501
Query: 503 SMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIR 562
ME L + + K+ +NG WVG+ D E +G L+ RRQ ++ + E+ I RD
Sbjct: 502 GMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSELPL-EMEIKRDKD 560
Query: 563 DREIRIHTDAGRICRPLLIAEN 584
D E+RI TDAGR+ RPLL+ EN
Sbjct: 561 DNEVRIFTDAGRLLRPLLVVEN 582
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3
SV=1
Length = 1140
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 178/691 (25%), Positives = 307/691 (44%), Gaps = 118/691 (17%)
Query: 9 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKF 68
++ YF GLV+ Q+++F+ FI ++ I+ + I Q+ Y LKF
Sbjct: 22 IVADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHDN-----------YSLKF 70
Query: 69 EQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV-VRQGEEPVTTQHQKS 127
IY+ P+ + D + + P EAR ++L+Y+ + V++ + V ++G+ P ++ +
Sbjct: 71 TNIYVEYPSIIDDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRV 130
Query: 128 FIGKIPIMLRSTYCLLNGLTDRDLTELN-ECPLDPGGYFIINGSEKVLIAQEKMATN--T 184
I KIPIML S C L+ T + ++N D GGYFIING E+VLI+Q + A N
Sbjct: 131 PIAKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPV 190
Query: 185 VYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIK 244
+V S + E+RS E + TS + V M I +I+ L +
Sbjct: 191 CFVKSTSQKEDVLICEMRSMCEETFHSTS-VQVKM------------IKNKIMVSLKLKR 237
Query: 245 Q--EIPIMIVFRALGFVADR------------------------DILEHIIY-------- 270
+ +IP+ IVF+ LG+ D+ D LE Y
Sbjct: 238 KLIDIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDAIKNDCLEEFAYGIAVSAAD 297
Query: 271 -DFDDPEMMEMVKPSLDE----AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQK 325
D D + D+ V + + +++ G A G+T I+ ++ L
Sbjct: 298 GDNSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAAT-GIT----IEDVQKSLDM 352
Query: 326 EMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VR 370
++ PH+G++ ++ L +MV + LL + +D+RD Y R
Sbjct: 353 DLFPHLGITS-TRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFR 411
Query: 371 MYAQKFID------RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 424
+ +KF R + ++ ++T IT G+ YS ++G WG Q+ + R GVSQV+
Sbjct: 412 LLYKKFQKTCITQIRNRKPDISNFLRTSGITTGILYSFSSGYWGVQRNTY-IRTGVSQVV 470
Query: 425 N-RLTFASSLSHLRRVNSPIGRDGKLAKP---RQLHNTLWGMICPAETPEGAAVGLVKNL 480
N +++ ++ S LRRV P +DGK AK RQ+H + ++CP ETPEG VG V N+
Sbjct: 471 NPKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGTVLNM 530
Query: 481 ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT 540
A+ ++ G I++ ++ + ++ + + +NG G G
Sbjct: 531 AVFCQVTTGISTCEIMDQIDSFGVDLKCHCTIKDPNNCLLLLINGSPYG--------NGH 582
Query: 541 LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKER 600
+ R + + +SI+ + I I +DAGR RP+ + I N +
Sbjct: 583 ANVIHRLNFLNDTNISIVVNRALGVIEIFSDAGRFIRPIFDLD---------KICNFEGE 633
Query: 601 DYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
++ W + + ++ YID E IA+
Sbjct: 634 IVPSFKW--FLDNQLIRYIDINEAAANSIAI 662
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Frog virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 164/639 (25%), Positives = 264/639 (41%), Gaps = 117/639 (18%)
Query: 9 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKF 68
V +A VR ++SFD+ + +V + ++ Y +KF
Sbjct: 87 VSSANMHPSNFVRHHIESFDDMLWNEFPAMVAREKPVSVKG--------------YRVKF 132
Query: 69 EQIYLSKPTHWEKDGSP-SPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKS 127
+ P DG P + P AR + TY + D+T T + E T + +
Sbjct: 133 GTVRYEPPC---PDGKPWEKLTPAMARRTDATYHSAAVCDLTVTDPKGLE----TVYPRL 185
Query: 128 FIGKIPIMLRSTYCLLNGLTDRDLTEL-NECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
+ KIP+M+ S C T + + L ECP DPGGYFII G E+V++ + A +
Sbjct: 186 ELCKIPVMVGSAVCW----TRTEGSPLPGECPSDPGGYFIIKGKERVVVPHIRPAYDQPC 241
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V+ D + E RS + +R T + R +++ LPYIKQ
Sbjct: 242 VYKNGD---GWLCEFRS-VNRETRQTVLVQAKTDCR-----------RKLEFSLPYIKQY 286
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL-------- 298
+P+ +VF+ALG A + + F E+ A ++ EQ+ +
Sbjct: 287 VPVGLVFKALGKTAREAVAMCGLGSFLGDEVSCRTVHHQSMAALLMEQHASAPEDPVADL 346
Query: 299 -------------NFIGARGA----RPGVTKERRIK-----YAREILQKEMLPHVGVSDF 336
GA+ A R V ++R K Y R +L E+ H G
Sbjct: 347 AKHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNAKGSKEDYVRHVLAGEIFLHGG---- 402
Query: 337 CETKKAYFLGYMVHRLLLASLGRRELDDRD-----------------------HYVRMYA 373
A LG+MV R+ A+ G DRD YV+++
Sbjct: 403 ---DAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLLKQYVKLFV 459
Query: 374 QKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQA--RAGVSQVLNRLTFAS 431
+ + + + ++T+ L ATGNW ++ + R GVSQVL+ + +
Sbjct: 460 KSAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWTVKRLGPPSYVRVGVSQVLSNNNYGA 519
Query: 432 SLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQ 491
+SHLRR+ + GK + RQLH++ +G +CP ETPEG VG+V N+A A S+ +
Sbjct: 520 RVSHLRRIMHAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNMAEGAGFSLETP 579
Query: 492 PSPILEFLE-EWSMENLEEIAP-----SAIADATKIFVNGCWVGIHRDPEQLMGTLRKLR 545
+L + + E AP S A + + V+G G+ DP +G +R+ R
Sbjct: 580 REVVLATVRLGKGLPGFFEGAPARLAWSGAAGSASVDVDGVLCGVTGDP---VGFVREAR 636
Query: 546 RQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAEN 584
+ + VS++ +REI + GR R +L E
Sbjct: 637 ----LCLPGVSVVWKKVEREIHLLGCQGRFVRRVLDPEG 671
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 174/733 (23%), Positives = 306/733 (41%), Gaps = 93/733 (12%)
Query: 10 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET---PPRYLL 66
I+A + GL+ + SFD+ + + +IV+ +D+ + Q TE++ +
Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQF 89
Query: 67 KFEQIYLSKPTHWE-KDGSPSPMMPNEARLRNLTYSAPLYVD---ITKTVVRQGEEPVTT 122
F + + +P H G+ ++PN+ARL L+YS P+ + I G + V
Sbjct: 90 NFTDVNIERPQHRNYSQGNKINLLPNKARLSGLSYSGPVKLAAEVILTAHYSNGRQEVKR 149
Query: 123 QHQKSF-IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
F + PIM S C + L+ E+ E P +PGGYFI G E V+ E +
Sbjct: 150 ASIPPFQVSTFPIMRGSNRCHTHDLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLENIR 209
Query: 182 TNTVYVFS---MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
NT+++ + + + E S + +S + + M G +++ I
Sbjct: 210 FNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIE--------IN 261
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE-----MMEMVKPSL---DEAF- 289
+ K IP ++FR G D I+E +++D + M+E+++ S+ D F
Sbjct: 262 STKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFMIEILEKSIHVSDPIFQ 321
Query: 290 -VIQEQN--VALNFIGARGAR----PGVTK--ERRIKYARE----ILQKEMLPHVGVSDF 336
V E N + F+ + ++ P K E ++Y E IL K +LPH+G +
Sbjct: 322 PVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQTAD 381
Query: 337 CETKKAYFLGYMVHRLLLASLGRRELDDRDHY-VRMYAQKFIDRGKDFNL---------- 385
+K FLG ++H++LL + DRD Y + + K F
Sbjct: 382 TRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIAPI 441
Query: 386 -----ELAIKTKI-------ITDGLRYSLATGNWGDQKKAHQ-------------ARAGV 420
EL +T I + +L+ D ++ + R V
Sbjct: 442 INGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRPIV 501
Query: 421 SQV----LNRLTFASSLSHLRRVNSPIGRDG-----KLAKPRQLHNTLWGMICPAETPE- 470
++V L R +++S LR VN+ + + R++H + G IC A++ +
Sbjct: 502 NRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERADMMRRVHASYPGYICVAQSADT 561
Query: 471 GAAVGLVKNLALMAYI-SVGSQPSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNGCW 527
G VG+ K LA+ A + + G S L + +++ L +++ I ++F+NG W
Sbjct: 562 GEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFINGEW 621
Query: 528 VGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSL 587
+G + +L R LRR+ I+ +I D E+ D GR+ RPLLI +N
Sbjct: 622 IGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNNIE 681
Query: 588 LLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA---MWQVLVQSGVVEYI 644
+ + R N W+ S V T + ++A + LV G+ E+I
Sbjct: 682 KYNEACYKAAEARKKGNKDWEKHKISFVQNTRFTSQMAKAILAGTLTLEDLVAQGICEFI 741
Query: 645 DTLEEETTMIAMS 657
E E ++A S
Sbjct: 742 TPEEAENCLVAFS 754
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 174/735 (23%), Positives = 307/735 (41%), Gaps = 97/735 (13%)
Query: 10 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET---PPRYLL 66
I+A + GL+ + SFD+ + + +IV+ +D+ + Q TE++ +
Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQF 89
Query: 67 KFEQIYLSKPTHWE-KDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV-----RQGEEPV 120
F + + +P H G+ ++PN+ARL L+YS P V++ V+ G + V
Sbjct: 90 NFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLAAEVILTAHYSNGRQEV 147
Query: 121 TTQHQKSF-IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
F + PIM S C + L+ E+ E P +PGGYFI G E V+ E
Sbjct: 148 KRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLEN 207
Query: 180 MATNTVYVFS---MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
+ NT+++ + + + E S + +S + + M G +++
Sbjct: 208 IRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIE-------- 259
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE-----MMEMVKPS---LDEA 288
I + K IP ++FR G D I+E +++D + M+E+++ S LD
Sbjct: 260 INSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFMIEILEKSIHVLDPI 319
Query: 289 F--VIQEQN--VALNFIGARGAR----PGVTK--ERRIKYARE----ILQKEMLPHVGVS 334
F V E N + F+ + ++ P K E ++Y E IL K +LPH+G +
Sbjct: 320 FQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQT 379
Query: 335 DFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-VRMYAQKFIDRGKDFNL-------- 385
+K FLG ++H++LL + DRD Y + + K F
Sbjct: 380 ADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIA 439
Query: 386 -------ELAIKTKI-------ITDGLRYSLATGNWGDQKKAHQ-------------ARA 418
EL +T I + +L+ D ++ + R
Sbjct: 440 PIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRP 499
Query: 419 GVSQV----LNRLTFASSLSHLRRVNSPIGRDG-----KLAKPRQLHNTLWGMICPAETP 469
V++V L R +++S LR VN+ + + R++H + G IC A++
Sbjct: 500 IVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSA 559
Query: 470 E-GAAVGLVKNLALMAYI-SVGSQPSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNG 525
+ G VG+ K LA+ A + + G S L + +++ L +++ I ++F+NG
Sbjct: 560 DTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFING 619
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG 585
W+G + +L R LRR+ I+ +I D E+ D GR+ RPLLI +N
Sbjct: 620 EWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNN 679
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA---MWQVLVQSGVVE 642
+ + R + W+ V T + ++A + LV G+ E
Sbjct: 680 IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDILAGTLTLEDLVAQGICE 739
Query: 643 YIDTLEEETTMIAMS 657
+I E E ++A S
Sbjct: 740 FITPEEAENCLVAFS 754
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 174/735 (23%), Positives = 307/735 (41%), Gaps = 97/735 (13%)
Query: 10 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET---PPRYLL 66
I+A + GL+ + SFD+ + + +IV+ +D+ + Q TE++ +
Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQF 89
Query: 67 KFEQIYLSKPTHWE-KDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV-----RQGEEPV 120
F + + +P H G+ ++PN+ARL L+YS P V++ V+ G + V
Sbjct: 90 NFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLAAEVILTAHYSNGRQEV 147
Query: 121 TTQHQKSF-IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
F + PIM S C + L+ E+ E P +PGGYFI G E V+ E
Sbjct: 148 KRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLEN 207
Query: 180 MATNTVYVFS---MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
+ NT+++ + + + E S + +S + + M G +++
Sbjct: 208 IRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIE-------- 259
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE-----MMEMVKPS---LDEA 288
I + K IP ++FR G D I+E +++D + M+E+++ S LD
Sbjct: 260 INSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSLVNTFMIEILEKSIHVLDPI 319
Query: 289 F--VIQEQN--VALNFIGARGAR----PGVTK--ERRIKYARE----ILQKEMLPHVGVS 334
F V E N + F+ + ++ P K E ++Y E IL K +LPH+G +
Sbjct: 320 FQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQT 379
Query: 335 DFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-VRMYAQKFIDRGKDFNL-------- 385
+K FLG ++H++LL + DRD Y + + K F
Sbjct: 380 ADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIA 439
Query: 386 -------ELAIKTKI-------ITDGLRYSLATGNWGDQKKAHQ-------------ARA 418
EL +T I + +L+ D ++ + R
Sbjct: 440 PIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRP 499
Query: 419 GVSQV----LNRLTFASSLSHLRRVNSPIGRDG-----KLAKPRQLHNTLWGMICPAETP 469
V++V L R +++S LR VN+ + + R++H + G IC A++
Sbjct: 500 IVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSA 559
Query: 470 E-GAAVGLVKNLALMAYI-SVGSQPSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNG 525
+ G VG+ K LA+ A + + G S L + +++ L +++ I ++F+NG
Sbjct: 560 DTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFING 619
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG 585
W+G + +L R LRR+ I+ +I D E+ D GR+ RPLLI +N
Sbjct: 620 EWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNN 679
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA---MWQVLVQSGVVE 642
+ + R + W+ V T + ++A + LV G+ E
Sbjct: 680 IEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTRFTSQMAKDILAGTLTLEDLVAQGICE 739
Query: 643 YIDTLEEETTMIAMS 657
+I E E ++A S
Sbjct: 740 FITPEEAENCLVAFS 754
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 173/739 (23%), Positives = 306/739 (41%), Gaps = 105/739 (14%)
Query: 10 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET---PPRYLL 66
I+A + GL+ + SFD+ + + +IV+ +D+ + Q TE++ +
Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQF 89
Query: 67 KFEQIYLSKPTHWE-KDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV-----RQGEEPV 120
F + + +P H G+ ++PN+ARL L+YS P V++ V+ G + V
Sbjct: 90 NFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLAAEVILTAHYSNGRQEV 147
Query: 121 TTQHQKSF-IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
F + PIM S C L+ E+ E P +PGGYFI G E V+ E
Sbjct: 148 KRASIPPFQVSTFPIMRGSNRCHTYHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLEN 207
Query: 180 MATNTVYVFS---MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
+ NT+++ + + + E S + +S + + M G +++
Sbjct: 208 IRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIE-------- 259
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE-----MMEMVKPSL---DEA 288
I + K IP ++FR G D I+E +++D + M+E+++ S+ D
Sbjct: 260 INSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFMIEILEKSIHVSDPI 319
Query: 289 F--VIQEQN--VALNFIGARGAR----PGVTK--ERRIKYARE----ILQKEMLPHVGVS 334
F V E N + F+ + ++ P K E ++Y E IL K +LPH+G +
Sbjct: 320 FQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQT 379
Query: 335 DFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-VRMYAQKFIDRGKDFNL-------- 385
+K FLG ++H++LL + DRD Y + + K F
Sbjct: 380 ADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIA 439
Query: 386 -------ELAIKTKI-------ITDGLRYSLATGNWGDQKKAHQ-------------ARA 418
EL +T I + +L+ + D ++ + R
Sbjct: 440 PIINGFKELLKQTAFEDLTQRNIIEAFSAALSKNSASDLNRSMEQSIISGNKTIMVRQRP 499
Query: 419 GVSQV----LNRLTFASSLSHLRRVNSPIGRDG-----KLAKPRQLHNTLWGMICPAETP 469
V++V L R +++S LR VN+ + + R++H + G IC A++
Sbjct: 500 IVNRVSTQSLERKNLLNTISALRTVNTHSTTNASKQTERADMMRRVHASYPGYICVAQSA 559
Query: 470 E-GAAVGLVKNLALMAYI-SVGSQPSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNG 525
+ G VG+ K LA+ A + + G S L + +++ L +++ I ++F+NG
Sbjct: 560 DTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFING 619
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG 585
W+G + +L R LRR+ I+ +I D E+ D GR+ RPLLI +N
Sbjct: 620 EWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNN 679
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA-------MWQVLVQS 638
K + R + W + + +I + M + LV
Sbjct: 680 IEKYNKACYKAAEARKKGDKDW----EKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQ 735
Query: 639 GVVEYIDTLEEETTMIAMS 657
G+ E+I E E ++A S
Sbjct: 736 GICEFITPEEAENCLVAFS 754
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3
SV=1
Length = 1242
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 172/739 (23%), Positives = 305/739 (41%), Gaps = 105/739 (14%)
Query: 10 INAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET---PPRYLL 66
I+A + GL+ + SFD+ + + +IV+ +D+ + Q TE++ +
Sbjct: 30 ISAAVNSTGLIGYNIKSFDDLMDNGIPQIVKQMFNVDITYKDQRDHTEIDKLRESVQIQF 89
Query: 67 KFEQIYLSKPTHWE-KDGSPSPMMPNEARLRNLTYSAPLYVDITKTVV-----RQGEEPV 120
F + + +P H G+ ++PN+ARL L+YS P V++ V+ G + V
Sbjct: 90 NFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGP--VNLAAEVILTAHYSNGRQEV 147
Query: 121 TTQHQKSF-IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK 179
F + PIM S C + L+ E+ E P +PGGYFI G E V+ E
Sbjct: 148 KRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKEIGEDPNEPGGYFIARGGEWVVDLLEN 207
Query: 180 MATNTVYVFS---MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
+ NT+++ + + + E S + +S + + M G +++
Sbjct: 208 IRFNTLHIHYHTMQQGNNEIIRGEFISQPGGAFENSSQIIIRYMTTGAITIE-------- 259
Query: 237 IAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE-----MMEMVKPS---LDEA 288
I + K IP ++FR G D I+E +++D + M+E+++ S LD
Sbjct: 260 INSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVFDLESNSPVNTFMIEILEKSIHVLDPI 319
Query: 289 F--VIQEQN--VALNFIGARGAR----PGVTK--ERRIKYARE----ILQKEMLPHVGVS 334
F V E N + F+ + ++ P K E ++Y E IL K +LPH+G +
Sbjct: 320 FQPVQHEPNREKIIQFLSEKVSKFVSNPSAYKSDENAVQYLNERQLTILDKILLPHMGQT 379
Query: 335 DFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY-VRMYAQKFIDRGKDFNL-------- 385
+K FLG ++H++LL + DRD Y + + K F
Sbjct: 380 ADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSYRTKRVHGSGVSLAKAFKAIFNTSVIA 439
Query: 386 -------ELAIKTKI-------ITDGLRYSLATGNWGDQKKAHQ-------------ARA 418
EL +T I + +L+ D ++ + R
Sbjct: 440 PIINGFKELLKQTAFEELTQRNIIEAFSAALSKNTASDLNRSMEQSIISGNKTIMVRQRP 499
Query: 419 GVSQV----LNRLTFASSLSHLRRVNSPIGRDG-----KLAKPRQLHNTLWGMICPAETP 469
V++V L R +++S LR VN+ + + R++H + G IC A++
Sbjct: 500 IVNRVSTQSLERKNLLNTISALRTVNTHNTTNASKQTERADMMRRVHASYPGYICVAQSA 559
Query: 470 E-GAAVGLVKNLALMAYI-SVGSQPSPILEFLEEWSMENLEEIAPSAIA--DATKIFVNG 525
+ G VG+ K LA+ A + + G S L + +++ L +++ I ++F+NG
Sbjct: 560 DTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSDPAIQQLADVSNKDIVRKGLARVFING 619
Query: 526 CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG 585
W+G + +L R RR+ I+ +I D E+ D GR+ RPLLI +N
Sbjct: 620 EWIGCCTNAFELAQRYRMFRREGKIVHPHTTIYWDSMVDEVEFWLDVGRLTRPLLIVDNN 679
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIA-------MWQVLVQS 638
+ + R + W + + +I + M + LV
Sbjct: 680 IEKYNQACYKAAEARKKGDKDW----EKHKIPFIQNTRFTSQMAKDILAGTLTLEDLVAQ 735
Query: 639 GVVEYIDTLEEETTMIAMS 657
G+ E+I E E ++A S
Sbjct: 736 GICEFITPEEAENCLVAFS 754
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes
octocarinatus GN=RPA2 PE=3 SV=2
Length = 1166
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 138/548 (25%), Positives = 234/548 (42%), Gaps = 93/548 (16%)
Query: 11 NAYFDEK-------GLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
NA FD K + R +DSFD + + R E D + S + +
Sbjct: 4 NAKFDRKEISKIYKNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFK---K 60
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
L ++ L +P+ E D + P+E R R +TY+ PL+ I K + +E V
Sbjct: 61 LTLWYDSFELGQPSLGEIDYDSHILYPSECRQRKMTYTIPLFATIFK---KFDDEMVDNF 117
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
K +G IP M R +C L GLT ++L + E L+ GGYFI+NG+EKV+ + +
Sbjct: 118 KVK--LGDIPTMGRKKFCNLKGLTKKELAKRGEDMLEFGGYFIVNGNEKVI--RMLIVPK 173
Query: 184 TVYVFSMKDSKYA--------YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
+ + K SK+ Y ++R + + T TL ++ G SL+
Sbjct: 174 RNFPIAFKRSKFLERGKDFTDYGVQMRCVRDDFTAQTITL--TYLSDGSVSLR------- 224
Query: 236 IIAILPYIKQE--IPIMIVFRALGFVADRDILEHIIY-DFDDPEMMEMVKP--SLDEAFV 290
L Y KQE IPI+++ +AL DR I E I+ +F+ ++ + V+ ++ +
Sbjct: 225 ----LIYQKQEFLIPIILILKALKNCTDRQIYERIVKGNFNQRQISDRVEAILAVGKDLN 280
Query: 291 IQEQNVALNFIGARG--ARPGVTKERR-IKYAREILQKEMLPHVGVSDFCETKKAYF--L 345
I + + + IG+R G+T E I L K + H ++ +A F L
Sbjct: 281 IYDSDQSKALIGSRFRIVLAGITSETSDIDAGDLFLSKHICIHT------DSYEAKFDTL 334
Query: 346 GYMVHRLLLASLGRRELDDRDH------------YVRMYAQKFID--------------R 379
M+ +L + ELD+ D Y+++ ++K D +
Sbjct: 335 ILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSEKLFDCLHINLRARLNKELK 394
Query: 380 GKDF----------NLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLT 428
+F N ++ +I + LATGN + + +G + ++L
Sbjct: 395 RHNFDPMKFRDVLTNQKINCGIGLIGKRMENFLATGNLISRTNLDLMQTSGFCIIGDKLN 454
Query: 429 FASSLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS 487
LSH R ++ + K R+L WG ICP TP+GA GL+ +++ M+ +
Sbjct: 455 NIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWGFICPVHTPDGAPCGLLNHIS-MSCVP 513
Query: 488 VGSQPSPI 495
+GS+ I
Sbjct: 514 IGSEEKQI 521
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 161/650 (24%), Positives = 271/650 (41%), Gaps = 113/650 (17%)
Query: 17 KGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKP 76
K L++ +DSFD F + +++DS + + H ST+ Y ++F + LS+P
Sbjct: 6 KSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFE----HNSTQ------YKIRFTDLKLSRP 55
Query: 77 TH--WEKDGSPSPMMPNEARLRNLTYSAP------LY-------VDITKTVVRQGEEPVT 121
T EK+ + PNE+R TY+AP LY +D V +EP
Sbjct: 56 TRNIVEKE---IKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTH 112
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
T +G++PIM++S YC LNG++ L E E L+ GGYFI+NG+EKV+
Sbjct: 113 TFEVD--LGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTK 170
Query: 182 TNTVYVFSMK-----DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
N K Y C+ RP + N +L GQ
Sbjct: 171 ANHPVALHRKAWTNRGPGYTKNGITIRCV----RPDRSSITN-------NLHYINDGQTT 219
Query: 237 IAILPYIKQE--IPIMIVFRALGFVADRDILEHIIY-DFDDPEMMEMVKPSLDEAFV--I 291
+ L Y +QE +P ++ +AL +++I E+I+ D ++ + + V+ SL E + I
Sbjct: 220 LRFL-YRRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNI 278
Query: 292 QEQNVALNFIGAR-GARPGVTKE-RRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
Q L++IG+R AR IK R + + + H+ + K L M+
Sbjct: 279 NTQEEVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYN----DKYNLLILMI 334
Query: 350 HRLLLASLGRRELDDRD-----------HYVRMYAQ----KFIDRGKDFNLEL------- 387
+L G+ D+ D H M + ++++ K F L+
Sbjct: 335 QKLYAMVGGKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKS 394
Query: 388 ------AIKTKI-----ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASSLSH 435
A+K + I D Y LATGN Q +G + ++L F +SH
Sbjct: 395 GDKLPDALKKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISH 454
Query: 436 LRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP 494
R ++ K R+L WG CP TP+GA GL+ +L+ ++V + P
Sbjct: 455 FRSIHRGAFFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDP 514
Query: 495 ILE--------FLEEWSMENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMGTLRKL 544
++ FL M ++ ++ T I ++G +G + E+++ LR L
Sbjct: 515 TVQKAQTLLPSFLAAHGMLPIDMVSVYQHQYLT-ITLDGRVLGKIEPKAGEEMVKMLRYL 573
Query: 545 R---------RQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG 585
R + M+I + + + + + I + T R RP++ +G
Sbjct: 574 RSMGNEPSIPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTSG 623
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 120/475 (25%), Positives = 202/475 (42%), Gaps = 76/475 (16%)
Query: 69 EQIYLSKPTHWEKDGSPSPM----MPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQH 124
EQ+ ++KP DG S + P+E+R R +Y L + + K V GEE +
Sbjct: 100 EQVSIAKPM--SNDGVSSAVERKVYPSESRQRLTSYRGKLLLKL-KWSVNNGEENLFEVR 156
Query: 125 QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMA 181
G +P+ML+S C LN ++ +L + E + GGYFI+NG EK+ LI Q +
Sbjct: 157 D---CGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNH 213
Query: 182 TNTVY--VFSMKDSKYA-YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+ F+ + + Y+ Y +IRS RP T N++ L + R
Sbjct: 214 PMAIIRPSFANRGASYSHYGIQIRSV-----RPDQTSQTNVL----HYLNDGQVTFR--- 261
Query: 239 ILPYIKQE--IPIMIVFRALGFVADRDILEHII-YDFDDP---EMMEMVKPSLDEAFV-I 291
+ K E +P++++ +AL +DR+I + II D D + +E++ + + +
Sbjct: 262 -FSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHL 320
Query: 292 QEQNVALNFIGA--RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
Q + L ++G R + ++ +E+L + +L H+G D + K L +M+
Sbjct: 321 QNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLG-KDGSQDKFRMLL-FMI 378
Query: 350 HRLLLASLGRRELDDRD-------------------HYVRMYAQKFIDRGK-DFNLELAI 389
+L G D+ D + Y Q I + + D N +AI
Sbjct: 379 RKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINRGMAI 438
Query: 390 KTK--------------IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASSLS 434
K I ++Y L+TGN Q Q +G + V ++ F +S
Sbjct: 439 NFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFIS 498
Query: 435 HLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 488
H R V+ K R+L WG +CP TP+G+ GL+ + A IS
Sbjct: 499 HFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIST 553
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPA2 PE=3 SV=2
Length = 1196
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 124/506 (24%), Positives = 219/506 (43%), Gaps = 88/506 (17%)
Query: 46 DLQAEAQHTSTEVETPPRYL-----LKFEQIYLSKPTHWEKDGSPSP----MMPNEARLR 96
D+ A+ + P YL L Q+ L+KP DG + + P EAR R
Sbjct: 66 DIGAKVVFDGKASDENPNYLGNKLALSVTQVSLTKP--MSNDGVTAAAERNVFPAEARKR 123
Query: 97 NLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNE 156
TY L + + +V GEE T + G +P+ML+S C L+ ++ ++L E E
Sbjct: 124 LTTYRGKLLLKLNWSV-NDGEE---TFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHKE 179
Query: 157 CPLDPGGYFIINGSEKV---LIAQEKMATNTVY--VFSMKDSKYA-YKTEIRSCLEHSSR 210
+ GGYFI+NG EK+ LI Q + + F+ + + Y+ Y +IR C+ R
Sbjct: 180 ESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIR-CV----R 234
Query: 211 PTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE--IPIMIVFRALGFVADRDILEHI 268
P T N++ L + R + K E +P++++ +AL +DR+I + I
Sbjct: 235 PDQTSQTNVL----HYLNDGQVTFR----FSWRKNEYLVPVVLILKALTDASDREIFDGI 286
Query: 269 I-YDFDDP---EMMEMVKPSLDEAFV-IQEQNVALNFIGAR-----GARPGVTKERRIKY 318
+ D + + +E++ + F + + L ++G + A P ++
Sbjct: 287 VGADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSD---YLV 343
Query: 319 AREILQKEMLPHVGVSDFCETKKAYFLGYMVHRL-------------------------- 352
+E+L++ +L H+G + T K+ L +M+ +L
Sbjct: 344 GQELLRRIVLVHLGDEN---TDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGF 400
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRG-----KDFNLELAIKTKI---ITDGLRYSLAT 404
L + + ++++ +++ Q ++RG KD + T+I I L+Y L+T
Sbjct: 401 LYGMIVKEKIEEYLQNIKLQIQADVNRGMPVDFKDRKYMTRVLTRINENIGSKLQYFLST 460
Query: 405 GNWGDQKKAH-QARAGVSQVLNRLTFASSLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGM 462
GN Q Q +G + V ++ F +SH R V+ K R+L WG
Sbjct: 461 GNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGF 520
Query: 463 ICPAETPEGAAVGLVKNLALMAYISV 488
+CP TP+G+ GL+ + A IS
Sbjct: 521 LCPVHTPDGSPCGLLNHFAHKCKIST 546
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 125/525 (23%), Positives = 223/525 (42%), Gaps = 78/525 (14%)
Query: 12 AYFDEKGLVRQQLDSFDEFIQMSVQR--IVEDSPQIDLQAEAQHTSTEVETPPRYLLKFE 69
++ D + V+ +DSF+ + + E + + Q ++ + + +
Sbjct: 21 SFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVD 80
Query: 70 QIYLSKP--THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKS 127
++ ++KP + E+ + P EAR R TY + L + + +V Q +
Sbjct: 81 EVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSV-----NGGPRQSEMR 135
Query: 128 FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNT 184
+G IPIM+RS C L GL+ +L E + GGYFI+NG EK+ LI ++
Sbjct: 136 EVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTA 195
Query: 185 VY--VFSMKDSKYA-YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
+ F+ + + Y+ Y IR S T+TL + + G +
Sbjct: 196 IIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTL--HYLNNGVTMFR-----------FH 242
Query: 242 YIKQE--IPIMIVFRALGFVADRDILEHII-YDFDDPEMMEMVKPSLD--EAFVIQEQNV 296
+ K E IP M++ +AL +D++I E I+ D + + + V+ L +++ + Q
Sbjct: 243 WRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTE 302
Query: 297 ALNFIGAR-GARPGVTKE-RRIKYAREILQKEMLPHVGVSDFCETKKAY-FLGYMVHRLL 353
L ++G++ GV ++ ++ R +LQK +L H+ E K + L +M+ +L
Sbjct: 303 TLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLR-----EAKDKFRLLLFMIRKLY 357
Query: 354 LASLGRRELDDRDHYVR--------MYAQKFIDRGKDF--------NLEL---------- 387
G D+ D +Y Q ++ +D+ NL++
Sbjct: 358 ALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFS 417
Query: 388 ------AIKTKIITD---GLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASSLSHLR 437
+ +KI D L+Y L+TGN Q G + V +L F LSH R
Sbjct: 418 DRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFR 477
Query: 438 RVN-SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLA 481
V+ + K R+L WG +CP TP+G+ GL+ +LA
Sbjct: 478 MVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLA 522
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 4/115 (3%)
Query: 517 DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRIC 576
+ TKI++NG +G +PE+ + +R RR ++ E++I + EI I TD GR
Sbjct: 2 NKTKIYINGKLIGTCDNPEEFVEEIRAKRRSGEV-SHEMNITHYPENHEIYIFTDPGRAR 60
Query: 577 RPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
RPL+I E+G LLK+ H++ L + W L+ G++EY+D EEE T IAM
Sbjct: 61 RPLIIVEDGEPLLKEEHLEKLSSGEME---WDDLISQGIIEYLDAEEEENTYIAM 112
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 519 TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRP 578
TKI++NG +G +PE+ + +RK RR ++ E++I + EI I TD GR RP
Sbjct: 4 TKIYINGKLIGTCENPEEFVEEMRKKRRSGEV-SPEMNITHYPENHEIYIFTDPGRARRP 62
Query: 579 LLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
L+I E+G LL + H++ L + W L+ +G++EY+D EEE IAM
Sbjct: 63 LIIVEDGEPLLTEEHLEKL---ETGEMSWDDLIAAGIIEYLDAEEEENAYIAM 112
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 73/114 (64%), Gaps = 4/114 (3%)
Query: 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPL 579
++++NG VG H + E+L +R+LRR+ I ++V+++ E+RI+TDAGR RPL
Sbjct: 5 RVYINGALVGFHDNGEELANKIRELRRKGRI-SNQVNVVYYPDSNEVRINTDAGRARRPL 63
Query: 580 LIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
++ ++G L+ HI+ +K+ + + LV+ G++EY+D EEE +A+++
Sbjct: 64 IVVKDGKPLVTPEHIEKIKKGELT---IEDLVRQGLIEYLDAEEEENAYVAVYE 114
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 519 TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR--EIRIHTDAGRIC 576
K++VNG VG H +PE+L +R+ RR+ + VSE+ + +RDR E+ ++ DAGR
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGE--VSEMVNV-SVRDRTGEVIVNADAGRAR 63
Query: 577 RPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
RPLL+ ENG ++ + ++ +K D + ++ LV++G VE+ID EEE ++ + +
Sbjct: 64 RPLLVVENGEPVVTQEEVEAVKNGDID---FEDLVEAGKVEFIDAEEEEDILVGVEE 117
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 519 TKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDR--EIRIHTDAGRIC 576
K++VNG VG H +PE+L +R+ RR+ + VSE+ + +RDR E+ ++ DAGR
Sbjct: 7 AKVYVNGSLVGTHENPEELAEQIREARRRGE--VSEMVNV-SVRDRTGEVIVNADAGRAR 63
Query: 577 RPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
RPLL+ ENG ++ + ++ +K D + ++ LV++G VE+ID EEE ++ + +
Sbjct: 64 RPLLVVENGEPVVTQEEVEAVKNGDID---FEDLVEAGKVEFIDAEEEEDILVGVEE 117
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 4/113 (3%)
Query: 521 IFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLL 580
I+VNG VG PE+L+ +R+ RR+ ++ ++ + +I I+TDAGRI RPL+
Sbjct: 11 IYVNGKLVGTTDKPEELVNFIREKRRKGEL-PQYTTVAYNEESNDIHINTDAGRIVRPLI 69
Query: 581 IAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
+ ENG L K HI+ LK+ + + LV+ GV+EY+D EEE IA+ +
Sbjct: 70 VVENGKPKLTKEHIEKLKKGEIT---FSDLVKEGVIEYLDAEEEENAYIALSE 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,868,004
Number of Sequences: 539616
Number of extensions: 10137588
Number of successful extensions: 27473
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 23989
Number of HSP's gapped (non-prelim): 2552
length of query: 661
length of database: 191,569,459
effective HSP length: 124
effective length of query: 537
effective length of database: 124,657,075
effective search space: 66940849275
effective search space used: 66940849275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)